AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004538.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004538.01.T01 MTR_1g081970 94.419 663 31 2 1 657 1 663 0.0 1298
MsG0180004538.01.T01 MTR_1g060440 71.848 682 142 8 1 656 1 658 0.0 955
MsG0180004538.01.T01 MTR_7g114150 46.077 701 304 9 1 644 1 684 0.0 593
MsG0180004538.01.T01 MTR_7g114150 28.182 220 139 8 428 638 870 1079 7.71e-17 85.5
MsG0180004538.01.T01 MTR_1g051765 62.278 395 89 5 267 657 40 378 9.65e-165 477
MsG0180004538.01.T01 MTR_2g020420 40.462 692 334 22 1 640 1 666 5.55e-142 437
MsG0180004538.01.T01 MTR_2g020420 29.966 297 169 12 369 645 669 946 5.25e-28 120
MsG0180004538.01.T01 MTR_2g020420 39.942 686 333 19 1 640 1 653 1.25e-139 431
MsG0180004538.01.T01 MTR_2g020420 29.966 297 169 12 369 645 656 933 5.91e-28 120
MsG0180004538.01.T01 MTR_4g118660 38.164 697 336 15 1 643 42 697 3.06e-139 432
MsG0180004538.01.T01 MTR_4g118660 34.351 262 141 11 397 638 739 989 1.75e-31 131
MsG0180004538.01.T01 MTR_8g011080 35.267 655 313 16 1 643 54 609 1.99e-106 339
MsG0180004538.01.T01 MTR_1g081960 66.016 256 71 4 1 252 51 294 1.78e-102 315
MsG0180004538.01.T01 MTR_6g059870 30.846 697 419 19 1 646 1 685 3.60e-95 310
MsG0180004538.01.T01 MTR_3g099170 26.933 776 430 19 1 648 15 781 5.23e-78 265
MsG0180004538.01.T01 MTR_3g082810 33.457 269 169 5 386 644 407 675 7.08e-54 196
MsG0180004538.01.T01 MTR_3g082810 32.895 228 120 5 1 226 1 197 1.09e-27 119
MsG0180004538.01.T01 MTR_3g091040 36.296 270 162 5 383 643 422 690 9.92e-52 191
MsG0180004538.01.T01 MTR_3g091040 42.609 230 121 6 1 222 1 227 1.28e-47 179
MsG0180004538.01.T01 MTR_5g097170 34.335 233 146 4 416 642 450 681 4.02e-47 177
MsG0180004538.01.T01 MTR_5g097170 36.239 218 110 6 1 218 1 189 8.69e-30 125
MsG0180004538.01.T01 MTR_1g082220 84.848 66 10 0 1 66 1 66 1.41e-29 116
MsG0180004538.01.T01 MTR_1g082220 69.492 59 18 0 257 315 90 148 1.53e-19 87.4
MsG0180004538.01.T01 MTR_5g029070 27.974 311 198 10 348 642 271 571 3.31e-29 123
MsG0180004538.01.T01 MTR_5g029070 30.603 232 147 6 419 642 321 546 5.19e-29 122
MsG0180004538.01.T01 MTR_1g051815 69.014 71 21 1 317 387 23 92 6.93e-21 88.2
MsG0180004538.01.T01 MTR_3g100330 29.520 271 134 9 1 260 1 225 3.80e-20 90.1
MsG0180004538.01.T01 MTR_5g066100 28.395 243 162 5 1 240 2 235 1.55e-18 88.2
MsG0180004538.01.T01 MTR_2g436560 32.530 166 73 2 1 128 1 165 3.42e-14 75.1
MsG0180004538.01.T01 MTR_2g435450 42.697 89 45 2 47 129 13 101 4.09e-13 70.5
MsG0180004538.01.T01 MTR_4g120450 49.231 65 33 0 66 130 36 100 3.84e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004538.01.T01 AT5G18750 38.301 671 342 18 4 645 3 630 4.68e-116 368
MsG0180004538.01.T01 AT5G18750 35.772 246 132 9 409 641 649 881 6.68e-37 148
MsG0180004538.01.T01 AT5G27240 34.409 744 360 24 1 656 1 704 2.42e-112 363
MsG0180004538.01.T01 AT5G27240 32.558 215 118 12 410 615 878 1074 2.29e-16 84.0
MsG0180004538.01.T01 AT5G27240 34.409 744 360 24 1 656 1 704 2.42e-112 363
MsG0180004538.01.T01 AT5G27240 32.558 215 118 12 410 615 878 1074 2.29e-16 84.0
MsG0180004538.01.T01 AT5G27240 34.409 744 360 24 1 656 1 704 2.42e-112 363
MsG0180004538.01.T01 AT5G27240 32.558 215 118 12 410 615 878 1074 2.29e-16 84.0
MsG0180004538.01.T01 AT3G04980 32.938 759 366 22 1 651 1 724 1.30e-103 341
MsG0180004538.01.T01 AT3G04980 29.694 229 135 9 423 642 969 1180 1.25e-16 84.7
MsG0180004538.01.T01 AT3G04980 32.938 759 366 22 1 651 1 724 1.30e-103 341
MsG0180004538.01.T01 AT3G04980 29.694 229 135 9 423 642 969 1180 1.25e-16 84.7
MsG0180004538.01.T01 AT3G04980 32.254 741 359 22 19 651 1 706 1.39e-94 316
MsG0180004538.01.T01 AT3G04980 29.694 229 135 9 423 642 951 1162 1.26e-16 84.7
MsG0180004538.01.T01 AT5G18740 44.915 236 107 5 428 643 174 406 9.53e-62 212
MsG0180004538.01.T01 AT5G18730 44.628 242 110 6 423 643 39 277 1.18e-58 206
MsG0180004538.01.T01 AT5G18730 29.787 141 83 3 440 569 304 439 2.92e-12 70.1
MsG0180004538.01.T01 AT3G04960 42.222 225 105 10 423 638 276 484 1.59e-50 183
MsG0180004538.01.T01 AT3G04960 42.222 225 105 10 423 638 325 533 1.91e-50 184
MsG0180004538.01.T01 AT3G04960 42.222 225 105 10 423 638 328 536 6.96e-50 183
MsG0180004538.01.T01 AT3G04960 42.222 225 105 10 423 638 377 585 7.82e-50 184
MsG0180004538.01.T01 AT5G53150 37.218 266 153 7 380 638 413 671 2.01e-48 181
MsG0180004538.01.T01 AT5G53150 36.290 248 130 5 1 224 1 244 5.67e-42 162
