AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004583.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004583.01.T01 MTR_1g082920 67.619 210 28 3 1 170 1 210 9.34e-84 263
MsG0180004583.01.T01 MTR_7g113520 40.816 196 69 5 10 170 7 190 2.00e-32 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004583.01.T01 AT5G27550 33.529 170 76 5 38 170 26 195 2.05e-16 77.0
MsG0180004583.01.T01 AT5G27550 33.529 170 76 5 38 170 26 195 2.05e-16 77.0

Find 180 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACCCTCCTCCTTGGTTTA+AGG 0.171517 1:-79937591 None:intergenic
AAAATTCGTAAATTTGAATT+TGG 0.172325 1:-79934189 None:intergenic
AGTGAAAGTGAAAGTGAAAA+TGG 0.189985 1:+79935239 MsG0180004583.01.T01:CDS
TAGGGGCAGCAGTAAGTTTA+TGG 0.221679 1:+79937802 MsG0180004583.01.T01:three_prime_UTR
TTCACTCCTGTTTGGGTTGT+TGG 0.231312 1:+79938249 MsG0180004583.01.T01:three_prime_UTR
AGAAATTGGTTATCCTTCTA+AGG 0.242526 1:-79937404 None:intergenic
TGCTATATTCACTCCTGTTT+GGG 0.247315 1:+79938242 MsG0180004583.01.T01:three_prime_UTR
TTGCTATATTCACTCCTGTT+TGG 0.252229 1:+79938241 MsG0180004583.01.T01:three_prime_UTR
CAAGGTCTCTATTGCAGTTT+AGG 0.259824 1:-79938061 None:intergenic
TACCAGAGGGGATAGCGTTT+GGG 0.320178 1:-79934521 None:intergenic
ATTATACCTTGGTTATCTTC+TGG 0.322817 1:-79935361 None:intergenic
ATTTGATGGGTGTATCTCTT+TGG 0.323016 1:-79937450 None:intergenic
TCATGAGAATTCGTCGGATC+TGG 0.328822 1:+79934716 MsG0180004583.01.T01:CDS
TTTCCTTTCCATTCATTTGA+TGG 0.331856 1:-79937464 None:intergenic
CCACCTCCTTGTGCATGTAC+TGG 0.333065 1:-79937831 MsG0180004582.01.T01:CDS
AGATGGTGGAGGCAAGAAAT+TGG 0.340603 1:-79937418 None:intergenic
CCGACCCCTCTGGCTCCTTA+TGG 0.344994 1:-79937712 MsG0180004582.01.T01:CDS
TTAAGGAGTTCTTTAGTTTG+TGG 0.347915 1:+79937982 MsG0180004583.01.T01:three_prime_UTR
AAGCATCCCACATCCCTTAC+AGG 0.349283 1:+79936495 MsG0180004583.01.T01:three_prime_UTR
TGATTTGAGTACCAAAGTTC+AGG 0.360777 1:+79934770 MsG0180004583.01.T01:CDS
ATCAAAGACTTTCTTCAGAA+TGG 0.364860 1:-79934751 None:intergenic
ATTCATAAACAAGTCTCTTT+CGG 0.366641 1:+79936440 MsG0180004583.01.T01:three_prime_UTR
AGGTCTACTTGTTTGCGAGC+TGG 0.370672 1:-79936863 None:intergenic
GTGTATCTCTTTGGTGGTAT+AGG 0.370928 1:-79937441 None:intergenic
CGTTCATTTCCATGGTGTTT+CGG 0.374836 1:-79934339 None:intergenic
TTACCAGAGGGGATAGCGTT+TGG 0.377497 1:-79934522 None:intergenic
GGTCTACTTGTTTGCGAGCT+GGG 0.379163 1:-79936862 None:intergenic
TTGGTCTAATCGCTGGCAAT+GGG 0.390006 1:-79937752 MsG0180004582.01.T01:CDS
AAATACTGATCAAATTTAAA+CGG 0.392006 1:-79935335 None:intergenic
GCGCTGAGCTTGGACTTACT+TGG 0.396496 1:-79936781 None:intergenic
TTAGTTTGTGGAGTCCTCTC+AGG 0.398755 1:+79937994 MsG0180004583.01.T01:three_prime_UTR
CTTGTTGAAGCTCGTGTTCA+TGG 0.402872 1:+79936072 MsG0180004583.01.T01:three_prime_UTR
ATCTGAGAATGCCCCTTAGA+AGG 0.404624 1:+79937391 MsG0180004583.01.T01:three_prime_UTR
TTGAACTCTATTCAGCTTCT+CGG 0.405762 1:+79934986 MsG0180004583.01.T01:CDS
GTAAGGGATGTGGGATGCTT+TGG 0.409033 1:-79936492 None:intergenic
AACAAGTCTCTTTCGGCACT+TGG 0.410139 1:+79936447 MsG0180004583.01.T01:three_prime_UTR
TTCCTTTCCATTCATTTGAT+GGG 0.410553 1:-79937463 None:intergenic
AGGGGCATTCTCAGATTTGA+AGG 0.413329 1:-79937384 None:intergenic
GCTTACGGACAAACCGGAAC+TGG 0.415639 1:+79935541 MsG0180004583.01.T01:CDS
ATGATTATTCACCTGAACTT+TGG 0.418948 1:-79934781 None:intergenic
ACGAAAACAAATTACCTGTA+AGG 0.421064 1:-79936509 None:intergenic
GATGAAAACAGTATGTCTAA+TGG 0.422830 1:+79934690 MsG0180004583.01.T01:CDS
CACTCCGTACCTCAACTTCA+AGG 0.426038 1:+79937662 MsG0180004583.01.T01:three_prime_UTR
TGGTGGTTTCTTATCTGTCA+TGG 0.428905 1:-79937355 None:intergenic
TCAAAGACTTTCTTCAGAAT+GGG 0.429245 1:-79934750 None:intergenic
CACCTCCTTGTGCATGTACT+GGG 0.430179 1:-79937830 MsG0180004582.01.T01:CDS
AAGGTCTATTGCAGTTTAGA+TGG 0.430439 1:-79937958 None:intergenic
GTGAAAGTGAAAGTGAAAAT+GGG 0.433185 1:+79935240 MsG0180004583.01.T01:CDS
CTCTTTGGTGGTATAGGAGA+TGG 0.442002 1:-79937435 None:intergenic
GGAGTAGTAATTTCAGATGT+TGG 0.444403 1:-79937637 None:intergenic
GATGGCAAGAGTGATGATTT+CGG 0.445087 1:-79937940 MsG0180004582.01.T01:CDS
TTTCTGCTATTTGATTCTCC+AGG 0.452978 1:-79937240 None:intergenic
GGCAATGGAAGCCCTGCTCT+TGG 0.454824 1:-79937536 None:intergenic
TATATTCAATTAAATTCGAC+GGG 0.457531 1:-79934132 None:intergenic
TTTGATCCAACAACCCAAAC+AGG 0.458402 1:-79938255 None:intergenic
TAAGTCCAAGCTCAGCGCTT+AGG 0.459979 1:+79936786 MsG0180004583.01.T01:three_prime_UTR
ACCTATTGCTACATCAGTAT+TGG 0.462076 1:+79935496 MsG0180004583.01.T01:CDS
CAAAACTTCGAGGCTTGTAA+AGG 0.469870 1:-79934966 None:intergenic
AGGGGCAGCAGTAAGTTTAT+GGG 0.470836 1:+79937803 MsG0180004583.01.T01:three_prime_UTR
GTTGGTCTAATCGCTGGCAA+TGG 0.472803 1:-79937753 MsG0180004582.01.T01:CDS
TCCAATACTGATGTAGCAAT+AGG 0.474301 1:-79935497 None:intergenic
CAAATTACCTGTAAGGGATG+TGG 0.480040 1:-79936502 None:intergenic
TGATATCTTGTTATGATCGT+CGG 0.480190 1:+79938184 MsG0180004583.01.T01:three_prime_UTR
CAGAAAACAAGAGCCACCTT+TGG 0.480931 1:+79936346 MsG0180004583.01.T01:three_prime_UTR
TAAATTTGAATTTGGTTACA+AGG 0.483029 1:-79934181 None:intergenic
