AlfalfaGEDB | MsG0880047120.01

M. sativa cultivar ZhongmuNo.1 / MsG0880047120.01

KEGG: -
GO: GO:0003700 GO:0006355 GO:0008270 GO:0043565
PFAM: PF00320

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047120.01.T01	XP_013458302.1	95.139	144	3	1	33	172	1	144	2.93E-92	275

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047120.01.T01	Q9FJ10	54.422	147	51	4	34	172	1	139	1.12E-40	137

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047120.01.T01	A0A072UTE2	95.139	144	3	1	33	172	1	144	1.40e-92	275

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0880047120.01	0.891485	3.805239e-74	3.342818e-70
MsG0080048700.01	MsG0880047120.01	0.804597	2.001099e-49	1.036004e-46
MsG0080048856.01	MsG0880047120.01	0.869215	3.660011e-66	1.362533e-62
MsG0080048952.01	MsG0880047120.01	0.839823	1.258029e-57	1.758062e-54
MsG0080049014.01	MsG0880047120.01	0.819892	9.145952e-53	7.128140e-50
MsG0180000001.01	MsG0880047120.01	0.838852	2.248121e-57	3.049350e-54
MsG0180000065.01	MsG0880047120.01	0.855791	4.977678e-62	1.162814e-58
MsG0180000123.01	MsG0880047120.01	0.801248	9.845819e-49	4.679657e-46
MsG0180000139.01	MsG0880047120.01	0.835521	1.598828e-56	1.959907e-53
MsG0180000142.01	MsG0880047120.01	0.834002	3.854533e-56	4.515034e-53

Showing 1 to 10 of 521 entries

Previous1 2 3 4 5…53Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047120.01.T01	MTR_4g121110	95.139	144	3	1	33	172	1	144	3.54e-96	275
MsG0880047120.01.T01	MTR_7g112330	51.754	114	48	4	61	172	21	129	9.12e-30	106
MsG0880047120.01.T01	MTR_1g016170	63.265	49	18	0	58	106	183	231	1.18e-16	75.9
MsG0880047120.01.T01	MTR_4g126350	68.421	38	12	0	54	91	178	215	1.15e-12	65.1
MsG0880047120.01.T01	MTR_5g020230	50.000	64	27	1	40	98	95	158	1.27e-12	63.9
MsG0880047120.01.T01	MTR_2g038720	76.667	30	7	0	62	91	164	193	8.59e-12	62.4
MsG0880047120.01.T01	MTR_8g077510	64.865	37	13	0	62	98	125	161	1.25e-11	61.2
MsG0880047120.01.T01	MTR_1g094930	37.209	86	42	3	20	94	95	179	9.77e-11	58.9

Showing 1 to 8 of 8 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047120.01.T01	AT5G49300	54.422	147	51	4	34	172	1	139	1.14e-41	137
MsG0880047120.01.T01	AT3G06740	56.429	140	43	6	39	172	22	149	3.12e-40	133
MsG0880047120.01.T01	AT3G16870	38.860	193	69	5	25	172	2	190	5.90e-30	108
MsG0880047120.01.T01	AT4G16141	43.902	164	38	7	59	168	34	197	3.02e-26	99.4
MsG0880047120.01.T01	AT5G26930	67.442	43	13	1	62	103	26	68	4.43e-16	70.9
MsG0880047120.01.T01	AT5G56860	70.732	41	12	0	55	95	223	263	8.34e-15	71.2
MsG0880047120.01.T01	AT2G18380	50.746	67	29	1	62	124	92	158	5.15e-14	67.4
MsG0880047120.01.T01	AT4G26150	77.419	31	7	0	62	92	199	229	1.13e-12	65.1
MsG0880047120.01.T01	AT4G36620	67.568	37	12	0	62	98	75	111	1.67e-12	63.5
MsG0880047120.01.T01	AT3G50870	47.692	65	33	1	62	126	152	215	3.45e-12	63.5

Showing 1 to 10 of 10 entries

Previous1Next

Find 51 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCCTCTATGGCGTGG+TGG	0.657560	8:+82208066	MsG0880047120.01.T01:CDS
AAAATCAGAATCGAAAATGG+TGG	0.631988	8:+82207817	MsG0880047120.01.T01:CDS
AACAGTGGCGGTGGCAATGT+TGG	0.554718	8:+82208294	MsG0880047120.01.T01:CDS
AACGAAGAAGGAACAAGAAA+GGG	0.398579	8:+82208261	MsG0880047120.01.T01:CDS
AAGAAAACATGTGCTGATTG+CGG	0.603128	8:+82208036	MsG0880047120.01.T01:CDS
AAGAAGAAGAGAGCGATATT+AGG	0.241089	8:+82208222	MsG0880047120.01.T01:CDS
AAGCAGAGATTATTGAATTT+AGG	0.186034	8:+82208333	MsG0880047120.01.T01:CDS
AAGCTCGTTATTTCCCGACG+GGG	0.677439	8:-82205514	None:intergenic
AATGAATGAATGTTCAATTT+TGG	0.163062	8:+82208659	MsG0880047120.01.T01:three_prime_UTR
AATGCAGCAACCAGCGAGTC+CGG	0.458749	8:+82205540	MsG0880047120.01.T01:CDS