MsG0180004538.01.T01 AT5G53150 37.218 266 153 7 380 638 413 671 2.01e-48 181
MsG0180004538.01.T01 AT5G53150 36.290 248 130 5 1 224 1 244 5.67e-42 162
MsG0180004538.01.T01 AT5G53150 37.218 266 153 7 380 638 442 700 2.20e-48 182
MsG0180004538.01.T01 AT5G53150 36.290 248 130 5 1 224 1 244 6.06e-42 163
MsG0180004538.01.T01 AT5G53150 37.218 266 153 7 380 638 442 700 2.20e-48 182
MsG0180004538.01.T01 AT5G53150 36.290 248 130 5 1 224 1 244 6.06e-42 163
MsG0180004538.01.T01 AT5G53150 37.218 266 153 7 380 638 442 700 2.20e-48 182
MsG0180004538.01.T01 AT5G53150 36.290 248 130 5 1 224 1 244 6.06e-42 163
MsG0180004538.01.T01 AT3G06340 40.984 244 117 4 1 226 1 235 1.19e-47 179
MsG0180004538.01.T01 AT3G06340 40.984 244 117 4 1 226 1 235 1.19e-47 179
MsG0180004538.01.T01 AT3G06340 40.984 244 117 4 1 226 1 235 1.19e-47 179
MsG0180004538.01.T01 AT3G06340 40.984 244 117 4 1 226 1 235 1.19e-47 179
MsG0180004538.01.T01 AT5G35753 34.211 228 143 4 421 642 196 422 1.44e-45 168
MsG0180004538.01.T01 AT2G05230 34.498 229 143 5 421 643 473 700 6.75e-44 168
MsG0180004538.01.T01 AT2G05230 32.937 252 156 5 1 251 1 240 2.11e-34 140
MsG0180004538.01.T01 AT2G05250 34.498 229 143 5 421 643 473 700 6.75e-44 168
MsG0180004538.01.T01 AT2G05250 32.937 252 156 5 1 251 1 240 2.11e-34 140
MsG0180004538.01.T01 AT3G05110 37.551 245 131 9 393 630 132 361 1.43e-43 161
MsG0180004538.01.T01 AT4G27980 37.004 227 127 7 418 638 313 529 3.22e-43 164
MsG0180004538.01.T01 AT4G27980 37.004 227 127 7 418 638 351 567 4.47e-43 164
MsG0180004538.01.T01 AT4G27980 37.004 227 127 7 418 638 350 566 4.50e-43 164
MsG0180004538.01.T01 AT5G53150 36.290 248 130 5 1 224 1 244 8.13e-43 162
MsG0180004538.01.T01 AT2G25560 35.593 236 135 3 1 222 1 233 4.21e-40 156
MsG0180004538.01.T01 AT2G25560 35.000 240 136 7 420 647 423 654 1.04e-39 155
MsG0180004538.01.T01 AT5G37380 33.333 276 125 4 1 218 1 275 6.68e-38 146
MsG0180004538.01.T01 AT5G37380 33.333 276 125 4 1 218 1 275 6.68e-38 146
MsG0180004538.01.T01 AT5G37380 33.333 276 125 4 1 218 1 275 6.68e-38 146
MsG0180004538.01.T01 AT5G37380 33.333 276 125 4 1 218 1 275 6.68e-38 146
MsG0180004538.01.T01 AT5G37380 33.333 276 125 4 1 218 1 275 6.68e-38 146
MsG0180004538.01.T01 AT5G37380 33.333 276 125 4 1 218 1 275 6.68e-38 146
MsG0180004538.01.T01 AT5G37380 33.333 276 125 4 1 218 1 275 6.68e-38 146
MsG0180004538.01.T01 AT5G37380 33.333 276 125 4 1 218 1 275 6.68e-38 146
MsG0180004538.01.T01 AT5G37380 33.333 276 125 4 1 218 1 275 6.68e-38 146
MsG0180004538.01.T01 AT4G19570 34.118 255 127 6 1 220 1 249 1.20e-32 133
MsG0180004538.01.T01 AT4G19590 46.212 132 71 0 1 132 1 132 5.03e-31 125
MsG0180004538.01.T01 AT5G37750 37.981 208 91 6 11 217 23 193 5.78e-31 121
MsG0180004538.01.T01 AT4G19590 46.212 132 71 0 1 132 1 132 6.27e-31 125
MsG0180004538.01.T01 AT4G19580 34.322 236 111 8 1 193 1 235 2.48e-28 116
MsG0180004538.01.T01 AT5G50115 32.328 232 123 6 423 650 269 470 7.66e-28 118
MsG0180004538.01.T01 AT5G37440 36.239 218 102 6 1 217 16 197 8.24e-28 114
MsG0180004538.01.T01 AT4G19590 45.378 119 65 0 14 132 3 121 2.34e-25 108
MsG0180004538.01.T01 AT2G35540 31.100 209 111 3 7 215 12 187 3.70e-22 101
MsG0180004538.01.T01 AT2G35540 29.362 235 140 12 425 644 366 589 6.51e-19 91.3
MsG0180004538.01.T01 AT2G01710 28.384 229 130 6 4 226 7 207 1.55e-16 81.6
MsG0180004538.01.T01 AT2G01710 28.384 229 130 6 4 226 51 251 3.47e-16 81.3
MsG0180004538.01.T01 AT5G64360 28.962 183 112 6 47 220 58 231 7.13e-16 81.3
MsG0180004538.01.T01 AT5G64360 28.962 183 112 6 47 220 58 231 7.13e-16 81.3
MsG0180004538.01.T01 AT5G64360 28.962 183 112 6 47 220 58 231 7.13e-16 81.3
MsG0180004538.01.T01 AT5G64360 28.962 183 112 6 47 220 58 231 7.13e-16 81.3
MsG0180004538.01.T01 AT5G64360 28.962 183 112 6 47 220 58 231 7.13e-16 81.3
MsG0180004538.01.T01 AT5G64360 28.962 183 112 6 47 220 58 231 7.13e-16 81.3
MsG0180004538.01.T01 AT5G64360 28.962 183 112 6 47 220 58 231 7.83e-16 80.9
MsG0180004538.01.T01 AT5G09540 25.909 220 138 4 2 218 8 205 1.68e-13 72.0
MsG0180004538.01.T01 AT3G06778 35.577 104 63 2 44 143 15 118 2.41e-12 67.4
MsG0180004538.01.T01 AT4G39960 45.349 86 47 0 63 148 81 166 2.89e-11 66.6
MsG0180004538.01.T01 AT4G39960 45.349 86 47 0 63 148 81 166 2.89e-11 66.6
MsG0180004538.01.T01 AT5G37760 31.788 151 73 2 13 163 79 199 3.06e-11 63.9

Find 145 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCTGTTGACTTTGGTTC+TGG 0.183753 1:-79359815 None:intergenic