TCCCCAAACGCTATCCCCTC+TGG 0.486744 1:+79934519 MsG0180004583.01.T01:CDS
CATGAGAATTCGTCGGATCT+GGG 0.487049 1:+79934717 MsG0180004583.01.T01:CDS
AAGTAATGAAAACTCTGATT+CGG 0.491392 1:+79934665 MsG0180004583.01.T01:CDS
GGAAACAGAGTCAGATCTGT+TGG 0.492722 1:+79936126 MsG0180004583.01.T01:three_prime_UTR
AGATACACCCATCAAATGAA+TGG 0.493454 1:+79937456 MsG0180004583.01.T01:three_prime_UTR
TGATGGGTGTATCTCTTTGG+TGG 0.502676 1:-79937447 None:intergenic
GCAATGGAGACCCTCCTCCT+TGG 0.503128 1:-79937598 None:intergenic
GCAGTGTATCAGCAGCCATA+AGG 0.504817 1:+79937697 MsG0180004583.01.T01:three_prime_UTR
TGTGGGATGCTTTGGATGAA+AGG 0.504934 1:-79936484 None:intergenic
AACTGCAATAGACCTTGTTA+AGG 0.505525 1:+79937965 MsG0180004583.01.T01:three_prime_UTR
CCAGTACATGCACAAGGAGG+TGG 0.507000 1:+79937831 MsG0180004583.01.T01:three_prime_UTR
GAATAGAGTTCAAAACTTCG+AGG 0.507690 1:-79934976 None:intergenic
TCTCTCCTAAGCGCTGAGCT+TGG 0.508189 1:-79936791 None:intergenic
ACCGATGTTGGTCTAATCGC+TGG 0.508342 1:-79937759 MsG0180004582.01.T01:CDS
AAGAATCATTACATACCAAT+GGG 0.510595 1:-79936181 None:intergenic
GAAATTGGTTATCCTTCTAA+GGG 0.512371 1:-79937403 None:intergenic
ATTGTGACAGGTACGGGACC+TGG 0.518658 1:+79937222 MsG0180004583.01.T01:intron
GTAATTTCAGATGTTGGCTC+AGG 0.521658 1:-79937631 None:intergenic
GCTGTTCAAGTACAAGCAAA+TGG 0.522611 1:+79936892 MsG0180004583.01.T01:three_prime_UTR
GAGATAAAGCAAGCTGCAGA+AGG 0.523443 1:+79936030 MsG0180004583.01.T01:three_prime_UTR
ATTTGGTTACAAGGTTTGAA+AGG 0.527340 1:-79934172 None:intergenic
ACACGAGCTTCAACAAGTCC+AGG 0.527659 1:-79936066 None:intergenic
AGCTTAGCAGCCGTTCCCAT+TGG 0.528012 1:+79936166 MsG0180004583.01.T01:three_prime_UTR
TCACTTTCACTTTCACTGAA+AGG 0.531127 1:-79935233 None:intergenic
CTCAGATTTGAAGGATTCAG+TGG 0.534244 1:-79937375 None:intergenic
ACTTGAAGCTCATTCTCAAG+TGG 0.537814 1:-79935287 None:intergenic
ATCTGCGTTGTTGATTGTAC+AGG 0.538792 1:-79937568 None:intergenic
GTGTGGGAATTGCTCAAGAC+TGG 0.539538 1:+79936105 MsG0180004583.01.T01:three_prime_UTR
CTTTGGCTAGTAGACTTAGC+AGG 0.540176 1:+79936363 MsG0180004583.01.T01:three_prime_UTR
TAAGAATCATTACATACCAA+TGG 0.542480 1:-79936182 None:intergenic
GTGGCAAAATTCAGTGAACC+AGG 0.543405 1:-79936815 None:intergenic
CGAAAACAAATTACCTGTAA+GGG 0.543929 1:-79936508 None:intergenic
AAATTACCTGTAAGGGATGT+GGG 0.548166 1:-79936501 None:intergenic
AGATCCTTAAACCAAGGAGG+AGG 0.548711 1:+79937587 MsG0180004583.01.T01:three_prime_UTR
TTGGCATTAGGATTTGAAGA+AGG 0.550106 1:+79934901 MsG0180004583.01.T01:intron
GGTCTTCAAAGACCAAGAGC+AGG 0.551946 1:+79937524 MsG0180004583.01.T01:three_prime_UTR
CTATATTCAATTAAATTCGA+CGG 0.553399 1:-79934133 None:intergenic
CACGGCAAACCTTGAAGTTG+AGG 0.555517 1:-79937671 MsG0180004582.01.T01:CDS
TACAGGTGGTCTCATGGCAA+TGG 0.555664 1:-79937551 None:intergenic
CGGCTTCTTTGAAGAGTCTG+AGG 0.555937 1:-79935315 None:intergenic
TAACGTACCGTTCATTTCCA+TGG 0.556666 1:-79934347 None:intergenic
AGCTGAGGGAGAAAGACTAA+AGG 0.558146 1:+79936410 MsG0180004583.01.T01:three_prime_UTR
CTTCTTCTTCCGAAACACCA+TGG 0.559067 1:+79934330 MsG0180004583.01.T01:exon
ACTGCTGCCCCTAGTGACAT+TGG 0.560663 1:-79937792 MsG0180004582.01.T01:CDS
GATACAACACCAATGTCACT+AGG 0.563420 1:+79937783 MsG0180004583.01.T01:three_prime_UTR
GGAAAGGAAAATTCTGCAGA+AGG 0.565261 1:+79937477 MsG0180004583.01.T01:three_prime_UTR
TTTGGTGGTATAGGAGATGG+TGG 0.567224 1:-79937432 None:intergenic
GCTAAGCTCATTAGCAGAGG+TGG 0.567999 1:-79936151 None:intergenic
CTCAACTTCAAGGTTTGCCG+TGG 0.569424 1:+79937672 MsG0180004583.01.T01:three_prime_UTR
CGTCGGTGAGAATTAATCAA+TGG 0.573994 1:+79936322 MsG0180004583.01.T01:three_prime_UTR
ATTGCTACATCAGTATTGGA+TGG 0.574193 1:+79935500 MsG0180004583.01.T01:CDS
ACCAGAGGGGATAGCGTTTG+GGG 0.574922 1:-79934520 None:intergenic
GGTCTCTATTGCAGTTTAGG+TGG 0.577065 1:-79938058 None:intergenic
CTCAGGACGGAGTGTAGCAA+TGG 0.577174 1:-79937614 None:intergenic
CTTAGCAGGTAGCGAGCGTG+TGG 0.577481 1:+79936377 MsG0180004583.01.T01:three_prime_UTR
GAAGGGACACAAGAAGTCCC+TGG 0.580973 1:+79936048 MsG0180004583.01.T01:three_prime_UTR
CCATAAGGAGCCAGAGGGGT+CGG 0.582769 1:+79937712 MsG0180004583.01.T01:three_prime_UTR
TAATGAAAACTCTGATTCGG+TGG 0.582978 1:+79934668 MsG0180004583.01.T01:CDS
AGCAGCCATAAGGAGCCAGA+GGG 0.589672 1:+79937707 MsG0180004583.01.T01:three_prime_UTR
TGCGTTGTTGATTGTACAGG+TGG 0.590033 1:-79937565 None:intergenic
AATTTGAATACCGACCCCTC+TGG 0.590267 1:-79937722 MsG0180004582.01.T01:CDS
CAGCAGCCATAAGGAGCCAG+AGG 0.594403 1:+79937706 MsG0180004583.01.T01:three_prime_UTR
GATGAGTATTTATACGATGG+AGG 0.596580 1:-79937321 None:intergenic
CACCCATCAAATGAATGGAA+AGG 0.596811 1:+79937461 MsG0180004583.01.T01:three_prime_UTR
AGATTTGAAGGATTCAGTGG+TGG 0.599625 1:-79937372 None:intergenic
TCAATGACAACAAATACTGA+AGG 0.600193 1:+79937503 MsG0180004583.01.T01:three_prime_UTR
ATACAACACCAATGTCACTA+GGG 0.604687 1:+79937784 MsG0180004583.01.T01:three_prime_UTR
GAAGTTGAGGTACGGAGTGG+AGG 0.605261 1:-79937658 MsG0180004582.01.T01:CDS
CTGGGCCGCTCTCAATTCCA+CGG 0.605670 1:-79936844 None:intergenic
TGATTGTACAGGTGGTCTCA+TGG 0.606357 1:-79937557 None:intergenic
