AlfalfaGEDB | MsG0880047266.01

M. sativa cultivar ZhongmuNo.1 / MsG0880047266.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047266.01.T01	XP_003609890.1	71.658	187	20	3	1	155	1	186	9.17E-48	167

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047266.01.T01	G7JR20	71.658	187	20	3	1	155	1	186	4.38e-48	167

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048016.01	MsG0880047266.01	0.812561	3.984387e-51	2.541611e-48
MsG0180001064.01	MsG0880047266.01	0.808175	3.524523e-50	2.001443e-47
MsG0180001100.01	MsG0880047266.01	0.823524	1.322299e-53	1.141338e-50
MsG0280008738.01	MsG0880047266.01	0.801814	7.537721e-49	3.634216e-46
MsG0280008932.01	MsG0880047266.01	0.814071	1.856406e-51	1.233322e-48
MsG0380014538.01	MsG0880047266.01	0.823109	1.652921e-53	1.410145e-50
MsG0380014727.01	MsG0880047266.01	0.820845	5.531208e-53	4.426375e-50
MsG0380014866.01	MsG0880047266.01	0.812740	3.641129e-51	2.333610e-48
MsG0380016740.01	MsG0880047266.01	0.803826	2.896562e-49	1.470171e-46
MsG0380017201.01	MsG0880047266.01	0.821932	3.104332e-53	2.561022e-50

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047266.01.T01	MTR_4g124080	71.658	187	20	3	1	155	1	186	1.11e-51	167

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 43 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGAAACAAGAGAAGAAAA+AGG	0.361365	8:+83975912	MsG0880047266.01.T01:CDS
ACAACCTACATCTCCGGCGT+TGG	0.506506	8:+83975356	MsG0880047266.01.T01:CDS
ACAATAACAACCACCGAAAA+AGG	0.244300	8:+83975247	MsG0880047266.01.T01:five_prime_UTR
ACGGGTGTGAGTCCCAACGC+CGG	0.672451	8:-83975369	None:intergenic
ACTGCACGTGACCCTCATCA+TGG	0.571166	8:-83975442	None:intergenic
AGCTAGAGAAAGTAAGAGCA+GGG	0.546581	8:+83975869	MsG0880047266.01.T01:CDS
AGGAACAACGCCATGAGAAC+GGG	0.451237	8:-83975387	None:intergenic
AGTCCCAACGCCGGAGATGT+AGG	0.532391	8:-83975360	None:intergenic
ATAGACACCCTCACTCTCCG+AGG	0.695788	8:-83975407	None:intergenic
ATCACTTGACTCAGATTCAG+AGG	0.579827	8:-83975995	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATCTTTATTCAGAATCTGA+AGG	-	Chr8:83975694-83975713	None:intergenic	30.0%
ACAATAACAACCACCGAAAA+AGG	+	Chr8:83975247-83975266	MsG0880047266.01.T01:five_prime_UTR	35.0%
CCTAATCTACCTAATCTCTT+GGG	+	Chr8:83975585-83975604	MsG0880047266.01.T01:intron	35.0%
TCCTAATCTACCTAATCTCT+TGG	+	Chr8:83975584-83975603	MsG0880047266.01.T01:intron	35.0%
TTACATGAATAGATGCAGGA+TGG	+	Chr8:83975826-83975845	MsG0880047266.01.T01:intron	35.0%
AGCTAGAGAAAGTAAGAGCA+GGG	+	Chr8:83975869-83975888	MsG0880047266.01.T01:CDS	40.0%
ATCACTTGACTCAGATTCAG+AGG	-	Chr8:83975998-83976017	None:intergenic	40.0%
CCCAAGAGATTAGGTAGATT+AGG	-	Chr8:83975588-83975607	None:intergenic	40.0%
GCTTCTGAATACCTCACTTA+GGG	+	Chr8:83975550-83975569	MsG0880047266.01.T01:CDS	40.0%
TGAAGTTGACCCAAGAGATT+AGG	-	Chr8:83975597-83975616	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	83975235	83976062	83975235	ID=MsG0880047266.01;Name=MsG0880047266.01
Chr8	mRNA	83975235	83976062	83975235	ID=MsG0880047266.01.T01;Parent=MsG0880047266.01;Name=MsG0880047266.01.T01;_AED=0.48;_eAED=0.48;_QI=91\|1\|1\|1\|1\|1\|2\|0\|156
Chr8	exon	83975235	83975571	83975235	ID=MsG0880047266.01.T01:exon:35843;Parent=MsG0880047266.01.T01
Chr8	exon	83975838	83976062	83975838	ID=MsG0880047266.01.T01:exon:35844;Parent=MsG0880047266.01.T01
Chr8	five_prime_UTR	83975235	83975325	83975235	ID=MsG0880047266.01.T01:five_prime_utr;Parent=MsG0880047266.01.T01
Chr8	CDS	83975326	83975571	83975326	ID=MsG0880047266.01.T01:cds;Parent=MsG0880047266.01.T01
Chr8	CDS	83975838	83976062	83975838	ID=MsG0880047266.01.T01:cds;Parent=MsG0880047266.01.T01

Gene Sequence

>MsG0880047266.01.T01

ATGGAGGTTTCCGGCACCGTTCTCCGTCGTACAACCTACATCTCCGGCGTTGGGACTCACACCCGTTCTCATGGCGTTGTTCCTCGGAGAGTGAGGGTGTCTATGGGGTCTGGTTTCCATGATGAGGGTCACGTGCAGTATTACCAAGACGTGAAGAAAAAAACAGAAACTGTTATCATAAGCAACAAGAAGAAGATGAAATTGCTCAAACGTCTCCTAAAAACGCTTCTGAATACCTCACTTAGGATGCAGGATGGTGGTGAAGAATTACTTAGAGAGCTAGAGAAAGTAAGAGCAGGGGAGAAGGAATTGAAGAAAAAAATGAAACAAGAGAAGAAAAAGGCTAAACTAAAACCCTCCAAGATGAAAACTTGTAATAAATCTGAATCATTCTCGTCTTCATCCTCTGAATCTGAGTCAAGTGATAGTGATTGTGATGTTGCCACAAAGCCGGTGGATGAATGGAATTGA

Protein sequence

>MsG0880047266.01.T01

MEVSGTVLRRTTYISGVGTHTRSHGVVPRRVRVSMGSGFHDEGHVQYYQDVKKKTETVIISNKKKMKLLKRLLKTLLNTSLRMQDGGEELLRELEKVRAGEKELKKKMKQEKKKAKLKPSKMKTCNKSESFSSSSSESESSDSDCDVATKPVDEWN*