TGCCCAAGTTTCTCCCTTCT+TGG 0.227348 1:-79360473 None:intergenic
CATCAGATTCAGTTTATAAA+AGG 0.229816 1:+79360421 MsG0180004538.01.T01:CDS
GCCTGCGTTGGAACCTTTAT+CGG 0.260641 1:-79359575 None:intergenic
TTCTCAAAATTATTGAAATC+TGG 0.288044 1:-79360151 None:intergenic
ACCTCATCCCATCCCTCTAA+TGG 0.305579 1:+79359299 MsG0180004538.01.T01:CDS
ATATATGTAGAACTGGAATT+TGG 0.311647 1:-79359453 None:intergenic
ATTAGCCTCTTTGAGAAAAC+TGG 0.314072 1:+79360637 MsG0180004538.01.T01:CDS
AAAGCAACACGTTTCATATA+AGG 0.319773 1:+79359934 MsG0180004538.01.T01:CDS
CTACATATATGTTATAAATA+AGG 0.331085 1:+79359466 MsG0180004538.01.T01:CDS
TGAACCTCGCCATCTTCATC+TGG 0.334839 1:-79360313 None:intergenic
CTTTCAAGCTGCAGATTACT+TGG 0.337948 1:+79360278 MsG0180004538.01.T01:CDS
AACCTGCACAGCCGACATTC+TGG 0.340367 1:+79359408 MsG0180004538.01.T01:CDS
TTCCCATCATTTGTACAGTT+TGG 0.341473 1:+79359548 MsG0180004538.01.T01:CDS
AACATCAGCATACAGCCTTT+TGG 0.350504 1:-79358976 None:intergenic
CAAGCTGTCTAAGTCTGATA+TGG 0.352317 1:+79359052 MsG0180004538.01.T01:CDS
GAAGCTGCTTTCAAGTTGAT+TGG 0.361899 1:+79359188 MsG0180004538.01.T01:CDS
TTTATCACTCAACACCCTAT+TGG 0.363699 1:-79359216 None:intergenic
TTGACAAGAGCATAAAATCT+TGG 0.369389 1:-79360241 None:intergenic
TCAGAAATTGGGATATCAAT+TGG 0.372459 1:+79360500 MsG0180004538.01.T01:CDS
TGCTGCAGGTTTCCCATTAG+AGG 0.373658 1:-79359312 None:intergenic
CAGCATCATGGTCATCTTCA+TGG 0.379538 1:-79359961 None:intergenic
AAGCTGCTTTCAAGTTGATT+GGG 0.381170 1:+79359189 MsG0180004538.01.T01:CDS
GCCCAAGTTTCTCCCTTCTT+GGG 0.382492 1:-79360472 None:intergenic
TTTCTTTATGATTGCTTCCT+CGG 0.386358 1:-79359108 None:intergenic
ACATAAAGATGAGAAGATTA+AGG 0.390025 1:+79359718 MsG0180004538.01.T01:CDS
AGTTGATTGGGGAAGCCAAT+AGG 0.396668 1:+79359201 MsG0180004538.01.T01:CDS
CTTCTGACATTCAATCTTGA+AGG 0.398614 1:-79359899 None:intergenic
ACAGTTTGGTGCCCCGATAA+AGG 0.399142 1:+79359562 MsG0180004538.01.T01:CDS
TGTATGAAAACATGTGCTAA+TGG 0.410801 1:+79359683 MsG0180004538.01.T01:CDS
AGTCCCACTCATCGTGTATG+AGG 0.416178 1:-79360713 None:intergenic
CCTGCGTTGGAACCTTTATC+GGG 0.418804 1:-79359574 None:intergenic
GTCCAGAATGTCGGCTGTGC+AGG 0.420134 1:-79359410 None:intergenic
ACAATGGTCTCTGGACTAGA+AGG 0.425187 1:-79360118 None:intergenic
ATGAAGATGGCGAGGTTCAT+TGG 0.425997 1:+79360317 MsG0180004538.01.T01:CDS
TTATAACATATATGTAGAAC+TGG 0.429465 1:-79359460 None:intergenic
CCTCAATCTTTGGAAGATCA+AGG 0.433329 1:+79360818 MsG0180004538.01.T01:CDS
CTAGAAGGCATATCTGAATC+TGG 0.435298 1:-79360103 None:intergenic
CCTCATCCCATCCCTCTAAT+GGG 0.437981 1:+79359300 MsG0180004538.01.T01:CDS
CAAGTAATCTGCAGCTTGAA+AGG 0.439819 1:-79360277 None:intergenic
GTTGATTGGGGAAGCCAATA+GGG 0.442301 1:+79359202 MsG0180004538.01.T01:CDS
TGCTTTGAATTCGATCCTGC+TGG 0.443106 1:+79360760 MsG0180004538.01.T01:CDS
ATCTCAGTTGGCAGGCCAGC+AGG 0.445109 1:-79360775 None:intergenic
TTGAATCTCTCTGTTGACTT+TGG 0.447760 1:-79359821 None:intergenic
GCACCAAACTGTACAAATGA+TGG 0.448703 1:-79359551 None:intergenic
AGATTGTGACTCCATTGGTT+TGG 0.455595 1:-79359759 None:intergenic
TCTGAAGATTCTCATGTTCA+AGG 0.457275 1:+79360049 MsG0180004538.01.T01:CDS
CCTTGATCTTCCAAAGATTG+AGG 0.460670 1:-79360818 None:intergenic
TTCAGATGGGGATTCAAAGA+AGG 0.462344 1:-79359386 None:intergenic
GGAAATGATTATGAAAAGAA+AGG 0.462654 1:+79359848 MsG0180004538.01.T01:CDS
AGCAGAAACTAAAATGCAAA+GGG 0.462702 1:+79358917 MsG0180004538.01.T01:CDS
CGCACTGAAGTTTGCTAACA+AGG 0.463840 1:+79358953 MsG0180004538.01.T01:CDS
TCAGGACAAACAATGGTCTC+TGG 0.469282 1:-79360127 None:intergenic
TGTTCAAGGTGATACGGTAT+TGG 0.472410 1:+79360063 MsG0180004538.01.T01:CDS
CTTACATTTCTGACAGAGTA+GGG 0.472701 1:-79359489 None:intergenic
CCCATTAGAGGGATGGGATG+AGG 0.475230 1:-79359300 None:intergenic
CTCCCTTCTTGGGAAACACT+AGG 0.478410 1:-79360462 None:intergenic
TCGAATTCAAAGCAACCTCT+TGG 0.481705 1:-79360751 None:intergenic
CAAGCTGCAGATTACTTGGT+TGG 0.486049 1:+79360282 MsG0180004538.01.T01:CDS
TACCTAGTGTTTCCCAAGAA+GGG 0.491503 1:+79360460 MsG0180004538.01.T01:CDS
TTCCCAAGAAGGGAGAAACT+TGG 0.491804 1:+79360470 MsG0180004538.01.T01:CDS
TTACCTAGTGTTTCCCAAGA+AGG 0.493728 1:+79360459 MsG0180004538.01.T01:CDS
GAAAATCTGTACAATTCATT+CGG 0.495540 1:-79360679 None:intergenic
GCGGTCTTTATACGACATAA+AGG 0.497302 1:+79359244 MsG0180004538.01.T01:CDS
GACATTCAATCTTGAAGGAT+CGG 0.499235 1:-79359894 None:intergenic
TTAGGAACTTGATTTGCTGC+AGG 0.499707 1:-79359326 None:intergenic
