Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047357.01.T01 | PPD89029.1 | 65.672 | 201 | 41 | 6 | 5 | 187 | 680 | 870 | 1.31E-71 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047357.01.T01 | Q8L8A6 | 71.429 | 98 | 22 | 3 | 7 | 101 | 14 | 108 | 8.20E-42 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047357.01.T01 | A0A396IG50 | 99.010 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 1.46e-68 | 222 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0880047357.01.T01 | TF | GRF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048775.01 | MsG0880047357.01 | 0.818309 | 2.096266e-52 | 1.563565e-49 |
| MsG0180002218.01 | MsG0880047357.01 | 0.807514 | 4.869248e-50 | 2.717562e-47 |
| MsG0180002397.01 | MsG0880047357.01 | 0.803597 | 3.231676e-49 | 1.630691e-46 |
| MsG0180002583.01 | MsG0880047357.01 | 0.805078 | 1.587767e-49 | 8.322899e-47 |
| MsG0880045612.01 | MsG0880047357.01 | 0.811070 | 8.412134e-51 | 5.156972e-48 |
| MsG0880046904.01 | MsG0880047357.01 | 0.805162 | 1.524888e-49 | 8.010473e-47 |
| MsG0880047345.01 | MsG0880047357.01 | 0.907481 | 4.837572e-81 | 8.597498e-77 |
| MsG0880047357.01 | MsG0880047649.01 | 0.820675 | 6.051955e-53 | 4.819826e-50 |
| MsG0180003857.01 | MsG0880047357.01 | 0.809539 | 1.799790e-50 | 1.059570e-47 |
| MsG0180004538.01 | MsG0880047357.01 | 0.827335 | 1.655910e-54 | 1.594039e-51 |
| MsG0180004583.01 | MsG0880047357.01 | 0.802144 | 6.449416e-49 | 3.135629e-46 |
| MsG0780040641.01 | MsG0880047357.01 | 0.821152 | 4.700286e-53 | 3.793690e-50 |
| MsG0780041359.01 | MsG0880047357.01 | 0.825076 | 5.708435e-54 | 5.150116e-51 |
| MsG0380014666.01 | MsG0880047357.01 | 0.809224 | 2.102852e-50 | 1.227668e-47 |
| MsG0480020856.01 | MsG0880047357.01 | 0.808052 | 3.742372e-50 | 2.118133e-47 |
| MsG0480022784.01 | MsG0880047357.01 | 0.834346 | 3.160130e-56 | 3.740041e-53 |
| MsG0480023003.01 | MsG0880047357.01 | 0.844198 | 8.772246e-59 | 1.405674e-55 |
| MsG0480023706.01 | MsG0880047357.01 | 0.806453 | 8.166381e-50 | 4.434310e-47 |
| MsG0580024060.01 | MsG0880047357.01 | 0.822562 | 2.217244e-53 | 1.862530e-50 |
| MsG0580024742.01 | MsG0880047357.01 | 0.821645 | 3.616374e-53 | 2.959241e-50 |
| MsG0580024787.01 | MsG0880047357.01 | 0.808121 | 3.618939e-50 | 2.052029e-47 |
| MsG0580024964.01 | MsG0880047357.01 | 0.801400 | 9.167209e-49 | 4.373556e-46 |
| MsG0580025186.01 | MsG0880047357.01 | 0.859346 | 4.406411e-63 | 1.160208e-59 |
| MsG0580025775.01 | MsG0880047357.01 | 0.800050 | 1.728233e-48 | 7.968255e-46 |
| MsG0380015394.01 | MsG0880047357.01 | 0.810501 | 1.117319e-50 | 6.746127e-48 |
