AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017201.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017201.01.T01 MTR_3g102830 92.683 410 8 2 156 565 353 740 0.0 756
MsG0380017201.01.T01 MTR_3g102830 60.829 217 35 3 1 167 57 273 3.56e-61 218
MsG0380017201.01.T01 MTR_8g100040 90.976 410 15 2 156 565 352 739 0.0 743
MsG0380017201.01.T01 MTR_8g100040 58.986 217 39 3 1 167 56 272 8.85e-59 211
MsG0380017201.01.T01 MTR_3g498725 86.585 410 33 2 156 565 348 735 0.0 713
MsG0380017201.01.T01 MTR_3g498725 74.483 145 18 1 42 167 124 268 6.89e-53 194
MsG0380017201.01.T01 MTR_7g012820 49.673 459 150 8 167 565 275 712 2.30e-136 419
MsG0380017201.01.T01 MTR_7g012820 49.673 459 150 8 167 565 346 783 1.11e-135 419
MsG0380017201.01.T01 MTR_6g013660 49.127 458 152 7 168 565 343 779 2.68e-134 415
MsG0380017201.01.T01 MTR_3g106160 45.842 469 174 5 156 565 344 791 3.79e-131 407
MsG0380017201.01.T01 MTR_3g098310 50.591 423 166 7 154 565 392 782 5.95e-129 396
MsG0380017201.01.T01 MTR_3g098310 50.591 423 166 7 154 565 392 782 3.00e-127 396
MsG0380017201.01.T01 MTR_4g109450 45.085 468 178 6 156 565 255 701 1.79e-121 378
MsG0380017201.01.T01 MTR_4g109450 45.085 468 178 6 156 565 255 701 9.35e-121 378
MsG0380017201.01.T01 MTR_7g028970 45.778 450 165 7 174 565 273 701 1.15e-115 365
MsG0380017201.01.T01 MTR_3g461000 48.872 399 125 4 167 565 275 594 2.43e-115 361
MsG0380017201.01.T01 MTR_3g461000 38.158 152 68 3 42 167 34 185 1.74e-18 89.7
MsG0380017201.01.T01 MTR_2g099075 50.625 160 74 1 407 566 143 297 6.79e-47 171
MsG0380017201.01.T01 MTR_2g006950 39.744 234 123 3 333 566 11 226 1.05e-44 167
MsG0380017201.01.T01 MTR_1g076440 75.758 99 21 1 42 140 7 102 7.22e-37 139
MsG0380017201.01.T01 MTR_1g076440 71.951 82 23 0 484 565 147 228 5.49e-29 117
MsG0380017201.01.T01 MTR_5g098360 40.000 95 56 1 422 516 74 167 9.31e-19 84.3
MsG0380017201.01.T01 MTR_1614s0010 64.062 64 23 0 502 565 1 64 2.11e-16 78.2
MsG0380017201.01.T01 MTR_6g048860 84.091 44 3 1 124 167 110 149 4.29e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017201.01.T01 AT5G50920 83.902 410 44 2 156 565 350 737 0.0 692
MsG0380017201.01.T01 AT5G50920 71.034 145 22 3 42 167 127 270 6.73e-48 179
MsG0380017201.01.T01 AT3G48870 80.488 410 58 2 156 565 371 758 0.0 663
MsG0380017201.01.T01 AT3G48870 69.655 145 25 2 42 167 147 291 4.60e-44 168
MsG0380017201.01.T01 AT3G48870 80.488 410 58 2 156 565 371 758 0.0 663
MsG0380017201.01.T01 AT3G48870 69.655 145 25 2 42 167 147 291 4.60e-44 168
MsG0380017201.01.T01 AT3G48870 80.488 410 58 2 156 565 340 727 0.0 663
MsG0380017201.01.T01 AT3G48870 69.655 145 25 2 42 167 116 260 4.61e-44 168
MsG0380017201.01.T01 AT3G48870 80.488 410 58 2 156 565 371 758 0.0 663
MsG0380017201.01.T01 AT3G48870 69.655 145 25 2 42 167 147 291 4.60e-44 168
MsG0380017201.01.T01 AT5G15450 48.614 469 161 7 156 565 330 777 2.34e-135 418
MsG0380017201.01.T01 AT2G25140 47.450 451 157 5 174 565 353 782 1.46e-134 416
MsG0380017201.01.T01 AT5G51070 51.951 410 157 4 168 565 375 756 1.45e-129 402
MsG0380017201.01.T01 AT1G74310 46.309 447 164 6 174 565 273 698 1.21e-122 380
MsG0380017201.01.T01 AT1G74310 46.309 447 164 6 174 565 273 698 1.38e-121 380
MsG0380017201.01.T01 AT4G14670 40.185 433 171 9 158 525 214 623 5.34e-89 287
MsG0380017201.01.T01 AT3G45450 69.072 97 21 1 166 262 233 320 1.44e-31 125
MsG0380017201.01.T01 AT3G45450 92.000 50 4 0 42 91 34 83 1.08e-20 94.0

Find 157 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCACGCGAGAGTCTTTC+AGG 0.146397 3:-93243889 None:intergenic
GCTTGACATGAGCGAATTTA+TGG 0.159830 3:+93247302 MsG0380017201.01.T01:CDS
CAACATGATGCTTCAAATTC+TGG 0.187197 3:+93247470 MsG0380017201.01.T01:CDS
CGGATCTGAGCACCTGCTTT+TGG 0.194234 3:+93244322 MsG0380017201.01.T01:CDS
GCAAATTTGTTGGTTCTTAT+TGG 0.196654 3:+93243818 MsG0380017201.01.T01:CDS
CTCTGCTAGCTTGGTCAAAT+TGG 0.202101 3:-93244626 None:intergenic
ACCTTACACAAACGCATTAT+TGG 0.236179 3:+93247102 MsG0380017201.01.T01:CDS
TCAAGTCCTCTTGCTTCTTC+AGG 0.256167 3:-93246542 None:intergenic
GTTGGCTCTGGCACTTTAAC+TGG 0.258175 3:-93245899 None:intergenic
TGCTAAGGTTCTAAAGTCTA+TGG 0.277785 3:+93243859 MsG0380017201.01.T01:CDS
AGACAAGATCTTTCATTCTA+AGG 0.311568 3:+93243641 MsG0380017201.01.T01:CDS
GTGGAAGTTGAAAAGATAAT+TGG 0.327154 3:+93243905 MsG0380017201.01.T01:CDS
TCCGCGTGCCAAGAGAGTTT+TGG 0.332554 3:+93243967 MsG0380017201.01.T01:CDS
GTGAGGGTGCTGACAATGTT+GGG 0.335259 3:+93244545 MsG0380017201.01.T01:CDS
AAGCTGGCAATCGGCCGGTT+AGG 0.355998 3:-93247189 None:intergenic
CTCTTGGCACGCGGAGTAAA+CGG 0.356129 3:-93243959 None:intergenic
TTTCTAGGTCACAATTATAT+CGG 0.363485 3:+93244302 MsG0380017201.01.T01:intron
TCAAAGAGTACAACAGTATA+GGG 0.366004 3:-93247417 None:intergenic
CGGAGGTGAACCAATGAGTT+TGG 0.370786 3:-93247340 None:intergenic
TAAATACTTATGCAGTGTAT+AGG 0.372611 3:+93245809 MsG0380017201.01.T01:intron
AAGCCCTTTCAATATTTGTA+TGG 0.382216 3:-93245933 None:intergenic
TTAGAATGAAAGATCTTGTC+TGG 0.385607 3:-93243639 None:intergenic
GTAGTATGAGGCCAATGTTT+TGG 0.397446 3:-93247253 None:intergenic
AGCTGTCATATCAATATATC+AGG 0.398244 3:+93246020 MsG0380017201.01.T01:CDS
GGATAAAGAAATGGATCTTA+AGG 0.405165 3:+93246900 MsG0380017201.01.T01:CDS
TCGGCGGATAGCACGGCTAA+TGG 0.414424 3:-93247145 None:intergenic
GGAGGTTAGGCAGATAGTTA+AGG 0.414639 3:+93246568 MsG0380017201.01.T01:CDS
AAGGCTTGGTTATTGTTGTC+TGG 0.416624 3:+93246161 MsG0380017201.01.T01:CDS
ACCAATAATGCGTTTGTGTA+AGG 0.422221 3:-93247103 None:intergenic
ATGCCAACTTTGGAGGAGTA+TGG 0.429557 3:+93244601 MsG0380017201.01.T01:CDS