AAATTATTGAAATCTGGATC+AGG 0.500522 1:-79360145 None:intergenic
TTGAACTTACCACAAGCAAT+GGG 0.504197 1:-79360355 None:intergenic
TCACAATCTTCAAACAATGT+TGG 0.509713 1:+79359773 MsG0180004538.01.T01:CDS
TCGTGTATGAGGGAATTTGA+TGG 0.512140 1:-79360702 None:intergenic
TAGATGCTGCAGCTCTAACA+TGG 0.513583 1:-79359274 None:intergenic
CGGCTGTGCAGGTTTCAGAT+GGG 0.513871 1:-79359399 None:intergenic
ACACGATGAGTGGGACTGAA+AGG 0.514823 1:+79360719 MsG0180004538.01.T01:CDS
CAGGTTTCCCATTAGAGGGA+TGG 0.518826 1:-79359307 None:intergenic
AGGTTTCCCATTAGAGGGAT+GGG 0.522178 1:-79359306 None:intergenic
TCAGCTTCAAATATCTCAGT+TGG 0.522384 1:-79360787 None:intergenic
GGTGGAACACCCGTTGGTAG+TGG 0.522855 1:+79359626 MsG0180004538.01.T01:CDS
TCGGCTGTGCAGGTTTCAGA+TGG 0.522941 1:-79359400 None:intergenic
GACTCCATTGGTTTGGACAC+AGG 0.525130 1:-79359752 None:intergenic
AAGTAATCTGCAGCTTGAAA+GGG 0.526697 1:-79360276 None:intergenic
TTTGAACTTACCACAAGCAA+TGG 0.531911 1:-79360356 None:intergenic
TCCCAAGAAGGGAGAAACTT+GGG 0.535506 1:+79360471 MsG0180004538.01.T01:CDS
TCATCCTTGTTACACTCCAT+TGG 0.537571 1:-79358873 None:intergenic
TTCTCATGTTCAAGGTGATA+CGG 0.537680 1:+79360057 MsG0180004538.01.T01:CDS
TTTGAAGATTGTGACTCCAT+TGG 0.538128 1:-79359764 None:intergenic
TTCGATGATTCATCTTGTCG+TGG 0.538609 1:-79359998 None:intergenic
TCTTACATTTCTGACAGAGT+AGG 0.540313 1:-79359490 None:intergenic
TCTGCACATCCACTACCAAC+GGG 0.540348 1:-79359635 None:intergenic
CGACATTCTGGACAATGTGC+AGG 0.540691 1:+79359420 MsG0180004538.01.T01:CDS
AAGTCTGATATGGACTGGTA+TGG 0.542314 1:+79359062 MsG0180004538.01.T01:CDS
CTCAATCTTTGGAAGATCAA+GGG 0.542730 1:+79360819 MsG0180004538.01.T01:CDS
AGTTTGCTAACAAGGCCAAA+AGG 0.546529 1:+79358961 MsG0180004538.01.T01:CDS
GTCTGCACATCCACTACCAA+CGG 0.548463 1:-79359636 None:intergenic
TATTCCTGTGTCCAAACCAA+TGG 0.549550 1:+79359748 MsG0180004538.01.T01:CDS
GCTGCAGGTTTCCCATTAGA+GGG 0.550927 1:-79359311 None:intergenic
CGTGTATGAGGGAATTTGAT+GGG 0.552326 1:-79360701 None:intergenic
CACGATGAGTGGGACTGAAA+GGG 0.552864 1:+79360720 MsG0180004538.01.T01:CDS
TAGCAGAAACTAAAATGCAA+AGG 0.560764 1:+79358916 MsG0180004538.01.T01:CDS
GGCATTCATGTTGCTTACCT+AGG 0.562653 1:+79360598 MsG0180004538.01.T01:CDS
AAAACATGTGCTAATGGAGT+TGG 0.565348 1:+79359689 MsG0180004538.01.T01:CDS
TCAGATCCTTGCTGTTTGTG+AGG 0.565840 1:+79359010 MsG0180004538.01.T01:CDS
CTTCAAATATCTCAGTTGGC+AGG 0.565950 1:-79360783 None:intergenic
GAAGCTGACCCAGATGAAGA+TGG 0.566585 1:+79360304 MsG0180004538.01.T01:CDS
TCAGATGGGGATTCAAAGAA+GGG 0.566815 1:-79359385 None:intergenic
GGCTGTGCAGGTTTCAGATG+GGG 0.569621 1:-79359398 None:intergenic
AATCTGTACAATTCATTCGG+TGG 0.569911 1:-79360676 None:intergenic
CCCGATAAAGGTTCCAACGC+AGG 0.570754 1:+79359574 MsG0180004538.01.T01:CDS
GCTTACCTAGGAAAAGTGAA+GGG 0.572444 1:+79360610 MsG0180004538.01.T01:CDS
TGTCTAAGTCTGATATGGAC+TGG 0.572481 1:+79359057 MsG0180004538.01.T01:CDS
GAACCTCGCCATCTTCATCT+GGG 0.573701 1:-79360312 None:intergenic
CCAGCCTCTAAAAGTAATGG+TGG 0.579951 1:+79359608 MsG0180004538.01.T01:CDS
TTCATACATGAAGGATATGA+CGG 0.584565 1:-79359668 None:intergenic
AAATCTTGGCATAGCATCAG+TGG 0.589734 1:-79360227 None:intergenic
AGGTGATACGGTATTGGAGT+CGG 0.590303 1:+79360069 MsG0180004538.01.T01:CDS
TGCTTACCTAGGAAAAGTGA+AGG 0.591773 1:+79360609 MsG0180004538.01.T01:CDS
AAACCAGCCTCTAAAAGTAA+TGG 0.592131 1:+79359605 MsG0180004538.01.T01:CDS
CACCAAACTGTACAAATGAT+GGG 0.592480 1:-79359550 None:intergenic
TTCCCTCATACACGATGAGT+GGG 0.593860 1:+79360710 MsG0180004538.01.T01:CDS
ATCTGGATCAGGACAAACAA+TGG 0.594934 1:-79360134 None:intergenic
AGCTGCTTTCAAGTTGATTG+GGG 0.595219 1:+79359190 MsG0180004538.01.T01:CDS
CTCACCAATGGAGTGTAACA+AGG 0.597020 1:+79358869 None:intergenic
GTCCCACTCATCGTGTATGA+GGG 0.598307 1:-79360712 None:intergenic
AAAGATGAGAAGATTAAGGA+TGG 0.602254 1:+79359722 MsG0180004538.01.T01:CDS
AGATGCTGCAGCTCTAACAT+GGG 0.602611 1:-79359273 None:intergenic
CTTCAAGATTGAATGTCAGA+AGG 0.611129 1:+79359900 MsG0180004538.01.T01:CDS
TAACAAGGATGACGCTGTGA+AGG 0.611288 1:+79358884 MsG0180004538.01.T01:CDS
TCTTTGGAAGATCAAGGGAG+AGG 0.616491 1:+79360824 MsG0180004538.01.T01:CDS
ATTCCCTCATACACGATGAG+TGG 0.619375 1:+79360709 MsG0180004538.01.T01:CDS
CTTACCTAGGAAAAGTGAAG+GGG 0.630005 1:+79360611 MsG0180004538.01.T01:CDS
GAAGGCATATCTGAATCTGG+TGG 0.636305 1:-79360100 None:intergenic
GCAGATTTGCCCATTGCTTG+TGG 0.637267 1:+79360346 MsG0180004538.01.T01:CDS