| MsG0380016092.01 | MsG0880047357.01 | 0.816568 | 5.171107e-52 | 3.677195e-49 |
| MsG0380017632.01 | MsG0880047357.01 | 0.804728 | 1.879177e-49 | 9.762533e-47 |
| MsG0580028923.01 | MsG0880047357.01 | 0.821838 | 3.264132e-53 | 2.685811e-50 |
| MsG0280006540.01 | MsG0880047357.01 | 0.800827 | 1.200641e-48 | 5.645811e-46 |
| MsG0780038736.01 | MsG0880047357.01 | 0.817557 | 3.099807e-52 | 2.264820e-49 |
| MsG0780039861.01 | MsG0880047357.01 | 0.801621 | 8.260122e-49 | 3.962839e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047357.01.T01 | MTR_4g125490 | 99.010 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 2.67e-71 | 222 |
| MsG0880047357.01.T01 | MTR_4g125490 | 97.727 | 88 | 2 | 0 | 98 | 185 | 217 | 304 | 8.90e-54 | 177 |
| MsG0880047357.01.T01 | MTR_2g041430 | 83.333 | 102 | 13 | 2 | 4 | 101 | 2 | 103 | 7.82e-57 | 182 |
| MsG0880047357.01.T01 | MTR_2g041430 | 58.140 | 86 | 27 | 4 | 98 | 176 | 219 | 302 | 6.03e-16 | 74.7 |
| MsG0880047357.01.T01 | MTR_2g041430 | 83.333 | 102 | 13 | 2 | 4 | 101 | 2 | 103 | 8.58e-57 | 182 |
| MsG0880047357.01.T01 | MTR_2g041430 | 58.140 | 86 | 27 | 4 | 98 | 176 | 219 | 302 | 6.43e-16 | 74.7 |
| MsG0880047357.01.T01 | MTR_2g041430 | 83.333 | 102 | 13 | 2 | 4 | 101 | 2 | 103 | 1.01e-56 | 182 |
| MsG0880047357.01.T01 | MTR_2g041430 | 58.140 | 86 | 27 | 4 | 98 | 176 | 219 | 302 | 7.09e-16 | 74.7 |
| MsG0880047357.01.T01 | MTR_8g020560 | 66.981 | 106 | 27 | 4 | 1 | 101 | 1 | 103 | 1.72e-41 | 143 |
| MsG0880047357.01.T01 | MTR_0001s0490 | 59.574 | 94 | 33 | 2 | 9 | 100 | 25 | 115 | 7.62e-32 | 117 |
| MsG0880047357.01.T01 | MTR_5g027030 | 58.696 | 92 | 26 | 2 | 9 | 100 | 16 | 95 | 2.86e-31 | 115 |
| MsG0880047357.01.T01 | MTR_1g017490 | 52.525 | 99 | 41 | 2 | 7 | 100 | 142 | 239 | 1.62e-29 | 114 |
| MsG0880047357.01.T01 | MTR_1g017490 | 52.525 | 99 | 41 | 2 | 7 | 100 | 9 | 106 | 2.02e-29 | 113 |
| MsG0880047357.01.T01 | MTR_7g104050 | 48.182 | 110 | 36 | 4 | 6 | 101 | 68 | 170 | 1.07e-23 | 96.7 |
| MsG0880047357.01.T01 | MTR_7g104050 | 48.624 | 109 | 35 | 4 | 6 | 100 | 68 | 169 | 1.10e-23 | 96.3 |
| MsG0880047357.01.T01 | MTR_3g092330 | 43.478 | 92 | 34 | 3 | 9 | 100 | 113 | 186 | 2.69e-16 | 76.3 |
| MsG0880047357.01.T01 | MTR_8g035910 | 37.895 | 95 | 45 | 3 | 6 | 100 | 46 | 126 | 3.67e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047357.01.T01 | AT3G13960 | 71.429 | 98 | 22 | 3 | 7 | 101 | 14 | 108 | 8.36e-43 | 147 |
| MsG0880047357.01.T01 | AT2G06200 | 42.929 | 198 | 86 | 4 | 7 | 184 | 4 | 194 | 7.34e-42 | 141 |
| MsG0880047357.01.T01 | AT2G06200 | 42.714 | 199 | 87 | 4 | 6 | 184 | 42 | 233 | 2.22e-41 | 141 |