TCAACTGAGACTTTATCAAC+AGG 0.436921 3:-93247048 None:intergenic
ATTGGTGAAGGCACTGGTAT+TGG 0.438124 3:+93243836 MsG0380017201.01.T01:CDS
ACATTGGCCTCATACTACTT+TGG 0.440804 3:+93247258 MsG0380017201.01.T01:CDS
GATGAAGTGCACACTCTCAT+TGG 0.443128 3:+93245311 MsG0380017201.01.T01:CDS
ATCAAAGAGTACAACAGTAT+AGG 0.446881 3:-93247418 None:intergenic
GTTGGGGCTACTGTTGGCTC+TGG 0.447309 3:+93244562 MsG0380017201.01.T01:CDS
GTTTCACTCACAGTTGGCTC+TGG 0.448062 3:-93245911 None:intergenic
GTTCTTATTGGTGAAGGCAC+TGG 0.448405 3:+93243830 MsG0380017201.01.T01:CDS
CATATTGTTGCCGCCTGGAC+TGG 0.450552 3:+93247021 MsG0380017201.01.T01:CDS
GGGTCTTCTTCGAGAGGGTG+AGG 0.450707 3:+93244343 MsG0380017201.01.T01:CDS
AAGATAATTGGAAGGGGTAG+TGG 0.451151 3:+93243917 MsG0380017201.01.T01:CDS
ATCAAATCTATAGCTTTGTC+AGG 0.451675 3:-93246387 None:intergenic
GTCAATTGACTGAGGCAGTT+CGG 0.454440 3:+93247388 MsG0380017201.01.T01:CDS
TAACCCCGCGTAGTGGGAAA+AGG 0.456099 3:+93246142 MsG0380017201.01.T01:CDS
GGTGAGGGTGCTGACAATGT+TGG 0.456250 3:+93244544 MsG0380017201.01.T01:CDS
AGTTACCTCCTCTGCTAGCT+TGG 0.457680 3:-93244635 None:intergenic
CAAACTCATTGGTTCACCTC+CGG 0.462565 3:+93247341 MsG0380017201.01.T01:CDS
AGCAAGGCAGAGAGTGAGGC+AGG 0.463527 3:+93246961 MsG0380017201.01.T01:CDS
AGCATCATGTTGAAGACATC+AGG 0.464962 3:-93247459 None:intergenic
GAGGACTTGAAAAGGAGGTT+AGG 0.468047 3:+93246555 MsG0380017201.01.T01:CDS
AGCTGGCAATCGGCCGGTTA+GGG 0.470925 3:-93247188 None:intergenic
GCTCTGGCACTTTAACTGGC+TGG 0.472399 3:-93245895 None:intergenic
TCGGAACAGAGCAAATTTGT+TGG 0.473525 3:+93243808 MsG0380017201.01.T01:intron
GAGAGTGAGGCAGGAGATGT+AGG 0.476103 3:+93246970 MsG0380017201.01.T01:CDS
TGGAATCTCCTCTCCAAAGC+TGG 0.479271 3:-93245875 None:intergenic
AAACTCATTGGTTCACCTCC+GGG 0.479765 3:+93247342 MsG0380017201.01.T01:CDS
ATCTGATCGCCTTCTCAAGA+TGG 0.482687 3:+93247074 MsG0380017201.01.T01:CDS
TAATAGCAAGATGCCAACTT+TGG 0.484716 3:+93244591 MsG0380017201.01.T01:CDS
TAATAAGCAAGGGGTGGTAG+AGG 0.486629 3:+93243683 MsG0380017201.01.T01:CDS
CACACAGTCTCCAAACTCAT+TGG 0.487127 3:+93247330 MsG0380017201.01.T01:CDS
GACAATGTTGGGGCTACTGT+TGG 0.488557 3:+93244556 MsG0380017201.01.T01:CDS
AGAGCTACGGGATAAAGAAA+TGG 0.489616 3:+93246891 MsG0380017201.01.T01:CDS
GAAAAGATGAAGCTGGCAAT+CGG 0.492611 3:-93247198 None:intergenic
GATCTGAAGAAGCCATGATT+CGG 0.495790 3:+93247280 MsG0380017201.01.T01:CDS
ATGCTTCAAATTCTGGAAGA+TGG 0.495872 3:+93247477 MsG0380017201.01.T01:CDS
TGAGAGTTCCAAAACTCTCT+TGG 0.497854 3:-93243975 None:intergenic
CACGAGCTCGGCGGATAGCA+CGG 0.498274 3:-93247152 None:intergenic
AGAAGCAAGAGGACTTGAAA+AGG 0.502649 3:+93246547 MsG0380017201.01.T01:CDS
GCTCATGTCAAGCCGAATCA+TGG 0.503230 3:-93247292 None:intergenic
ATCAACAGGGATACCAGTCC+AGG 0.503737 3:-93247034 None:intergenic
TCTAAGGTGCTCACTCAGAT+TGG 0.504328 3:+93243657 MsG0380017201.01.T01:CDS
CAAGAGCATCATCGGTATAA+CGG 0.506415 3:-93245985 None:intergenic
TGAATAGGCTGGAGAGCTAC+GGG 0.510340 3:+93246879 MsG0380017201.01.T01:intron
ATAGATTTGATTGACGAAGC+TGG 0.513521 3:+93246399 MsG0380017201.01.T01:CDS
CTGAATAGGCTGGAGAGCTA+CGG 0.514789 3:+93246878 MsG0380017201.01.T01:intron
TTCAGATCCAAAGTAGTATG+AGG 0.520690 3:-93247265 None:intergenic
GTGCATGTTGAAGTCGAACT+CGG 0.521141 3:-93246425 None:intergenic
TGTATGGTTTCACTCACAGT+TGG 0.521619 3:-93245917 None:intergenic
GTGCCATACTCCTCCAAAGT+TGG 0.521933 3:-93244604 None:intergenic
GGTCTTCTTCGAGAGGGTGA+GGG 0.523904 3:+93244344 MsG0380017201.01.T01:CDS
CTCAGTCAATTGACCACCCT+CGG 0.523973 3:-93247379 None:intergenic
TCGCAATCAAGAATTTGAAA+AGG 0.526527 3:+93246607 MsG0380017201.01.T01:CDS
TACAACATATTGTTGCCGCC+TGG 0.526555 3:+93247016 MsG0380017201.01.T01:CDS
CCACAACACTAGATGAATAC+AGG 0.528109 3:+93245834 MsG0380017201.01.T01:CDS
GCTAAGGTTCTAAAGTCTAT+GGG 0.528708 3:+93243860 MsG0380017201.01.T01:CDS
AAACCATACAAATATTGAAA+GGG 0.529564 3:+93245930 MsG0380017201.01.T01:CDS
TTGTTGGTTCTTATTGGTGA+AGG 0.533357 3:+93243824 MsG0380017201.01.T01:CDS
GCTATCCGCCGAGCTCGTGT+TGG 0.533622 3:+93247156 MsG0380017201.01.T01:CDS
GTGCACACTCTCATTGGAGC+AGG 0.534139 3:+93245317 MsG0380017201.01.T01:CDS
TTGGACTTAAGAACCCTAAC+CGG 0.535590 3:+93247175 MsG0380017201.01.T01:CDS
CTCGAAGAAGACCCAAAAGC+AGG 0.536165 3:-93244334 None:intergenic
TCTTGCTAGAGGTGAACTAC+AGG 0.537146 3:+93245385 MsG0380017201.01.T01:CDS
GGTTCACCTCCGGGATATGT+TGG 0.540586 3:+93247351 MsG0380017201.01.T01:CDS
TTGGAGGAAGCTCGCCAACT+TGG 0.541008 3:+93243998 MsG0380017201.01.T01:CDS
TAGCAAGATGCCAACTTTGG+AGG 0.541747 3:+93244594 MsG0380017201.01.T01:CDS
CCGCGTAGTGGGAAAAGGCT+TGG 0.543178 3:+93246147 MsG0380017201.01.T01:CDS
AGGCACTGGTATTGGTGCTA+AGG 0.545166 3:+93243844 MsG0380017201.01.T01:CDS
GTCTGAGTTGGCCAAAACAT+TGG 0.548843 3:+93247242 MsG0380017201.01.T01:CDS
AGATGAAGCTGGCAATCGGC+CGG 0.553474 3:-93247194 None:intergenic
AGCAGCTACAAGAGCATCAT+CGG 0.556339 3:-93245993 None:intergenic
CAGATTGGTACTAATAAGCA+AGG 0.556647 3:+93243672 MsG0380017201.01.T01:CDS
AGTTCACCTCTAGCAAGAGC+TGG 0.557640 3:-93245380 None:intergenic
GAGGGAACAGGTTATTCGAA+TGG 0.558102 3:+93244519 MsG0380017201.01.T01:intron
GAACAGGTTATTCGAATGGT+TGG 0.558387 3:+93244523 MsG0380017201.01.T01:intron
TGCATGTTGAAGTCGAACTC+GGG 0.563322 3:-93246424 None:intergenic
CATGTTTAACCCCGCGTAGT+GGG 0.564001 3:+93246136 MsG0380017201.01.T01:CDS
GATGAGCAAGGCAGAGAGTG+AGG 0.564477 3:+93246957 MsG0380017201.01.T01:CDS
TGGAGCAGGAGCAGCTGAAG+GGG 0.565092 3:+93245331 MsG0380017201.01.T01:CDS
ATTGGAGCAGGAGCAGCTGA+AGG 0.567685 3:+93245329 MsG0380017201.01.T01:CDS
TATGCTATCACTTACCAAGT+TGG 0.569341 3:-93244012 None:intergenic
CATCGGTATAACGGAGCTTG+TGG 0.572339 3:-93245976 None:intergenic