ACAAATGATGGGAAAGTCTG+TGG 0.637568 1:-79359539 None:intergenic
CTGCACATTGTCCAGAATGT+CGG 0.643864 1:-79359419 None:intergenic
AGTAATGGTGGAACACCCGT+TGG 0.646014 1:+79359620 MsG0180004538.01.T01:CDS
TCTCAGAAAACTACAGATCG+TGG 0.646401 1:+79360388 MsG0180004538.01.T01:CDS
CAGATGGGGATTCAAAGAAG+GGG 0.650743 1:-79359384 None:intergenic
TGACCCAGATGAAGATGGCG+AGG 0.654361 1:+79360309 MsG0180004538.01.T01:CDS
ATGAGTGGGACTGAAAGGGA+AGG 0.678614 1:+79360724 MsG0180004538.01.T01:CDS
TCAACAGAGAGATTCAACAC+TGG 0.681122 1:+79359827 MsG0180004538.01.T01:CDS
CTGCGTTGGAACCTTTATCG+GGG 0.681163 1:-79359573 None:intergenic
TGTGAACCTCACAAACAGCA+AGG 0.689042 1:-79359016 None:intergenic
GAAAGGGAAGGTGTTCCAAG+AGG 0.691373 1:+79360736 MsG0180004538.01.T01:CDS
AATCTGCAGCTTGAAAGGGA+AGG 0.703720 1:-79360272 None:intergenic
GCAGAAACTAAAATGCAAAG+GGG 0.741214 1:+79358918 MsG0180004538.01.T01:CDS
TGTTGAGTGATAAAGCAACG+CGG 0.847765 1:+79359225 MsG0180004538.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTACATATATGTTATAAATA+AGG + Chr1:79359466-79359485 MsG0180004538.01.T01:CDS 15.0%
!! TTATAACATATATGTAGAAC+TGG - Chr1:79359463-79359482 None:intergenic 20.0%
!! TTCTCAAAATTATTGAAATC+TGG - Chr1:79360154-79360173 None:intergenic 20.0%
!!! AGATTTCAATAATTTTGAGA+AGG + Chr1:79360153-79360172 MsG0180004538.01.T01:CDS 20.0%
!!! TTTTGCTGTAAATCAATTAT+GGG + Chr1:79360192-79360211 MsG0180004538.01.T01:CDS 20.0%
! AAATTATTGAAATCTGGATC+AGG - Chr1:79360148-79360167 None:intergenic 25.0%
! ACATAAAGATGAGAAGATTA+AGG + Chr1:79359718-79359737 MsG0180004538.01.T01:CDS 25.0%
! ATATATGTAGAACTGGAATT+TGG - Chr1:79359456-79359475 None:intergenic 25.0%
! CATCAGATTCAGTTTATAAA+AGG + Chr1:79360421-79360440 MsG0180004538.01.T01:CDS 25.0%
! GAAAATCTGTACAATTCATT+CGG - Chr1:79360682-79360701 None:intergenic 25.0%
! GGAAATGATTATGAAAAGAA+AGG + Chr1:79359848-79359867 MsG0180004538.01.T01:CDS 25.0%
!!! GTTTTGCTGTAAATCAATTA+TGG + Chr1:79360191-79360210 MsG0180004538.01.T01:CDS 25.0%
AAAGATGAGAAGATTAAGGA+TGG + Chr1:79359722-79359741 MsG0180004538.01.T01:CDS 30.0%
AAAGCAACACGTTTCATATA+AGG + Chr1:79359934-79359953 MsG0180004538.01.T01:CDS 30.0%
AGCAGAAACTAAAATGCAAA+GGG + Chr1:79358917-79358936 MsG0180004538.01.T01:CDS 30.0%
CCTGATAAAAATAAATCTGC+TGG + Chr1:79359161-79359180 MsG0180004538.01.T01:CDS 30.0%
GAAAAAGATTCCTCAATCTT+TGG + Chr1:79360808-79360827 MsG0180004538.01.T01:CDS 30.0%
TAGCAGAAACTAAAATGCAA+AGG + Chr1:79358916-79358935 MsG0180004538.01.T01:CDS 30.0%
TCACAATCTTCAAACAATGT+TGG + Chr1:79359773-79359792 MsG0180004538.01.T01:CDS 30.0%
TCAGAAATTGGGATATCAAT+TGG + Chr1:79360500-79360519 MsG0180004538.01.T01:CDS 30.0%
TGTATGAAAACATGTGCTAA+TGG + Chr1:79359683-79359702 MsG0180004538.01.T01:CDS 30.0%
TTCATACATGAAGGATATGA+CGG - Chr1:79359671-79359690 None:intergenic 30.0%
TTTCTTTATGATTGCTTCCT+CGG - Chr1:79359111-79359130 None:intergenic 30.0%
! TTGACAAGAGCATAAAATCT+TGG - Chr1:79360244-79360263 None:intergenic 30.0%
! TTGGGCAATTTTCAGAAATT+GGG + Chr1:79360489-79360508 MsG0180004538.01.T01:CDS 30.0%
!! CAATAATTTTGAGAAGGACA+AGG + Chr1:79360159-79360178 MsG0180004538.01.T01:CDS 30.0%
!! TTCTGATGTTTTGTTGCATT+AGG - Chr1:79359347-79359366 None:intergenic 30.0%
!!! CCAGCAGATTTATTTTTATC+AGG - Chr1:79359164-79359183 None:intergenic 30.0%
AAAACATGTGCTAATGGAGT+TGG + Chr1:79359689-79359708 MsG0180004538.01.T01:CDS 35.0%
AAGTAATCTGCAGCTTGAAA+GGG - Chr1:79360279-79360298 None:intergenic 35.0%
AATCTGTACAATTCATTCGG+TGG - Chr1:79360679-79360698 None:intergenic 35.0%
CACCAAACTGTACAAATGAT+GGG - Chr1:79359553-79359572 None:intergenic 35.0%
CTTACATTTCTGACAGAGTA+GGG - Chr1:79359492-79359511 None:intergenic 35.0%
CTTCAAGATTGAATGTCAGA+AGG + Chr1:79359900-79359919 MsG0180004538.01.T01:CDS 35.0%
CTTCTGACATTCAATCTTGA+AGG - Chr1:79359902-79359921 None:intergenic 35.0%
GACATTCAATCTTGAAGGAT+CGG - Chr1:79359897-79359916 None:intergenic 35.0%
GCAGAAACTAAAATGCAAAG+GGG + Chr1:79358918-79358937 MsG0180004538.01.T01:CDS 35.0%
TCAGACTGAAAAATTATCCG+AGG + Chr1:79359091-79359110 MsG0180004538.01.T01:CDS 35.0%
TCAGCTTCAAATATCTCAGT+TGG - Chr1:79360790-79360809 None:intergenic 35.0%
TCTGAAGATTCTCATGTTCA+AGG + Chr1:79360049-79360068 MsG0180004538.01.T01:CDS 35.0%
TCTTACATTTCTGACAGAGT+AGG - Chr1:79359493-79359512 None:intergenic 35.0%
TTCCCATCATTTGTACAGTT+TGG + Chr1:79359548-79359567 MsG0180004538.01.T01:CDS 35.0%
TTCTCATGTTCAAGGTGATA+CGG + Chr1:79360057-79360076 MsG0180004538.01.T01:CDS 35.0%