| MsG0880047357.01.T01 | AT4G37740 | 55.914 | 93 | 37 | 2 | 9 | 100 | 164 | 253 | 1.09e-29 | 114 |
| MsG0880047357.01.T01 | AT2G22840 | 53.684 | 95 | 40 | 2 | 7 | 100 | 131 | 222 | 6.62e-25 | 100 |
| MsG0880047357.01.T01 | AT2G36400 | 53.608 | 97 | 36 | 3 | 10 | 100 | 77 | 170 | 6.90e-24 | 97.4 |
| MsG0880047357.01.T01 | AT3G52910 | 52.083 | 96 | 40 | 3 | 10 | 100 | 83 | 177 | 7.19e-22 | 91.7 |
| MsG0880047357.01.T01 | AT2G06200 | 40.310 | 129 | 59 | 3 | 67 | 184 | 1 | 122 | 1.76e-19 | 81.6 |
| MsG0880047357.01.T01 | AT5G53660 | 46.237 | 93 | 33 | 2 | 8 | 100 | 58 | 133 | 2.18e-18 | 81.6 |
| MsG0880047357.01.T01 | AT4G24150 | 38.462 | 104 | 58 | 2 | 2 | 100 | 104 | 206 | 3.17e-16 | 75.9 |
| MsG0880047357.01.T01 | AT4G24150 | 38.462 | 104 | 58 | 2 | 2 | 100 | 142 | 244 | 3.20e-16 | 76.3 |
Find 40 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGGAACAGGTATGTTTA+TGG | 0.231611 | 8:+85221621 | MsG0880047357.01.T01:intron |
| TGCCACTGAGTTGGAGTAAA+AGG | 0.276188 | 8:-85220548 | None:intergenic |
| CTTCTGCACCTCCCTGGCTC+TGG | 0.278943 | 8:-85220836 | None:intergenic |
| GCTTTCTTCACTGAACCTTC+TGG | 0.302685 | 8:+85221669 | MsG0880047357.01.T01:CDS |
| CTTTCACAGTACTTTGAATC+TGG | 0.319625 | 8:-85220899 | None:intergenic |
| AAAAGAGGAAGAGGAGCTTA+TGG | 0.356828 | 8:-85221751 | None:intergenic |
| CTTCTTCAATGGATGATTCA+TGG | 0.368355 | 8:+85221712 | MsG0880047357.01.T01:CDS |
| TTCTGCACCTCCCTGGCTCT+GGG | 0.368474 | 8:-85220835 | None:intergenic |
| ATCTACAAATACATGGCTTC+TGG | 0.368517 | 8:+85220593 | MsG0880047357.01.T01:CDS |
| GAACTATTTACCAATGGGAT+TGG | 0.400450 | 8:+85220799 | MsG0880047357.01.T01:CDS |
| TTTAAACAGAGAAATTGTTC+TGG | 0.401538 | 8:+85221771 | MsG0880047357.01.T01:CDS |
| AACTATTTACCAATGGGATT+GGG | 0.420553 | 8:+85220800 | MsG0880047357.01.T01:CDS |
| AAGTTTATCAGCTTCTTCAA+TGG | 0.445043 | 8:+85221701 | MsG0880047357.01.T01:CDS |
| TTGATAGTGAGTAGAAGATC+AGG | 0.446923 | 8:-85220629 | None:intergenic |
| TCTGTTCTTCTGCACCTCCC+TGG | 0.454328 | 8:-85220842 | None:intergenic |
| ACAATTTCTCTGTTTAAAAG+AGG | 0.457057 | 8:-85221766 | None:intergenic |
| GAGTAGAAGATCAGGAGGAA+TGG | 0.465599 | 8:-85220621 | None:intergenic |
| GTAAGAGTACTCATTGTCAT+TGG | 0.465700 | 8:-85221799 | None:intergenic |
| GGATGGAACTATTTACCAAT+GGG | 0.479254 | 8:+85220794 | MsG0880047357.01.T01:CDS |
| CAATGATGAATGGAAGAAAC+AGG | 0.479723 | 8:+85220522 | None:intergenic |
| GAAGAACAGATGGAAAGAAA+TGG | 0.480263 | 8:+85220855 | MsG0880047357.01.T01:CDS |
| GATCAAGGTTGTTACATCTC+AGG | 0.490399 | 8:+85221858 | MsG0880047357.01.T01:CDS |
| TCTCTGTTTAAAAGAGGAAG+AGG | 0.498513 | 8:-85221760 | None:intergenic |