TTGGAGCAGGAGCAGCTGAA+GGG 0.572486 3:+93245330 MsG0380017201.01.T01:CDS
GAAACCATACAAATATTGAA+AGG 0.576154 3:+93245929 MsG0380017201.01.T01:CDS
CCTGTATTCATCTAGTGTTG+TGG 0.576745 3:-93245834 None:intergenic
AGCTGAAGGGGCAATTGATG+CGG 0.578062 3:+93245343 MsG0380017201.01.T01:CDS
TCTTAAGTCCAACACGAGCT+CGG 0.580226 3:-93247164 None:intergenic
TCGGTATAACCAACATATCC+CGG 0.581823 3:-93247360 None:intergenic
GGATATGTTGGTTATACCGA+GGG 0.583016 3:+93247363 MsG0380017201.01.T01:CDS
TTTCTGGCCCTACTGGTGTG+GGG 0.583111 3:+93247217 MsG0380017201.01.T01:CDS
AGGGCCAGAAAAGATGAAGC+TGG 0.586569 3:-93247205 None:intergenic
GCATGTTTAACCCCGCGTAG+TGG 0.587552 3:+93246135 MsG0380017201.01.T01:CDS
TGGTGTGGGGAAGTCTGAGT+TGG 0.592757 3:+93247230 MsG0380017201.01.T01:CDS
GTTATTCGAATGGTTGGTGA+GGG 0.593949 3:+93244529 MsG0380017201.01.T01:CDS
TCAGACTTCCCCACACCAGT+AGG 0.594609 3:-93247225 None:intergenic
AGCAAGAGGACTTGAAAAGG+AGG 0.596313 3:+93246550 MsG0380017201.01.T01:CDS
TGAGGGTGCTGACAATGTTG+GGG 0.598035 3:+93244546 MsG0380017201.01.T01:CDS
AGTTGAAAAGATAATTGGAA+GGG 0.598116 3:+93243910 MsG0380017201.01.T01:CDS
AGATTGGTACTAATAAGCAA+GGG 0.601883 3:+93243673 MsG0380017201.01.T01:CDS
CAGTTACCTGAAGAAGCAAG+AGG 0.605964 3:+93246536 MsG0380017201.01.T01:intron
GTTGAAAAGATAATTGGAAG+GGG 0.606519 3:+93243911 MsG0380017201.01.T01:CDS
TTTGACCAAGCTAGCAGAGG+AGG 0.607369 3:+93244630 MsG0380017201.01.T01:CDS
CATGTTGAAGACATCAGGAT+GGG 0.610516 3:-93247454 None:intergenic
TAGAATGAAAGATCTTGTCT+GGG 0.611222 3:-93243638 None:intergenic
CAGACTTCCCCACACCAGTA+GGG 0.611504 3:-93247224 None:intergenic
AGGTCTCTTCCATCTTGAGA+AGG 0.614391 3:-93247083 None:intergenic
AGTTCGACTTCAACATGCAC+AGG 0.614688 3:+93246428 MsG0380017201.01.T01:CDS
TTGAAACCAGCTCTTGCTAG+AGG 0.615304 3:+93245374 MsG0380017201.01.T01:CDS
TCATGTTGAAGACATCAGGA+TGG 0.628699 3:-93247455 None:intergenic
GGTTATTCGAATGGTTGGTG+AGG 0.630747 3:+93244528 MsG0380017201.01.T01:intron
AGACCTAGGTCTTGATCTCG+CGG 0.633922 3:-93243523 None:intergenic
GGGATATGTTGGTTATACCG+AGG 0.637510 3:+93247362 MsG0380017201.01.T01:CDS
AAGTTGAAAAGATAATTGGA+AGG 0.639691 3:+93243909 MsG0380017201.01.T01:CDS
TCCAAAACTCTCTTGGCACG+CGG 0.640826 3:-93243968 None:intergenic
GATCCGCGAGATCAAGACCT+AGG 0.650976 3:+93243520 MsG0380017201.01.T01:CDS
CAACTGAGACTTTATCAACA+GGG 0.655191 3:-93247047 None:intergenic
CTTCAAATTCTGGAAGATGG+AGG 0.656698 3:+93247480 MsG0380017201.01.T01:CDS
TAACCTGAAAGACTCTCGCG+TGG 0.657562 3:+93243886 MsG0380017201.01.T01:CDS
ACATGAGCGAATTTATGGAA+CGG 0.659884 3:+93247307 MsG0380017201.01.T01:CDS
AGAGTACAACAGTATAGGGA+CGG 0.660046 3:-93247413 None:intergenic
TATGTTGGTTATACCGAGGG+TGG 0.666290 3:+93247366 MsG0380017201.01.T01:CDS
CAATTTGACCAAGCTAGCAG+AGG 0.667069 3:+93244627 MsG0380017201.01.T01:CDS
TAAGTCCAACACGAGCTCGG+CGG 0.668859 3:-93247161 None:intergenic
TGGTACTAATAAGCAAGGGG+TGG 0.671484 3:+93243677 MsG0380017201.01.T01:CDS
GATTGGTACTAATAAGCAAG+GGG 0.681583 3:+93243674 MsG0380017201.01.T01:CDS
AACAGGGATACCAGTCCAGG+CGG 0.697211 3:-93247031 None:intergenic
CGAGGGTGGTCAATTGACTG+AGG 0.703199 3:+93247380 MsG0380017201.01.T01:CDS
GTATAACCAACATATCCCGG+AGG 0.777636 3:-93247357 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTAAAAATTCTGAA+TGG + Chr3:93245688-93245707 MsG0380017201.01.T01:intron 10.0%
!! AATTGTTTACAAAATTTATT+TGG + Chr3:93246251-93246270 MsG0380017201.01.T01:intron 10.0%
!! ATATAATAAATATACGTAAA+CGG - Chr3:93244452-93244471 None:intergenic 10.0%
!!! ATTTTTTTTTTTAATAGTTC+TGG + Chr3:93246108-93246127 MsG0380017201.01.T01:intron 10.0%
!! AAAAAATGAAATGTTGAAAA+TGG - Chr3:93245653-93245672 None:intergenic 15.0%
!! AAAAATGAAATGTTGAAAAT+GGG - Chr3:93245652-93245671 None:intergenic 15.0%
!! ACATAATATTAAGCTAATTA+AGG + Chr3:93246711-93246730 MsG0380017201.01.T01:intron 15.0%
!!! AAATTTTGTAAACAATTCAA+AGG - Chr3:93246248-93246267 None:intergenic 15.0%
!! AAACCATACAAATATTGAAA+GGG + Chr3:93245930-93245949 MsG0380017201.01.T01:CDS 20.0%
!! ATATGAAAAACGACATATAA+AGG - Chr3:93244038-93244057 None:intergenic 20.0%
!! TCAAGCTAAATCTTAAATTA+TGG - Chr3:93246638-93246657 None:intergenic 20.0%
!! TTATTATTAAGATAAACAGC+AGG - Chr3:93246339-93246358 None:intergenic 20.0%
!!! AAAATAATCCTTGTCTTATT+GGG + Chr3:93244833-93244852 MsG0380017201.01.T01:intron 20.0%
!!! TAACATTAACCAACATTTTT+AGG + Chr3:93246658-93246677 MsG0380017201.01.T01:intron 20.0%
!!! TGGAATTTTAGCATATTTTA+TGG + Chr3:93245130-93245149 MsG0380017201.01.T01:intron 20.0%
!!! TTTGTTTACGTTTGAAATTT+TGG + Chr3:93244265-93244284 MsG0380017201.01.T01:intron 20.0%
! AAACACAACATTACAACAAA+GGG + Chr3:93245086-93245105 MsG0380017201.01.T01:intron 25.0%
! AACATAATTAAGATGAAAGC+AGG - Chr3:93244479-93244498 None:intergenic 25.0%
! AAGTTGAAAAGATAATTGGA+AGG + Chr3:93243909-93243928 MsG0380017201.01.T01:CDS 25.0%
! AGCACTTATACAAAAAAACA+AGG + Chr3:93246933-93246952 MsG0380017201.01.T01:CDS 25.0%
! AGCCAAAAAGTAAAAGAATT+TGG - Chr3:93246827-93246846 None:intergenic 25.0%
! AGTTGAAAAGATAATTGGAA+GGG + Chr3:93243910-93243929 MsG0380017201.01.T01:CDS 25.0%
! ATCAAGAATTTGAAAAGGTA+AGG + Chr3:93246612-93246631 MsG0380017201.01.T01:intron 25.0%
! ATGTAATCTCGTATGAAAAA+AGG - Chr3:93246695-93246714 None:intergenic 25.0%
! CAAAATAATCCTTGTCTTAT+TGG + Chr3:93244832-93244851 MsG0380017201.01.T01:intron 25.0%
! CTGGTATTGTATGTTTAAAT+GGG + Chr3:93246180-93246199 MsG0380017201.01.T01:intron 25.0%
! GAAACCATACAAATATTGAA+AGG + Chr3:93245929-93245948 MsG0380017201.01.T01:CDS 25.0%
! GTTAAGTATCCTAAAAATGT+TGG - Chr3:93246670-93246689 None:intergenic 25.0%