CTGCTGATACACTGCTTCCA+CGG 0.607419 1:-79937689 MsG0180004582.01.T01:CDS
CGAAACACCATGGAAATGAA+CGG 0.608231 1:+79934340 MsG0180004583.01.T01:exon
TTTCAGATGTTGGCTCAGGA+CGG 0.610788 1:-79937627 None:intergenic
CAACGCAGATCCTTAAACCA+AGG 0.614192 1:+79937581 MsG0180004583.01.T01:three_prime_UTR
TGGAATTCATGAGAATTCGT+CGG 0.614398 1:+79934710 MsG0180004583.01.T01:CDS
GGTGTTGTATCAACCGATGT+TGG 0.619578 1:-79937771 MsG0180004582.01.T01:CDS
CTCAATTCCACGGACACGAG+TGG 0.621107 1:-79936834 None:intergenic
GATCCTTAAACCAAGGAGGA+GGG 0.623391 1:+79937588 MsG0180004583.01.T01:three_prime_UTR
CTGCTAAGTCTACTAGCCAA+AGG 0.628637 1:-79936362 None:intergenic
ACATGCACAAGGAGGTGGGA+TGG 0.632494 1:+79937836 MsG0180004583.01.T01:three_prime_UTR
GCTGATGAGTATTTATACGA+TGG 0.633546 1:-79937324 None:intergenic
GTCTTCAAAGACCAAGAGCA+GGG 0.633658 1:+79937525 MsG0180004583.01.T01:three_prime_UTR
TCAGCGCTTAGGAGAGACCC+TGG 0.634478 1:+79936797 MsG0180004583.01.T01:three_prime_UTR
CACGCACGCATTGATAAACA+AGG 0.635522 1:-79938079 None:intergenic
GTAGCTGCGATTGCATTGCA+CGG 0.635820 1:+79937858 MsG0180004583.01.T01:three_prime_UTR
TCATTACATACCAATGGGAA+CGG 0.635970 1:-79936176 None:intergenic
CAGTACATGCACAAGGAGGT+GGG 0.636493 1:+79937832 MsG0180004583.01.T01:three_prime_UTR
CTAAGTCTACTAGCCAAAGG+TGG 0.637012 1:-79936359 None:intergenic
CACGAGCTTCAACAAGTCCA+GGG 0.639920 1:-79936065 None:intergenic
TTTCATTTCTCTCAGCTGAG+AGG 0.642420 1:-79937911 MsG0180004582.01.T01:CDS
TTCATGGAACAGAAGATGTG+TGG 0.643113 1:+79936088 MsG0180004583.01.T01:three_prime_UTR
AGATAAAGCAAGCTGCAGAA+GGG 0.648109 1:+79936031 MsG0180004583.01.T01:three_prime_UTR
CAAACCTTGAAGTTGAGGTA+CGG 0.649811 1:-79937666 MsG0180004582.01.T01:CDS
GGTGGTATAGGAGATGGTGG+AGG 0.650249 1:-79937429 None:intergenic
GCCAGCGATTAGACCAACAT+CGG 0.650740 1:+79937758 MsG0180004583.01.T01:three_prime_UTR
AACTAAAGAACTCCTTAACA+AGG 0.653745 1:-79937977 None:intergenic
TCATGGAACAGAAGATGTGT+GGG 0.657856 1:+79936089 MsG0180004583.01.T01:three_prime_UTR
CGTGTCCGTGGAATTGAGAG+CGG 0.661396 1:+79936839 MsG0180004583.01.T01:three_prime_UTR
GCTGCTAAGCTCATTAGCAG+AGG 0.678442 1:-79936154 None:intergenic
AAATTGGTTATCCTTCTAAG+GGG 0.685881 1:-79937402 None:intergenic
GCTCGCAAACAAGTAGACCT+CGG 0.689455 1:+79936866 MsG0180004583.01.T01:three_prime_UTR
CTTGAAGTTGAGGTACGGAG+TGG 0.690344 1:-79937661 MsG0180004582.01.T01:CDS
TTAGCAGGTAGCGAGCGTGT+GGG 0.691694 1:+79936378 MsG0180004583.01.T01:three_prime_UTR
CGCAGATCCTTAAACCAAGG+AGG 0.691862 1:+79937584 MsG0180004583.01.T01:three_prime_UTR
TACAACACCAATGTCACTAG+GGG 0.695804 1:+79937785 MsG0180004583.01.T01:three_prime_UTR
GCTTGTAAAGGATTCAGTCG+CGG 0.697271 1:-79934954 None:intergenic
GCAGCCATAAGGAGCCAGAG+GGG 0.700286 1:+79937708 MsG0180004583.01.T01:three_prime_UTR
GCAGTCCCAGTACATGCACA+AGG 0.700944 1:+79937825 MsG0180004583.01.T01:three_prime_UTR
TGGTCTAATCGCTGGCAATG+GGG 0.706900 1:-79937751 MsG0180004582.01.T01:CDS
TGGCAAAATTCAGTGAACCA+GGG 0.708030 1:-79936814 None:intergenic
GGCAAGAGTGATGATTTCGG+TGG 0.711451 1:-79937937 MsG0180004582.01.T01:CDS
TTTAAGCCAGAAGATAACCA+AGG 0.714136 1:+79935355 MsG0180004583.01.T01:CDS
GTCCCAGTACATGCACAAGG+AGG 0.742773 1:+79937828 MsG0180004583.01.T01:three_prime_UTR
GAATCAAGAACTTACCAGAG+GGG 0.745046 1:-79934533 None:intergenic
TGTACTTGAACAGCTCACCG+AGG 0.771655 1:-79936883 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTTTGTCATAATAAA+GGG + Chr1:79936981-79937000 MsG0180004583.01.T01:intron 10.0%
!!! CTATTTTAAATTTGAAATAA+AGG - Chr1:79935795-79935814 None:intergenic 10.0%
!! AAAATTCGTAAATTTGAATT+TGG - Chr1:79934192-79934211 None:intergenic 15.0%
!! AAATACTGATCAAATTTAAA+CGG - Chr1:79935338-79935357 None:intergenic 15.0%
!! AATAATTGTTATCTAATACT+AGG + Chr1:79935104-79935123 MsG0180004583.01.T01:intron 15.0%
!! ATTATTATAGTTTCATTTCA+CGG + Chr1:79935906-79935925 MsG0180004583.01.T01:intron 15.0%
!! GTAGCAATAATTATTAATTA+GGG - Chr1:79934590-79934609 None:intergenic 15.0%
!! TGTAGCAATAATTATTAATT+AGG - Chr1:79934591-79934610 None:intergenic 15.0%
!!! ATTTTTTCAGTAAACTTATT+AGG + Chr1:79934830-79934849 MsG0180004583.01.T01:intron 15.0%
!!! CATAATTTTTGTCATAATAA+AGG + Chr1:79936980-79936999 MsG0180004583.01.T01:intron 15.0%
!!! TTCAATTGACAATTTTATTT+CGG - Chr1:79935030-79935049 None:intergenic 15.0%
!!! TTTATTTTGTGAATTTTTCT+TGG + Chr1:79934882-79934901 MsG0180004583.01.T01:intron 15.0%
!!! TTTTTTCAGTAAACTTATTA+GGG + Chr1:79934831-79934850 MsG0180004583.01.T01:intron 15.0%
!! AAGAATTTATTGCATACTAT+AGG + Chr1:79936253-79936272 MsG0180004583.01.T01:intron 20.0%
!! AGATAAAGAATTATGTACTA+AGG - Chr1:79936212-79936231 None:intergenic 20.0%
!! AGGTATAAATGCAAATTTAA+AGG + Chr1:79937112-79937131 MsG0180004583.01.T01:intron 20.0%
!! ATAATGAGTTTGTAAGAAAA+TGG + Chr1:79935881-79935900 MsG0180004583.01.T01:intron 20.0%
!! CCTTCAATTTAAAAGAAAAA+AGG - Chr1:79938147-79938166 None:intergenic 20.0%
!! CTGAAAAAATTAAAAAACAC+AGG - Chr1:79934820-79934839 None:intergenic 20.0%
!! TAAATTTGAATTTGGTTACA+AGG - Chr1:79934184-79934203 None:intergenic 20.0%