TTGAACTTACCACAAGCAAT+GGG - Chr1:79360358-79360377 None:intergenic 35.0%
TTTATCACTCAACACCCTAT+TGG - Chr1:79359219-79359238 None:intergenic 35.0%
TTTGAACTTACCACAAGCAA+TGG - Chr1:79360359-79360378 None:intergenic 35.0%
TTTGAAGATTGTGACTCCAT+TGG - Chr1:79359767-79359786 None:intergenic 35.0%
! AAACCAGCCTCTAAAAGTAA+TGG + Chr1:79359605-79359624 MsG0180004538.01.T01:CDS 35.0%
! AACATGAATGCCGACATTTT+CGG - Chr1:79360590-79360609 None:intergenic 35.0%
! ATTAGCCTCTTTGAGAAAAC+TGG + Chr1:79360637-79360656 MsG0180004538.01.T01:CDS 35.0%
! CTCAATCTTTGGAAGATCAA+GGG + Chr1:79360819-79360838 MsG0180004538.01.T01:CDS 35.0%
! CTTGGGCAATTTTCAGAAAT+TGG + Chr1:79360488-79360507 MsG0180004538.01.T01:CDS 35.0%
! GCACATGTTTTCATACATGA+AGG - Chr1:79359680-79359699 None:intergenic 35.0%
! TCACGCTTCAGATAATTTTC+TGG - Chr1:79360535-79360554 None:intergenic 35.0%
! TCAGATTTTGCCGAAAATGT+CGG + Chr1:79360577-79360596 MsG0180004538.01.T01:CDS 35.0%
! TTTCTCCAGTTTTCTCAAAG+AGG - Chr1:79360645-79360664 None:intergenic 35.0%
!! AAGCTGCTTTCAAGTTGATT+GGG + Chr1:79359189-79359208 MsG0180004538.01.T01:CDS 35.0%
!! ATCTGTAGTTTTCTGAGAGT+TGG - Chr1:79360386-79360405 None:intergenic 35.0%
!! TGTTCCACCATTACTTTTAG+AGG - Chr1:79359615-79359634 None:intergenic 35.0%
!! TTGAATCTCTCTGTTGACTT+TGG - Chr1:79359824-79359843 None:intergenic 35.0%
!! TTTTAGAAGGAACAGCATCA+TGG - Chr1:79359976-79359995 None:intergenic 35.0%
!!! TTACTTTTAGAGGCTGGTTT+TGG - Chr1:79359605-79359624 None:intergenic 35.0%
AAATCTTGGCATAGCATCAG+TGG - Chr1:79360230-79360249 None:intergenic 40.0%
ATCTGGATCAGGACAAACAA+TGG - Chr1:79360137-79360156 None:intergenic 40.0%
CAAGCTGTCTAAGTCTGATA+TGG + Chr1:79359052-79359071 MsG0180004538.01.T01:CDS 40.0%
CAAGTAATCTGCAGCTTGAA+AGG - Chr1:79360280-79360299 None:intergenic 40.0%
CCTTGATCTTCCAAAGATTG+AGG - Chr1:79360821-79360840 None:intergenic 40.0%
CGTGTATGAGGGAATTTGAT+GGG - Chr1:79360704-79360723 None:intergenic 40.0%
CTTACCTAGGAAAAGTGAAG+GGG + Chr1:79360611-79360630 MsG0180004538.01.T01:CDS 40.0%
CTTCAAATATCTCAGTTGGC+AGG - Chr1:79360786-79360805 None:intergenic 40.0%
CTTTCAAGCTGCAGATTACT+TGG + Chr1:79360278-79360297 MsG0180004538.01.T01:CDS 40.0%
GCACCAAACTGTACAAATGA+TGG - Chr1:79359554-79359573 None:intergenic 40.0%
GCGGTCTTTATACGACATAA+AGG + Chr1:79359244-79359263 MsG0180004538.01.T01:CDS 40.0%
GCTTACCTAGGAAAAGTGAA+GGG + Chr1:79360610-79360629 MsG0180004538.01.T01:CDS 40.0%
TACCTAGTGTTTCCCAAGAA+GGG + Chr1:79360460-79360479 MsG0180004538.01.T01:CDS 40.0%
TATTCCTGTGTCCAAACCAA+TGG + Chr1:79359748-79359767 MsG0180004538.01.T01:CDS 40.0%
TCAACAGAGAGATTCAACAC+TGG + Chr1:79359827-79359846 MsG0180004538.01.T01:CDS 40.0%
TCAGATGGGGATTCAAAGAA+GGG - Chr1:79359388-79359407 None:intergenic 40.0%
TCGAATTCAAAGCAACCTCT+TGG - Chr1:79360754-79360773 None:intergenic 40.0%
TCGTGTATGAGGGAATTTGA+TGG - Chr1:79360705-79360724 None:intergenic 40.0%
TCTCAGAAAACTACAGATCG+TGG + Chr1:79360388-79360407 MsG0180004538.01.T01:CDS 40.0%
TGCTTACCTAGGAAAAGTGA+AGG + Chr1:79360609-79360628 MsG0180004538.01.T01:CDS 40.0%
TGTCTAAGTCTGATATGGAC+TGG + Chr1:79359057-79359076 MsG0180004538.01.T01:CDS 40.0%
TGTTCAAGGTGATACGGTAT+TGG + Chr1:79360063-79360082 MsG0180004538.01.T01:CDS 40.0%
TGTTGAGTGATAAAGCAACG+CGG + Chr1:79359225-79359244 MsG0180004538.01.T01:CDS 40.0%
TTACCTAGTGTTTCCCAAGA+AGG + Chr1:79360459-79360478 MsG0180004538.01.T01:CDS 40.0%
TTCAGATGGGGATTCAAAGA+AGG - Chr1:79359389-79359408 None:intergenic 40.0%
TTCGATGATTCATCTTGTCG+TGG - Chr1:79360001-79360020 None:intergenic 40.0%
! AACATCAGCATACAGCCTTT+TGG - Chr1:79358979-79358998 None:intergenic 40.0%
! ACAAATGATGGGAAAGTCTG+TGG - Chr1:79359542-79359561 None:intergenic 40.0%
! AGATTGTGACTCCATTGGTT+TGG - Chr1:79359762-79359781 None:intergenic 40.0%
! CCTCAATCTTTGGAAGATCA+AGG + Chr1:79360818-79360837 MsG0180004538.01.T01:CDS 40.0%
! CTAGAAGGCATATCTGAATC+TGG - Chr1:79360106-79360125 None:intergenic 40.0%
! TCTTGTCGTGGCTTTTTAGA+AGG - Chr1:79359989-79360008 None:intergenic 40.0%
!! AAGTCTGATATGGACTGGTA+TGG + Chr1:79359062-79359081 MsG0180004538.01.T01:CDS 40.0%
!! AGCTGCTTTCAAGTTGATTG+GGG + Chr1:79359190-79359209 MsG0180004538.01.T01:CDS 40.0%
!! AGTTTGCTAACAAGGCCAAA+AGG + Chr1:79358961-79358980 MsG0180004538.01.T01:CDS 40.0%
!! GAAGCGTGAATTTGCTTTTG+TGG + Chr1:79360546-79360565 MsG0180004538.01.T01:CDS 40.0%
!! GAAGCTGCTTTCAAGTTGAT+TGG + Chr1:79359188-79359207 MsG0180004538.01.T01:CDS 40.0%
