AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007207.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007207.01.T01 MTR_2g022600 98.131 321 6 0 1 321 1 321 0.0 645
MsG0280007207.01.T01 MTR_3g098750 86.520 319 28 4 21 338 142 446 0.0 540
MsG0280007207.01.T01 MTR_0103s0010 92.405 79 6 0 243 321 1 79 8.90e-46 153
MsG0280007207.01.T01 MTR_6g009130 92.405 79 6 0 243 321 1 79 1.44e-45 154
MsG0280007207.01.T01 MTR_7g080410 31.557 244 140 8 22 245 27 263 3.17e-17 81.6
MsG0280007207.01.T01 MTR_7g080410 31.557 244 140 8 22 245 27 263 5.22e-17 80.5
MsG0280007207.01.T01 MTR_8g096620 30.180 222 132 7 33 247 45 250 3.41e-16 79.0
MsG0280007207.01.T01 MTR_1196s0010 33.816 207 122 7 22 221 262 460 4.16e-14 73.6
MsG0280007207.01.T01 MTR_3g085740 33.333 183 111 5 38 214 80 257 3.86e-13 69.7
MsG0280007207.01.T01 MTR_3g087850 32.418 182 109 5 38 214 31 203 3.91e-12 66.6
MsG0280007207.01.T01 MTR_8g096580 28.070 228 143 7 9 226 17 233 9.02e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007207.01.T01 AT3G06060 69.401 317 96 1 5 320 25 341 1.01e-158 448
MsG0280007207.01.T01 AT3G06060 69.401 317 96 1 5 320 8 324 1.31e-158 447
MsG0280007207.01.T01 AT5G19200 64.379 306 109 0 16 321 18 323 4.73e-146 416
MsG0280007207.01.T01 AT3G47350 28.085 235 148 7 33 259 44 265 1.42e-17 82.4
MsG0280007207.01.T01 AT3G47360 27.652 264 170 7 9 264 21 271 1.04e-16 80.1
MsG0280007207.01.T01 AT5G50690 28.279 244 148 7 33 264 45 273 2.30e-16 79.0
MsG0280007207.01.T01 AT5G50590 28.279 244 148 7 33 264 45 273 2.30e-16 79.0
MsG0280007207.01.T01 AT3G47350 27.586 232 149 7 33 259 44 261 4.51e-16 78.2
MsG0280007207.01.T01 AT5G50600 30.729 192 117 5 38 224 50 230 1.46e-15 77.0
MsG0280007207.01.T01 AT5G50700 30.729 192 117 5 38 224 50 230 1.46e-15 77.0
MsG0280007207.01.T01 AT2G29360 28.139 231 153 5 25 250 11 233 1.93e-15 75.9
MsG0280007207.01.T01 AT5G50690 29.756 205 128 5 33 232 45 238 3.10e-15 74.7
MsG0280007207.01.T01 AT5G50590 29.756 205 128 5 33 232 45 238 3.10e-15 74.7
MsG0280007207.01.T01 AT3G03330 30.000 240 133 8 33 245 41 272 1.59e-13 70.9
MsG0280007207.01.T01 AT5G65205 33.516 182 107 5 38 214 11 183 2.64e-13 69.7
MsG0280007207.01.T01 AT2G29370 28.218 202 135 4 24 220 8 204 2.22e-12 67.0
MsG0280007207.01.T01 AT2G29150 31.016 187 119 4 39 220 22 203 2.33e-12 67.0
MsG0280007207.01.T01 AT2G29350 29.412 187 123 3 39 220 21 203 1.02e-11 64.3
MsG0280007207.01.T01 AT2G29350 29.412 187 123 3 39 220 21 203 2.43e-11 63.9
MsG0280007207.01.T01 AT1G10310 30.058 173 111 4 36 203 18 185 7.16e-11 62.0

Find 91 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTATTCGGCCAGTAAATT+TGG 0.214786 2:+11942874 MsG0280007207.01.T01:CDS
AGAAGAGGCTGCAATGATTT+TGG 0.223794 2:-11943487 None:intergenic
AAGACGTGGCGGTTGGTAAT+TGG 0.231926 2:-11940938 None:intergenic
TGCGTTGGAATTGGAGAAAA+TGG 0.239743 2:+11941207 MsG0280007207.01.T01:CDS
GGAGTTTAGGTGGGAATTTA+TGG 0.245092 2:+11942844 MsG0280007207.01.T01:intron
CGGCGGCGGCGCGATGGGCG+AGG 0.245869 2:-11940994 None:intergenic
CCCTCAGAGGTCATTCTTAA+TGG 0.249957 2:+11943629 MsG0280007207.01.T01:CDS
TTATGGTTATGTAGCTTATT+CGG 0.295839 2:+11942861 MsG0280007207.01.T01:CDS
CACCATCGGCGGCGGCGCGA+TGG 0.300567 2:-11941000 None:intergenic
ACCACGGAGGCCAAATTTAC+TGG 0.301992 2:-11942884 None:intergenic
CGGCGCGATGGGCGAGGGCG+AGG 0.327956 2:-11940988 None:intergenic
GTTGGTAATTGGGATCTTGA+TGG 0.328935 2:-11940927 None:intergenic
TACGATTGATGTTAATTTGA+TGG 0.335633 2:+11941249 MsG0280007207.01.T01:CDS
GGAGGAGGAGGAGAGGGAGG+AGG 0.340474 2:-11940874 None:intergenic
AAAATCATTGCAGCCTCTTC+TGG 0.342665 2:+11943489 MsG0280007207.01.T01:CDS
GCGTTATCCCTAGCAACTTC+AGG 0.363331 2:+11943600 MsG0280007207.01.T01:CDS
GGCGGCGGCGCGATGGGCGA+GGG 0.367664 2:-11940993 None:intergenic