!! TATTATTTATTATGATGCAG+AGG + Chr1:79935454-79935473 MsG0180004583.01.T01:intron 20.0%
!!! AACAGAGATTTTTTTTTGTT+TGG - Chr1:79934255-79934274 None:intergenic 20.0%
!!! ACAAATTTTCAACTTAAGAT+TGG + Chr1:79936008-79936027 MsG0180004583.01.T01:intron 20.0%
!!! CAATTGAATGTTCTTTTTAT+TGG + Chr1:79935042-79935061 MsG0180004583.01.T01:intron 20.0%
!!! CCTTTTTTCTTTTAAATTGA+AGG + Chr1:79938144-79938163 MsG0180004583.01.T01:three_prime_UTR 20.0%
!!! TTACAGTATTATAGGTTTTT+CGG + Chr1:79935075-79935094 MsG0180004583.01.T01:intron 20.0%
! AAATTAACGAATGAATTGTG+AGG - Chr1:79934389-79934408 None:intergenic 25.0%
! AACTGGTAAAACATTTACAA+TGG + Chr1:79935558-79935577 MsG0180004583.01.T01:intron 25.0%
! AAGAATCATTACATACCAAT+GGG - Chr1:79936184-79936203 None:intergenic 25.0%
! AAGTAATGAAAACTCTGATT+CGG + Chr1:79934665-79934684 MsG0180004583.01.T01:CDS 25.0%
! AATTAACGAATGAATTGTGA+GGG - Chr1:79934388-79934407 None:intergenic 25.0%
! ACTGGTAAAACATTTACAAT+GGG + Chr1:79935559-79935578 MsG0180004583.01.T01:intron 25.0%
! AGTTAAATGTTAGTATGTTG+AGG + Chr1:79935665-79935684 MsG0180004583.01.T01:intron 25.0%
! ATACTATAGGTAATGAAATG+TGG + Chr1:79936266-79936285 MsG0180004583.01.T01:intron 25.0%
! ATTCATAAACAAGTCTCTTT+CGG + Chr1:79936440-79936459 MsG0180004583.01.T01:three_prime_UTR 25.0%
! CAATTATTTCATTTCAGAGT+TGG - Chr1:79937206-79937225 None:intergenic 25.0%
! CCAACTAAAACTAAAAATCA+TGG - Chr1:79937888-79937907 MsG0180004582.01.T01:CDS 25.0%
! GAACACTTGAAGAATTATTT+AGG + Chr1:79935611-79935630 MsG0180004583.01.T01:intron 25.0%
! GTAACAGTTAAAGAAAAACA+TGG - Chr1:79936953-79936972 None:intergenic 25.0%
! TAAGAATCATTACATACCAA+TGG - Chr1:79936185-79936204 None:intergenic 25.0%
! TACAAATGTTAATGACATGA+AGG - Chr1:79936562-79936581 None:intergenic 25.0%
! TAGCTAATAATATTTGTCCT+GGG + Chr1:79936718-79936737 MsG0180004583.01.T01:intron 25.0%
! TGAAATGAAATAATTGTGAC+AGG + Chr1:79937210-79937229 MsG0180004583.01.T01:intron 25.0%
! TGATACATATGTGATTATGA+AGG - Chr1:79937176-79937195 None:intergenic 25.0%
!! AGTTTGAGTTACAGTATTAT+AGG + Chr1:79935067-79935086 MsG0180004583.01.T01:intron 25.0%
!! TAATGTCTGTATTTTGCTTA+CGG + Chr1:79935526-79935545 MsG0180004583.01.T01:CDS 25.0%
!! TACAGTATTATAGGTTTTTC+GGG + Chr1:79935076-79935095 MsG0180004583.01.T01:intron 25.0%
!!! AGAGATTTTTTTTTGTTTGG+TGG - Chr1:79934252-79934271 None:intergenic 25.0%
!!! CCATGATTTTTAGTTTTAGT+TGG + Chr1:79937885-79937904 MsG0180004583.01.T01:three_prime_UTR 25.0%
AAACCTAACAGTTTCACTTA+TGG - Chr1:79937152-79937171 None:intergenic 30.0%
AAAGAATTATGTACTAAGGC+TGG - Chr1:79936208-79936227 None:intergenic 30.0%
AAAGGAAACAAAGAAATTGC+AGG + Chr1:79937026-79937045 MsG0180004583.01.T01:intron 30.0%
AAATTGGTTATCCTTCTAAG+GGG - Chr1:79937405-79937424 None:intergenic 30.0%
AACCTAACAGTTTCACTTAT+GGG - Chr1:79937151-79937170 None:intergenic 30.0%
AACTAAAGAACTCCTTAACA+AGG - Chr1:79937980-79937999 None:intergenic 30.0%
AAGTCTAAGTTGTATAGTTG+AGG - Chr1:79937056-79937075 None:intergenic 30.0%
ACGAAAACAAATTACCTGTA+AGG - Chr1:79936512-79936531 None:intergenic 30.0%
AGAAATTGGTTATCCTTCTA+AGG - Chr1:79937407-79937426 None:intergenic 30.0%
AGTGAAAGTGAAAGTGAAAA+TGG + Chr1:79935239-79935258 MsG0180004583.01.T01:CDS 30.0%
AGTGCATTTCAAATCACATA+GGG - Chr1:79936674-79936693 None:intergenic 30.0%
AGTTCAGGTGAATAATCATA+AGG + Chr1:79934785-79934804 MsG0180004583.01.T01:intron 30.0%
ATCAAAGACTTTCTTCAGAA+TGG - Chr1:79934754-79934773 None:intergenic 30.0%
ATGATTATTCACCTGAACTT+TGG - Chr1:79934784-79934803 None:intergenic 30.0%
ATTAACGAATGAATTGTGAG+GGG - Chr1:79934387-79934406 None:intergenic 30.0%
ATTATACCTTGGTTATCTTC+TGG - Chr1:79935364-79935383 None:intergenic 30.0%
ATTTGGTTACAAGGTTTGAA+AGG - Chr1:79934175-79934194 None:intergenic 30.0%
CAATTAGAGAAGAAGAACTA+AGG - Chr1:79935754-79935773 None:intergenic 30.0%
CGAAAACAAATTACCTGTAA+GGG - Chr1:79936511-79936530 None:intergenic 30.0%
CTGGTAAAACATTTACAATG+GGG + Chr1:79935560-79935579 MsG0180004583.01.T01:intron 30.0%
GAAATTGGTTATCCTTCTAA+GGG - Chr1:79937406-79937425 None:intergenic 30.0%
GAAGATAACCAAGGTATAAT+AGG + Chr1:79935364-79935383 MsG0180004583.01.T01:intron 30.0%
GATGAAAACAGTATGTCTAA+TGG + Chr1:79934690-79934709 MsG0180004583.01.T01:CDS 30.0%
GTAGCTAATAATATTTGTCC+TGG + Chr1:79936717-79936736 MsG0180004583.01.T01:intron 30.0%
GTGAAAGTGAAAGTGAAAAT+GGG + Chr1:79935240-79935259 MsG0180004583.01.T01:CDS 30.0%
TCAAAGACTTTCTTCAGAAT+GGG - Chr1:79934753-79934772 None:intergenic 30.0%
TCAATGACAACAAATACTGA+AGG + Chr1:79937503-79937522 MsG0180004583.01.T01:three_prime_UTR 30.0%
TGAAAGGAAAAAGTGAGTAA+CGG - Chr1:79934159-79934178 None:intergenic 30.0%
TGAAATAATTGTGACAGGTA+CGG + Chr1:79937215-79937234 MsG0180004583.01.T01:intron 30.0%
TTAGGATATCTGAAGAGAAA+GGG + Chr1:79935629-79935648 MsG0180004583.01.T01:intron 30.0%
TTCCTTTCCATTCATTTGAT+GGG - Chr1:79937466-79937485 None:intergenic 30.0%
TTGTAACACCTATTATACCT+TGG - Chr1:79935375-79935394 None:intergenic 30.0%
TTTCCTTTCCATTCATTTGA+TGG - Chr1:79937467-79937486 None:intergenic 30.0%
! CTTAGTTCTTCTTCTCTAAT+TGG + Chr1:79935752-79935771 MsG0180004583.01.T01:intron 30.0%