! TAAACACAACATTACAACAA+AGG + Chr3:93245085-93245104 MsG0380017201.01.T01:intron 25.0%
! TAAATACTTATGCAGTGTAT+AGG + Chr3:93245809-93245828 MsG0380017201.01.T01:intron 25.0%
! TCTGGTATTGTATGTTTAAA+TGG + Chr3:93246179-93246198 MsG0380017201.01.T01:intron 25.0%
! TTGAAACTTCAGCAAATATA+TGG - Chr3:93245543-93245562 None:intergenic 25.0%
! TTTCTAGGTCACAATTATAT+CGG + Chr3:93244302-93244321 MsG0380017201.01.T01:intron 25.0%
!! AAATAATCCTTGTCTTATTG+GGG + Chr3:93244834-93244853 MsG0380017201.01.T01:intron 25.0%
!! AAATTCCAAAAGATTGACTT+TGG - Chr3:93246216-93246235 None:intergenic 25.0%
!! CAATAAGACAAGGATTATTT+TGG - Chr3:93244834-93244853 None:intergenic 25.0%
!! GAAGTTTCAATAATTAGCTT+TGG + Chr3:93245553-93245572 MsG0380017201.01.T01:intron 25.0%
!! TCTAGTTTACAAATTGTTGT+TGG + Chr3:93244968-93244987 MsG0380017201.01.T01:intron 25.0%
!! TTTACAAATTGTTGTTGGTT+TGG + Chr3:93244973-93244992 MsG0380017201.01.T01:intron 25.0%
!! TTTCTGCTCTTTCTTTTATT+AGG + Chr3:93244223-93244242 MsG0380017201.01.T01:intron 25.0%
!!! ACTTTTTGGCTAATAATTAG+CGG + Chr3:93246836-93246855 MsG0380017201.01.T01:intron 25.0%
!!! CTCCAAATTCTTTTACTTTT+TGG + Chr3:93246822-93246841 MsG0380017201.01.T01:intron 25.0%
!!! CTGTTTTAAGTTCTTAGATA+TGG + Chr3:93245110-93245129 MsG0380017201.01.T01:intron 25.0%
!!! TGAAATTTTGGCTTACATTT+TGG + Chr3:93244277-93244296 MsG0380017201.01.T01:intron 25.0%
AAGCCCTTTCAATATTTGTA+TGG - Chr3:93245936-93245955 None:intergenic 30.0%
AATCTGTCACTAAGAAAACT+AGG - Chr3:93244667-93244686 None:intergenic 30.0%
AGACAAGATCTTTCATTCTA+AGG + Chr3:93243641-93243660 MsG0380017201.01.T01:CDS 30.0%
AGATTGGTACTAATAAGCAA+GGG + Chr3:93243673-93243692 MsG0380017201.01.T01:CDS 30.0%
AGCTGTCATATCAATATATC+AGG + Chr3:93246020-93246039 MsG0380017201.01.T01:CDS 30.0%
ATAGAATCCAAAGAGTTCAA+AGG - Chr3:93243611-93243630 None:intergenic 30.0%
ATCAAAATCCTAGGGAAAAT+TGG + Chr3:93244748-93244767 MsG0380017201.01.T01:intron 30.0%
GAGATTGAAAAAACTAATGG+AGG + Chr3:93245253-93245272 MsG0380017201.01.T01:intron 30.0%
GATCAATCAAAGCAATATCA+AGG - Chr3:93244130-93244149 None:intergenic 30.0%
GCACAGCTATATATATTCTT+CGG - Chr3:93245744-93245763 None:intergenic 30.0%
GGAGAGATTGAAAAAACTAA+TGG + Chr3:93245250-93245269 MsG0380017201.01.T01:intron 30.0%
GGATAAAGAAATGGATCTTA+AGG + Chr3:93246900-93246919 MsG0380017201.01.T01:CDS 30.0%
GTGGAAGTTGAAAAGATAAT+TGG + Chr3:93243905-93243924 MsG0380017201.01.T01:CDS 30.0%
GTTGAAAAGATAATTGGAAG+GGG + Chr3:93243911-93243930 MsG0380017201.01.T01:CDS 30.0%
TAATCTCGTATGAAAAAAGG+TGG - Chr3:93246692-93246711 None:intergenic 30.0%
TAATGTTGTGTTTAGTTGTG+TGG - Chr3:93245079-93245098 None:intergenic 30.0%
TACTTAAGAGATAGAAGTTG+TGG - Chr3:93245781-93245800 None:intergenic 30.0%
TAGAATGAAAGATCTTGTCT+GGG - Chr3:93243641-93243660 None:intergenic 30.0%
TATTGCTTTGATTGATCTGA+TGG + Chr3:93244133-93244152 MsG0380017201.01.T01:intron 30.0%
TCGCAATCAAGAATTTGAAA+AGG + Chr3:93246607-93246626 MsG0380017201.01.T01:CDS 30.0%
TGGTACCTTAATTTCTGAAT+AGG + Chr3:93246864-93246883 MsG0380017201.01.T01:intron 30.0%
TTAGAATGAAAGATCTTGTC+TGG - Chr3:93243642-93243661 None:intergenic 30.0%
TTATTAAGATAAACAGCAGG+TGG - Chr3:93246336-93246355 None:intergenic 30.0%
TTTGTTTGAAGACATTGTAG+TGG + Chr3:93246778-93246797 MsG0380017201.01.T01:intron 30.0%
! ATCAAAGAGTACAACAGTAT+AGG - Chr3:93247421-93247440 None:intergenic 30.0%
! GTTGAAAATGGGTTTAACTT+CGG - Chr3:93245641-93245660 None:intergenic 30.0%
! TCAAAGAGTACAACAGTATA+GGG - Chr3:93247420-93247439 None:intergenic 30.0%
! TCTTTCTTTTATTAGGAGTG+TGG + Chr3:93244230-93244249 MsG0380017201.01.T01:intron 30.0%
! TTTGACCAAAGTCAATCTTT+TGG + Chr3:93246208-93246227 MsG0380017201.01.T01:intron 30.0%
!! ATCAAATCTATAGCTTTGTC+AGG - Chr3:93246390-93246409 None:intergenic 30.0%
!! CCTCTAAAATCAAAATCCTA+GGG + Chr3:93244740-93244759 MsG0380017201.01.T01:intron 30.0%
!! GCAAATTTGTTGGTTCTTAT+TGG + Chr3:93243818-93243837 MsG0380017201.01.T01:CDS 30.0%
!! TCCTCTAAAATCAAAATCCT+AGG + Chr3:93244739-93244758 MsG0380017201.01.T01:intron 30.0%
!!! AGTATTTCACTTTTGACTTG+CGG + Chr3:93245509-93245528 MsG0380017201.01.T01:intron 30.0%
!!! CTTTTTGGCTAATAATTAGC+GGG + Chr3:93246837-93246856 MsG0380017201.01.T01:intron 30.0%
!!! GCTTACATTTTGGAATTTCT+AGG + Chr3:93244287-93244306 MsG0380017201.01.T01:intron 30.0%
AAAAAACAAGGAGATGAGCA+AGG + Chr3:93246945-93246964 MsG0380017201.01.T01:CDS 35.0%
AAAATTCTGAATGGTCGCTT+TGG + Chr3:93245697-93245716 MsG0380017201.01.T01:intron 35.0%
AAGCAATATCAAGGCATGTT+TGG - Chr3:93244121-93244140 None:intergenic 35.0%
ACATGAGCGAATTTATGGAA+CGG + Chr3:93247307-93247326 MsG0380017201.01.T01:CDS 35.0%
ACCAATAATGCGTTTGTGTA+AGG - Chr3:93247106-93247125 None:intergenic 35.0%
ACCTTAATTTCTGAATAGGC+TGG + Chr3:93246868-93246887 MsG0380017201.01.T01:intron 35.0%
ACCTTACACAAACGCATTAT+TGG + Chr3:93247102-93247121 MsG0380017201.01.T01:CDS 35.0%
ATAGATTTGATTGACGAAGC+TGG + Chr3:93246399-93246418 MsG0380017201.01.T01:CDS 35.0%
ATGAGAACATAATACTAGCC+TGG - Chr3:93244424-93244443 None:intergenic 35.0%
ATTACGTCCTTTGAACTCTT+TGG + Chr3:93243601-93243620 MsG0380017201.01.T01:intron 35.0%
CAACATGATGCTTCAAATTC+TGG + Chr3:93247470-93247489 MsG0380017201.01.T01:CDS 35.0%
CAACTGAGACTTTATCAACA+GGG - Chr3:93247050-93247069 None:intergenic 35.0%
CAGATTGGTACTAATAAGCA+AGG + Chr3:93243672-93243691 MsG0380017201.01.T01:CDS 35.0%
CATTGAAAAAGATCCAGCTT+TGG + Chr3:93245862-93245881 MsG0380017201.01.T01:CDS 35.0%
CGTCTATTGTTGAGCTAATT+GGG + Chr3:93246496-93246515 MsG0380017201.01.T01:intron 35.0%
CTAAATATCGTGGAGATTTG+AGG + Chr3:93245229-93245248 MsG0380017201.01.T01:intron 35.0%