GCCCATCGCGCCGCCGCCGA+TGG 0.370837 2:+11940998 MsG0280007207.01.T01:CDS
CACTATGTTTCCAGTGGAAC+TGG 0.390366 2:+11943694 MsG0280007207.01.T01:CDS
CTTTGCCTCAAATGAAGAAT+AGG 0.390871 2:+11941296 MsG0280007207.01.T01:CDS
TTTGTTGAGGTTATTACTGC+TGG 0.392303 2:+11943654 MsG0280007207.01.T01:CDS
TTGGTAATTGGGATCTTGAT+GGG 0.396530 2:-11940926 None:intergenic
AGACGTGGCGGTTGGTAATT+GGG 0.401655 2:-11940937 None:intergenic
TGTTTCATCACAAGCTGGTC+AGG 0.403214 2:+11941348 MsG0280007207.01.T01:CDS
ATTGGGATCTTGATGGGGCG+GGG 0.404135 2:-11940920 None:intergenic
GGACGAGGAAGTAGAGGAGG+GGG 0.404238 2:-11940895 None:intergenic
TTGGGATCTTGATGGGGCGG+GGG 0.411930 2:-11940919 None:intergenic
ACCATCGGCGGCGGCGCGAT+GGG 0.417942 2:-11940999 None:intergenic
GCCGATGCCGCTTGAGCCGC+CGG 0.432437 2:-11940966 None:intergenic
GAGAGGGAGGAGGATGAAGA+AGG 0.435215 2:-11940864 None:intergenic
GATGTGTTGTTGTTGAATCA+TGG 0.436317 2:+11941175 MsG0280007207.01.T01:CDS
GATACTCCTGGACTTGTAGA+AGG 0.438678 2:+11942979 MsG0280007207.01.T01:CDS
GCATTGCAACAAGAGGTTAT+AGG 0.440395 2:+11942916 MsG0280007207.01.T01:CDS
TCTTTCCTATTCTTCATTTG+AGG 0.444715 2:-11941301 None:intergenic
ATTCAACAACAACACATCAA+TGG 0.449590 2:-11941170 None:intergenic
TATCATTTCTTGCAATTTGG+AGG 0.451120 2:+11943572 MsG0280007207.01.T01:CDS
TTCAACAACAACACATCAAT+GGG 0.463160 2:-11941169 None:intergenic
GGCGGACGAGGAAGTAGAGG+AGG 0.463478 2:-11940898 None:intergenic
AATTGGGATCTTGATGGGGC+GGG 0.485892 2:-11940921 None:intergenic
ACGATTGATGTTAATTTGAT+GGG 0.487967 2:+11941250 MsG0280007207.01.T01:CDS
ACCGGCGGCTCAAGCGGCAT+CGG 0.488690 2:+11940965 MsG0280007207.01.T01:CDS
AACGCTACCGGCGTAGAAGT+AGG 0.491607 2:+11941085 MsG0280007207.01.T01:CDS
GGGATAAACCTGAAGTTGCT+AGG 0.498430 2:-11943608 None:intergenic
TGTTTCCAGTGGAACTGGTA+TGG 0.499008 2:+11943699 MsG0280007207.01.T01:CDS
TAATTGGGATCTTGATGGGG+CGG 0.499982 2:-11940922 None:intergenic
ACGCTACCGGCGTAGAAGTA+GGG 0.501954 2:+11941086 MsG0280007207.01.T01:CDS
AGTCCAGGAGTATCAGTGTC+TGG 0.502012 2:-11942970 None:intergenic
TTCATCACCGGCGGCTCAAG+CGG 0.502972 2:+11940959 MsG0280007207.01.T01:CDS
TGATTACCTTCTACAAGTCC+AGG 0.503150 2:-11942985 None:intergenic
ATTCTTAATGGCATTTGTTG+AGG 0.509829 2:+11943641 MsG0280007207.01.T01:CDS
AACCGCCACGTCTTCATCAC+CGG 0.514257 2:+11940947 MsG0280007207.01.T01:CDS
TGCTTCTTCGAGTTTCGTGA+GGG 0.518995 2:-11941047 None:intergenic
CGTGAGGGATCGTGCCATGA+TGG 0.522842 2:-11941032 None:intergenic
CCTCCAGACACTGATACTCC+TGG 0.522898 2:+11942967 MsG0280007207.01.T01:CDS
ATCATTTCTTGCAATTTGGA+GGG 0.526476 2:+11943573 MsG0280007207.01.T01:CDS
TACGCCGGTAGCGTTCTTGA+CGG 0.529338 2:-11941077 None:intergenic
CCATTAAGAATGACCTCTGA+GGG 0.529640 2:-11943629 None:intergenic
TAGAGAAGTGGCACAAGCAA+AGG 0.532078 2:+11943727 MsG0280007207.01.T01:CDS
CGGACGAGGAAGTAGAGGAG+GGG 0.536057 2:-11940896 None:intergenic
GATGGAGACACGTGCACCAT+CGG 0.536595 2:-11941014 None:intergenic
GACACGTGCACCATCGGCGG+CGG 0.536822 2:-11941008 None:intergenic
GAAACAAAAGCAATAGAAGC+AGG 0.538608 2:-11941331 None:intergenic
TACTTCCATACCAGTTCCAC+TGG 0.538704 2:-11943704 None:intergenic
AGCAGAAGCATTGCAACAAG+AGG 0.543956 2:+11942909 MsG0280007207.01.T01:CDS
TTGCTTCTTCGAGTTTCGTG+AGG 0.545567 2:-11941048 None:intergenic
AACTCCGTCAAGAACGCTAC+CGG 0.545959 2:+11941073 MsG0280007207.01.T01:CDS
GCCAGTAAATTTGGCCTCCG+TGG 0.557668 2:+11942883 MsG0280007207.01.T01:CDS
AGCTTTCTGAGCAACTTCAT+CGG 0.559805 2:-11943523 None:intergenic
AAGAAAGTAGTTGATGAAGC+TGG 0.565432 2:+11941145 MsG0280007207.01.T01:CDS
TGGTAATTGGGATCTTGATG+GGG 0.568213 2:-11940925 None:intergenic
GGATAAACCTGAAGTTGCTA+GGG 0.579338 2:-11943607 None:intergenic
GGCTTTCATAAAACCAGAAG+AGG 0.581855 2:-11943502 None:intergenic
TGGTGCACGTGTCTCCATCA+TGG 0.583390 2:+11941018 MsG0280007207.01.T01:CDS