! GGCAAGAGTAATAATTTTCA+GGG - Chr1:79938040-79938059 None:intergenic 30.0%
! TGATATCTTGTTATGATCGT+CGG + Chr1:79938184-79938203 MsG0180004583.01.T01:three_prime_UTR 30.0%
! TGGCAAGAGTAATAATTTTC+AGG - Chr1:79938041-79938060 None:intergenic 30.0%
! TGTAAATGTTTTACCAGTTC+CGG - Chr1:79935557-79935576 None:intergenic 30.0%
! TGTGAATTTTTCTTGGCATT+AGG + Chr1:79934889-79934908 MsG0180004583.01.T01:intron 30.0%
! TTTAGGATATCTGAAGAGAA+AGG + Chr1:79935628-79935647 MsG0180004583.01.T01:intron 30.0%
!! ACTCTTGAAAAGAAAGTATC+TGG + Chr1:79935139-79935158 MsG0180004583.01.T01:intron 30.0%
!! TTAAGGAGTTCTTTAGTTTG+TGG + Chr1:79937982-79938001 MsG0180004583.01.T01:three_prime_UTR 30.0%
!! TTTGAACGTTTTGATCTACA+AGG - Chr1:79934443-79934462 None:intergenic 30.0%
AAACTCAGGTAATGAACTCA+AGG + Chr1:79935194-79935213 MsG0180004583.01.T01:intron 35.0%
AAATTACCTGTAAGGGATGT+GGG - Chr1:79936504-79936523 None:intergenic 35.0%
AACTGCAATAGACCTTGTTA+AGG + Chr1:79937965-79937984 MsG0180004583.01.T01:three_prime_UTR 35.0%
AAGGTCTATTGCAGTTTAGA+TGG - Chr1:79937961-79937980 None:intergenic 35.0%
ACCTATTGCTACATCAGTAT+TGG + Chr1:79935496-79935515 MsG0180004583.01.T01:CDS 35.0%
AGATACACCCATCAAATGAA+TGG + Chr1:79937456-79937475 MsG0180004583.01.T01:three_prime_UTR 35.0%
ATACAACACCAATGTCACTA+GGG + Chr1:79937784-79937803 MsG0180004583.01.T01:three_prime_UTR 35.0%
ATACCATTGTAAAAGCCTTC+AGG + Chr1:79937087-79937106 MsG0180004583.01.T01:intron 35.0%
ATTGTAAAAGCCTTCAGGAA+AGG + Chr1:79937092-79937111 MsG0180004583.01.T01:intron 35.0%
CAAGCAAAGCAAGATCTAAT+CGG - Chr1:79935861-79935880 None:intergenic 35.0%
CAGTGCATTTCAAATCACAT+AGG - Chr1:79936675-79936694 None:intergenic 35.0%
CATATACTACAGAGCTCTTT+AGG + Chr1:79936615-79936634 MsG0180004583.01.T01:intron 35.0%
CTACAACATGTGCTTTATAC+TGG + Chr1:79936695-79936714 MsG0180004583.01.T01:intron 35.0%
CTCAACGAAAACATTGATCT+AGG + Chr1:79936230-79936249 MsG0180004583.01.T01:intron 35.0%
GAAATAATTGTGACAGGTAC+GGG + Chr1:79937216-79937235 MsG0180004583.01.T01:intron 35.0%
GAAGATAAGAGATCTTCTAG+TGG + Chr1:79935698-79935717 MsG0180004583.01.T01:intron 35.0%
GAATAGAGTTCAAAACTTCG+AGG - Chr1:79934979-79934998 None:intergenic 35.0%
GATGAGTATTTATACGATGG+AGG - Chr1:79937324-79937343 None:intergenic 35.0%
GCTGATGAGTATTTATACGA+TGG - Chr1:79937327-79937346 None:intergenic 35.0%
GGAGTAGTAATTTCAGATGT+TGG - Chr1:79937640-79937659 None:intergenic 35.0%
GTCATAATAAAGGGCAGAAA+AGG + Chr1:79936990-79937009 MsG0180004583.01.T01:intron 35.0%
TCACTTTCACTTTCACTGAA+AGG - Chr1:79935236-79935255 None:intergenic 35.0%
TCATTACATACCAATGGGAA+CGG - Chr1:79936179-79936198 None:intergenic 35.0%
TCCAATACTGATGTAGCAAT+AGG - Chr1:79935500-79935519 None:intergenic 35.0%
TGAATCAAGAACTTACCAGA+GGG - Chr1:79934537-79934556 None:intergenic 35.0%
TGATTTGAGTACCAAAGTTC+AGG + Chr1:79934770-79934789 MsG0180004583.01.T01:CDS 35.0%
TGCATTTATACCTTTCCTGA+AGG - Chr1:79937105-79937124 None:intergenic 35.0%
TGCTATATTCACTCCTGTTT+GGG + Chr1:79938242-79938261 MsG0180004583.01.T01:three_prime_UTR 35.0%
TGGAATTCATGAGAATTCGT+CGG + Chr1:79934710-79934729 MsG0180004583.01.T01:CDS 35.0%
TTCCCATAAGTGAAACTGTT+AGG + Chr1:79937146-79937165 MsG0180004583.01.T01:intron 35.0%
TTGAACTCTATTCAGCTTCT+CGG + Chr1:79934986-79935005 MsG0180004583.01.T01:CDS 35.0%
TTGAGTACATTCTTGCAGAA+TGG + Chr1:79936535-79936554 MsG0180004583.01.T01:intron 35.0%
TTGCTATATTCACTCCTGTT+TGG + Chr1:79938241-79938260 MsG0180004583.01.T01:three_prime_UTR 35.0%
TTGGCATTAGGATTTGAAGA+AGG + Chr1:79934901-79934920 MsG0180004583.01.T01:intron 35.0%
TTTAAGCCAGAAGATAACCA+AGG + Chr1:79935355-79935374 MsG0180004583.01.T01:CDS 35.0%
! ATTGCTACATCAGTATTGGA+TGG + Chr1:79935500-79935519 MsG0180004583.01.T01:CDS 35.0%
! ATTTGATGGGTGTATCTCTT+TGG - Chr1:79937453-79937472 None:intergenic 35.0%
! TATTTTGCTTACGGACAAAC+CGG + Chr1:79935535-79935554 MsG0180004583.01.T01:CDS 35.0%
! TGTTTCCTTTTCGTCATGTT+TGG - Chr1:79937016-79937035 None:intergenic 35.0%
! TTTCCTGAAGGCTTTTACAA+TGG - Chr1:79937093-79937112 None:intergenic 35.0%
! TTTCTGCTATTTGATTCTCC+AGG - Chr1:79937243-79937262 None:intergenic 35.0%
!! TAATGAAAACTCTGATTCGG+TGG + Chr1:79934668-79934687 MsG0180004583.01.T01:CDS 35.0%
AAAGGCCAAACATGACGAAA+AGG + Chr1:79937008-79937027 MsG0180004583.01.T01:intron 40.0%
ACATTTACAATGGGGAACAC+CGG + Chr1:79935568-79935587 MsG0180004583.01.T01:intron 40.0%
ACTTGAAGCTCATTCTCAAG+TGG - Chr1:79935290-79935309 None:intergenic 40.0%
AGATAAAGCAAGCTGCAGAA+GGG + Chr1:79936031-79936050 MsG0180004583.01.T01:three_prime_UTR 40.0%
AGATTTGAAGGATTCAGTGG+TGG - Chr1:79937375-79937394 None:intergenic 40.0%
CAAAACTTCGAGGCTTGTAA+AGG - Chr1:79934969-79934988 None:intergenic 40.0%
CAAACCTTGAAGTTGAGGTA+CGG - Chr1:79937669-79937688 MsG0180004582.01.T01:CDS 40.0%
CAAATTACCTGTAAGGGATG+TGG - Chr1:79936505-79936524 None:intergenic 40.0%
CAAGGTCTCTATTGCAGTTT+AGG - Chr1:79938064-79938083 None:intergenic 40.0%
CACCCATCAAATGAATGGAA+AGG + Chr1:79937461-79937480 MsG0180004583.01.T01:three_prime_UTR 40.0%
CGAAACACCATGGAAATGAA+CGG + Chr1:79934340-79934359 MsG0180004583.01.T01:exon 40.0%