GATTGGTACTAATAAGCAAG+GGG + Chr3:93243674-93243693 MsG0380017201.01.T01:CDS 35.0%
GCACGTGTTCTTGAAAATTT+GGG + Chr3:93244374-93244393 MsG0380017201.01.T01:intron 35.0%
GTGGAAAACAACAAGATACA+GGG - Chr3:93246317-93246336 None:intergenic 35.0%
GTGTGTGTAAGCTTCATAAA+GGG - Chr3:93245047-93245066 None:intergenic 35.0%
TAATAGCAAGATGCCAACTT+TGG + Chr3:93244591-93244610 MsG0380017201.01.T01:CDS 35.0%
TACCTAAATCATGCAGAATG+AGG - Chr3:93245176-93245195 None:intergenic 35.0%
TATGCTATCACTTACCAAGT+TGG - Chr3:93244015-93244034 None:intergenic 35.0%
TCAACTGAGACTTTATCAAC+AGG - Chr3:93247051-93247070 None:intergenic 35.0%
TCCAGCCTATTCAGAAATTA+AGG - Chr3:93246872-93246891 None:intergenic 35.0%
TCGTCTATTGTTGAGCTAAT+TGG + Chr3:93246495-93246514 MsG0380017201.01.T01:intron 35.0%
TGAGTAACACGTTCAATTTG+TGG - Chr3:93244794-93244813 None:intergenic 35.0%
TGTGTGTGTAAGCTTCATAA+AGG - Chr3:93245048-93245067 None:intergenic 35.0%
TTAGGTATAACCCTGGATAT+GGG + Chr3:93245189-93245208 MsG0380017201.01.T01:intron 35.0%
TTCAGATCCAAAGTAGTATG+AGG - Chr3:93247268-93247287 None:intergenic 35.0%
TTTAGGTATAACCCTGGATA+TGG + Chr3:93245188-93245207 MsG0380017201.01.T01:intron 35.0%
! AATCTTCTAGAAAGAGTCGA+CGG + Chr3:93245020-93245039 MsG0380017201.01.T01:intron 35.0%
! ACGCGACATTTTACATAGTA+CGG + Chr3:93245436-93245455 MsG0380017201.01.T01:intron 35.0%
! ATGCTTCAAATTCTGGAAGA+TGG + Chr3:93247477-93247496 MsG0380017201.01.T01:CDS 35.0%
! GAACGTGTTACTCAAATCTT+GGG + Chr3:93244800-93244819 MsG0380017201.01.T01:intron 35.0%
! TGAACGTGTTACTCAAATCT+TGG + Chr3:93244799-93244818 MsG0380017201.01.T01:intron 35.0%
! TGAGAACATAATACTAGCCT+GGG - Chr3:93244423-93244442 None:intergenic 35.0%
!! AAGCGATCAAAGTTTTATGC+TGG + Chr3:93243750-93243769 MsG0380017201.01.T01:intron 35.0%
!! AATTGTTGTTGGTTTGGTTC+AGG + Chr3:93244979-93244998 MsG0380017201.01.T01:intron 35.0%
!! AGAACTGTTGGTTCAGAAAA+TGG - Chr3:93246471-93246490 None:intergenic 35.0%
!! ATTGTTGTTGGTTTGGTTCA+GGG + Chr3:93244980-93244999 MsG0380017201.01.T01:intron 35.0%
!! CAAATTTTCAAGAACACGTG+CGG - Chr3:93244375-93244394 None:intergenic 35.0%
!! GCTAAGGTTCTAAAGTCTAT+GGG + Chr3:93243860-93243879 MsG0380017201.01.T01:CDS 35.0%
!! TGCTAAGGTTCTAAAGTCTA+TGG + Chr3:93243859-93243878 MsG0380017201.01.T01:CDS 35.0%
!! TTGTTGGTTCTTATTGGTGA+AGG + Chr3:93243824-93243843 MsG0380017201.01.T01:CDS 35.0%
!!! CCCTAGGATTTTGATTTTAG+AGG - Chr3:93244743-93244762 None:intergenic 35.0%
AACAAGTAGACCCATATCCA+GGG - Chr3:93245202-93245221 None:intergenic 40.0%
AAGATAATTGGAAGGGGTAG+TGG + Chr3:93243917-93243936 MsG0380017201.01.T01:CDS 40.0%
AGAAGCAAGAGGACTTGAAA+AGG + Chr3:93246547-93246566 MsG0380017201.01.T01:CDS 40.0%
AGAGCTACGGGATAAAGAAA+TGG + Chr3:93246891-93246910 MsG0380017201.01.T01:CDS 40.0%
AGAGTACAACAGTATAGGGA+CGG - Chr3:93247416-93247435 None:intergenic 40.0%
AGCATCATGTTGAAGACATC+AGG - Chr3:93247462-93247481 None:intergenic 40.0%
AGCCTCATTCTGCATGATTT+AGG + Chr3:93245171-93245190 MsG0380017201.01.T01:intron 40.0%
ATACTCATTCTGACAGACCT+AGG - Chr3:93243540-93243559 None:intergenic 40.0%
ATAGACGAGACAAGAACTGT+TGG - Chr3:93246483-93246502 None:intergenic 40.0%
ATCACCATTTGCAATCCGTT+GGG - Chr3:93244899-93244918 None:intergenic 40.0%
CATGTTGAAGACATCAGGAT+GGG - Chr3:93247457-93247476 None:intergenic 40.0%
CCACAACACTAGATGAATAC+AGG + Chr3:93245834-93245853 MsG0380017201.01.T01:CDS 40.0%
CCTGTATTCATCTAGTGTTG+TGG - Chr3:93245837-93245856 None:intergenic 40.0%
CGCACGTGTTCTTGAAAATT+TGG + Chr3:93244373-93244392 MsG0380017201.01.T01:intron 40.0%
GAAAAGATGAAGCTGGCAAT+CGG - Chr3:93247201-93247220 None:intergenic 40.0%
GAACAGGTTATTCGAATGGT+TGG + Chr3:93244523-93244542 MsG0380017201.01.T01:intron 40.0%
GATCTGAAGAAGCCATGATT+CGG + Chr3:93247280-93247299 MsG0380017201.01.T01:CDS 40.0%
GCATGATTTAGGTATAACCC+TGG + Chr3:93245182-93245201 MsG0380017201.01.T01:intron 40.0%
GCTTGACATGAGCGAATTTA+TGG + Chr3:93247302-93247321 MsG0380017201.01.T01:CDS 40.0%
GGAAAATTGGATCCTGTTGT+GGG + Chr3:93244761-93244780 MsG0380017201.01.T01:intron 40.0%
GGTGGAAAACAACAAGATAC+AGG - Chr3:93246318-93246337 None:intergenic 40.0%
GTTGCTGGAACTAAATATCG+TGG + Chr3:93245219-93245238 MsG0380017201.01.T01:intron 40.0%
TCATGTTGAAGACATCAGGA+TGG - Chr3:93247458-93247477 None:intergenic 40.0%
TCGGAACAGAGCAAATTTGT+TGG + Chr3:93243808-93243827 MsG0380017201.01.T01:intron 40.0%
TCGGTATAACCAACATATCC+CGG - Chr3:93247363-93247382 None:intergenic 40.0%
TGAAGTCGCTATAGAACTTC+AGG - Chr3:93246750-93246769 None:intergenic 40.0%
TGAGAGTTCCAAAACTCTCT+TGG - Chr3:93243978-93243997 None:intergenic 40.0%
TGCTTTCCTCTATGGTTTCA+GGG - Chr3:93244924-93244943 None:intergenic 40.0%
TGTATGGTTTCACTCACAGT+TGG - Chr3:93245920-93245939 None:intergenic 40.0%
TTGGACTTAAGAACCCTAAC+CGG + Chr3:93247175-93247194 MsG0380017201.01.T01:CDS 40.0%
! AACAGGATCCAATTTTCCCT+AGG - Chr3:93244759-93244778 None:intergenic 40.0%
! AAGGCTTGGTTATTGTTGTC+TGG + Chr3:93246161-93246180 MsG0380017201.01.T01:CDS 40.0%
! ACATTGGCCTCATACTACTT+TGG + Chr3:93247258-93247277 MsG0380017201.01.T01:CDS 40.0%
! ATTGCCAGCTTCATCTTTTC+TGG + Chr3:93247201-93247220 MsG0380017201.01.T01:CDS 40.0%
! CTTCAAATTCTGGAAGATGG+AGG + Chr3:93247480-93247499 MsG0380017201.01.T01:CDS 40.0%
! GGATATGTTGGTTATACCGA+GGG + Chr3:93247363-93247382 MsG0380017201.01.T01:CDS 40.0%
! GTAGTATGAGGCCAATGTTT+TGG - Chr3:93247256-93247275 None:intergenic 40.0%
!! AAAAAGATCCAGCTTTGGAG+AGG + Chr3:93245867-93245886 MsG0380017201.01.T01:CDS 40.0%
!! ACTTCGGTGACTTTGAGTTT+TGG - Chr3:93245625-93245644 None:intergenic 40.0%
!! CAAGAGCATCATCGGTATAA+CGG - Chr3:93245988-93246007 None:intergenic 40.0%