| TAACAAACAACAATGATGAA+TGG | 0.501615 | 8:+85220512 | None:intergenic |
| GTGTGGTGCATGCAGTTGGA+TGG | 0.510680 | 8:+85220777 | MsG0880047357.01.T01:intron |
| TCAAGCTCTTGCCACTGAGT+TGG | 0.513392 | 8:-85220557 | None:intergenic |
| TTATGGACTGAAAGAGGAGG+TGG | 0.522907 | 8:+85221638 | MsG0880047357.01.T01:CDS |
| GAAGAGGAGCTTATGGTAAG+TGG | 0.526833 | 8:-85221744 | None:intergenic |
| AAACAACCACAGCAAGATCA+AGG | 0.541674 | 8:+85221843 | MsG0880047357.01.T01:CDS |
| GAACAGATGGAAAGAAATGG+AGG | 0.559737 | 8:+85220858 | MsG0880047357.01.T01:CDS |
| TGGATGGAACTATTTACCAA+TGG | 0.564553 | 8:+85220793 | MsG0880047357.01.T01:CDS |
| ATAGTGAGTAGAAGATCAGG+AGG | 0.571348 | 8:-85220626 | None:intergenic |
| GGGAGGTGCAGAAGAACAGA+TGG | 0.577454 | 8:+85220845 | MsG0880047357.01.T01:CDS |
| AAACTTCTTATAGTTCCAGA+AGG | 0.579842 | 8:-85221684 | None:intergenic |
| GTATGTTTATGGACTGAAAG+AGG | 0.601366 | 8:+85221632 | MsG0880047357.01.T01:CDS |
| AGCTCTTATCTACAAATACA+TGG | 0.606523 | 8:+85220586 | MsG0880047357.01.T01:CDS |
| TAACAACCTTGATCTTGCTG+TGG | 0.626299 | 8:-85221849 | None:intergenic |
| TGTTTATGGACTGAAAGAGG+AGG | 0.650765 | 8:+85221635 | MsG0880047357.01.T01:CDS |
| AAATAGACCCAGAGCCAGGG+AGG | 0.659120 | 8:+85220828 | MsG0880047357.01.T01:CDS |
| TTACAGTGTTGAGACTGATG+AGG | 0.793602 | 8:-85220683 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATAGTCATTCATATA+TGG | - | Chr8:85220724-85220743 | None:intergenic | 15.0% |
| !! | TAGAGAACTTATAAAATAAG+TGG | + | Chr8:85221430-85221449 | MsG0880047357.01.T01:intron | 20.0% |
| !!! | CTTATCGATTATAAACTTAT+AGG | - | Chr8:85221373-85221392 | None:intergenic | 20.0% |
| !!! | TTAAGTTGTTTATTCAAACA+TGG | - | Chr8:85221301-85221320 | None:intergenic | 20.0% |
| !!! | TTTATGAAAGATTCTCTTTT+TGG | + | Chr8:85221583-85221602 | MsG0880047357.01.T01:intron | 20.0% |
| ! | ACAATTTCTCTGTTTAAAAG+AGG | - | Chr8:85221769-85221788 | None:intergenic | 25.0% |
| ! | CTTTAAACCAACACATATTT+AGG | + | Chr8:85221275-85221294 | MsG0880047357.01.T01:intron | 25.0% |
| ! | TTTAAACAGAGAAATTGTTC+TGG | + | Chr8:85221771-85221790 | MsG0880047357.01.T01:CDS | 25.0% |
| AAACTTCTTATAGTTCCAGA+AGG | - | Chr8:85221687-85221706 | None:intergenic | 30.0% | |
| AACTATTTACCAATGGGATT+GGG | + | Chr8:85220800-85220819 | MsG0880047357.01.T01:CDS | 30.0% | |
| AAGTTTATCAGCTTCTTCAA+TGG | + | Chr8:85221701-85221720 | MsG0880047357.01.T01:CDS | 30.0% | |
| AGCTCTTATCTACAAATACA+TGG | + | Chr8:85220586-85220605 | MsG0880047357.01.T01:CDS | 30.0% | |
| TCAAATAGTCCAATCCAAAA+AGG | + | Chr8:85221522-85221541 | MsG0880047357.01.T01:intron | 30.0% | |
| TTGTCTTGAAATGAGAAGTT+AGG | - | Chr8:85221177-85221196 | None:intergenic | 30.0% | |