CGTCGGTGAGAATTAATCAA+TGG + Chr1:79936322-79936341 MsG0180004583.01.T01:three_prime_UTR 40.0%
CGTTCATTTCCATGGTGTTT+CGG - Chr1:79934342-79934361 None:intergenic 40.0%
CTAAGGACTCACTTCTTAGT+AGG - Chr1:79935737-79935756 None:intergenic 40.0%
CTCAGATTTGAAGGATTCAG+TGG - Chr1:79937378-79937397 None:intergenic 40.0%
CTGAATCAAGAACTTACCAG+AGG - Chr1:79934538-79934557 None:intergenic 40.0%
CTTGAGAAATATCACTGACG+AGG + Chr1:79935983-79936002 MsG0180004583.01.T01:intron 40.0%
GAATCAAGAACTTACCAGAG+GGG - Chr1:79934536-79934555 None:intergenic 40.0%
GATACAACACCAATGTCACT+AGG + Chr1:79937783-79937802 MsG0180004583.01.T01:three_prime_UTR 40.0%
GATGGCAAGAGTGATGATTT+CGG - Chr1:79937943-79937962 None:intergenic 40.0%
GCTGTTCAAGTACAAGCAAA+TGG + Chr1:79936892-79936911 MsG0180004583.01.T01:three_prime_UTR 40.0%
GGAAAGGAAAATTCTGCAGA+AGG + Chr1:79937477-79937496 MsG0180004583.01.T01:three_prime_UTR 40.0%
TAACGTACCGTTCATTTCCA+TGG - Chr1:79934350-79934369 None:intergenic 40.0%
TACAACACCAATGTCACTAG+GGG + Chr1:79937785-79937804 MsG0180004583.01.T01:three_prime_UTR 40.0%
TCATGGAACAGAAGATGTGT+GGG + Chr1:79936089-79936108 MsG0180004583.01.T01:three_prime_UTR 40.0%
TGGCAAAATTCAGTGAACCA+GGG - Chr1:79936817-79936836 None:intergenic 40.0%
TGGTGGTTTCTTATCTGTCA+TGG - Chr1:79937358-79937377 None:intergenic 40.0%
TTCATGGAACAGAAGATGTG+TGG + Chr1:79936088-79936107 MsG0180004583.01.T01:three_prime_UTR 40.0%
TTTCATTTCTCTCAGCTGAG+AGG - Chr1:79937914-79937933 MsG0180004582.01.T01:CDS 40.0%
! ATCTGCGTTGTTGATTGTAC+AGG - Chr1:79937571-79937590 None:intergenic 40.0%
! GTGTATCTCTTTGGTGGTAT+AGG - Chr1:79937444-79937463 None:intergenic 40.0%
!! GTAATTTCAGATGTTGGCTC+AGG - Chr1:79937634-79937653 None:intergenic 40.0%
AACAAGTCTCTTTCGGCACT+TGG + Chr1:79936447-79936466 MsG0180004583.01.T01:three_prime_UTR 45.0%
AATTTGAATACCGACCCCTC+TGG - Chr1:79937725-79937744 MsG0180004582.01.T01:CDS 45.0%
ACTACAGAGCTCTTTAGGTG+AGG + Chr1:79936620-79936639 MsG0180004583.01.T01:intron 45.0%
AGATCCTTAAACCAAGGAGG+AGG + Chr1:79937587-79937606 MsG0180004583.01.T01:three_prime_UTR 45.0%
AGCTGAGGGAGAAAGACTAA+AGG + Chr1:79936410-79936429 MsG0180004583.01.T01:three_prime_UTR 45.0%
AGGGGCAGCAGTAAGTTTAT+GGG + Chr1:79937803-79937822 MsG0180004583.01.T01:three_prime_UTR 45.0%
ATCTGAGAATGCCCCTTAGA+AGG + Chr1:79937391-79937410 MsG0180004583.01.T01:three_prime_UTR 45.0%
CAACGCAGATCCTTAAACCA+AGG + Chr1:79937581-79937600 MsG0180004583.01.T01:three_prime_UTR 45.0%
CAGAAAACAAGAGCCACCTT+TGG + Chr1:79936346-79936365 MsG0180004583.01.T01:three_prime_UTR 45.0%
CATGAGAATTCGTCGGATCT+GGG + Chr1:79934717-79934736 MsG0180004583.01.T01:CDS 45.0%
CTAAGTCTACTAGCCAAAGG+TGG - Chr1:79936362-79936381 None:intergenic 45.0%
CTCTATTCAGCTTCTCGGTA+TGG + Chr1:79934991-79935010 MsG0180004583.01.T01:intron 45.0%
CTGCTAAGTCTACTAGCCAA+AGG - Chr1:79936365-79936384 None:intergenic 45.0%
CTTCTTCTTCCGAAACACCA+TGG + Chr1:79934330-79934349 MsG0180004583.01.T01:exon 45.0%
CTTGTTGAAGCTCGTGTTCA+TGG + Chr1:79936072-79936091 MsG0180004583.01.T01:three_prime_UTR 45.0%
CTTTGGCTAGTAGACTTAGC+AGG + Chr1:79936363-79936382 MsG0180004583.01.T01:three_prime_UTR 45.0%
GACTCACTTCTTAGTAGGCT+GGG - Chr1:79935732-79935751 None:intergenic 45.0%
GAGATAAAGCAAGCTGCAGA+AGG + Chr1:79936030-79936049 MsG0180004583.01.T01:three_prime_UTR 45.0%
GATCCTTAAACCAAGGAGGA+GGG + Chr1:79937588-79937607 MsG0180004583.01.T01:three_prime_UTR 45.0%
GCTTGTAAAGGATTCAGTCG+CGG - Chr1:79934957-79934976 None:intergenic 45.0%
GGAAACAGAGTCAGATCTGT+TGG + Chr1:79936126-79936145 MsG0180004583.01.T01:three_prime_UTR 45.0%
GGTCTCTATTGCAGTTTAGG+TGG - Chr1:79938061-79938080 None:intergenic 45.0%
GTAGTTAACACCCTCTCTTC+CGG - Chr1:79935590-79935609 None:intergenic 45.0%
GTCTTCAAAGACCAAGAGCA+GGG + Chr1:79937525-79937544 MsG0180004583.01.T01:three_prime_UTR 45.0%
GTGGCAAAATTCAGTGAACC+AGG - Chr1:79936818-79936837 None:intergenic 45.0%
GTGGGAAAAACTGAAGCTGA+GGG + Chr1:79936396-79936415 MsG0180004583.01.T01:three_prime_UTR 45.0%
TAGGGGCAGCAGTAAGTTTA+TGG + Chr1:79937802-79937821 MsG0180004583.01.T01:three_prime_UTR 45.0%
TCATGAGAATTCGTCGGATC+TGG + Chr1:79934716-79934735 MsG0180004583.01.T01:CDS 45.0%
TGATTGTACAGGTGGTCTCA+TGG - Chr1:79937560-79937579 None:intergenic 45.0%
TGTGGGAAAAACTGAAGCTG+AGG + Chr1:79936395-79936414 MsG0180004583.01.T01:three_prime_UTR 45.0%
TTGGTCTAATCGCTGGCAAT+GGG - Chr1:79937755-79937774 MsG0180004582.01.T01:CDS 45.0%
TTGTCCTGGGATTGAAATGC+AGG + Chr1:79936731-79936750 MsG0180004583.01.T01:intron 45.0%
TTGTTGCGAGTAACAGTCGT+CGG + Chr1:79936305-79936324 MsG0180004583.01.T01:intron 45.0%
! CACGCACGCATTGATAAACA+AGG - Chr1:79938082-79938101 None:intergenic 45.0%
! CTCTTTGGTGGTATAGGAGA+TGG - Chr1:79937438-79937457 None:intergenic 45.0%
! GGCGGCTTTAATTGAAACTC+AGG + Chr1:79935180-79935199 MsG0180004583.01.T01:intron 45.0%
! GGTGTTGTATCAACCGATGT+TGG - Chr1:79937774-79937793 MsG0180004582.01.T01:CDS 45.0%
! TGATGGGTGTATCTCTTTGG+TGG - Chr1:79937450-79937469 None:intergenic 45.0%
! TGCGTTGTTGATTGTACAGG+TGG - Chr1:79937568-79937587 None:intergenic 45.0%
! TGTGGGATGCTTTGGATGAA+AGG - Chr1:79936487-79936506 None:intergenic 45.0%