Showing 1 to 10 of 51 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCAGAATCGAAAATGG+TGG	+	Chr8:82207817-82207836	MsG0880047120.01.T01:CDS	30.0%
AAACACCTGACCTTTATAAA+TGG	-	Chr8:82207591-82207610	None:intergenic	30.0%
AACACCTGACCTTTATAAAT+GGG	-	Chr8:82207590-82207609	None:intergenic	30.0%
AAGAGTTCATCATCTTTCAA+TGG	+	Chr8:82205723-82205742	MsG0880047120.01.T01:intron	30.0%
AAGTACCTAAGATACATGAA+CGG	+	Chr8:82207216-82207235	MsG0880047120.01.T01:intron	30.0%
AATGGAGTCTAGTAAAGTAT+TGG	+	Chr8:82205741-82205760	MsG0880047120.01.T01:intron	30.0%
AGGAATTCATTGGATGAATT+GGG	-	Chr8:82205671-82205690	None:intergenic	30.0%
ATGGAAATTTATCACAGAAC+CGG	-	Chr8:82205562-82205581	None:intergenic	30.0%
CAAAAAATAAACTCTTGGAG+CGG	-	Chr8:82205854-82205873	None:intergenic	30.0%
CATTGAACATTGTACGATTT+AGG	+	Chr8:82207552-82207571	MsG0880047120.01.T01:intron	30.0%

Showing 1 to 10 of 244 entries

Previous1 2 3 4 5…25Next

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	82205486	82208687	82205486	ID=MsG0880047120.01;Name=MsG0880047120.01
Chr8	mRNA	82205486	82208687	82205486	ID=MsG0880047120.01.T01;Parent=MsG0880047120.01;Name=MsG0880047120.01.T01;_AED=0.24;_eAED=0.24;_QI=0\|0.66\|0.5\|0.75\|1\|1\|4\|229\|172
Chr8	exon	82205486	82205561	82205486	ID=MsG0880047120.01.T01:exon:35077;Parent=MsG0880047120.01.T01
Chr8	exon	82207813	82207856	82207813	ID=MsG0880047120.01.T01:exon:35078;Parent=MsG0880047120.01.T01
Chr8	exon	82207976	82208104	82207976	ID=MsG0880047120.01.T01:exon:35079;Parent=MsG0880047120.01.T01
Chr8	exon	82208189	82208687	82208189	ID=MsG0880047120.01.T01:exon:35080;Parent=MsG0880047120.01.T01
Chr8	CDS	82205486	82205561	82205486	ID=MsG0880047120.01.T01:cds;Parent=MsG0880047120.01.T01
Chr8	CDS	82207813	82207856	82207813	ID=MsG0880047120.01.T01:cds;Parent=MsG0880047120.01.T01
Chr8	CDS	82207976	82208104	82207976	ID=MsG0880047120.01.T01:cds;Parent=MsG0880047120.01.T01
Chr8	CDS	82208189	82208458	82208189	ID=MsG0880047120.01.T01:cds;Parent=MsG0880047120.01.T01
Chr8	three_prime_UTR	82208459	82208687	82208459	ID=MsG0880047120.01.T01:three_prime_utr;Parent=MsG0880047120.01.T01

Gene Sequence

>MsG0880047120.01.T01

ATGCCCAACAGTTGCCGTGAGAAAGGACCCCCGTCGGGAAATAACGAGCTTAAAAATGCAGCAACCAGCGAGTCCGAATCAAAATCAGAATCGAAAATGGTGGTTGATCACAGTGATAAGGTATCAGACGGTGAAGATTCAAACCCTAACGCCGCCGTTTCATCAGATAACAACAATCCAAAGAAAACATGTGCTGATTGCGGAACTTCCAAAACTCCTCTATGGCGTGGTGGTCCTGCTGGTCCAAAGTCACTGTGCAATGCTTGCGGGATCAGGAGCAGGAAGAAGAAGAGAGCGATATTAGGGATAAGCAAAGGAAACAACGAAGAAGGAACAAGAAAGGGGAAAAAGAGTAACAGTGGCGGTGGCAATGTTGGTGATAATTTGAACATGAAGCAGAGATTATTGAATTTAGGGAAAGAAGTGTTTATGAATCGATCACATTGGAAGAAATTGGGAGAAGATGAACAAGCTGCTGTGTTGTTGATGTCTCTTTCTTATGGATCTGTTTATGCCTAA

Protein sequence

>MsG0880047120.01.T01

MPNSCREKGPPSGNNELKNAATSESESKSESKMVVDHSDKVSDGEDSNPNAAVSSDNNNPKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGISKGNNEEGTRKGKKSNSGGGNVGDNLNMKQRLLNLGKEVFMNRSHWKKLGEDEQAAVLLMSLSYGSVYA*