| ! | GGTATTGTTGTTATCTTTGA+AGG | + | Chr8:85221604-85221623 | MsG0880047357.01.T01:intron | 30.0% |
| ! | TATGTATGCACTTGTTGATT+TGG | + | Chr8:85220755-85220774 | MsG0880047357.01.T01:intron | 30.0% |
| AACATGGCCTAAATATGTGT+TGG | - | Chr8:85221285-85221304 | None:intergenic | 35.0% | |
| ACCAGTATTGTCAAGAAACA+AGG | - | Chr8:85221208-85221227 | None:intergenic | 35.0% | |
| ATCTACAAATACATGGCTTC+TGG | + | Chr8:85220593-85220612 | MsG0880047357.01.T01:CDS | 35.0% | |
| CAATCCAAAAAGGTTCATGA+TGG | + | Chr8:85221532-85221551 | MsG0880047357.01.T01:intron | 35.0% | |
| CCAGTATTGTCAAGAAACAA+GGG | - | Chr8:85221207-85221226 | None:intergenic | 35.0% | |
| CTTCTTCAATGGATGATTCA+TGG | + | Chr8:85221712-85221731 | MsG0880047357.01.T01:CDS | 35.0% | |
| CTTTCACAGTACTTTGAATC+TGG | - | Chr8:85220902-85220921 | None:intergenic | 35.0% | |
| GAACTATTTACCAATGGGAT+TGG | + | Chr8:85220799-85220818 | MsG0880047357.01.T01:CDS | 35.0% | |
| GAAGAACAGATGGAAAGAAA+TGG | + | Chr8:85220855-85220874 | MsG0880047357.01.T01:CDS | 35.0% | |
| GGATGGAACTATTTACCAAT+GGG | + | Chr8:85220794-85220813 | MsG0880047357.01.T01:CDS | 35.0% | |
| TCTCTGTTTAAAAGAGGAAG+AGG | - | Chr8:85221763-85221782 | None:intergenic | 35.0% | |
| TGAAGGAACAGGTATGTTTA+TGG | + | Chr8:85221621-85221640 | MsG0880047357.01.T01:intron | 35.0% | |
| TGGATGGAACTATTTACCAA+TGG | + | Chr8:85220793-85220812 | MsG0880047357.01.T01:CDS | 35.0% | |
| ! | AATAACACAACACTGATTGC+AGG | + | Chr8:85221240-85221259 | MsG0880047357.01.T01:intron | 35.0% |
| ! | ATTTTTCTTCCCAATCCCAT+TGG | - | Chr8:85220812-85220831 | None:intergenic | 35.0% |
| ! | CATCATGAACCTTTTTGGAT+TGG | - | Chr8:85221534-85221553 | None:intergenic | 35.0% |
| ! | GTATGTTTATGGACTGAAAG+AGG | + | Chr8:85221632-85221651 | MsG0880047357.01.T01:CDS | 35.0% |
| ! | GTTGTTATCTTTGAAGGAAC+AGG | + | Chr8:85221610-85221629 | MsG0880047357.01.T01:intron | 35.0% |
| !! | AAGCATAAGAAGAGTGTTGA+GGG | - | Chr8:85221104-85221123 | None:intergenic | 35.0% |
| !! | CAGATTCAAAGTACTGTGAA+AGG | + | Chr8:85220900-85220919 | MsG0880047357.01.T01:intron | 35.0% |
| !! | GTAAGAGTACTCATTGTCAT+TGG | - | Chr8:85221802-85221821 | None:intergenic | 35.0% |
| !! | GTTGTTTTCAAAACTTCCAC+AGG | - | Chr8:85220959-85220978 | None:intergenic | 35.0% |
| !! | TTGATAGTGAGTAGAAGATC+AGG | - | Chr8:85220632-85220651 | None:intergenic | 35.0% |
| AAAAGAGGAAGAGGAGCTTA+TGG | - | Chr8:85221754-85221773 | None:intergenic | 40.0% | |
| AAACAACCACAGCAAGATCA+AGG | + | Chr8:85221843-85221862 | MsG0880047357.01.T01:CDS | 40.0% | |
| AAATGAGAAGTTAGGCCTTG+AGG | - | Chr8:85221169-85221188 | None:intergenic | 40.0% | |