! TTTGGTGGTATAGGAGATGG+TGG - Chr1:79937435-79937454 None:intergenic 45.0%
! TTTTCATCTCTCAGCCTGAG+AGG - Chr1:79938011-79938030 None:intergenic 45.0%
!! AGATGGTGGAGGCAAGAAAT+TGG - Chr1:79937421-79937440 None:intergenic 45.0%
!! AGGGGCATTCTCAGATTTGA+AGG - Chr1:79937387-79937406 None:intergenic 45.0%
!! TTAGTTTGTGGAGTCCTCTC+AGG + Chr1:79937994-79938013 MsG0180004583.01.T01:three_prime_UTR 45.0%
!! TTCACTCCTGTTTGGGTTGT+TGG + Chr1:79938249-79938268 MsG0180004583.01.T01:three_prime_UTR 45.0%
!! TTTCAGATGTTGGCTCAGGA+CGG - Chr1:79937630-79937649 None:intergenic 45.0%
!!! CAAAGGTGGCTCTTGTTTTC+TGG - Chr1:79936348-79936367 None:intergenic 45.0%
AAGCATCCCACATCCCTTAC+AGG + Chr1:79936495-79936514 MsG0180004583.01.T01:three_prime_UTR 50.0%
ACACGAGCTTCAACAAGTCC+AGG - Chr1:79936069-79936088 None:intergenic 50.0%
AGACCCTCCTCCTTGGTTTA+AGG - Chr1:79937594-79937613 None:intergenic 50.0%
AGGTCTACTTGTTTGCGAGC+TGG - Chr1:79936866-79936885 None:intergenic 50.0%
CACCTCCTTGTGCATGTACT+GGG - Chr1:79937833-79937852 MsG0180004582.01.T01:CDS 50.0%
CACGAGCTTCAACAAGTCCA+GGG - Chr1:79936068-79936087 None:intergenic 50.0%
CACGGCAAACCTTGAAGTTG+AGG - Chr1:79937674-79937693 MsG0180004582.01.T01:CDS 50.0%
CACTCCGTACCTCAACTTCA+AGG + Chr1:79937662-79937681 MsG0180004583.01.T01:three_prime_UTR 50.0%
CAGTACATGCACAAGGAGGT+GGG + Chr1:79937832-79937851 MsG0180004583.01.T01:three_prime_UTR 50.0%
CGCAGATCCTTAAACCAAGG+AGG + Chr1:79937584-79937603 MsG0180004583.01.T01:three_prime_UTR 50.0%
CTCAACTTCAAGGTTTGCCG+TGG + Chr1:79937672-79937691 MsG0180004583.01.T01:three_prime_UTR 50.0%
CTGCTGATACACTGCTTCCA+CGG - Chr1:79937692-79937711 MsG0180004582.01.T01:CDS 50.0%
CTTGAAGTTGAGGTACGGAG+TGG - Chr1:79937664-79937683 MsG0180004582.01.T01:CDS 50.0%
GCAGTGTATCAGCAGCCATA+AGG + Chr1:79937697-79937716 MsG0180004583.01.T01:three_prime_UTR 50.0%
GCCAGCGATTAGACCAACAT+CGG + Chr1:79937758-79937777 MsG0180004583.01.T01:three_prime_UTR 50.0%
GCTAAGCTCATTAGCAGAGG+TGG - Chr1:79936154-79936173 None:intergenic 50.0%
GCTCGCAAACAAGTAGACCT+CGG + Chr1:79936866-79936885 MsG0180004583.01.T01:three_prime_UTR 50.0%
GCTGCTAAGCTCATTAGCAG+AGG - Chr1:79936157-79936176 None:intergenic 50.0%
GGACTCACTTCTTAGTAGGC+TGG - Chr1:79935733-79935752 None:intergenic 50.0%
GGCAAGAGTGATGATTTCGG+TGG - Chr1:79937940-79937959 MsG0180004582.01.T01:CDS 50.0%
GGTCTACTTGTTTGCGAGCT+GGG - Chr1:79936865-79936884 None:intergenic 50.0%
GGTCTTCAAAGACCAAGAGC+AGG + Chr1:79937524-79937543 MsG0180004583.01.T01:three_prime_UTR 50.0%
GTAAGGGATGTGGGATGCTT+TGG - Chr1:79936495-79936514 None:intergenic 50.0%
GTAGCTGCGATTGCATTGCA+CGG + Chr1:79937858-79937877 MsG0180004583.01.T01:three_prime_UTR 50.0%
GTGTGGGAATTGCTCAAGAC+TGG + Chr1:79936105-79936124 MsG0180004583.01.T01:three_prime_UTR 50.0%
TAAGTCCAAGCTCAGCGCTT+AGG + Chr1:79936786-79936805 MsG0180004583.01.T01:three_prime_UTR 50.0%
TACAGGTGGTCTCATGGCAA+TGG - Chr1:79937554-79937573 None:intergenic 50.0%
TACCAGAGGGGATAGCGTTT+GGG - Chr1:79934524-79934543 None:intergenic 50.0%
TCCTCCTGCATTTCAATCCC+AGG - Chr1:79936738-79936757 None:intergenic 50.0%
TCCTGGGATTGAAATGCAGG+AGG + Chr1:79936734-79936753 MsG0180004583.01.T01:intron 50.0%
TGGTCTAATCGCTGGCAATG+GGG - Chr1:79937754-79937773 MsG0180004582.01.T01:CDS 50.0%
TGTACTTGAACAGCTCACCG+AGG - Chr1:79936886-79936905 None:intergenic 50.0%
TTACCAGAGGGGATAGCGTT+TGG - Chr1:79934525-79934544 None:intergenic 50.0%
! AATTTTGCCACTCGTGTCCG+TGG + Chr1:79936827-79936846 MsG0180004583.01.T01:three_prime_UTR 50.0%
! ACCGATGTTGGTCTAATCGC+TGG - Chr1:79937762-79937781 MsG0180004582.01.T01:CDS 50.0%
! CGGCTTCTTTGAAGAGTCTG+AGG - Chr1:79935318-79935337 None:intergenic 50.0%
! GTTGGTCTAATCGCTGGCAA+TGG - Chr1:79937756-79937775 MsG0180004582.01.T01:CDS 50.0%
AATGGGGAACACCGGAAGAG+AGG + Chr1:79935576-79935595 MsG0180004583.01.T01:intron 55.0%
ACATGCACAAGGAGGTGGGA+TGG + Chr1:79937836-79937855 MsG0180004583.01.T01:three_prime_UTR 55.0%
ACCAGAGGGGATAGCGTTTG+GGG - Chr1:79934523-79934542 None:intergenic 55.0%
ACTGCTGCCCCTAGTGACAT+TGG - Chr1:79937795-79937814 MsG0180004582.01.T01:CDS 55.0%
AGCAGCCATAAGGAGCCAGA+GGG + Chr1:79937707-79937726 MsG0180004583.01.T01:three_prime_UTR 55.0%
AGCTTAGCAGCCGTTCCCAT+TGG + Chr1:79936166-79936185 MsG0180004583.01.T01:three_prime_UTR 55.0%
ATGAATCCTCTGAGCGCAGG+CGG + Chr1:79935162-79935181 MsG0180004583.01.T01:intron 55.0%
ATGGGGAACACCGGAAGAGA+GGG + Chr1:79935577-79935596 MsG0180004583.01.T01:intron 55.0%
ATTGTGACAGGTACGGGACC+TGG + Chr1:79937222-79937241 MsG0180004583.01.T01:intron 55.0%
CCACCTCCTTGTGCATGTAC+TGG - Chr1:79937834-79937853 MsG0180004582.01.T01:CDS 55.0%
CCAGTACATGCACAAGGAGG+TGG + Chr1:79937831-79937850 MsG0180004583.01.T01:three_prime_UTR 55.0%
CGTGTCCGTGGAATTGAGAG+CGG + Chr1:79936839-79936858 MsG0180004583.01.T01:three_prime_UTR 55.0%
CTCAATTCCACGGACACGAG+TGG - Chr1:79936837-79936856 None:intergenic 55.0%
CTCAGGACGGAGTGTAGCAA+TGG - Chr1:79937617-79937636 None:intergenic 55.0%
GAAGGGACACAAGAAGTCCC+TGG + Chr1:79936048-79936067 MsG0180004583.01.T01:three_prime_UTR 55.0%