!! TAAACCCCTTCACTTTTCCT+AGG - Chr1:79360618-79360637 None:intergenic 40.0%
!! TTAGGAACTTGATTTGCTGC+AGG - Chr1:79359329-79359348 None:intergenic 40.0%
!!! TGAAACGTGTTGCTTTTGTC+TGG - Chr1:79359930-79359949 None:intergenic 40.0%
AATCTGCAGCTTGAAAGGGA+AGG - Chr1:79360275-79360294 None:intergenic 45.0%
AGGTTTCCCATTAGAGGGAT+GGG - Chr1:79359309-79359328 None:intergenic 45.0%
AGTTGATTGGGGAAGCCAAT+AGG + Chr1:79359201-79359220 MsG0180004538.01.T01:CDS 45.0%
ATGAAGATGGCGAGGTTCAT+TGG + Chr1:79360317-79360336 MsG0180004538.01.T01:CDS 45.0%
ATTCCCTCATACACGATGAG+TGG + Chr1:79360709-79360728 MsG0180004538.01.T01:CDS 45.0%
CAAGCTGCAGATTACTTGGT+TGG + Chr1:79360282-79360301 MsG0180004538.01.T01:CDS 45.0%
CAGATGGGGATTCAAAGAAG+GGG - Chr1:79359387-79359406 None:intergenic 45.0%
CAGCATCATGGTCATCTTCA+TGG - Chr1:79359964-79359983 None:intergenic 45.0%
CTGCACATTGTCCAGAATGT+CGG - Chr1:79359422-79359441 None:intergenic 45.0%
GTTGATTGGGGAAGCCAATA+GGG + Chr1:79359202-79359221 MsG0180004538.01.T01:CDS 45.0%
TAACAAGGATGACGCTGTGA+AGG + Chr1:79358884-79358903 MsG0180004538.01.T01:CDS 45.0%
TCAGGACAAACAATGGTCTC+TGG - Chr1:79360130-79360149 None:intergenic 45.0%
TCCCAAGAAGGGAGAAACTT+GGG + Chr1:79360471-79360490 MsG0180004538.01.T01:CDS 45.0%
TGTGAACCTCACAAACAGCA+AGG - Chr1:79359019-79359038 None:intergenic 45.0%
TTCCCAAGAAGGGAGAAACT+TGG + Chr1:79360470-79360489 MsG0180004538.01.T01:CDS 45.0%
TTCCCTCATACACGATGAGT+GGG + Chr1:79360710-79360729 MsG0180004538.01.T01:CDS 45.0%
! ACAATGGTCTCTGGACTAGA+AGG - Chr1:79360121-79360140 None:intergenic 45.0%
! AGATGCTGCAGCTCTAACAT+GGG - Chr1:79359276-79359295 None:intergenic 45.0%
! AGGTGATACGGTATTGGAGT+CGG + Chr1:79360069-79360088 MsG0180004538.01.T01:CDS 45.0%
! CCAGCCTCTAAAAGTAATGG+TGG + Chr1:79359608-79359627 MsG0180004538.01.T01:CDS 45.0%
! GAAGGCATATCTGAATCTGG+TGG - Chr1:79360103-79360122 None:intergenic 45.0%
! GGCATTCATGTTGCTTACCT+AGG + Chr1:79360598-79360617 MsG0180004538.01.T01:CDS 45.0%
! TAGATGCTGCAGCTCTAACA+TGG - Chr1:79359277-79359296 None:intergenic 45.0%
! TCTTTGGAAGATCAAGGGAG+AGG + Chr1:79360824-79360843 MsG0180004538.01.T01:CDS 45.0%
! TGCTTTGAATTCGATCCTGC+TGG + Chr1:79360760-79360779 MsG0180004538.01.T01:CDS 45.0%
!! CCACCATTACTTTTAGAGGC+TGG - Chr1:79359611-79359630 None:intergenic 45.0%
!! CGCACTGAAGTTTGCTAACA+AGG + Chr1:79358953-79358972 MsG0180004538.01.T01:CDS 45.0%
!! CTCTCTGTTGACTTTGGTTC+TGG - Chr1:79359818-79359837 None:intergenic 45.0%
!! TCAGATCCTTGCTGTTTGTG+AGG + Chr1:79359010-79359029 MsG0180004538.01.T01:CDS 45.0%
!!! CTTTTAGAGGCTGGTTTTGG+TGG - Chr1:79359602-79359621 None:intergenic 45.0%
ACACGATGAGTGGGACTGAA+AGG + Chr1:79360719-79360738 MsG0180004538.01.T01:CDS 50.0%
ACCTCATCCCATCCCTCTAA+TGG + Chr1:79359299-79359318 MsG0180004538.01.T01:CDS 50.0%
AGTCCCACTCATCGTGTATG+AGG - Chr1:79360716-79360735 None:intergenic 50.0%
ATGAGTGGGACTGAAAGGGA+AGG + Chr1:79360724-79360743 MsG0180004538.01.T01:CDS 50.0%
CACGATGAGTGGGACTGAAA+GGG + Chr1:79360720-79360739 MsG0180004538.01.T01:CDS 50.0%
CAGGTTTCCCATTAGAGGGA+TGG - Chr1:79359310-79359329 None:intergenic 50.0%
CCTCATCCCATCCCTCTAAT+GGG + Chr1:79359300-79359319 MsG0180004538.01.T01:CDS 50.0%
CCTGCGTTGGAACCTTTATC+GGG - Chr1:79359577-79359596 None:intergenic 50.0%
CGACATTCTGGACAATGTGC+AGG + Chr1:79359420-79359439 MsG0180004538.01.T01:CDS 50.0%
CTCCCTTCTTGGGAAACACT+AGG - Chr1:79360465-79360484 None:intergenic 50.0%
CTGCGTTGGAACCTTTATCG+GGG - Chr1:79359576-79359595 None:intergenic 50.0%
GAACCTCGCCATCTTCATCT+GGG - Chr1:79360315-79360334 None:intergenic 50.0%
GAAGCTGACCCAGATGAAGA+TGG + Chr1:79360304-79360323 MsG0180004538.01.T01:CDS 50.0%
GCAGATTTGCCCATTGCTTG+TGG + Chr1:79360346-79360365 MsG0180004538.01.T01:CDS 50.0%
GCCCAAGTTTCTCCCTTCTT+GGG - Chr1:79360475-79360494 None:intergenic 50.0%
GCCTGCGTTGGAACCTTTAT+CGG - Chr1:79359578-79359597 None:intergenic 50.0%
GCTGCAGGTTTCCCATTAGA+GGG - Chr1:79359314-79359333 None:intergenic 50.0%
GTCCCACTCATCGTGTATGA+GGG - Chr1:79360715-79360734 None:intergenic 50.0%
GTCTGCACATCCACTACCAA+CGG - Chr1:79359639-79359658 None:intergenic 50.0%
TCTGCACATCCACTACCAAC+GGG - Chr1:79359638-79359657 None:intergenic 50.0%
TGAACCTCGCCATCTTCATC+TGG - Chr1:79360316-79360335 None:intergenic 50.0%
TGCCCAAGTTTCTCCCTTCT+TGG - Chr1:79360476-79360495 None:intergenic 50.0%
TGCTGCAGGTTTCCCATTAG+AGG - Chr1:79359315-79359334 None:intergenic 50.0%