| AAGATTGTTGAAGTAGCAGC+AGG | - | Chr8:85220998-85221017 | None:intergenic | 40.0% | |
| AAGCTATCGTTGAGACTGAA+TGG | + | Chr8:85221403-85221422 | MsG0880047357.01.T01:intron | 40.0% | |
| ATAGTGAGTAGAAGATCAGG+AGG | - | Chr8:85220629-85220648 | None:intergenic | 40.0% | |
| GAACAGATGGAAAGAAATGG+AGG | + | Chr8:85220858-85220877 | MsG0880047357.01.T01:CDS | 40.0% | |
| GATCAAGGTTGTTACATCTC+AGG | + | Chr8:85221858-85221877 | MsG0880047357.01.T01:CDS | 40.0% | |
| TAACAACCTTGATCTTGCTG+TGG | - | Chr8:85221852-85221871 | None:intergenic | 40.0% | |
| ! | AGCACCATCATGAACCTTTT+TGG | - | Chr8:85221539-85221558 | None:intergenic | 40.0% |
| ! | ATCCTTTTACTCCAACTCAG+TGG | + | Chr8:85220546-85220565 | MsG0880047357.01.T01:CDS | 40.0% |
| ! | CAGTGTTGTGTTATTGTGAG+AGG | - | Chr8:85221235-85221254 | None:intergenic | 40.0% |
| ! | CCCTTGTTTCTTGACAATAC+TGG | + | Chr8:85221204-85221223 | MsG0880047357.01.T01:intron | 40.0% |
| ! | TGTTTATGGACTGAAAGAGG+AGG | + | Chr8:85221635-85221654 | MsG0880047357.01.T01:CDS | 40.0% |
| ! | TTACAGTGTTGAGACTGATG+AGG | - | Chr8:85220686-85220705 | None:intergenic | 40.0% |
| !! | AAGAAGAGTGTTGAGGGTAA+TGG | - | Chr8:85221098-85221117 | None:intergenic | 40.0% |
| !! | ATGCACTTGTTGATTTGGTG+TGG | + | Chr8:85220760-85220779 | MsG0880047357.01.T01:intron | 40.0% |
| !! | GAAGCATAAGAAGAGTGTTG+AGG | - | Chr8:85221105-85221124 | None:intergenic | 40.0% |
| AAACCGTTCAAGAAAGCCTG+TGG | + | Chr8:85220940-85220959 | MsG0880047357.01.T01:intron | 45.0% | |
| AGAAAAATAGACCCAGAGCC+AGG | + | Chr8:85220824-85220843 | MsG0880047357.01.T01:CDS | 45.0% | |
| AGAGGAAAGGGTGGTTAAGA+TGG | - | Chr8:85221131-85221150 | None:intergenic | 45.0% | |
| CTTCCACAGGCTTTCTTGAA+CGG | - | Chr8:85220946-85220965 | None:intergenic | 45.0% | |
| GAAAAATAGACCCAGAGCCA+GGG | + | Chr8:85220825-85220844 | MsG0880047357.01.T01:CDS | 45.0% | |
| GAAGAGGAGCTTATGGTAAG+TGG | - | Chr8:85221747-85221766 | None:intergenic | 45.0% | |
| GAGGAAAGGGTGGTTAAGAT+GGG | - | Chr8:85221130-85221149 | None:intergenic | 45.0% | |
| GAGGGTTATGGTAGAGGAAA+GGG | - | Chr8:85221143-85221162 | None:intergenic | 45.0% | |
| GAGTAGAAGATCAGGAGGAA+TGG | - | Chr8:85220624-85220643 | None:intergenic | 45.0% | |
| GCTTTCTTCACTGAACCTTC+TGG | + | Chr8:85221669-85221688 | MsG0880047357.01.T01:CDS | 45.0% | |
| ! | GTGAAAGGCACATGCATAGA+GGG | + | Chr8:85220915-85220934 | MsG0880047357.01.T01:intron | 45.0% |
| ! | TGCCACTGAGTTGGAGTAAA+AGG | - | Chr8:85220551-85220570 | None:intergenic | 45.0% |
| ! | TGTGAAAGGCACATGCATAG+AGG | + | Chr8:85220914-85220933 | MsG0880047357.01.T01:intron | 45.0% |
