AlfalfaGEDB | MsG0880046969.01

M. sativa cultivar ZhongmuNo.1 / MsG0880046969.01

KEGG: K01006
GO: GO:0003824 GO:0016310 GO:0016772
PFAM: PF02896

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046969.01.T01	KEH32262.1	94.904	157	8	0	10	166	136	292	6.10E-105	312
MsG0880046969.01.T02	KEH32262.1	94.904	157	8	0	10	166	136	292	6.10E-105	312

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046969.01.T01	Q42910	89.809	157	16	0	10	166	791	947	9.76E-94	294
MsG0880046969.01.T02	Q42910	89.809	157	16	0	10	166	791	947	9.76E-94	294

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046969.01.T02	A0A072URD9	94.904	157	8	0	10	166	136	292	2.91e-105	312

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048273.01	MsG0880046969.01	0.846011	2.838056e-59	4.818256e-56
MsG0080048274.01	MsG0880046969.01	0.837440	5.190248e-57	6.742722e-54
MsG0080048401.01	MsG0880046969.01	0.800402	1.466014e-48	6.819965e-46
MsG0080048505.01	MsG0880046969.01	0.840398	8.905255e-58	1.266996e-54
MsG0080048528.01	MsG0880046969.01	0.810175	1.313197e-50	7.861177e-48
MsG0080048845.01	MsG0880046969.01	0.830511	2.818645e-55	2.975819e-52
MsG0080048887.01	MsG0880046969.01	0.834837	2.379015e-56	2.857187e-53
MsG0080048896.01	MsG0880046969.01	0.823709	1.197080e-53	1.038813e-50
MsG0080048900.01	MsG0880046969.01	0.833394	5.469105e-56	6.290176e-53
MsG0080048909.01	MsG0880046969.01	0.809271	2.054609e-50	1.200986e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046969.01.T01	MTR_4g118355	94.904	157	8	0	10	166	136	292	7.38e-109	312
MsG0880046969.01.T02	MTR_4g118355	94.904	157	8	0	10	166	136	292	7.38e-109	312

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046969.01.T01	AT4G15530	82.803	157	27	10	166	697	853	2.37e-90	281
MsG0880046969.01.T01	AT4G15530	82.803	157	27	10	166	697	853	2.37e-90	281
MsG0880046969.01.T01	AT4G15530	82.803	157	27	10	166	715	871	4.02e-90	281
MsG0880046969.01.T01	AT4G15530	82.803	157	27	10	166	796	952	1.18e-89	281
MsG0880046969.01.T01	AT4G15530	82.803	157	27	10	166	796	952	1.18e-89	281
MsG0880046969.01.T01	AT4G15530	82.803	157	27	10	166	803	959	1.23e-89	281
MsG0880046969.01.T01	AT4G15530	82.803	157	27	10	166	803	959	1.23e-89	281
MsG0880046969.01.T02	AT4G15530	82.803	157	27	10	166	697	853	2.37e-90	281
MsG0880046969.01.T02	AT4G15530	82.803	157	27	10	166	697	853	2.37e-90	281
MsG0880046969.01.T02	AT4G15530	82.803	157	27	10	166	715	871	4.02e-90	281