! AGTAATGGTGGAACACCCGT+TGG + Chr1:79359620-79359639 MsG0180004538.01.T01:CDS 50.0%
!! ACAGTTTGGTGCCCCGATAA+AGG + Chr1:79359562-79359581 MsG0180004538.01.T01:CDS 50.0%
!! GAAAGGGAAGGTGTTCCAAG+AGG + Chr1:79360736-79360755 MsG0180004538.01.T01:CDS 50.0%
!! GACTCCATTGGTTTGGACAC+AGG - Chr1:79359755-79359774 None:intergenic 50.0%
AACCTGCACAGCCGACATTC+TGG + Chr1:79359408-79359427 MsG0180004538.01.T01:CDS 55.0%
CCCATTAGAGGGATGGGATG+AGG - Chr1:79359303-79359322 None:intergenic 55.0%
CCCGATAAAGGTTCCAACGC+AGG + Chr1:79359574-79359593 MsG0180004538.01.T01:CDS 55.0%
CGGCTGTGCAGGTTTCAGAT+GGG - Chr1:79359402-79359421 None:intergenic 55.0%
GGCTGTGCAGGTTTCAGATG+GGG - Chr1:79359401-79359420 None:intergenic 55.0%
TCGGCTGTGCAGGTTTCAGA+TGG - Chr1:79359403-79359422 None:intergenic 55.0%
TGACCCAGATGAAGATGGCG+AGG + Chr1:79360309-79360328 MsG0180004538.01.T01:CDS 55.0%
ATCTCAGTTGGCAGGCCAGC+AGG - Chr1:79360778-79360797 None:intergenic 60.0%
! GGTGGAACACCCGTTGGTAG+TGG + Chr1:79359626-79359645 MsG0180004538.01.T01:CDS 60.0%
! GTCCAGAATGTCGGCTGTGC+AGG - Chr1:79359413-79359432 None:intergenic 60.0%
!! GGTTTTGGTGGAGCCTGCGT+TGG - Chr1:79359590-79359609 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 79358876 79360855 79358876 ID=MsG0180004538.01;Name=MsG0180004538.01
Chr1 mRNA 79358876 79360855 79358876 ID=MsG0180004538.01.T01;Parent=MsG0180004538.01;Name=MsG0180004538.01.T01;_AED=0.41;_eAED=0.41;_QI=0|-1|0|1|-1|1|1|0|659
Chr1 exon 79358876 79360855 79358876 ID=MsG0180004538.01.T01:exon:45598;Parent=MsG0180004538.01.T01
Chr1 CDS 79358876 79360855 79358876 ID=MsG0180004538.01.T01:cds;Parent=MsG0180004538.01.T01
Gene Sequence

>MsG0180004538.01.T01

ATGGAGTGTAACAAGGATGACGCTGTGAAGGCTAAGCAACTAGCAGAAACTAAAATGCAAAGGGGTGAATTTGTAGACGCACTGAAGTTTGCTAACAAGGCCAAAAGGCTGTATGCTGATGTTGAAAACATTGCTCAGATCCTTGCTGTTTGTGAGGTTCACAATGCTGCACTCAACAAGCTGTCTAAGTCTGATATGGACTGGTATGGAGTTCTTCAGACTGAAAAATTATCCGAGGAAGCAATCATAAAGAAACAGTACAAGAAGCTTGCGCTGCTACTTCATCCTGATAAAAATAAATCTGCTGGTGCAGAAGCTGCTTTCAAGTTGATTGGGGAAGCCAATAGGGTGTTGAGTGATAAAGCAACGCGGTCTTTATACGACATAAAGGTTAAAGCCCATGTTAGAGCTGCAGCATCTAAGACCTCATCCCATCCCTCTAATGGGAAACCTGCAGCAAATCAAGTTCCTAATGCAACAAAACATCAGAAAAAATGTTCTTCAAACTCCCCTTCTTTGAATCCCCATCTGAAACCTGCACAGCCGACATTCTGGACAATGTGCAGGCATTGTAATACCAAATTCCAGTTCTACATATATGTTATAAATAAGGCCCTACTCTGTCAGAAATGTAAGAACTCATTTGTAGCTCTTGCTATGAATCCACAGACTTTCCCATCATTTGTACAGTTTGGTGCCCCGATAAAGGTTCCAACGCAGGCTCCACCAAAACCAGCCTCTAAAAGTAATGGTGGAACACCCGTTGGTAGTGGATGTGCAGACACTTTTGTTCCGTCATATCCTTCATGTATGAAAACATGTGCTAATGGAGTTGGTAAGCAACATAAAGATGAGAAGATTAAGGATGGCTTTATTCCTGTGTCCAAACCAATGGAGTCACAATCTTCAAACAATGTTGGAAGTAAGAGAGTCAGACAACCAGAACCAAAGTCAACAGAGAGATTCAACACTGGAAATGATTATGAAAAGAAAGGTTTCAATGTTCGAGAAAATGATGCCGATCCTTCAAGATTGAATGTCAGAAGGTCTTCCAGACAAAAGCAACACGTTTCATATAAGGAAAACCATGAAGATGACCATGATGCTGTTCCTTCTAAAAAGCCACGACAAGATGAATCATCGAACAATGATGAAGTTGAGAATAAGAACGTGTCTGAAGATTCTCATGTTCAAGGTGATACGGTATTGGAGTCGGATGTTGATCCACCAGATTCAGATATGCCTTCTAGTCCAGAGACCATTGTTTGTCCTGATCCAGATTTCAATAATTTTGAGAAGGACAAGGCTGATGATTGTTTTGCTGTAAATCAATTATGGGCAATTTATGATACCACTGATGCTATGCCAAGATTTTATGCTCTTGTCAAGAAAGTGACCTTCCCTTTCAAGCTGCAGATTACTTGGTTGGAAGCTGACCCAGATGAAGATGGCGAGGTTCATTGGTATAATGCAGATTTGCCCATTGCTTGTGGTAAGTTCAAACTTGCCAACTCTCAGAAAACTACAGATCGTGGTATGTTCTCTCATCAGATTCAGTTTATAAAAGGAAACGAGAAAGATTCTTACCTAGTGTTTCCCAAGAAGGGAGAAACTTGGGCAATTTTCAGAAATTGGGATATCAATTGGAGTTCTAATCCAGAAAATTATCTGAAGCGTGAATTTGCTTTTGTGGAAATCTTATCAGATTTTGCCGAAAATGTCGGCATTCATGTTGCTTACCTAGGAAAAGTGAAGGGGTTTATTAGCCTCTTTGAGAAAACTGGAGAAAACACATTTATTCCACCGAATGAATTGTACAGATTTTCCCATCAAATTCCCTCATACACGATGAGTGGGACTGAAAGGGAAGGTGTTCCAAGAGGTTGCTTTGAATTCGATCCTGCTGGCCTGCCAACTGAGATATTTGAAGCTGAAAAAGATTCCTCAATCTTTGGAAGATCAAGGGAGAGGTATGAATAA

Protein sequence

>MsG0180004538.01.T01

MECNKDDAVKAKQLAETKMQRGEFVDALKFANKAKRLYADVENIAQILAVCEVHNAALNKLSKSDMDWYGVLQTEKLSEEAIIKKQYKKLALLLHPDKNKSAGAEAAFKLIGEANRVLSDKATRSLYDIKVKAHVRAAASKTSSHPSNGKPAANQVPNATKHQKKCSSNSPSLNPHLKPAQPTFWTMCRHCNTKFQFYIYVINKALLCQKCKNSFVALAMNPQTFPSFVQFGAPIKVPTQAPPKPASKSNGGTPVGSGCADTFVPSYPSCMKTCANGVGKQHKDEKIKDGFIPVSKPMESQSSNNVGSKRVRQPEPKSTERFNTGNDYEKKGFNVRENDADPSRLNVRRSSRQKQHVSYKENHEDDHDAVPSKKPRQDESSNNDEVENKNVSEDSHVQGDTVLESDVDPPDSDMPSSPETIVCPDPDFNNFEKDKADDCFAVNQLWAIYDTTDAMPRFYALVKKVTFPFKLQITWLEADPDEDGEVHWYNADLPIACGKFKLANSQKTTDRGMFSHQIQFIKGNEKDSYLVFPKKGETWAIFRNWDINWSSNPENYLKREFAFVEILSDFAENVGIHVAYLGKVKGFISLFEKTGENTFIPPNELYRFSHQIPSYTMSGTEREGVPRGCFEFDPAGLPTEIFEAEKDSSIFGRSRERYE*