CAGGAGTATCAGTGTCTGGA+GGG 0.591739 2:-11942966 None:intergenic
GCGGACGAGGAAGTAGAGGA+GGG 0.606621 2:-11940897 None:intergenic
GGTGATGAAGACGTGGCGGT+TGG 0.614359 2:-11940945 None:intergenic
GAATATCCCTACTTCTACGC+CGG 0.630276 2:-11941092 None:intergenic
GGTATGGAAGTATAGAGAAG+TGG 0.632472 2:+11943715 MsG0280007207.01.T01:CDS
AGCCGCCGGTGATGAAGACG+TGG 0.634720 2:-11940952 None:intergenic
CCAGGAGTATCAGTGTCTGG+AGG 0.642770 2:-11942967 None:intergenic
CGCCACGTCTTCATCACCGG+CGG 0.652054 2:+11940950 MsG0280007207.01.T01:CDS
GGAGACACGTGCACCATCGG+CGG 0.653603 2:-11941011 None:intergenic
TAGCAGCACTATGTTTCCAG+TGG 0.655763 2:+11943688 MsG0280007207.01.T01:CDS
GAAGAAGGAGAAGAATGCGT+CGG 0.665412 2:-11940849 None:intergenic
GCCATTAAGAATGACCTCTG+AGG 0.666181 2:-11943630 None:intergenic
CTTCAGGTTTATCCCCTCAG+AGG 0.666800 2:+11943616 MsG0280007207.01.T01:CDS
CGCCGGTGATGAAGACGTGG+CGG 0.668407 2:-11940949 None:intergenic
GCAATGCTTCTGCTAAACCA+CGG 0.698466 2:-11942900 None:intergenic
AGAAGTAGGGATATTCGCAG+CGG 0.746455 2:+11941099 MsG0280007207.01.T01:CDS
CATTAAGAATGACCTCTGAG+GGG 0.759100 2:-11943628 None:intergenic
ATGCTTCTGCTAAACCACGG+AGG 0.773999 2:-11942897 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTATGTTTTTTTTTTTTT+TGG + Chr2:11941588-11941607 MsG0280007207.01.T01:intron 10.0%
!!! ATTAATATTTTTTTTTACTG+TGG + Chr2:11942726-11942745 MsG0280007207.01.T01:intron 10.0%
!! AAGTTAATAGATTATTTGTT+AGG + Chr2:11941822-11941841 MsG0280007207.01.T01:intron 15.0%
!! CTAACATAAAGTTTATTATT+GGG + Chr2:11942174-11942193 MsG0280007207.01.T01:intron 15.0%
!! CTGATAAATTATGTTTATTA+TGG + Chr2:11941390-11941409 MsG0280007207.01.T01:intron 15.0%
!! TCTAACATAAAGTTTATTAT+TGG + Chr2:11942173-11942192 MsG0280007207.01.T01:intron 15.0%
!!! TTTTTTTTTTGGAAAAACAT+AGG + Chr2:11941599-11941618 MsG0280007207.01.T01:intron 15.0%
!! AAAAAAAAACATAACTCCAT+TGG - Chr2:11941584-11941603 None:intergenic 20.0%
!! AAAAAAAACATAACTCCATT+GGG - Chr2:11941583-11941602 None:intergenic 20.0%
!! AAATCAAAAGAAAAAGAGAA+GGG - Chr2:11942544-11942563 None:intergenic 20.0%
!! AGAATTTCTATTATAAAGAG+TGG - Chr2:11942392-11942411 None:intergenic 20.0%
!! ATGACAAAATCAGAAAATTT+AGG - Chr2:11943353-11943372 None:intergenic 20.0%
!! CAAATTATAGATAGTTTCTT+TGG - Chr2:11941746-11941765 None:intergenic 20.0%
!! CCATAAAATATAAAACTCAA+CGG + Chr2:11942023-11942042 MsG0280007207.01.T01:intron 20.0%
!! GAATTACTAACAAAATCATT+TGG - Chr2:11943230-11943249 None:intergenic 20.0%
!! GAATTTCTATTATAAAGAGT+GGG - Chr2:11942391-11942410 None:intergenic 20.0%
!! GATATGCTAAAAGTAAAAAT+AGG - Chr2:11942671-11942690 None:intergenic 20.0%
!! TATATAGTATATTGTCATGT+AGG + Chr2:11943304-11943323 MsG0280007207.01.T01:intron 20.0%
!! TATCGAATTGTTATAAGAAT+GGG + Chr2:11942633-11942652 MsG0280007207.01.T01:intron 20.0%
!! TTAGAATAGTTTCAAATAGT+GGG - Chr2:11942158-11942177 None:intergenic 20.0%
!!! TATTTTTTAATGTGGAGTTT+AGG + Chr2:11942831-11942850 MsG0280007207.01.T01:intron 20.0%
!!! TTTTATCATTTCTTGCAATT+TGG + Chr2:11943569-11943588 MsG0280007207.01.T01:CDS 20.0%
! AAAAAAACATAACTCCATTG+GGG - Chr2:11941582-11941601 None:intergenic 25.0%
! AACATAGATCAATTACCAAA+AGG - Chr2:11943051-11943070 None:intergenic 25.0%
! AAGTTTAAGTACAAACTGAA+AGG + Chr2:11943428-11943447 MsG0280007207.01.T01:intron 25.0%
! ACATAAAGTTTATTATTGGG+TGG + Chr2:11942177-11942196 MsG0280007207.01.T01:intron 25.0%
! AGTTTATACCAATTATTGTG+TGG + Chr2:11941441-11941460 MsG0280007207.01.T01:intron 25.0%
! CTATCGAATTGTTATAAGAA+TGG + Chr2:11942632-11942651 MsG0280007207.01.T01:intron 25.0%
! GAAATCAAAAGAAAAAGAGA+AGG - Chr2:11942545-11942564 None:intergenic 25.0%
! GTTAGAATAGTTTCAAATAG+TGG - Chr2:11942159-11942178 None:intergenic 25.0%
! GTTTATACCAATTATTGTGT+GGG + Chr2:11941442-11941461 MsG0280007207.01.T01:intron 25.0%