GAAGTTGAGGTACGGAGTGG+AGG - Chr1:79937661-79937680 MsG0180004582.01.T01:CDS 55.0%
GCAGTCCCAGTACATGCACA+AGG + Chr1:79937825-79937844 MsG0180004583.01.T01:three_prime_UTR 55.0%
GCGCTGAGCTTGGACTTACT+TGG - Chr1:79936784-79936803 None:intergenic 55.0%
GCTTACGGACAAACCGGAAC+TGG + Chr1:79935541-79935560 MsG0180004583.01.T01:CDS 55.0%
GTCCCAGTACATGCACAAGG+AGG + Chr1:79937828-79937847 MsG0180004583.01.T01:three_prime_UTR 55.0%
TGGATGAATCCTCTGAGCGC+AGG + Chr1:79935159-79935178 MsG0180004583.01.T01:intron 55.0%
TTAGCAGGTAGCGAGCGTGT+GGG + Chr1:79936378-79936397 MsG0180004583.01.T01:three_prime_UTR 55.0%
! GGTGGTATAGGAGATGGTGG+AGG - Chr1:79937432-79937451 None:intergenic 55.0%
!! TCTCTCCTAAGCGCTGAGCT+TGG - Chr1:79936794-79936813 None:intergenic 55.0%
CAGCAGCCATAAGGAGCCAG+AGG + Chr1:79937706-79937725 MsG0180004583.01.T01:three_prime_UTR 60.0%
CCATAAGGAGCCAGAGGGGT+CGG + Chr1:79937712-79937731 MsG0180004583.01.T01:three_prime_UTR 60.0%
CTGGGCCGCTCTCAATTCCA+CGG - Chr1:79936847-79936866 None:intergenic 60.0%
CTTAGCAGGTAGCGAGCGTG+TGG + Chr1:79936377-79936396 MsG0180004583.01.T01:three_prime_UTR 60.0%
GCAATGGAGACCCTCCTCCT+TGG - Chr1:79937601-79937620 None:intergenic 60.0%
GCAGCCATAAGGAGCCAGAG+GGG + Chr1:79937708-79937727 MsG0180004583.01.T01:three_prime_UTR 60.0%
GGCAATGGAAGCCCTGCTCT+TGG - Chr1:79937539-79937558 None:intergenic 60.0%
TCAGCGCTTAGGAGAGACCC+TGG + Chr1:79936797-79936816 MsG0180004583.01.T01:three_prime_UTR 60.0%
TCCCCAAACGCTATCCCCTC+TGG + Chr1:79934519-79934538 MsG0180004583.01.T01:CDS 60.0%
TTAAAGCCGCCTGCGCTCAG+AGG - Chr1:79935171-79935190 None:intergenic 60.0%
! CCGACCCCTCTGGCTCCTTA+TGG - Chr1:79937715-79937734 MsG0180004582.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 79934135 79938270 79934135 ID=MsG0180004583.01;Name=MsG0180004583.01
Chr1 mRNA 79934135 79938270 79934135 ID=MsG0180004583.01.T01;Parent=MsG0180004583.01;Name=MsG0180004583.01.T01;_AED=0.45;_eAED=0.45;_QI=214|0.33|0.5|1|0.88|0.8|10|1561|193
Chr1 exon 79934135 79934361 79934135 ID=MsG0180004583.01.T01:exon:13206;Parent=MsG0180004583.01.T01
Chr1 exon 79934448 79934540 79934448 ID=MsG0180004583.01.T01:exon:13207;Parent=MsG0180004583.01.T01
Chr1 exon 79934664 79934791 79934664 ID=MsG0180004583.01.T01:exon:13208;Parent=MsG0180004583.01.T01
Chr1 exon 79934911 79935007 79934911 ID=MsG0180004583.01.T01:exon:13209;Parent=MsG0180004583.01.T01
Chr1 exon 79935216 79935376 79935216 ID=MsG0180004583.01.T01:exon:13210;Parent=MsG0180004583.01.T01
Chr1 exon 79935474 79935562 79935474 ID=MsG0180004583.01.T01:exon:13211;Parent=MsG0180004583.01.T01
Chr1 exon 79936026 79936191 79936026 ID=MsG0180004583.01.T01:exon:13212;Parent=MsG0180004583.01.T01
Chr1 exon 79936321 79936516 79936321 ID=MsG0180004583.01.T01:exon:13213;Parent=MsG0180004583.01.T01
Chr1 exon 79936753 79936913 79936753 ID=MsG0180004583.01.T01:exon:13214;Parent=MsG0180004583.01.T01
Chr1 exon 79937232 79938270 79937232 ID=MsG0180004583.01.T01:exon:13215;Parent=MsG0180004583.01.T01
Chr1 five_prime_UTR 79934135 79934348 79934135 ID=MsG0180004583.01.T01:five_prime_utr;Parent=MsG0180004583.01.T01
Chr1 CDS 79934349 79934361 79934349 ID=MsG0180004583.01.T01:cds;Parent=MsG0180004583.01.T01
Chr1 CDS 79934448 79934540 79934448 ID=MsG0180004583.01.T01:cds;Parent=MsG0180004583.01.T01
Chr1 CDS 79934664 79934791 79934664 ID=MsG0180004583.01.T01:cds;Parent=MsG0180004583.01.T01
Chr1 CDS 79934911 79935007 79934911 ID=MsG0180004583.01.T01:cds;Parent=MsG0180004583.01.T01
Chr1 CDS 79935216 79935376 79935216 ID=MsG0180004583.01.T01:cds;Parent=MsG0180004583.01.T01
Chr1 CDS 79935474 79935562 79935474 ID=MsG0180004583.01.T01:cds;Parent=MsG0180004583.01.T01
Chr1 CDS 79936026 79936026 79936026 ID=MsG0180004583.01.T01:cds;Parent=MsG0180004583.01.T01
Chr1 three_prime_UTR 79936027 79936191 79936027 ID=MsG0180004583.01.T01:three_prime_utr;Parent=MsG0180004583.01.T01
Chr1 three_prime_UTR 79936321 79936516 79936321 ID=MsG0180004583.01.T01:three_prime_utr;Parent=MsG0180004583.01.T01
Chr1 three_prime_UTR 79936753 79936913 79936753 ID=MsG0180004583.01.T01:three_prime_utr;Parent=MsG0180004583.01.T01
Chr1 three_prime_UTR 79937232 79938270 79937232 ID=MsG0180004583.01.T01:three_prime_utr;Parent=MsG0180004583.01.T01
Gene Sequence

>MsG0180004583.01.T01

ATGGAAATGAACGATCAAAACGTTCAAATTCAAATGCTCGCTGAGAAATTTCAACTCTTCGTACGTGATTGCGAACTCAAGCAATCCCCAAACGCTATCCCCTCTGAAAGTAATGAAAACTCTGATTCGGTGGATGAAAACAGTATGTCTAATGGAATTCATGAGAATTCGTCGGATCTGGGTCATACGCTTCCCATTCTGAAGAAAGTCTTTGATTTGAGTACCAAAGTTCAGGATTTGAAGAAGGAGCATTTAGCGTTATCTGATCATGTGAAAACCGCGACTGAATCCTTTACAAGCCTCGAAGTTTTGAACTCTATTCAGCTTCTCGGTAATGTCAGATGCAGACCTTTCAGTGAAAGTGAAAGTGAAAATGGGTTTACATTGTTGTCAATTTCGAATCCACTTGAGAATGAGCTTCAAGTCATCTCCTCAGACTCTTCAAAGAAGCCGTTTAAATTTGATCAGTATTTAAGCCAGAAGATAACCAAGAGGCTGTTTTTTTCTCAACTAAACCTATTGCTACATCAGTATTGGATGGCTTTAATGTCTGTATTTTGCTTACGGACAAACCGGAACTGA

Protein sequence

>MsG0180004583.01.T01

MEMNDQNVQIQMLAEKFQLFVRDCELKQSPNAIPSESNENSDSVDENSMSNGIHENSSDLGHTLPILKKVFDLSTKVQDLKKEHLALSDHVKTATESFTSLEVLNSIQLLGNVRCRPFSESESENGFTLLSISNPLENELQVISSDSSKKPFKFDQYLSQKITKRLFFSQLNLLLHQYWMALMSVFCLRTNRN*