| ! | TTATGGACTGAAAGAGGAGG+TGG | + | Chr8:85221638-85221657 | MsG0880047357.01.T01:CDS | 45.0% |
| !!! | ATAAACATTTTAATAAAAAA+AGG | - | Chr8:85221568-85221587 | None:intergenic | 5.0% |
| AAGTTAGGCCTTGAGGATGG+AGG | - | Chr8:85221162-85221181 | None:intergenic | 50.0% | |
| ACCATAACCCTCCATCCTCA+AGG | + | Chr8:85221151-85221170 | MsG0880047357.01.T01:intron | 50.0% | |
| AGGATGGAGGGTTATGGTAG+AGG | - | Chr8:85221149-85221168 | None:intergenic | 50.0% | |
| AGTTAGGCCTTGAGGATGGA+GGG | - | Chr8:85221161-85221180 | None:intergenic | 50.0% | |
| GAGAAGTTAGGCCTTGAGGA+TGG | - | Chr8:85221165-85221184 | None:intergenic | 50.0% | |
| GGAGGGTTATGGTAGAGGAA+AGG | - | Chr8:85221144-85221163 | None:intergenic | 50.0% | |
| GGTTATGGTAGAGGAAAGGG+TGG | - | Chr8:85221140-85221159 | None:intergenic | 50.0% | |
| TCAAGCTCTTGCCACTGAGT+TGG | - | Chr8:85220560-85220579 | None:intergenic | 50.0% | |
| ! | TTTGGTGTGGTGCATGCAGT+TGG | + | Chr8:85220773-85220792 | MsG0880047357.01.T01:intron | 50.0% |
| AAATAGACCCAGAGCCAGGG+AGG | + | Chr8:85220828-85220847 | MsG0880047357.01.T01:CDS | 55.0% | |
| GCCTTGAGGATGGAGGGTTA+TGG | - | Chr8:85221155-85221174 | None:intergenic | 55.0% | |
| GTGTGGTGCATGCAGTTGGA+TGG | + | Chr8:85220777-85220796 | MsG0880047357.01.T01:intron | 55.0% | |
| TCTGTTCTTCTGCACCTCCC+TGG | - | Chr8:85220845-85220864 | None:intergenic | 55.0% | |
| ! | GGGAGGTGCAGAAGAACAGA+TGG | + | Chr8:85220845-85220864 | MsG0880047357.01.T01:CDS | 55.0% |
| ! | TTCTGCACCTCCCTGGCTCT+GGG | - | Chr8:85220838-85220857 | None:intergenic | 60.0% |
| CTTCTGCACCTCCCTGGCTC+TGG | - | Chr8:85220839-85220858 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 85220524 | 85221899 | 85220524 | ID=MsG0880047357.01;Name=MsG0880047357.01 |
| Chr8 | mRNA | 85220524 | 85221899 | 85220524 | ID=MsG0880047357.01.T01;Parent=MsG0880047357.01;Name=MsG0880047357.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|3|0|187 |
| Chr8 | exon | 85220524 | 85220701 | 85220524 | ID=MsG0880047357.01.T01:exon:34500;Parent=MsG0880047357.01.T01 |
| Chr8 | exon | 85220792 | 85220909 | 85220792 | ID=MsG0880047357.01.T01:exon:34501;Parent=MsG0880047357.01.T01 |
| Chr8 | exon | 85221632 | 85221899 | 85221632 | ID=MsG0880047357.01.T01:exon:34502;Parent=MsG0880047357.01.T01 |
| Chr8 | CDS | 85220524 | 85220701 | 85220524 | ID=MsG0880047357.01.T01:cds;Parent=MsG0880047357.01.T01 |
| Chr8 | CDS | 85220792 | 85220909 | 85220792 | ID=MsG0880047357.01.T01:cds;Parent=MsG0880047357.01.T01 |
| Chr8 | CDS | 85221632 | 85221899 | 85221632 | ID=MsG0880047357.01.T01:cds;Parent=MsG0880047357.01.T01 |
| Gene Sequence |
| Protein sequence |