!! GTTATTCGAATGGTTGGTGA+GGG + Chr3:93244529-93244548 MsG0380017201.01.T01:CDS 40.0%
!!! AGTTTTATGCTGGCTCTAAG+AGG + Chr3:93243760-93243779 MsG0380017201.01.T01:intron 40.0%
!!! AGTTTTGGAACTCTCATTGG+AGG + Chr3:93243982-93244001 MsG0380017201.01.T01:CDS 40.0%
!!! GAGAGTTTTGGAACTCTCAT+TGG + Chr3:93243979-93243998 MsG0380017201.01.T01:CDS 40.0%
AACCATAGAGGAAAGCAGGT+TGG + Chr3:93244927-93244946 MsG0380017201.01.T01:intron 45.0%
AATTGGATCCTGTTGTGGGT+AGG + Chr3:93244765-93244784 MsG0380017201.01.T01:intron 45.0%
ACTGCTACAATGCGAATGTC+TGG + Chr3:93243569-93243588 MsG0380017201.01.T01:intron 45.0%
AGCAAGAGGACTTGAAAAGG+AGG + Chr3:93246550-93246569 MsG0380017201.01.T01:CDS 45.0%
AGGTCTCTTCCATCTTGAGA+AGG - Chr3:93247086-93247105 None:intergenic 45.0%
AGTTCGACTTCAACATGCAC+AGG + Chr3:93246428-93246447 MsG0380017201.01.T01:CDS 45.0%
ATCTGATCGCCTTCTCAAGA+TGG + Chr3:93247074-93247093 MsG0380017201.01.T01:CDS 45.0%
CAACAAGTAGACCCATATCC+AGG - Chr3:93245203-93245222 None:intergenic 45.0%
CAATTTGACCAAGCTAGCAG+AGG + Chr3:93244627-93244646 MsG0380017201.01.T01:CDS 45.0%
CACACAGTCTCCAAACTCAT+TGG + Chr3:93247330-93247349 MsG0380017201.01.T01:CDS 45.0%
CAGTTACCTGAAGAAGCAAG+AGG + Chr3:93246536-93246555 MsG0380017201.01.T01:intron 45.0%
CATCACCATTTGCAATCCGT+TGG - Chr3:93244900-93244919 None:intergenic 45.0%
CCATGTTTGAGCGTTTCACA+CGG + Chr3:93243724-93243743 MsG0380017201.01.T01:intron 45.0%
CTGAAACCATAGAGGAAAGC+AGG + Chr3:93244923-93244942 MsG0380017201.01.T01:intron 45.0%
CTGCTTTCCTCTATGGTTTC+AGG - Chr3:93244925-93244944 None:intergenic 45.0%
GAATAACCTGTTCCCTCAAG+TGG - Chr3:93244516-93244535 None:intergenic 45.0%
GAGGACTTGAAAAGGAGGTT+AGG + Chr3:93246555-93246574 MsG0380017201.01.T01:CDS 45.0%
GAGGGAACAGGTTATTCGAA+TGG + Chr3:93244519-93244538 MsG0380017201.01.T01:intron 45.0%
GATGAAGTGCACACTCTCAT+TGG + Chr3:93245311-93245330 MsG0380017201.01.T01:CDS 45.0%
GGAAAGACAGCTATTGCTGA+AGG + Chr3:93244868-93244887 MsG0380017201.01.T01:intron 45.0%
GGAGGTTAGGCAGATAGTTA+AGG + Chr3:93246568-93246587 MsG0380017201.01.T01:CDS 45.0%
GGGAAAATTGGATCCTGTTG+TGG + Chr3:93244760-93244779 MsG0380017201.01.T01:intron 45.0%
GTATAACCAACATATCCCGG+AGG - Chr3:93247360-93247379 None:intergenic 45.0%
GTCAATTGACTGAGGCAGTT+CGG + Chr3:93247388-93247407 MsG0380017201.01.T01:CDS 45.0%
GTGCATGTTGAAGTCGAACT+CGG - Chr3:93246428-93246447 None:intergenic 45.0%
GTTGTGTTTAGTTGTGTGGC+TGG - Chr3:93245075-93245094 None:intergenic 45.0%
TAATAAGCAAGGGGTGGTAG+AGG + Chr3:93243683-93243702 MsG0380017201.01.T01:CDS 45.0%
TACAACATATTGTTGCCGCC+TGG + Chr3:93247016-93247035 MsG0380017201.01.T01:CDS 45.0%
TAGCAAGATGCCAACTTTGG+AGG + Chr3:93244594-93244613 MsG0380017201.01.T01:CDS 45.0%
TCAAGTCCTCTTGCTTCTTC+AGG - Chr3:93246545-93246564 None:intergenic 45.0%
TCCAACTAATATTCGCACCC+AGG + Chr3:93244403-93244422 MsG0380017201.01.T01:intron 45.0%
TCTTAAGTCCAACACGAGCT+CGG - Chr3:93247167-93247186 None:intergenic 45.0%
TCTTGCTAGAGGTGAACTAC+AGG + Chr3:93245385-93245404 MsG0380017201.01.T01:CDS 45.0%
TGATGTCCCTGAAACCATAG+AGG + Chr3:93244915-93244934 MsG0380017201.01.T01:intron 45.0%
TGCATGTTGAAGTCGAACTC+GGG - Chr3:93246427-93246446 None:intergenic 45.0%
TGGTACTAATAAGCAAGGGG+TGG + Chr3:93243677-93243696 MsG0380017201.01.T01:CDS 45.0%
TTGAAACCAGCTCTTGCTAG+AGG + Chr3:93245374-93245393 MsG0380017201.01.T01:CDS 45.0%
! AAAGAGCAGAAAGCGCAGAA+AGG - Chr3:93244215-93244234 None:intergenic 45.0%
! ATGCCAACTTTGGAGGAGTA+TGG + Chr3:93244601-93244620 MsG0380017201.01.T01:CDS 45.0%
! ATGCGAATGTCTGGTTTCTC+TGG + Chr3:93243578-93243597 MsG0380017201.01.T01:intron 45.0%
! CTCTGCTAGCTTGGTCAAAT+TGG - Chr3:93244629-93244648 None:intergenic 45.0%
! GATATGGGTCTACTTGTTGC+TGG + Chr3:93245204-93245223 MsG0380017201.01.T01:intron 45.0%
! GGGATATGTTGGTTATACCG+AGG + Chr3:93247362-93247381 MsG0380017201.01.T01:CDS 45.0%
! GGTTATTCGAATGGTTGGTG+AGG + Chr3:93244528-93244547 MsG0380017201.01.T01:intron 45.0%
! GTCTGAGTTGGCCAAAACAT+TGG + Chr3:93247242-93247261 MsG0380017201.01.T01:CDS 45.0%
! GTTCTTATTGGTGAAGGCAC+TGG + Chr3:93243830-93243849 MsG0380017201.01.T01:CDS 45.0%
! TATGTTGGTTATACCGAGGG+TGG + Chr3:93247366-93247385 MsG0380017201.01.T01:CDS 45.0%
! TCTAAGGTGCTCACTCAGAT+TGG + Chr3:93243657-93243676 MsG0380017201.01.T01:CDS 45.0%
!! AAACTCATTGGTTCACCTCC+GGG + Chr3:93247342-93247361 MsG0380017201.01.T01:CDS 45.0%
!! AGCAGCTACAAGAGCATCAT+CGG - Chr3:93245996-93246015 None:intergenic 45.0%
!! ATTGGTGAAGGCACTGGTAT+TGG + Chr3:93243836-93243855 MsG0380017201.01.T01:CDS 45.0%
!! CAAACTCATTGGTTCACCTC+CGG + Chr3:93247341-93247360 MsG0380017201.01.T01:CDS 45.0%
!! CTTTTGGGTCTTCTTCGAGA+GGG + Chr3:93244338-93244357 MsG0380017201.01.T01:CDS 45.0%
!! GCTAATAATTAGCGGGCTGA+TGG + Chr3:93246844-93246863 MsG0380017201.01.T01:intron 45.0%
!! TTCATCTTTTCTGGCCCTAC+TGG + Chr3:93247210-93247229 MsG0380017201.01.T01:CDS 45.0%
AGACCTAGGTCTTGATCTCG+CGG - Chr3:93243526-93243545 None:intergenic 50.0%
AGCTGAAGGGGCAATTGATG+CGG + Chr3:93245343-93245362 MsG0380017201.01.T01:CDS 50.0%
AGGGCCAGAAAAGATGAAGC+TGG - Chr3:93247208-93247227 None:intergenic 50.0%
AGTTACCTCCTCTGCTAGCT+TGG - Chr3:93244638-93244657 None:intergenic 50.0%
AGTTCACCTCTAGCAAGAGC+TGG - Chr3:93245383-93245402 None:intergenic 50.0%
ATAGCTGTCTTTCCGACACC+AGG - Chr3:93244862-93244881 None:intergenic 50.0%
ATCAACAGGGATACCAGTCC+AGG - Chr3:93247037-93247056 None:intergenic 50.0%
CACCAACCTGCTTTCCTCTA+TGG - Chr3:93244932-93244951 None:intergenic 50.0%
CATGTTTAACCCCGCGTAGT+GGG + Chr3:93246136-93246155 MsG0380017201.01.T01:CDS 50.0%
CCAGGTTCCCCAATAAGACA+AGG - Chr3:93244844-93244863 None:intergenic 50.0%