! TTATGGTTATGTAGCTTATT+CGG + Chr2:11942861-11942880 MsG0280007207.01.T01:CDS 25.0%
! TTTCAGTTTGTACTTAAACT+TGG - Chr2:11943429-11943448 None:intergenic 25.0%
!! ACACATATTAGTATTCCTTT+TGG + Chr2:11943033-11943052 MsG0280007207.01.T01:intron 25.0%
!! ACGATTGATGTTAATTTGAT+GGG + Chr2:11941250-11941269 MsG0280007207.01.T01:CDS 25.0%
!! ATGATTCAGATGATATGTTT+TGG - Chr2:11942597-11942616 None:intergenic 25.0%
!! TACGATTGATGTTAATTTGA+TGG + Chr2:11941249-11941268 MsG0280007207.01.T01:CDS 25.0%
!!! AGTTGACTTGTTAAAATGAA+TGG + Chr2:11941928-11941947 MsG0280007207.01.T01:intron 25.0%
!!! CCGTTGAGTTTTATATTTTA+TGG - Chr2:11942026-11942045 None:intergenic 25.0%
AATCAATCCCACACAATAAT+TGG - Chr2:11941452-11941471 None:intergenic 30.0%
ACTTGTAGAAGGTAATCAAT+TGG + Chr2:11942990-11943009 MsG0280007207.01.T01:intron 30.0%
ATATTGATCATGCAATGTAG+GGG - Chr2:11941960-11941979 None:intergenic 30.0%
ATCATTTCTTGCAATTTGGA+GGG + Chr2:11943573-11943592 MsG0280007207.01.T01:CDS 30.0%
ATCTAATATCGCTAATAAGC+TGG + Chr2:11941890-11941909 MsG0280007207.01.T01:intron 30.0%
ATGTTTATTATGGCCATGTT+TGG + Chr2:11941400-11941419 MsG0280007207.01.T01:intron 30.0%
ATTCAACAACAACACATCAA+TGG - Chr2:11941173-11941192 None:intergenic 30.0%
CATATTGATCATGCAATGTA+GGG - Chr2:11941961-11941980 None:intergenic 30.0%
CTATTAACTTCTTCCAAACA+TGG - Chr2:11941812-11941831 None:intergenic 30.0%
GTGAGAGAATAAAGGTTATT+AGG - Chr2:11942434-11942453 None:intergenic 30.0%
TAGAAATTCTCCTAGATTTG+AGG + Chr2:11942402-11942421 MsG0280007207.01.T01:intron 30.0%
TAGGATATTACCTCAAATCT+AGG - Chr2:11942415-11942434 None:intergenic 30.0%
TATATTGTCATGTAGGAAGT+AGG + Chr2:11943311-11943330 MsG0280007207.01.T01:intron 30.0%
TATCATTTCTTGCAATTTGG+AGG + Chr2:11943572-11943591 MsG0280007207.01.T01:CDS 30.0%
TCATATTGATCATGCAATGT+AGG - Chr2:11941962-11941981 None:intergenic 30.0%
TCATCTGAATCATTAGCTAT+AGG + Chr2:11942604-11942623 MsG0280007207.01.T01:intron 30.0%
TCTCTGTAATTAACCATGTT+TGG + Chr2:11941796-11941815 MsG0280007207.01.T01:intron 30.0%
TCTTTCCTATTCTTCATTTG+AGG - Chr2:11941304-11941323 None:intergenic 30.0%
TGTAGAAAGTGAGAGAATAA+AGG - Chr2:11942442-11942461 None:intergenic 30.0%
TTAAGCTGTTTATCCAAACA+TGG - Chr2:11941416-11941435 None:intergenic 30.0%
TTCAACAACAACACATCAAT+GGG - Chr2:11941172-11941191 None:intergenic 30.0%
TTCAGTTTACATCGAAAATG+AGG + Chr2:11943069-11943088 MsG0280007207.01.T01:intron 30.0%
TTCTATTATAAAGAGTGGGA+AGG - Chr2:11942387-11942406 None:intergenic 30.0%
TTTCTAACAAACATCTAGAG+TGG - Chr2:11941558-11941577 None:intergenic 30.0%
! ATTCTTAATGGCATTTGTTG+AGG + Chr2:11943641-11943660 MsG0280007207.01.T01:CDS 30.0%
! GCTAAACAACTCATTAGTTT+AGG + Chr2:11943104-11943123 MsG0280007207.01.T01:intron 30.0%
! TATAGGGAAGGTATAGAAAA+TGG - Chr2:11941650-11941669 None:intergenic 30.0%
! TTTTAATGTGGAGTTTAGGT+GGG + Chr2:11942835-11942854 MsG0280007207.01.T01:intron 30.0%
! TTTTTAATGTGGAGTTTAGG+TGG + Chr2:11942834-11942853 MsG0280007207.01.T01:intron 30.0%
!! AGATGATATGTTTTGGATGT+TGG - Chr2:11942590-11942609 None:intergenic 30.0%
AAACAATGTCACGGCATAAT+TGG - Chr2:11941500-11941519 None:intergenic 35.0%
AAACTGCACTAGTGTGAATT+GGG + Chr2:11942471-11942490 MsG0280007207.01.T01:intron 35.0%
AAAGTTGTCAAGAGTCAGTT+AGG - Chr2:11942343-11942362 None:intergenic 35.0%
AAATTTGACTGACACCCATT+TGG + Chr2:11941855-11941874 MsG0280007207.01.T01:intron 35.0%
AACCCCATAAAACAATGTCA+CGG - Chr2:11941509-11941528 None:intergenic 35.0%
ACACTAGTGCAGTTTCTATA+AGG - Chr2:11942466-11942485 None:intergenic 35.0%
ACTAATGAGTTGTTTAGCCA+AGG - Chr2:11943102-11943121 None:intergenic 35.0%
AGTTTAGGTCAACCTCAATA+TGG + Chr2:11943119-11943138 MsG0280007207.01.T01:intron 35.0%
ATAGTGTGCAGAAACCAAAT+GGG - Chr2:11941872-11941891 None:intergenic 35.0%
CTTTGCCTCAAATGAAGAAT+AGG + Chr2:11941296-11941315 MsG0280007207.01.T01:CDS 35.0%
GAAACAAAAGCAATAGAAGC+AGG - Chr2:11941334-11941353 None:intergenic 35.0%
GGCAATTGCAACTATTGAAA+TGG + Chr2:11942066-11942085 MsG0280007207.01.T01:intron 35.0%
GGCAGCTAAATGAAGTTAAT+TGG + Chr2:11941678-11941697 MsG0280007207.01.T01:intron 35.0%
TACCTTCCCTATATATCGAT+TGG + Chr2:11941657-11941676 MsG0280007207.01.T01:intron 35.0%
TAGCATATCAGTTCAACACT+TGG + Chr2:11942682-11942701 MsG0280007207.01.T01:intron 35.0%
TAGCTGCCAATCGATATATA+GGG - Chr2:11941666-11941685 None:intergenic 35.0%
TCAATATGGATGTGGAATCA+GGG + Chr2:11943133-11943152 MsG0280007207.01.T01:intron 35.0%
TCCATATTACGAGTGTCTTT+GGG + Chr2:11943281-11943300 MsG0280007207.01.T01:intron 35.0%
TGAGCTTAAAGCTCTTACAA+TGG + Chr2:11942232-11942251 MsG0280007207.01.T01:intron 35.0%
TTAGCTGCCAATCGATATAT+AGG - Chr2:11941667-11941686 None:intergenic 35.0%
TTCCATATTACGAGTGTCTT+TGG + Chr2:11943280-11943299 MsG0280007207.01.T01:intron 35.0%
TTTGGAAAAACATAGGAGTG+TGG + Chr2:11941606-11941625 MsG0280007207.01.T01:intron 35.0%
TTTGTTGAGGTTATTACTGC+TGG + Chr2:11943654-11943673 MsG0280007207.01.T01:CDS 35.0%
! GATGTGTTGTTGTTGAATCA+TGG + Chr2:11941175-11941194 MsG0280007207.01.T01:CDS 35.0%
! TCTTACAATGGTGGAAAGAT+GGG + Chr2:11942244-11942263 MsG0280007207.01.T01:intron 35.0%
! TGTGTTTTATGCGTTGGAAT+TGG + Chr2:11941198-11941217 MsG0280007207.01.T01:CDS 35.0%
! TGTTTGTTAGAAATCCCCAA+TGG + Chr2:11941565-11941584 MsG0280007207.01.T01:intron 35.0%
! TTGGTAATTGGGATCTTGAT+GGG - Chr2:11940929-11940948 None:intergenic 35.0%
! TTTTGGATGTTGGAATGCAA+AGG - Chr2:11942580-11942599 None:intergenic 35.0%
!! AAGAAAGTAGTTGATGAAGC+TGG + Chr2:11941145-11941164 MsG0280007207.01.T01:CDS 35.0%
!! ATGCCGTGACATTGTTTTAT+GGG + Chr2:11941503-11941522 MsG0280007207.01.T01:intron 35.0%
!! TATGCCGTGACATTGTTTTA+TGG + Chr2:11941502-11941521 MsG0280007207.01.T01:intron 35.0%
AAAATCATTGCAGCCTCTTC+TGG + Chr2:11943489-11943508 MsG0280007207.01.T01:CDS 40.0%
ACCCAAAGACACTCGTAATA+TGG - Chr2:11943285-11943304 None:intergenic 40.0%
AGCTTTCTGAGCAACTTCAT+CGG - Chr2:11943526-11943545 None:intergenic 40.0%
AGTTAGGAGAGATTTCTCTC+TGG - Chr2:11942327-11942346 None:intergenic 40.0%
CAAGAGATGATCTAGTGATG+TGG + Chr2:11942798-11942817 MsG0280007207.01.T01:intron 40.0%
CACACTCTACAACAACTCAA+CGG + Chr2:11942105-11942124 MsG0280007207.01.T01:intron 40.0%
CATTAAGAATGACCTCTGAG+GGG - Chr2:11943631-11943650 None:intergenic 40.0%
CCATTAAGAATGACCTCTGA+GGG - Chr2:11943632-11943651 None:intergenic 40.0%
CTCAACCATTTGCAGAAGAT+GGG - Chr2:11942216-11942235 None:intergenic 40.0%
CTCAATATGGATGTGGAATC+AGG + Chr2:11943132-11943151 MsG0280007207.01.T01:intron 40.0%
CTGATTCCACATCCATATTG+AGG - Chr2:11943134-11943153 None:intergenic 40.0%
GAAAATGAGGCAAGTAACCT+TGG + Chr2:11943082-11943101 MsG0280007207.01.T01:intron 40.0%
GAAACTGCACTAGTGTGAAT+TGG + Chr2:11942470-11942489 MsG0280007207.01.T01:intron 40.0%
GATAGTGTGCAGAAACCAAA+TGG - Chr2:11941873-11941892 None:intergenic 40.0%
GCATTGCAACAAGAGGTTAT+AGG + Chr2:11942916-11942935 MsG0280007207.01.T01:CDS 40.0%
GCTTAAAGCTCTTACAATGG+TGG + Chr2:11942235-11942254 MsG0280007207.01.T01:intron 40.0%
GCTTATTCGGCCAGTAAATT+TGG + Chr2:11942874-11942893 MsG0280007207.01.T01:CDS 40.0%
GGAGTTTAGGTGGGAATTTA+TGG + Chr2:11942844-11942863 MsG0280007207.01.T01:intron 40.0%
GGATAAACCTGAAGTTGCTA+GGG - Chr2:11943610-11943629 None:intergenic 40.0%
GGCTTTCATAAAACCAGAAG+AGG - Chr2:11943505-11943524 None:intergenic 40.0%
TAGACAAATTTCCCACGAGA+TGG - Chr2:11943394-11943413 None:intergenic 40.0%
TATGAACTCCTACTAGAGCT+AGG + Chr2:11942293-11942312 MsG0280007207.01.T01:intron 40.0%
TGAGTTGTTGTAGAGTGTGT+TGG - Chr2:11942104-11942123 None:intergenic 40.0%
TGATTACCTTCTACAAGTCC+AGG - Chr2:11942988-11943007 None:intergenic 40.0%
TGCCAATCGATATATAGGGA+AGG - Chr2:11941662-11941681 None:intergenic 40.0%
TGCGTTGGAATTGGAGAAAA+TGG + Chr2:11941207-11941226 MsG0280007207.01.T01:CDS 40.0%
TGGAATGCAAAGGAAGTGAA+GGG - Chr2:11942570-11942589 None:intergenic 40.0%
TGGTAATTGGGATCTTGATG+GGG - Chr2:11940928-11940947 None:intergenic 40.0%
TGTTCAAGCACTTCAATTGC+AGG - Chr2:11943159-11943178 None:intergenic 40.0%
TTGATCCCATCTTCTGCAAA+TGG + Chr2:11942208-11942227 MsG0280007207.01.T01:intron 40.0%
TTGGAATGCAAAGGAAGTGA+AGG - Chr2:11942571-11942590 None:intergenic 40.0%
! AGAAGAGGCTGCAATGATTT+TGG - Chr2:11943490-11943509 None:intergenic 40.0%
! CAACAACTCAACGGCAATTT+TGG + Chr2:11942114-11942133 MsG0280007207.01.T01:intron 40.0%
! CTCTTACAATGGTGGAAAGA+TGG + Chr2:11942243-11942262 MsG0280007207.01.T01:intron 40.0%
! CTTACAATGGTGGAAAGATG+GGG + Chr2:11942245-11942264 MsG0280007207.01.T01:intron 40.0%
! GAGAGATTTCTCTCTGGTTT+AGG - Chr2:11942321-11942340 None:intergenic 40.0%
! GGTATGGAAGTATAGAGAAG+TGG + Chr2:11943715-11943734 MsG0280007207.01.T01:CDS 40.0%
! GTTGCTCAGAAAGCTTTTGA+TGG + Chr2:11943531-11943550 MsG0280007207.01.T01:CDS 40.0%
! TCATGGTGTGTTTTATGCGT+TGG + Chr2:11941192-11941211 MsG0280007207.01.T01:CDS 40.0%
!! GCTTTTGTTTCATCACAAGC+TGG + Chr2:11941343-11941362 MsG0280007207.01.T01:CDS 40.0%
!! GTTGGTAATTGGGATCTTGA+TGG - Chr2:11940930-11940949 None:intergenic 40.0%
!! TCAACGGCAATTTTGGTATG+TGG + Chr2:11942121-11942140 MsG0280007207.01.T01:intron 40.0%
!! TGCCGTGACATTGTTTTATG+GGG + Chr2:11941504-11941523 MsG0280007207.01.T01:intron 40.0%
AAGCTGGTCAGGTATGGAAT+TGG + Chr2:11941359-11941378 MsG0280007207.01.T01:intron 45.0%
AGAAGTAGGGATATTCGCAG+CGG + Chr2:11941099-11941118 MsG0280007207.01.T01:CDS 45.0%
AGATGGCACACAATGGTACT+TGG - Chr2:11943377-11943396 None:intergenic 45.0%
AGTGTGAATTGGGCCCAATT+GGG + Chr2:11942481-11942500 MsG0280007207.01.T01:intron 45.0%
CACTATGTTTCCAGTGGAAC+TGG + Chr2:11943694-11943713 MsG0280007207.01.T01:CDS 45.0%
CCCTCAGAGGTCATTCTTAA+TGG + Chr2:11943629-11943648 MsG0280007207.01.T01:CDS 45.0%
GAAGAAGGAGAAGAATGCGT+CGG - Chr2:11940852-11940871 None:intergenic 45.0%
GAATATCCCTACTTCTACGC+CGG - Chr2:11941095-11941114 None:intergenic 45.0%
GATACTCCTGGACTTGTAGA+AGG + Chr2:11942979-11942998 MsG0280007207.01.T01:CDS 45.0%
GCAATGCTTCTGCTAAACCA+CGG - Chr2:11942903-11942922 None:intergenic 45.0%
GCCATTAAGAATGACCTCTG+AGG - Chr2:11943633-11943652 None:intergenic 45.0%
GCTCAACCATTTGCAGAAGA+TGG - Chr2:11942217-11942236 None:intergenic 45.0%
GGGATAAACCTGAAGTTGCT+AGG - Chr2:11943611-11943630 None:intergenic 45.0%
GGTCAACCTCAATATGGATG+TGG + Chr2:11943125-11943144 MsG0280007207.01.T01:intron 45.0%
TAATTGGGATCTTGATGGGG+CGG - Chr2:11940925-11940944 None:intergenic 45.0%
TACTTCCATACCAGTTCCAC+TGG - Chr2:11943707-11943726 None:intergenic 45.0%
TAGAGAAGTGGCACAAGCAA+AGG + Chr2:11943727-11943746 MsG0280007207.01.T01:CDS 45.0%
TAGCAGCACTATGTTTCCAG+TGG + Chr2:11943688-11943707 MsG0280007207.01.T01:CDS 45.0%
TAGTGTGAATTGGGCCCAAT+TGG + Chr2:11942480-11942499 MsG0280007207.01.T01:intron 45.0%
TGTTTCATCACAAGCTGGTC+AGG + Chr2:11941348-11941367 MsG0280007207.01.T01:CDS 45.0%
TGTTTCCAGTGGAACTGGTA+TGG + Chr2:11943699-11943718 MsG0280007207.01.T01:CDS 45.0%
! AGGGAAGATTATAGAGCACC+AGG - Chr2:11942525-11942544 None:intergenic 45.0%
! GGGAAGATTATAGAGCACCA+GGG - Chr2:11942524-11942543 None:intergenic 45.0%
! TGCTTCTTCGAGTTTCGTGA+GGG - Chr2:11941050-11941069 None:intergenic 45.0%
! TTGCTTCTTCGAGTTTCGTG+AGG - Chr2:11941051-11941070 None:intergenic 45.0%
!! AGCAGAAGCATTGCAACAAG+AGG + Chr2:11942909-11942928 MsG0280007207.01.T01:CDS 45.0%
!! CGGCAATTTTGGTATGTGGA+CGG + Chr2:11942125-11942144 MsG0280007207.01.T01:intron 45.0%
!! GCAATGATTTTGGTGAGCTC+TGG - Chr2:11943480-11943499 None:intergenic 45.0%
!! GCTTTTGATGGCATAAGACG+TGG + Chr2:11943543-11943562 MsG0280007207.01.T01:CDS 45.0%
!! TTTAGGAGCCTAGCTCTAGT+AGG - Chr2:11942304-11942323 None:intergenic 45.0%
!!! TTTTATTTTATTTTTTAATG+TGG + Chr2:11942823-11942842 MsG0280007207.01.T01:intron 5.0%
AACTCCGTCAAGAACGCTAC+CGG + Chr2:11941073-11941092 MsG0280007207.01.T01:CDS 50.0%
AATTGGGATCTTGATGGGGC+GGG - Chr2:11940924-11940943 None:intergenic 50.0%
AATTGGGCTCTCACACGAAC+TGG + Chr2:11942497-11942516 MsG0280007207.01.T01:intron 50.0%
ACCACGGAGGCCAAATTTAC+TGG - Chr2:11942887-11942906 None:intergenic 50.0%
ACCATTGTGTGCCATCTCGT+GGG + Chr2:11943380-11943399 MsG0280007207.01.T01:intron 50.0%
ACGGTTTCACATTGCCCTTG+CGG + Chr2:11942042-11942061 MsG0280007207.01.T01:intron 50.0%
AGTTCGTGTGAGAGCCCAAT+TGG - Chr2:11942498-11942517 None:intergenic 50.0%
AGTTGCAATTGCCACCGCAA+GGG - Chr2:11942059-11942078 None:intergenic 50.0%
ATGCTTCTGCTAAACCACGG+AGG - Chr2:11942900-11942919 None:intergenic 50.0%
CATCACAAGCTGGTCAGGTA+TGG + Chr2:11941353-11941372 MsG0280007207.01.T01:intron 50.0%
GCGTTATCCCTAGCAACTTC+AGG + Chr2:11943600-11943619 MsG0280007207.01.T01:CDS 50.0%
GTTCGTGTGAGAGCCCAATT+GGG - Chr2:11942497-11942516 None:intergenic 50.0%
TACCATTGTGTGCCATCTCG+TGG + Chr2:11943379-11943398 MsG0280007207.01.T01:intron 50.0%
TAGTTGCAATTGCCACCGCA+AGG - Chr2:11942060-11942079 None:intergenic 50.0%
! CTTCAGGTTTATCCCCTCAG+AGG + Chr2:11943616-11943635 MsG0280007207.01.T01:CDS 50.0%
!! AAGACGTGGCGGTTGGTAAT+TGG - Chr2:11940941-11940960 None:intergenic 50.0%
!! AGACGTGGCGGTTGGTAATT+GGG - Chr2:11940940-11940959 None:intergenic 50.0%
!! AGTCCAGGAGTATCAGTGTC+TGG - Chr2:11942973-11942992 None:intergenic 50.0%
!! CAGGAGTATCAGTGTCTGGA+GGG - Chr2:11942969-11942988 None:intergenic 50.0%
AACCGCCACGTCTTCATCAC+CGG + Chr2:11940947-11940966 MsG0280007207.01.T01:CDS 55.0%
AACGCTACCGGCGTAGAAGT+AGG + Chr2:11941085-11941104 MsG0280007207.01.T01:CDS 55.0%
ACGCTACCGGCGTAGAAGTA+GGG + Chr2:11941086-11941105 MsG0280007207.01.T01:CDS 55.0%
ATTGGGATCTTGATGGGGCG+GGG - Chr2:11940923-11940942 None:intergenic 55.0%
CCTCCAGACACTGATACTCC+TGG + Chr2:11942967-11942986 MsG0280007207.01.T01:CDS 55.0%
GAGAGGGAGGAGGATGAAGA+AGG - Chr2:11940867-11940886 None:intergenic 55.0%
GATGGAGACACGTGCACCAT+CGG - Chr2:11941017-11941036 None:intergenic 55.0%
GCCAGTAAATTTGGCCTCCG+TGG + Chr2:11942883-11942902 MsG0280007207.01.T01:CDS 55.0%
GTTTCACATTGCCCTTGCGG+TGG + Chr2:11942045-11942064 MsG0280007207.01.T01:intron 55.0%
TACGCCGGTAGCGTTCTTGA+CGG - Chr2:11941080-11941099 None:intergenic 55.0%
TCCCACGAGATGGCACACAA+TGG - Chr2:11943384-11943403 None:intergenic 55.0%
TGGTGCACGTGTCTCCATCA+TGG + Chr2:11941018-11941037 MsG0280007207.01.T01:CDS 55.0%
!! CCAGGAGTATCAGTGTCTGG+AGG - Chr2:11942970-11942989 None:intergenic 55.0%
CGGACGAGGAAGTAGAGGAG+GGG - Chr2:11940899-11940918 None:intergenic 60.0%
CGTGAGGGATCGTGCCATGA+TGG - Chr2:11941035-11941054 None:intergenic 60.0%
CTCTCACACGAACTGGACCC+TGG + Chr2:11942504-11942523 MsG0280007207.01.T01:intron 60.0%
GCGGACGAGGAAGTAGAGGA+GGG - Chr2:11940900-11940919 None:intergenic 60.0%
GGACGAGGAAGTAGAGGAGG+GGG - Chr2:11940898-11940917 None:intergenic 60.0%
GGTGATGAAGACGTGGCGGT+TGG - Chr2:11940948-11940967 None:intergenic 60.0%
TTCATCACCGGCGGCTCAAG+CGG + Chr2:11940959-11940978 MsG0280007207.01.T01:CDS 60.0%
TTGGGATCTTGATGGGGCGG+GGG - Chr2:11940922-11940941 None:intergenic 60.0%
AGCCGCCGGTGATGAAGACG+TGG - Chr2:11940955-11940974 None:intergenic 65.0%
AGTAGAGGAGGGGGAGGAGG+AGG - Chr2:11940889-11940908 None:intergenic 65.0%
CGAGGAAGTAGAGGAGGGGG+AGG - Chr2:11940895-11940914 None:intergenic 65.0%
CGCCACGTCTTCATCACCGG+CGG + Chr2:11940950-11940969 MsG0280007207.01.T01:CDS 65.0%
CGCCGGTGATGAAGACGTGG+CGG - Chr2:11940952-11940971 None:intergenic 65.0%
GGAAGTAGAGGAGGGGGAGG+AGG - Chr2:11940892-11940911 None:intergenic 65.0%
GGAGACACGTGCACCATCGG+CGG - Chr2:11941014-11941033 None:intergenic 65.0%
GGCGGACGAGGAAGTAGAGG+AGG - Chr2:11940901-11940920 None:intergenic 65.0%
ACCGGCGGCTCAAGCGGCAT+CGG + Chr2:11940965-11940984 MsG0280007207.01.T01:CDS 70.0%
AGGAGGGGGAGGAGGAGGAG+AGG - Chr2:11940884-11940903 None:intergenic 70.0%
GACACGTGCACCATCGGCGG+CGG - Chr2:11941011-11941030 None:intergenic 70.0%
GGAGGAGGAGGAGAGGGAGG+AGG - Chr2:11940877-11940896 None:intergenic 70.0%
GGAGGGGGAGGAGGAGGAGA+GGG - Chr2:11940883-11940902 None:intergenic 70.0%
GGATCTTGATGGGGCGGGGG+CGG - Chr2:11940919-11940938 None:intergenic 70.0%
GGGGGCGGACGAGGAAGTAG+AGG - Chr2:11940904-11940923 None:intergenic 70.0%
ACCATCGGCGGCGGCGCGAT+GGG - Chr2:11941002-11941021 None:intergenic 75.0%
GGGGGAGGAGGAGGAGAGGG+AGG - Chr2:11940880-11940899 None:intergenic 75.0%
! GCCGATGCCGCTTGAGCCGC+CGG - Chr2:11940969-11940988 None:intergenic 75.0%
! CACCATCGGCGGCGGCGCGA+TGG - Chr2:11941003-11941022 None:intergenic 80.0%
! TGATGGGGCGGGGGCGGACG+AGG - Chr2:11940913-11940932 None:intergenic 80.0%
! CGGCGCGATGGGCGAGGGCG+AGG - Chr2:11940991-11941010 None:intergenic 85.0%
! GCCCATCGCGCCGCCGCCGA+TGG + Chr2:11940998-11941017 MsG0280007207.01.T01:CDS 85.0%
! GGCGGCGGCGCGATGGGCGA+GGG - Chr2:11940996-11941015 None:intergenic 85.0%
! CGGCGGCGGCGCGATGGGCG+AGG - Chr2:11940997-11941016 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
Chr2 gene 11940845 11943824 11940845 ID=MsG0280007207.01;Name=MsG0280007207.01
Chr2 mRNA 11940845 11943824 11940845 ID=MsG0280007207.01.T01;Parent=MsG0280007207.01;Name=MsG0280007207.01.T01;_AED=0.47;_eAED=0.50;_QI=0|0.5|0|1|1|1|3|0|344
Chr2 exon 11940845 11941369 11940845 ID=MsG0280007207.01.T01:exon:2774;Parent=MsG0280007207.01.T01
Chr2 exon 11942853 11943000 11942853 ID=MsG0280007207.01.T01:exon:2775;Parent=MsG0280007207.01.T01
Chr2 exon 11943463 11943824 11943463 ID=MsG0280007207.01.T01:exon:2776;Parent=MsG0280007207.01.T01
Chr2 CDS 11940845 11941369 11940845 ID=MsG0280007207.01.T01:cds;Parent=MsG0280007207.01.T01
Chr2 CDS 11942853 11943000 11942853 ID=MsG0280007207.01.T01:cds;Parent=MsG0280007207.01.T01
Chr2 CDS 11943463 11943824 11943463 ID=MsG0280007207.01.T01:cds;Parent=MsG0280007207.01.T01
Gene Sequence

>MsG0280007207.01.T01

ATGGCCGACGCATTCTTCTCCTTCTTCATCCTCCTCCCTCTCCTCCTCCTCCCCCTCCTCTACTTCCTCGTCCGCCCCCGCCCCATCAAGATCCCAATTACCAACCGCCACGTCTTCATCACCGGCGGCTCAAGCGGCATCGGCCTCGCCCTCGCCCATCGCGCCGCCGCCGATGGTGCACGTGTCTCCATCATGGCACGATCCCTCACGAAACTCGAAGAAGCAAAGAACTCCGTCAAGAACGCTACCGGCGTAGAAGTAGGGATATTCGCAGCGGATGTGAGAGACTATGATGCTGTGAAGAAAGTAGTTGATGAAGCTGGACCCATTGATGTGTTGTTGTTGAATCATGGTGTGTTTTATGCGTTGGAATTGGAGAAAATGGAATTGAGTGATGTGAAGTTTACGATTGATGTTAATTTGATGGGTTGTTTGAATATGATTAAAGCTGCTTTGCCTCAAATGAAGAATAGGAAAGATACTTTACCTGCTTCTATTGCTTTTGTTTCATCACAAGCTGGTCAGGTGGGAATTTATGGTTATGTAGCTTATTCGGCCAGTAAATTTGGCCTCCGTGGTTTAGCAGAAGCATTGCAACAAGAGGTTATAGGAGATAATATTCATGTCTCTATGATATTCCCTCCAGACACTGATACTCCTGGACTTGTAGAAGAAAATAAGAGAAAACCAGAGCTCACCAAAATCATTGCAGCCTCTTCTGGTTTTATGAAAGCCGATGAAGTTGCTCAGAAAGCTTTTGATGGCATAAGACGTGGCAGTTTTATCATTTCTTGCAATTTGGAGGGTATTGCGTTATCCCTAGCAACTTCAGGTTTATCCCCTCAGAGGTCATTCTTAATGGCATTTGTTGAGGTTATTACTGCTGGAATAATGCGTATAGCAGCACTATGTTTCCAGTGGAACTGGTATGGAAGTATAGAGAAGTGGCACAAGCAAAGGAAGTGTAAGTGCTGTTTACTTTTTAAAAACATATTTTGTTTTCATTTTCTAAAATCTGTTGTCAGTTTAAGTTGA
Protein sequence

>MsG0280007207.01.T01

MADAFFSFFILLPLLLLPLLYFLVRPRPIKIPITNRHVFITGGSSGIGLALAHRAAADGARVSIMARSLTKLEEAKNSVKNATGVEVGIFAADVRDYDAVKKVVDEAGPIDVLLLNHGVFYALELEKMELSDVKFTIDVNLMGCLNMIKAALPQMKNRKDTLPASIAFVSSQAGQVGIYGYVAYSASKFGLRGLAEALQQEVIGDNIHVSMIFPPDTDTPGLVEENKRKPELTKIIAASSGFMKADEVAQKAFDGIRRGSFIISCNLEGIALSLATSGLSPQRSFLMAFVEVITAGIMRIAALCFQWNWYGSIEKWHKQRKCKCCLLFKNIFCFHFLKSVVSLS*