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Find 13 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACACCAAATACACCAAGACA+CGG	0.726623	8:-80512765	None:intergenic
ACTGGTGTGGAATTATATAT+AGG	0.448324	8:+80512795	MsG0880046969.01.T02:three_prime_UTR
ATACCGTGTCTTGGTGTATT+TGG	0.297849	8:+80512762	MsG0880046969.01.T02:three_prime_UTR
ATATAAAGTCTGATAAAGCA+AGG	0.608659	8:+80512571	MsG0880046969.01.T01:intron
CTTGATAGAAAATAAAGCAA+AGG	0.605614	8:+80512605	MsG0880046969.01.T01:intron
GCAGCTCAATTTGCAGCGTA+AGG	0.540463	8:+80512444	MsG0880046969.01.T01:CDS
GCTGCTGCAAGTCTAGCAAT+CGG	0.570121	8:-80512426	None:intergenic
GTATTTGGTGTATAAGACAC+TGG	0.631881	8:+80512777	MsG0880046969.01.T02:three_prime_UTR
TATTATACTGTTTCTGTCAA+GGG	0.486470	8:+80512473	MsG0880046969.01.T01:three_prime_UTR
TCAATTTGCAGCGTAAGGAA+CGG	0.609021	8:+80512449	MsG0880046969.01.T01:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTATTGACAACAACTGC+AGG	+	Chr8:80511968-80511987	MsG0880046969.01.T01:intron	30.0%
ACTGGTGTGGAATTATATAT+AGG	+	Chr8:80512795-80512814	MsG0880046969.01.T02:three_prime_UTR	30.0%
CATCAAAATTTGCACAGAAA+AGG	+	Chr8:80512019-80512038	MsG0880046969.01.T01:CDS	30.0%
GACATCAAGTGAGTTTAATA+AGG	+	Chr8:80511284-80511303	MsG0880046969.01.T01:CDS	30.0%
GGTTCCAAATGAAAAGAAAT+CGG	-	Chr8:80511550-80511569	None:intergenic	30.0%
TACTGTAACCAAATGTCATT+TGG	-	Chr8:80511584-80511603	None:intergenic	30.0%
TCATTTGCAATCTACACAAA+TGG	-	Chr8:80511525-80511544	None:intergenic	30.0%
TCTTCATTAAGCTATAAGGT+TGG	+	Chr8:80511340-80511359	MsG0880046969.01.T01:CDS	30.0%
TGGTAAGTTACCTTCAAATT+TGG	-	Chr8:80512059-80512078	None:intergenic	30.0%
ACAACAGTATGAGAAATCAC+CGG	-	Chr8:80511696-80511715	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	80511247	80512892	80511247	ID=MsG0880046969.01;Name=MsG0880046969.01
Chr8	mRNA	80511247	80512746	80511247	ID=MsG0880046969.01.T01;Parent=MsG0880046969.01;Name=MsG0880046969.01.T01;_AED=0.50;_eAED=0.51;_QI=0\|1\|0.83\|1\|0.8\|0.66\|6\|172\|169
Chr8	exon	80512422	80512520	80512422	ID=MsG0880046969.01.T01:exon:34626;Parent=MsG0880046969.01.T01
Chr8	exon	80512631	80512746	80512631	ID=MsG0880046969.01.T01:exon:34627;Parent=MsG0880046969.01.T01
Chr8	CDS	80511247	80511405	80511247	ID=MsG0880046969.01.T01:cds;Parent=MsG0880046969.01.T01
Chr8	CDS	80511534	80511671	80511534	ID=MsG0880046969.01.T01:cds;Parent=MsG0880046969.01.T01
Chr8	CDS	80511990	80512067	80511990	ID=MsG0880046969.01.T01:cds;Parent=MsG0880046969.01.T01
Chr8	CDS	80512189	80512280	80512189	ID=MsG0880046969.01.T01:cds;Parent=MsG0880046969.01.T01
Chr8	CDS	80512422	80512464	80512422	ID=MsG0880046969.01.T01:cds;Parent=MsG0880046969.01.T01
Chr8	three_prime_UTR	80512465	80512520	80512465	ID=MsG0880046969.01.T01:three_prime_utr;Parent=MsG0880046969.01.T01
Chr8	three_prime_UTR	80512631	80512746	80512631	ID=MsG0880046969.01.T01:three_prime_utr;Parent=MsG0880046969.01.T01
Chr8	mRNA	80511247	80512892	80511247	ID=MsG0880046969.01.T02;Parent=MsG0880046969.01;Name=MsG0880046969.01.T02;_AED=0.49;_eAED=0.50;_QI=0\|1\|0.8\|1\|1\|1\|5\|428\|169
Chr8	exon	80512422	80512892	80512422	ID=MsG0880046969.01.T02:exon:34628;Parent=MsG0880046969.01.T02
Chr8	CDS	80511247	80511405	80511247	ID=MsG0880046969.01.T02:cds;Parent=MsG0880046969.01.T02
Chr8	CDS	80511534	80511671	80511534	ID=MsG0880046969.01.T02:cds;Parent=MsG0880046969.01.T02
Chr8	CDS	80511990	80512067	80511990	ID=MsG0880046969.01.T02:cds;Parent=MsG0880046969.01.T02
Chr8	CDS	80512189	80512280	80512189	ID=MsG0880046969.01.T02:cds;Parent=MsG0880046969.01.T02
Chr8	CDS	80512422	80512464	80512422	ID=MsG0880046969.01.T02:cds;Parent=MsG0880046969.01.T02
Chr8	three_prime_UTR	80512465	80512892	80512465	ID=MsG0880046969.01.T02:three_prime_utr;Parent=MsG0880046969.01.T02

Gene Sequence

>MsG0880046969.01.T01

ATGATAAGCTCGATCCTTTTTAACCGACAGGAATTAAGACATCAAGTGAGTTTAATAAGGAACGTTGCTGAGAAAGTGTTCTCTGAGATGGGCTCTTCATTAAGCTATAAGGTTGGAACTATGATAGAAGTTCCAAGAGCTGCACTAGTTGCAGATGAGATTGCAAATGAAGCCGATTTCTTTTCATTTGGAACCAACGACCTTACCCAAATGACATTTGGTTACAGTAGAGATGATGTTAGTAAGTTTCTTCCTACATACCTATCCGCAGGGATTTTGCAGCATGATCCATTTGAGGTACTTGACCAGAAAGGTGTGGGTCAACTCATCAAAATTTGCACAGAAAAGGGTCGTGCTGCTAAACCAAATTTGAAGGTTGGAATATGTGGAGAGCATGGCGGGGAGCCTTCTTCTGTTGCATTCTTTGCTCAACTTGGACTTGACTATGTCTCATGTTCACCATTCAGGGTTCCGATTGCTAGACTTGCAGCAGCTCAATTTGCAGCGTAA

>MsG0880046969.01.T02

Protein sequence

>MsG0880046969.01.T01

MISSILFNRQELRHQVSLIRNVAEKVFSEMGSSLSYKVGTMIEVPRAALVADEIANEADFFSFGTNDLTQMTFGYSRDDVSKFLPTYLSAGILQHDPFEVLDQKGVGQLIKICTEKGRAAKPNLKVGICGEHGGEPSSVAFFAQLGLDYVSCSPFRVPIARLAAAQFAA*

>MsG0880046969.01.T02

MISSILFNRQELRHQVSLIRNVAEKVFSEMGSSLSYKVGTMIEVPRAALVADEIANEADFFSFGTNDLTQMTFGYSRDDVSKFLPTYLSAGILQHDPFEVLDQKGVGQLIKICTEKGRAAKPNLKVGICGEHGGEPSSVAFFAQLGLDYVSCSPFRVPIARLAAAQFAA*