CCGTGTGAAACGCTCAAACA+TGG - Chr3:93243727-93243746 None:intergenic 50.0%
CGGAGGTGAACCAATGAGTT+TGG - Chr3:93247343-93247362 None:intergenic 50.0%
CTCAGTCAATTGACCACCCT+CGG - Chr3:93247382-93247401 None:intergenic 50.0%
CTCGAAGAAGACCCAAAAGC+AGG - Chr3:93244337-93244356 None:intergenic 50.0%
CTGAATAGGCTGGAGAGCTA+CGG + Chr3:93246878-93246897 MsG0380017201.01.T01:intron 50.0%
CTTATTGGGGAACCTGGTGT+CGG + Chr3:93244847-93244866 MsG0380017201.01.T01:intron 50.0%
GACAATGTTGGGGCTACTGT+TGG + Chr3:93244556-93244575 MsG0380017201.01.T01:CDS 50.0%
GCCTGGGTGCGAATATTAGT+TGG - Chr3:93244407-93244426 None:intergenic 50.0%
GCTCATGTCAAGCCGAATCA+TGG - Chr3:93247295-93247314 None:intergenic 50.0%
GTGCCATACTCCTCCAAAGT+TGG - Chr3:93244607-93244626 None:intergenic 50.0%
TAACCTGAAAGACTCTCGCG+TGG + Chr3:93243886-93243905 MsG0380017201.01.T01:CDS 50.0%
TCCAAAACTCTCTTGGCACG+CGG - Chr3:93243971-93243990 None:intergenic 50.0%
TGAATAGGCTGGAGAGCTAC+GGG + Chr3:93246879-93246898 MsG0380017201.01.T01:intron 50.0%
TGGAATCTCCTCTCCAAAGC+TGG - Chr3:93245878-93245897 None:intergenic 50.0%
TGTGTTTGCGCTCCACTTGA+GGG + Chr3:93244501-93244520 MsG0380017201.01.T01:intron 50.0%
TTTGACCAAGCTAGCAGAGG+AGG + Chr3:93244630-93244649 MsG0380017201.01.T01:CDS 50.0%
! CATCGGTATAACGGAGCTTG+TGG - Chr3:93245979-93245998 None:intergenic 50.0%
! CCTTGTCTTATTGGGGAACC+TGG + Chr3:93244841-93244860 MsG0380017201.01.T01:intron 50.0%
! GTTTCACTCACAGTTGGCTC+TGG - Chr3:93245914-93245933 None:intergenic 50.0%
! TCTGAATGGTCGCTTTGGAC+TGG + Chr3:93245702-93245721 MsG0380017201.01.T01:intron 50.0%
!! AGGCACTGGTATTGGTGCTA+AGG + Chr3:93243844-93243863 MsG0380017201.01.T01:CDS 50.0%
!! GCTTTTGGGTCTTCTTCGAG+AGG + Chr3:93244337-93244356 MsG0380017201.01.T01:CDS 50.0%
!! GGATCTGAGCACCTGCTTTT+GGG + Chr3:93244323-93244342 MsG0380017201.01.T01:CDS 50.0%
!! GTGAGGGTGCTGACAATGTT+GGG + Chr3:93244545-93244564 MsG0380017201.01.T01:CDS 50.0%
!! GTTGGCTCTGGCACTTTAAC+TGG - Chr3:93245902-93245921 None:intergenic 50.0%
!! TGAGGGTGCTGACAATGTTG+GGG + Chr3:93244546-93244565 MsG0380017201.01.T01:CDS 50.0%
!! TTTTCTGGCCCTACTGGTGT+GGG + Chr3:93247216-93247235 MsG0380017201.01.T01:CDS 50.0%
AACAGGGATACCAGTCCAGG+CGG - Chr3:93247034-93247053 None:intergenic 55.0%
AGATGAAGCTGGCAATCGGC+CGG - Chr3:93247197-93247216 None:intergenic 55.0%
ATTGGAGCAGGAGCAGCTGA+AGG + Chr3:93245329-93245348 MsG0380017201.01.T01:CDS 55.0%
CAGACTTCCCCACACCAGTA+GGG - Chr3:93247227-93247246 None:intergenic 55.0%
CATATTGTTGCCGCCTGGAC+TGG + Chr3:93247021-93247040 MsG0380017201.01.T01:CDS 55.0%
CGAGGGTGGTCAATTGACTG+AGG + Chr3:93247380-93247399 MsG0380017201.01.T01:CDS 55.0%
CTCTTGGCACGCGGAGTAAA+CGG - Chr3:93243962-93243981 None:intergenic 55.0%
CTTCCACGCGAGAGTCTTTC+AGG - Chr3:93243892-93243911 None:intergenic 55.0%
GAGAGTGAGGCAGGAGATGT+AGG + Chr3:93246970-93246989 MsG0380017201.01.T01:CDS 55.0%
GATCCGCGAGATCAAGACCT+AGG + Chr3:93243520-93243539 MsG0380017201.01.T01:CDS 55.0%
GATGAGCAAGGCAGAGAGTG+AGG + Chr3:93246957-93246976 MsG0380017201.01.T01:CDS 55.0%
GCATGTTTAACCCCGCGTAG+TGG + Chr3:93246135-93246154 MsG0380017201.01.T01:CDS 55.0%
GCTCTGGCACTTTAACTGGC+TGG - Chr3:93245898-93245917 None:intergenic 55.0%
GGTCTTCTTCGAGAGGGTGA+GGG + Chr3:93244344-93244363 MsG0380017201.01.T01:CDS 55.0%
GGTTCACCTCCGGGATATGT+TGG + Chr3:93247351-93247370 MsG0380017201.01.T01:CDS 55.0%
GTGCACACTCTCATTGGAGC+AGG + Chr3:93245317-93245336 MsG0380017201.01.T01:CDS 55.0%
GTGTGTTTGCGCTCCACTTG+AGG + Chr3:93244500-93244519 MsG0380017201.01.T01:intron 55.0%
TAAGTCCAACACGAGCTCGG+CGG - Chr3:93247164-93247183 None:intergenic 55.0%
TCAGACTTCCCCACACCAGT+AGG - Chr3:93247228-93247247 None:intergenic 55.0%
TGGTGTGGGGAAGTCTGAGT+TGG + Chr3:93247230-93247249 MsG0380017201.01.T01:CDS 55.0%
TTGCTGAAGGTCTCGCCCAA+CGG + Chr3:93244881-93244900 MsG0380017201.01.T01:intron 55.0%
TTGGAGCAGGAGCAGCTGAA+GGG + Chr3:93245330-93245349 MsG0380017201.01.T01:CDS 55.0%
TTGGAGGAAGCTCGCCAACT+TGG + Chr3:93243998-93244017 MsG0380017201.01.T01:CDS 55.0%
! AAGCCTTTTCCCACTACGCG+GGG - Chr3:93246148-93246167 None:intergenic 55.0%
! AGCAGAAAGCGCAGAAAGGC+GGG - Chr3:93244211-93244230 None:intergenic 55.0%
! CAAGCCTTTTCCCACTACGC+GGG - Chr3:93246149-93246168 None:intergenic 55.0%
! CCAAGCCTTTTCCCACTACG+CGG - Chr3:93246150-93246169 None:intergenic 55.0%
! CGGATCTGAGCACCTGCTTT+TGG + Chr3:93244322-93244341 MsG0380017201.01.T01:CDS 55.0%
! GAGCAGAAAGCGCAGAAAGG+CGG - Chr3:93244212-93244231 None:intergenic 55.0%
! TAACCCCGCGTAGTGGGAAA+AGG + Chr3:93246142-93246161 MsG0380017201.01.T01:CDS 55.0%
! TCCGCGTGCCAAGAGAGTTT+TGG + Chr3:93243967-93243986 MsG0380017201.01.T01:CDS 55.0%
! TTTCTGGCCCTACTGGTGTG+GGG + Chr3:93247217-93247236 MsG0380017201.01.T01:CDS 55.0%
!! CTCGCCCAACGGATTGCAAA+TGG + Chr3:93244892-93244911 MsG0380017201.01.T01:intron 55.0%
!! CTTTTCTGGCCCTACTGGTG+TGG + Chr3:93247215-93247234 MsG0380017201.01.T01:CDS 55.0%
!! GCTGGCTCTAAGAGGAAGCT+AGG + Chr3:93243768-93243787 MsG0380017201.01.T01:intron 55.0%
!! GGCGGCTGGTCACATTTTGT+CGG + Chr3:93243789-93243808 MsG0380017201.01.T01:intron 55.0%
!! GGCTCTAAGAGGAAGCTAGG+CGG + Chr3:93243771-93243790 MsG0380017201.01.T01:intron 55.0%
!! GGTGAGGGTGCTGACAATGT+TGG + Chr3:93244544-93244563 MsG0380017201.01.T01:CDS 55.0%
AAGCTGGCAATCGGCCGGTT+AGG - Chr3:93247192-93247211 None:intergenic 60.0%
AGCAAGGCAGAGAGTGAGGC+AGG + Chr3:93246961-93246980 MsG0380017201.01.T01:CDS 60.0%
AGCTGGCAATCGGCCGGTTA+GGG - Chr3:93247191-93247210 None:intergenic 60.0%
CTAAGAGGAAGCTAGGCGGC+TGG + Chr3:93243775-93243794 MsG0380017201.01.T01:intron 60.0%
GGGTCTTCTTCGAGAGGGTG+AGG + Chr3:93244343-93244362 MsG0380017201.01.T01:CDS 60.0%
TCGGCGGATAGCACGGCTAA+TGG - Chr3:93247148-93247167 None:intergenic 60.0%
TCTTCGAGAGGGTGAGGGTG+TGG + Chr3:93244349-93244368 MsG0380017201.01.T01:intron 60.0%
TGCGCTCCACTTGAGGGAAC+AGG + Chr3:93244507-93244526 MsG0380017201.01.T01:intron 60.0%
TGGAGCAGGAGCAGCTGAAG+GGG + Chr3:93245331-93245350 MsG0380017201.01.T01:CDS 60.0%
TGTGGCTGCCTACCCACAAC+AGG - Chr3:93244776-93244795 None:intergenic 60.0%
! CCGCGTAGTGGGAAAAGGCT+TGG + Chr3:93246147-93246166 MsG0380017201.01.T01:CDS 60.0%
!! GTTGGGGCTACTGTTGGCTC+TGG + Chr3:93244562-93244581 MsG0380017201.01.T01:CDS 60.0%
CACGAGCTCGGCGGATAGCA+CGG - Chr3:93247155-93247174 None:intergenic 65.0%
GCTATCCGCCGAGCTCGTGT+TGG + Chr3:93247156-93247175 MsG0380017201.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 93243517 93247506 93243517 ID=MsG0380017201.01;Name=MsG0380017201.01
Chr3 mRNA 93243517 93247506 93243517 ID=MsG0380017201.01.T01;Parent=MsG0380017201.01;Name=MsG0380017201.01.T01;_AED=0.25;_eAED=0.27;_QI=0|0.45|0.5|1|0.90|0.83|12|0|566
Chr3 exon 93243517 93243541 93243517 ID=MsG0380017201.01.T01:exon:31061;Parent=MsG0380017201.01.T01
Chr3 exon 93243637 93243727 93243637 ID=MsG0380017201.01.T01:exon:31062;Parent=MsG0380017201.01.T01
Chr3 exon 93243817 93244019 93243817 ID=MsG0380017201.01.T01:exon:31063;Parent=MsG0380017201.01.T01
Chr3 exon 93244309 93244367 93244309 ID=MsG0380017201.01.T01:exon:31064;Parent=MsG0380017201.01.T01
Chr3 exon 93244529 93244651 93244529 ID=MsG0380017201.01.T01:exon:31065;Parent=MsG0380017201.01.T01
Chr3 exon 93245275 93245406 93245275 ID=MsG0380017201.01.T01:exon:31066;Parent=MsG0380017201.01.T01
Chr3 exon 93245824 93246041 93245824 ID=MsG0380017201.01.T01:exon:31067;Parent=MsG0380017201.01.T01
Chr3 exon 93246125 93246187 93246125 ID=MsG0380017201.01.T01:exon:31068;Parent=MsG0380017201.01.T01
Chr3 exon 93246374 93246449 93246374 ID=MsG0380017201.01.T01:exon:31069;Parent=MsG0380017201.01.T01
Chr3 exon 93246539 93246628 93246539 ID=MsG0380017201.01.T01:exon:31070;Parent=MsG0380017201.01.T01
Chr3 exon 93246886 93247506 93246886 ID=MsG0380017201.01.T01:exon:31071;Parent=MsG0380017201.01.T01
Chr3 CDS 93243517 93243541 93243517 ID=MsG0380017201.01.T01:cds;Parent=MsG0380017201.01.T01
Chr3 CDS 93243637 93243727 93243637 ID=MsG0380017201.01.T01:cds;Parent=MsG0380017201.01.T01
Chr3 CDS 93243817 93244019 93243817 ID=MsG0380017201.01.T01:cds;Parent=MsG0380017201.01.T01
Chr3 CDS 93244309 93244367 93244309 ID=MsG0380017201.01.T01:cds;Parent=MsG0380017201.01.T01
Chr3 CDS 93244529 93244651 93244529 ID=MsG0380017201.01.T01:cds;Parent=MsG0380017201.01.T01
Chr3 CDS 93245275 93245406 93245275 ID=MsG0380017201.01.T01:cds;Parent=MsG0380017201.01.T01
Chr3 CDS 93245824 93246041 93245824 ID=MsG0380017201.01.T01:cds;Parent=MsG0380017201.01.T01
Chr3 CDS 93246125 93246187 93246125 ID=MsG0380017201.01.T01:cds;Parent=MsG0380017201.01.T01
Chr3 CDS 93246374 93246449 93246374 ID=MsG0380017201.01.T01:cds;Parent=MsG0380017201.01.T01
Chr3 CDS 93246539 93246628 93246539 ID=MsG0380017201.01.T01:cds;Parent=MsG0380017201.01.T01
Chr3 CDS 93246886 93247506 93246886 ID=MsG0380017201.01.T01:cds;Parent=MsG0380017201.01.T01
Gene Sequence

>MsG0380017201.01.T01

ATGGATCCGCGAGATCAAGACCTAGACCCAGACAAGATCTTTCATTCTAAGGTGCTCACTCAGATTGGTACTAATAAGCAAGGGGTGGTAGAGGTAGCAGATTGTACTAGAGCCATAGCAAATTTGTTGGTTCTTATTGGTGAAGGCACTGGTATTGGTGCTAAGGTTCTAAAGTCTATGGGAATTAACCTGAAAGACTCTCGCGTGGAAGTTGAAAAGATAATTGGAAGGGGTAGTGGTTTTGTCGCTGTTGAGATTCCGTTTACTCCGCGTGCCAAGAGAGTTTTGGAACTCTCATTGGAGGAAGCTCGCCAACTTGGTCACAATTATATCGGATCTGAGCACCTGCTTTTGGGTCTTCTTCGAGAGGGTGAGGGTGTTATTCGAATGGTTGGTGAGGGTGCTGACAATGTTGGGGCTACTGTTGGCTCTGGAAGTAGTAATAGCAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACCAAGCTAGCAGAGGAGGAAATCAAGCAAAGTGATGAAATAATACTTTTCATAGATGAAGTGCACACTCTCATTGGAGCAGGAGCAGCTGAAGGGGCAATTGATGCGGCAAACATATTGAAACCAGCTCTTGCTAGAGGTGAACTACAGTGTATAGGAGCCACAACACTAGATGAATACAGGAAGCACATTGAAAAAGATCCAGCTTTGGAGAGGAGATTCCAGCCAGTTAAAGTGCCAGAGCCAACTGTGAGTGAAACCATACAAATATTGAAAGGGCTTAGAGAGCGCTATGAGATTCACCACAAGCTCCGTTATACCGATGATGCTCTTGTAGCTGCTGCAGAGCTGTCATATCAATATATCAGTTCTGGTATTGCATGTTTAACCCCGCGTAGTGGGAAAAGGCTTGGTTATTGTTGTCTGGTATTTGATCGATTTTTGCCTGACAAAGCTATAGATTTGATTGACGAAGCTGGTTCCCGAGTTCGACTTCAACATGCACAGTTACCTGAAGAAGCAAGAGGACTTGAAAAGGAGGTTAGGCAGATAGTTAAGGAGAAAGATGAAGCTGTTCGCAATCAAGAATTTGAAAAGGCTGGAGAGCTACGGGATAAAGAAATGGATCTTAAGGCTCAGATATCAGCACTTATACAAAAAAACAAGGAGATGAGCAAGGCAGAGAGTGAGGCAGGAGATGTAGGTGCACTTGTGACTGAAGTTGACATACAACATATTGTTGCCGCCTGGACTGGTATCCCTGTTGATAAAGTCTCAGTTGACGAATCTGATCGCCTTCTCAAGATGGAAGAGACCTTACACAAACGCATTATTGGTCAGCATGAAGCAGTAGAAGCCATTAGCCGTGCTATCCGCCGAGCTCGTGTTGGACTTAAGAACCCTAACCGGCCGATTGCCAGCTTCATCTTTTCTGGCCCTACTGGTGTGGGGAAGTCTGAGTTGGCCAAAACATTGGCCTCATACTACTTTGGATCTGAAGAAGCCATGATTCGGCTTGACATGAGCGAATTTATGGAACGGCACACAGTCTCCAAACTCATTGGTTCACCTCCGGGATATGTTGGTTATACCGAGGGTGGTCAATTGACTGAGGCAGTTCGGCGCCGTCCCTATACTGTTGTACTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTCTTCAACATGATGCTTCAAATTCTGGAAGATGGAGGCTAA

Protein sequence

>MsG0380017201.01.T01

MDPRDQDLDPDKIFHSKVLTQIGTNKQGVVEVADCTRAIANLLVLIGEGTGIGAKVLKSMGINLKDSRVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVIRMVGEGADNVGATVGSGSSNSKMPTLEEYGTNLTKLAEEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVSETIQILKGLRERYEIHHKLRYTDDALVAAAELSYQYISSGIACLTPRSGKRLGYCCLVFDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARGLEKEVRQIVKEKDEAVRNQEFEKAGELRDKEMDLKAQISALIQKNKEMSKAESEAGDVGALVTEVDIQHIVAAWTGIPVDKVSVDESDRLLKMEETLHKRIIGQHEAVEAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGG*