Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317290 | RHN56580.1 | 91.494 | 482 | 41 | 0 | 1 | 482 | 1 | 482 | 0.0 | 923 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317290 | sp|Q9SY66|FRS11_ARATH | 47.818 | 550 | 273 | 7 | 30 | 572 | 11 | 553 | 5.78e-180 | 531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0317290 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002670 | Msa0317290 | 0.805006 | 1.643626e-49 | -8.615850e-47 |
| Msa0028700 | Msa0317290 | 0.864786 | 9.461091e-65 | -8.615850e-47 |
| Msa0032330 | Msa0317290 | 0.930750 | 1.038129e-93 | -8.615850e-47 |
| Msa0062860 | Msa0317290 | 0.804822 | 1.796001e-49 | -8.615850e-47 |
| Msa0115270 | Msa0317290 | 0.808740 | 2.669816e-50 | -8.615850e-47 |
| Msa0178960 | Msa0317290 | 0.843720 | 1.177588e-58 | -8.615850e-47 |
| Msa0178970 | Msa0317290 | 0.826393 | 2.781224e-54 | -8.615850e-47 |
| Msa0180500 | Msa0317290 | 0.831407 | 1.698782e-55 | -8.615850e-47 |
| Msa0251640 | Msa0317290 | 0.800168 | 1.635330e-48 | -8.615850e-47 |
| Msa0269810 | Msa0317290 | 0.800769 | 1.233731e-48 | -8.615850e-47 |
| Msa0278110 | Msa0317290 | 0.816916 | 4.321464e-52 | -8.615850e-47 |
| Msa0279790 | Msa0317290 | 0.801714 | 7.904346e-49 | -8.615850e-47 |
| Msa0317290 | Msa0350990 | 0.810353 | 1.202570e-50 | -8.615850e-47 |
| Msa0317290 | Msa0351030 | 0.811115 | 8.228947e-51 | -8.615850e-47 |
| Msa0317290 | Msa0351100 | 0.805717 | 1.166823e-49 | -8.615850e-47 |
| Msa0317290 | Msa0416650 | 0.813888 | 2.037872e-51 | -8.615850e-47 |
| Msa0317290 | Msa0424320 | 0.834922 | 2.264450e-56 | -8.615850e-47 |
| Msa0317290 | Msa0512750 | 0.810158 | 1.324479e-50 | -8.615850e-47 |
| Msa0317290 | Msa0516750 | 0.965342 | 1.758990e-124 | -8.615850e-47 |
| Msa0317290 | Msa0523940 | 0.840723 | 7.321115e-58 | -8.615850e-47 |
| Msa0317290 | Msa0585230 | 0.808736 | 2.675194e-50 | -8.615850e-47 |
| Msa0317290 | Msa0615740 | 0.840193 | 1.007668e-57 | -8.615850e-47 |
| Msa0317290 | Msa0661650 | 0.804161 | 2.466817e-49 | -8.615850e-47 |
| Msa0317290 | Msa0672690 | 0.808332 | 3.262647e-50 | -8.615850e-47 |
| Msa0317290 | Msa0701010 | 0.841426 | 4.786879e-58 | -8.615850e-47 |
| Msa0317290 | Msa0731940 | 0.814489 | 1.501334e-51 | -8.615850e-47 |
| Msa0317290 | Msa0738500 | 0.954496 | 2.596644e-112 | -8.615850e-47 |
| Msa0317290 | Msa0768290 | 0.816920 | 4.311201e-52 | -8.615850e-47 |
| Msa0317290 | Msa0768370 | 0.832811 | 7.640215e-56 | -8.615850e-47 |
| Msa0317290 | Msa0824590 | 0.801038 | 1.087156e-48 | -8.615850e-47 |
| Msa0317290 | Msa0828940 | 0.802914 | 4.474891e-49 | -8.615850e-47 |
| Msa0317290 | Msa0844490 | 0.809848 | 1.544605e-50 | -8.615850e-47 |
| Msa0317290 | Msa0849030 | 0.815348 | 9.679221e-52 | -8.615850e-47 |
| Msa0317290 | Msa0864070 | 0.808465 | 3.056869e-50 | -8.615850e-47 |
| Msa0317290 | Msa0877250 | 0.854679 | 1.048572e-61 | -8.615850e-47 |
| Msa0317290 | Msa0899430 | 0.815674 | 8.189779e-52 | -8.615850e-47 |
| Msa0317290 | Msa0899450 | 0.806433 | 8.247768e-50 | -8.615850e-47 |
| Msa0317290 | Msa0917880 | 0.841915 | 3.556489e-58 | -8.615850e-47 |
| Msa0317290 | Msa0936300 | 0.807408 | 5.129449e-50 | -8.615850e-47 |
| Msa0317290 | Msa0953120 | 0.808245 | 3.404916e-50 | -8.615850e-47 |
| Msa0317290 | Msa0958550 | 0.826005 | 3.439829e-54 | -8.615850e-47 |
| Msa0317290 | Msa0966750 | 0.819269 | 1.269321e-52 | -8.615850e-47 |
| Msa0317290 | Msa0969810 | 0.803446 | 3.472046e-49 | -8.615850e-47 |
| Msa0317290 | Msa0980090 | 0.873189 | 1.782433e-67 | -8.615850e-47 |
| Msa0317290 | Msa1000900 | 0.809368 | 1.958767e-50 | -8.615850e-47 |
| Msa0317290 | Msa1009070 | 0.806022 | 1.006589e-49 | -8.615850e-47 |
| Msa0317290 | Msa1014540 | 0.803342 | 3.649832e-49 | -8.615850e-47 |
| Msa0317290 | Msa1075540 | 0.800197 | 1.613541e-48 | -8.615850e-47 |
| Msa0317290 | Msa1082580 | 0.814023 | 1.902675e-51 | -8.615850e-47 |
| Msa0317290 | Msa1085740 | 0.819745 | 9.884790e-53 | -8.615850e-47 |
| Msa0317290 | Msa1139680 | 0.807647 | 4.564930e-50 | -8.615850e-47 |
| Msa0317290 | Msa1156020 | 0.884458 | 1.885586e-71 | -8.615850e-47 |
| Msa0317290 | Msa1238930 | 0.808256 | 3.386318e-50 | -8.615850e-47 |
| Msa0317290 | Msa1239530 | 0.811068 | 8.421525e-51 | -8.615850e-47 |
| Msa0317290 | Msa1244250 | 0.820853 | 5.505765e-53 | -8.615850e-47 |
| Msa0317290 | Msa1249490 | 0.801142 | 1.035160e-48 | -8.615850e-47 |
| Msa0317290 | Msa1277660 | 0.804219 | 2.399472e-49 | -8.615850e-47 |
| Msa0317290 | Msa1284680 | 0.800956 | 1.129701e-48 | -8.615850e-47 |
| Msa0317290 | Msa1306760 | 0.804046 | 2.606295e-49 | -8.615850e-47 |
| Msa0317290 | Msa1366810 | 0.827839 | 1.253497e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317290 | MtrunA17_Chr5g0431001 | 91.494 | 482 | 41 | 0 | 1 | 482 | 1 | 482 | 0.0 | 923 |
| Msa0317290 | MtrunA17_Chr1g0198761 | 61.456 | 742 | 210 | 8 | 31 | 697 | 16 | 756 | 0.0 | 900 |
| Msa0317290 | MtrunA17_Chr2g0276841 | 49.318 | 513 | 254 | 3 | 60 | 572 | 69 | 575 | 0.0 | 541 |
| Msa0317290 | MtrunA17_Chr2g0294841 | 47.184 | 515 | 264 | 3 | 60 | 571 | 44 | 553 | 1.67e-169 | 504 |
| Msa0317290 | MtrunA17_Chr2g0290391 | 45.785 | 522 | 260 | 4 | 61 | 572 | 51 | 559 | 3.57e-163 | 486 |
| Msa0317290 | MtrunA17_Chr1g0202341 | 30.037 | 536 | 349 | 12 | 13 | 544 | 10 | 523 | 3.97e-71 | 244 |
| Msa0317290 | MtrunA17_Chr5g0448761 | 29.502 | 522 | 349 | 8 | 50 | 565 | 52 | 560 | 9.15e-67 | 234 |
| Msa0317290 | MtrunA17_Chr2g0296781 | 30.019 | 513 | 325 | 11 | 67 | 568 | 3 | 492 | 2.39e-62 | 221 |
| Msa0317290 | MtrunA17_Chr3g0080351 | 31.590 | 497 | 293 | 17 | 61 | 544 | 76 | 538 | 7.38e-62 | 221 |
| Msa0317290 | MtrunA17_Chr2g0287651 | 27.581 | 620 | 404 | 15 | 45 | 652 | 60 | 646 | 5.13e-61 | 219 |
| Msa0317290 | MtrunA17_Chr1g0203051 | 27.239 | 547 | 349 | 14 | 28 | 559 | 52 | 564 | 5.11e-59 | 210 |
| Msa0317290 | MtrunA17_Chr6g0477261 | 34.551 | 356 | 222 | 5 | 194 | 544 | 4 | 353 | 1.39e-56 | 204 |
| Msa0317290 | MtrunA17_Chr2g0329031 | 27.519 | 516 | 323 | 12 | 67 | 567 | 20 | 499 | 4.37e-56 | 204 |
| Msa0317290 | MtrunA17_Chr5g0441581 | 29.909 | 438 | 285 | 9 | 141 | 572 | 102 | 523 | 8.30e-56 | 202 |
| Msa0317290 | MtrunA17_Chr8g0363841 | 28.516 | 519 | 340 | 13 | 62 | 569 | 18 | 516 | 8.69e-56 | 202 |
| Msa0317290 | MtrunA17_Chr6g0458391 | 27.902 | 491 | 320 | 9 | 58 | 545 | 222 | 681 | 1.65e-53 | 197 |
| Msa0317290 | MtrunA17_Chr1g0207551 | 29.480 | 519 | 333 | 13 | 61 | 567 | 34 | 531 | 3.26e-53 | 196 |
| Msa0317290 | MtrunA17_Chr5g0430921 | 96.471 | 85 | 3 | 0 | 607 | 691 | 1 | 85 | 2.00e-51 | 172 |
| Msa0317290 | MtrunA17_Chr3g0082121 | 29.713 | 488 | 300 | 16 | 60 | 534 | 42 | 499 | 2.47e-50 | 187 |
| Msa0317290 | MtrunA17_Chr2g0287061 | 27.626 | 514 | 299 | 13 | 40 | 544 | 165 | 614 | 1.53e-48 | 183 |
| Msa0317290 | MtrunA17_Chr1g0196541 | 26.884 | 491 | 317 | 11 | 67 | 544 | 3 | 464 | 5.92e-48 | 180 |
| Msa0317290 | MtrunA17_Chr3g0081281 | 83.696 | 92 | 15 | 0 | 210 | 301 | 2 | 93 | 1.03e-46 | 160 |
| Msa0317290 | MtrunA17_Chr1g0203721 | 25.577 | 520 | 353 | 9 | 64 | 570 | 66 | 564 | 6.15e-46 | 176 |
| Msa0317290 | MtrunA17_Chr2g0324011 | 25.794 | 504 | 328 | 10 | 61 | 546 | 10 | 485 | 1.55e-43 | 166 |
| Msa0317290 | MtrunA17_Chr2g0291581 | 26.062 | 518 | 342 | 12 | 38 | 545 | 43 | 529 | 2.13e-43 | 166 |
| Msa0317290 | MtrunA17_Chr5g0440451 | 23.875 | 511 | 343 | 9 | 61 | 552 | 43 | 526 | 8.22e-43 | 166 |
| Msa0317290 | MtrunA17_Chr5g0448511 | 31.650 | 297 | 201 | 2 | 249 | 544 | 16 | 311 | 1.15e-42 | 162 |
| Msa0317290 | MtrunA17_Chr2g0291591 | 24.120 | 568 | 374 | 14 | 20 | 565 | 25 | 557 | 4.50e-38 | 149 |
| Msa0317290 | MtrunA17_Chr3g0118611 | 27.635 | 351 | 247 | 5 | 203 | 552 | 79 | 423 | 5.26e-38 | 151 |
| Msa0317290 | MtrunA17_Chr1g0164591 | 34.314 | 204 | 132 | 2 | 262 | 464 | 106 | 308 | 1.99e-35 | 137 |
| Msa0317290 | MtrunA17_Chr7g0258861 | 25.338 | 296 | 195 | 6 | 61 | 347 | 10 | 288 | 8.11e-22 | 96.7 |
| Msa0317290 | MtrunA17_Chr2g0308841 | 25.301 | 166 | 102 | 2 | 418 | 583 | 14 | 157 | 6.54e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317290 | AT1G10240.2 | 47.818 | 550 | 273 | 7 | 30 | 572 | 11 | 553 | 0.0 | 531 |
| Msa0317290 | AT1G10240.1 | 47.818 | 550 | 273 | 7 | 30 | 572 | 11 | 553 | 0.0 | 531 |
| Msa0317290 | AT5G28530.3 | 42.364 | 550 | 292 | 4 | 31 | 570 | 27 | 561 | 9.51e-159 | 474 |
| Msa0317290 | AT5G28530.2 | 42.364 | 550 | 292 | 4 | 31 | 570 | 27 | 561 | 9.51e-159 | 474 |
| Msa0317290 | AT5G28530.1 | 42.182 | 550 | 297 | 4 | 31 | 570 | 27 | 565 | 3.84e-158 | 473 |
| Msa0317290 | AT5G28530.5 | 37.963 | 540 | 267 | 7 | 31 | 570 | 27 | 498 | 1.05e-123 | 382 |
| Msa0317290 | AT5G28530.4 | 37.778 | 540 | 272 | 7 | 31 | 570 | 27 | 502 | 3.48e-123 | 380 |
| Msa0317290 | AT4G38180.1 | 30.059 | 509 | 342 | 6 | 61 | 566 | 73 | 570 | 2.06e-67 | 237 |
| Msa0317290 | AT4G15090.1 | 30.204 | 490 | 320 | 10 | 61 | 544 | 51 | 524 | 5.96e-67 | 236 |
| Msa0317290 | AT4G15090.5 | 30.204 | 490 | 320 | 10 | 61 | 544 | 51 | 524 | 5.96e-67 | 236 |
| Msa0317290 | AT4G15090.3 | 30.204 | 490 | 320 | 10 | 61 | 544 | 51 | 524 | 5.96e-67 | 236 |
| Msa0317290 | AT4G15090.2 | 30.204 | 490 | 320 | 10 | 61 | 544 | 51 | 524 | 5.96e-67 | 236 |
| Msa0317290 | AT4G15090.4 | 30.204 | 490 | 320 | 10 | 61 | 544 | 51 | 524 | 5.96e-67 | 236 |
| Msa0317290 | AT3G22170.2 | 27.539 | 512 | 322 | 16 | 49 | 544 | 55 | 533 | 2.54e-53 | 197 |
| Msa0317290 | AT3G22170.1 | 27.539 | 512 | 322 | 16 | 49 | 544 | 55 | 533 | 2.54e-53 | 197 |
| Msa0317290 | AT1G76320.3 | 27.664 | 488 | 314 | 12 | 67 | 544 | 3 | 461 | 4.79e-51 | 189 |
| Msa0317290 | AT1G76320.2 | 27.664 | 488 | 314 | 12 | 67 | 544 | 3 | 461 | 5.50e-51 | 189 |
| Msa0317290 | AT1G76320.1 | 27.664 | 488 | 314 | 12 | 67 | 544 | 3 | 461 | 5.90e-51 | 189 |
| Msa0317290 | AT1G76320.4 | 27.664 | 488 | 314 | 12 | 67 | 544 | 3 | 461 | 5.90e-51 | 189 |
| Msa0317290 | AT3G06250.2 | 26.000 | 500 | 305 | 12 | 61 | 555 | 190 | 629 | 1.55e-46 | 177 |
| Msa0317290 | AT3G06250.1 | 26.000 | 500 | 305 | 12 | 61 | 555 | 190 | 629 | 1.55e-46 | 177 |
| Msa0317290 | AT3G06250.3 | 26.000 | 500 | 305 | 12 | 61 | 555 | 190 | 629 | 1.55e-46 | 177 |
| Msa0317290 | AT5G18960.2 | 25.919 | 517 | 315 | 12 | 47 | 555 | 197 | 653 | 4.59e-46 | 176 |
| Msa0317290 | AT5G18960.1 | 25.919 | 517 | 315 | 12 | 47 | 555 | 197 | 653 | 4.59e-46 | 176 |
| Msa0317290 | AT2G27110.2 | 25.309 | 486 | 320 | 12 | 61 | 544 | 49 | 493 | 1.64e-39 | 156 |
| Msa0317290 | AT2G27110.1 | 25.309 | 486 | 320 | 12 | 61 | 544 | 49 | 493 | 1.64e-39 | 156 |
| Msa0317290 | AT2G32250.5 | 27.586 | 290 | 208 | 2 | 256 | 544 | 180 | 468 | 2.76e-39 | 155 |
| Msa0317290 | AT2G32250.2 | 27.586 | 290 | 208 | 2 | 256 | 544 | 180 | 468 | 3.74e-39 | 155 |
| Msa0317290 | AT2G32250.4 | 27.586 | 290 | 208 | 2 | 256 | 544 | 180 | 468 | 3.74e-39 | 155 |
| Msa0317290 | AT2G32250.6 | 27.586 | 290 | 208 | 2 | 256 | 544 | 180 | 468 | 3.94e-39 | 155 |
| Msa0317290 | AT2G32250.1 | 27.586 | 290 | 208 | 2 | 256 | 544 | 180 | 468 | 3.94e-39 | 155 |
| Msa0317290 | AT2G32250.3 | 27.586 | 290 | 208 | 2 | 256 | 544 | 180 | 468 | 3.94e-39 | 155 |
| Msa0317290 | AT2G32250.7 | 27.586 | 290 | 208 | 2 | 256 | 544 | 139 | 427 | 4.20e-39 | 155 |
| Msa0317290 | AT2G32250.8 | 27.586 | 290 | 208 | 2 | 256 | 544 | 139 | 427 | 4.28e-39 | 155 |
| Msa0317290 | AT4G19990.3 | 26.640 | 503 | 295 | 14 | 63 | 544 | 23 | 472 | 3.61e-38 | 152 |
| Msa0317290 | AT4G19990.4 | 26.640 | 503 | 295 | 14 | 63 | 544 | 23 | 472 | 3.61e-38 | 152 |
| Msa0317290 | AT4G19990.5 | 26.640 | 503 | 295 | 14 | 63 | 544 | 23 | 472 | 3.86e-38 | 152 |
| Msa0317290 | AT4G19990.6 | 26.640 | 503 | 295 | 14 | 63 | 544 | 23 | 472 | 4.17e-38 | 152 |
| Msa0317290 | AT4G19990.2 | 26.640 | 503 | 295 | 14 | 63 | 544 | 23 | 472 | 4.17e-38 | 152 |
| Msa0317290 | AT4G19990.7 | 26.640 | 503 | 295 | 14 | 63 | 544 | 37 | 486 | 4.41e-38 | 152 |
| Msa0317290 | AT1G52520.1 | 25.761 | 493 | 327 | 14 | 61 | 545 | 85 | 546 | 1.01e-36 | 147 |
| Msa0317290 | AT2G27110.3 | 28.013 | 307 | 213 | 5 | 240 | 544 | 48 | 348 | 4.36e-36 | 145 |
| Msa0317290 | AT4G19990.1 | 26.058 | 449 | 274 | 11 | 112 | 544 | 9 | 415 | 8.97e-34 | 138 |
| Msa0317290 | AT1G80010.1 | 23.862 | 549 | 323 | 17 | 61 | 563 | 95 | 594 | 7.32e-33 | 135 |
| Msa0317290 | AT4G38170.1 | 27.457 | 346 | 240 | 6 | 244 | 583 | 16 | 356 | 6.39e-31 | 128 |
Find 133 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTACCCATCGTAAATTT+TGG | 0.158198 | 2_4:+14960978 | Msa0317290:CDS |
| TCTGAAGTATTGTTAATTAA+TGG | 0.164332 | 2_4:+14962386 | Msa0317290:three_prime_UTR |
| CCAATTAAAACTTACTTATT+AGG | 0.177601 | 2_4:-14962009 | None:intergenic |
| ATGAGATGCCTCTTGGAATA+TGG | 0.196486 | 2_4:+14960477 | Msa0317290:CDS |
| TTCTCACAACCACGAGTTAT+TGG | 0.199264 | 2_4:+14960055 | Msa0317290:CDS |
| ATCACATGTTCTTGAGTTTC+AGG | 0.210618 | 2_4:-14961766 | None:intergenic |
| ACAGTTTGATCAAAACTATT+TGG | 0.235348 | 2_4:-14962160 | None:intergenic |
| CTCATGTTGAAGCAACTTAA+AGG | 0.248230 | 2_4:-14961332 | None:intergenic |
| TGAGCAGTCTTGATTTCTTT+TGG | 0.253030 | 2_4:-14959179 | None:intergenic |
| TGTTTATTTGCAAAACAAAA+TGG | 0.260407 | 2_4:+14959789 | Msa0317290:CDS |
| AAAATCTGTCAAACTTGTTT+TGG | 0.261322 | 2_4:-14961095 | None:intergenic |
| ATTCGTGCATATGAAGCTTT+TGG | 0.265394 | 2_4:+14960413 | Msa0317290:CDS |
| CAATATGAATTCACAATTGA+TGG | 0.266214 | 2_4:+14960347 | Msa0317290:CDS |
| CTGAAGTATTGTTAATTAAT+GGG | 0.295771 | 2_4:+14962387 | Msa0317290:three_prime_UTR |
| TTCCTTCGCATGGGCTATAA+AGG | 0.299718 | 2_4:+14960568 | Msa0317290:CDS |
| AATATCATCATAAAGATAAA+AGG | 0.310779 | 2_4:+14961739 | Msa0317290:CDS |
| TCAAGAACATGTGATTGATT+TGG | 0.314506 | 2_4:+14961774 | Msa0317290:CDS |
| CATCAATTGTGAATTCATAT+TGG | 0.326055 | 2_4:-14960346 | None:intergenic |
| GCAGCTTCAACCCCTCCTTT+TGG | 0.339248 | 2_4:-14961880 | None:intergenic |
| ATTCAATCATATAGTGGTAT+TGG | 0.341059 | 2_4:+14960257 | Msa0317290:CDS |
| ACTCTCGCTATAAGACTTAC+AGG | 0.343612 | 2_4:-14960167 | None:intergenic |
| CAAATTGGAGCATATTGTTT+GGG | 0.347369 | 2_4:+14960376 | Msa0317290:CDS |
| GAGCATATTGTTTGGGCATT+TGG | 0.348974 | 2_4:+14960383 | Msa0317290:CDS |
| CCTTTACCCTTTACTTTGTT+CGG | 0.349412 | 2_4:+14959233 | Msa0317290:five_prime_UTR |
| ACAAATTGGAGCATATTGTT+TGG | 0.352856 | 2_4:+14960375 | Msa0317290:CDS |
| TTAGTCTCTAATTCGATGTT+TGG | 0.356770 | 2_4:+14961660 | Msa0317290:intron |
| AATTGATGGAAGTAACAAAT+TGG | 0.358783 | 2_4:+14960361 | Msa0317290:CDS |
| ATGACAACGACGAGGCTTCT+TGG | 0.366012 | 2_4:-14961902 | None:intergenic |
| AACGTCACAGTCAGCATTGT+TGG | 0.377007 | 2_4:-14961809 | None:intergenic |
| ATGGTCTCACAGTTTGGTTT+GGG | 0.387072 | 2_4:+14960932 | Msa0317290:CDS |
| GTAGTTACTAAGAGAAGAAT+TGG | 0.389295 | 2_4:+14959996 | Msa0317290:CDS |
| AATGGTCTCACAGTTTGGTT+TGG | 0.398201 | 2_4:+14960931 | Msa0317290:CDS |
| CCTCAAGTCACTAACATTGA+TGG | 0.399508 | 2_4:+14959600 | Msa0317290:CDS |
| AGTGAATTAGACAGATGAAT+TGG | 0.402311 | 2_4:+14962215 | Msa0317290:three_prime_UTR |
| GCAATGGCTTCTTTAATTGA+AGG | 0.406562 | 2_4:-14960740 | None:intergenic |
| TCAAATATTTGCCCTTCAAA+AGG | 0.411166 | 2_4:-14959630 | None:intergenic |
| ATACTAGTAATTACACAGTT+TGG | 0.415911 | 2_4:-14962345 | None:intergenic |
| ATCCATCGGGTGTTTATAAG+AGG | 0.417116 | 2_4:+14959868 | Msa0317290:CDS |
| TTTGCTGGAATGACAACAAC+AGG | 0.418779 | 2_4:+14961028 | Msa0317290:CDS |
| GTCATCTTGAAATAGTGAAT+TGG | 0.425948 | 2_4:+14962124 | Msa0317290:exon |
| AAAGTAATGGTCTCACAGTT+TGG | 0.427267 | 2_4:+14960926 | Msa0317290:CDS |
| TGAGATGCCTCTTGGAATAT+GGG | 0.433904 | 2_4:+14960478 | Msa0317290:CDS |
| TTGGGCCTTAGCTTATTTGA+AGG | 0.435274 | 2_4:+14960997 | Msa0317290:CDS |
| TATACGACCACCATCAACTT+TGG | 0.437731 | 2_4:-14961422 | None:intergenic |
| CGAACAAAGTAAAGGGTAAA+GGG | 0.438866 | 2_4:-14959232 | None:intergenic |
| CTTTAAACATGAGTTTCATA+AGG | 0.439926 | 2_4:+14960862 | Msa0317290:CDS |
| GACGAGGCATGTTCTTCAAT+AGG | 0.443666 | 2_4:-14961292 | None:intergenic |
| TGATTAGTTCCACCACAATC+TGG | 0.446933 | 2_4:-14961928 | None:intergenic |
| AACCGTTATGAGATGCCTCT+TGG | 0.448749 | 2_4:+14960470 | Msa0317290:CDS |
| AAAGACAAGTGAACGAGAAC+AGG | 0.453486 | 2_4:+14961696 | Msa0317290:CDS |
| TCAGCTTCCTCCATCTTGTT+CGG | 0.457961 | 2_4:+14959199 | Msa0317290:five_prime_UTR |
| GGAAAATGTGTTGTAATATG+AGG | 0.458305 | 2_4:-14961271 | None:intergenic |
| GTTTGTCATCGTGGTGGTAT+TGG | 0.458689 | 2_4:+14959897 | Msa0317290:CDS |
| ATGCGATCTTGATCAACAAT+TGG | 0.465554 | 2_4:-14960119 | None:intergenic |
| CTCACAGTTTGGTTTGGGTG+TGG | 0.468983 | 2_4:+14960937 | Msa0317290:CDS |
| ATAACGGTTTATTCTATATG+TGG | 0.472493 | 2_4:-14960456 | None:intergenic |
| CCGAACAAAGTAAAGGGTAA+AGG | 0.477098 | 2_4:-14959233 | None:intergenic |
| TATAAGACTTACAGGGCAAC+CGG | 0.483233 | 2_4:-14960159 | None:intergenic |
| CTTGAGTTAGAGAAAAGAAC+AGG | 0.494786 | 2_4:+14960191 | Msa0317290:CDS |
| AAAACAAAAGGTCGGCCAAA+AGG | 0.495104 | 2_4:+14961850 | Msa0317290:CDS |
| TTGATAGGATCATGAAGGGT+TGG | 0.498564 | 2_4:+14962096 | Msa0317290:intron |
| TGAAGCAACTTAAAGGCATA+AGG | 0.499495 | 2_4:-14961325 | None:intergenic |
| AGAAGATTTCTTCCTTCGCA+TGG | 0.503824 | 2_4:+14960558 | Msa0317290:CDS |
| CGTTGTCATGTTCCAGATTG+TGG | 0.504732 | 2_4:+14961916 | Msa0317290:CDS |
| AATTGTGAATTCATATTGGA+AGG | 0.507660 | 2_4:-14960342 | None:intergenic |
| CCAAAAGGATCAAGACCAAA+AGG | 0.514192 | 2_4:+14961865 | Msa0317290:CDS |
| GTCAAAATTAGAAATCAAGC+TGG | 0.517568 | 2_4:+14961214 | Msa0317290:CDS |
| TTTAATTGAAGGATCTTGAT+CGG | 0.518039 | 2_4:-14960729 | None:intergenic |
| TGGTAATAATAAACTATAGC+AGG | 0.519610 | 2_4:-14962325 | None:intergenic |
| ATTGGAATGTTACGATAAGC+AGG | 0.522557 | 2_4:-14960101 | None:intergenic |
| TAGTTTGATCAAAGCAGCTT+CGG | 0.523562 | 2_4:-14962238 | None:intergenic |
| ATGTTATTGACTTGAGGCAA+GGG | 0.525418 | 2_4:-14959702 | None:intergenic |
| TAAGCAATGATGCTAGTGAT+TGG | 0.525487 | 2_4:+14959571 | Msa0317290:CDS |
| ACCACGCAAAACTGTTGAAG+TGG | 0.526679 | 2_4:+14959923 | Msa0317290:CDS |
| TTAGAGAAAAGAACAGGCAC+AGG | 0.528687 | 2_4:+14960197 | Msa0317290:CDS |
| TGGGTTGGTGTTGATAATCA+TGG | 0.529258 | 2_4:+14960497 | Msa0317290:CDS |
| ATACTATTATTGTCTAAAGC+CGG | 0.531055 | 2_4:+14960140 | Msa0317290:CDS |
| TTCCAAGAGGCATCTCATAA+CGG | 0.531646 | 2_4:-14960472 | None:intergenic |
| CAACATCATACCAAAGTTGA+TGG | 0.538288 | 2_4:+14961412 | Msa0317290:CDS |
| TGAACGAGAATGGAAAGTAA+TGG | 0.544871 | 2_4:+14960913 | Msa0317290:CDS |
| TTGCACAACATAAGAGCCAT+TGG | 0.551354 | 2_4:-14961392 | None:intergenic |
| CTCAAGTCACTAACATTGAT+GGG | 0.551567 | 2_4:+14959601 | Msa0317290:CDS |
| TAAGAGAAGAATTGGCATTG+AGG | 0.553953 | 2_4:+14960004 | Msa0317290:CDS |
| GAAGATTTCTTCCTTCGCAT+GGG | 0.556681 | 2_4:+14960559 | Msa0317290:CDS |
| GTGCTTTGATAGGATCATGA+AGG | 0.556862 | 2_4:+14962091 | Msa0317290:intron |
| CAAGTCAATAACATTGATGA+GGG | 0.558520 | 2_4:+14959711 | Msa0317290:CDS |
| AAAGTCCTTCAAATAAGCTA+AGG | 0.560983 | 2_4:-14961002 | None:intergenic |
| ACATGTGATTGATTTGGAAG+AGG | 0.565753 | 2_4:+14961780 | Msa0317290:CDS |
| GTTTGGCAATTCCATTGCAA+TGG | 0.567761 | 2_4:-14960756 | None:intergenic |
| ATGTGATTGTAGTGCAAAGA+TGG | 0.570079 | 2_4:+14959974 | Msa0317290:CDS |
| ATGTTAGTGACTTGAGGCAA+GGG | 0.572230 | 2_4:-14959594 | None:intergenic |
| GTGTCAGAAGAGAATCCATC+GGG | 0.572540 | 2_4:+14959855 | Msa0317290:CDS |
| TCATCAATGTTATTGACTTG+AGG | 0.573525 | 2_4:-14959708 | None:intergenic |
| AATTAAAGAAGCCATTGCAA+TGG | 0.576797 | 2_4:+14960745 | Msa0317290:CDS |
| TAGAAATCAAGCTGGAGAAG+AGG | 0.577533 | 2_4:+14961222 | Msa0317290:CDS |
| CGAGTTATTGGATGACAAAG+AGG | 0.580002 | 2_4:+14960067 | Msa0317290:CDS |
| AATGTTATTGACTTGAGGCA+AGG | 0.580693 | 2_4:-14959703 | None:intergenic |
| AGTCACTAACATTGATGGGT+GGG | 0.589348 | 2_4:+14959605 | Msa0317290:CDS |
| TTGTCGCAAAGCTGTCAAGT+TGG | 0.589381 | 2_4:+14960807 | Msa0317290:CDS |
| TCATCATATCTCGAACCTAG+TGG | 0.597376 | 2_4:-14960839 | None:intergenic |
| AATGTTAGTGACTTGAGGCA+AGG | 0.597462 | 2_4:-14959595 | None:intergenic |
| AGGGAATTTGTTTGTCATCG+TGG | 0.598966 | 2_4:+14959888 | Msa0317290:CDS |
| TCCCTCTTATAAACACCCGA+TGG | 0.599604 | 2_4:-14959870 | None:intergenic |
| GCAGCAATTGAAGCTGCCAA+TGG | 0.600590 | 2_4:+14961376 | Msa0317290:CDS |
| TACCTTTATAGCCCATGCGA+AGG | 0.601051 | 2_4:-14960570 | None:intergenic |
| TATCAGATGACCGAACAAGA+TGG | 0.602390 | 2_4:-14959209 | None:intergenic |
| TCAAGTCAATAACATTGATG+AGG | 0.603097 | 2_4:+14959710 | Msa0317290:CDS |
| CTGTTGAAGTGGAAAATCAA+AGG | 0.606328 | 2_4:+14959934 | Msa0317290:CDS |
| CTTTGTCATCCAATAACTCG+TGG | 0.606716 | 2_4:-14960064 | None:intergenic |
| AAGGATCAAGACCAAAAGGA+GGG | 0.611165 | 2_4:+14961869 | Msa0317290:CDS |
| CCATCAATGTTAGTGACTTG+AGG | 0.613145 | 2_4:-14959600 | None:intergenic |
| CTAAGGCCCAAAATTTACGA+TGG | 0.615020 | 2_4:-14960985 | None:intergenic |
| TAAGGCCCAAAATTTACGAT+GGG | 0.615697 | 2_4:-14960984 | None:intergenic |
| ATGCCTCTTGGAATATGGGT+TGG | 0.616141 | 2_4:+14960482 | Msa0317290:CDS |
| GAATTTGTTTGTCATCGTGG+TGG | 0.618777 | 2_4:+14959891 | Msa0317290:CDS |
| AAGTCACTAACATTGATGGG+TGG | 0.624878 | 2_4:+14959604 | Msa0317290:CDS |
| TCCATCGGGTGTTTATAAGA+GGG | 0.625908 | 2_4:+14959869 | Msa0317290:CDS |
| ACGAGAACAGGTTGCCACAA+GGG | 0.630576 | 2_4:+14961708 | Msa0317290:CDS |
| TGTGTCAGAAGAGAATCCAT+CGG | 0.632507 | 2_4:+14959854 | Msa0317290:CDS |
| AACGAGAACAGGTTGCCACA+AGG | 0.633734 | 2_4:+14961707 | Msa0317290:CDS |
| TACTTATTAGGAGATTGAGA+AGG | 0.635742 | 2_4:-14961997 | None:intergenic |
| TGTCATGTTCCAGATTGTGG+TGG | 0.637809 | 2_4:+14961919 | Msa0317290:CDS |
| CTCTCGCTATAAGACTTACA+GGG | 0.647869 | 2_4:-14960166 | None:intergenic |
| AAAGGATCAAGACCAAAAGG+AGG | 0.655085 | 2_4:+14961868 | Msa0317290:CDS |
| CAGATGACCGAACAAGATGG+AGG | 0.662759 | 2_4:-14959206 | None:intergenic |
| ACACCAACCCATATTCCAAG+AGG | 0.676376 | 2_4:-14960485 | None:intergenic |
| TGCTTTGATAGGATCATGAA+GGG | 0.676443 | 2_4:+14962092 | Msa0317290:intron |
| AAGTTTGAAAGATCGAGATG+AGG | 0.682349 | 2_4:+14960319 | Msa0317290:CDS |
| CATCATACCAAAGTTGATGG+TGG | 0.683172 | 2_4:+14961415 | Msa0317290:CDS |
| AGGATCAAGACCAAAAGGAG+GGG | 0.696841 | 2_4:+14961870 | Msa0317290:CDS |
| AAGTCAATAACATTGATGAG+GGG | 0.714581 | 2_4:+14959712 | Msa0317290:CDS |
| ATAAGGTGTGAGTATAGACG+AGG | 0.720548 | 2_4:-14961308 | None:intergenic |
| TCTGGAACATGACAACGACG+AGG | 0.797744 | 2_4:-14961910 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAAATAAAATAGAATTT+GGG | - | chr2_4:14959475-14959494 | None:intergenic | 10.0% |
| !! | ATCATAAATAAAATAGAATT+TGG | - | chr2_4:14959476-14959495 | None:intergenic | 10.0% |
| !!! | TAATATTAACTGTATTTTTA+TGG | + | chr2_4:14962069-14962088 | Msa0317290:intron | 10.0% |
| !! | TTGAAAAAATAATATTTACC+TGG | - | chr2_4:14959306-14959325 | None:intergenic | 15.0% |
| !! | TTAGTTAAGAATTATATACA+TGG | - | chr2_4:14959420-14959439 | None:intergenic | 15.0% |
| !! | CATAAATAAAATAGAATTTG+GGG | - | chr2_4:14959474-14959493 | None:intergenic | 15.0% |
| !!! | AATTTTATTCAATCATATAG+TGG | + | chr2_4:14960251-14960270 | Msa0317290:CDS | 15.0% |
| !! | AATATCATCATAAAGATAAA+AGG | + | chr2_4:14961739-14961758 | Msa0317290:CDS | 15.0% |
| !!! | TATGTAATTAGTATATTTTG+TGG | + | chr2_4:14962259-14962278 | Msa0317290:three_prime_UTR | 15.0% |
| !!! | GTTTGTTTCTTTTCTTTTAA+TGG | + | chr2_4:14959350-14959369 | Msa0317290:intron | 20.0% |
| !! | TGTTTATTTGCAAAACAAAA+TGG | + | chr2_4:14959789-14959808 | Msa0317290:CDS | 20.0% |
| !!! | AACAAAATGGATTTTCTATT+AGG | + | chr2_4:14959802-14959821 | Msa0317290:CDS | 20.0% |
| !!! | CTAATATCTTTTTCTAAGAA+TGG | - | chr2_4:14960230-14960249 | None:intergenic | 20.0% |
| !!! | CATGGAAATTCAATTTTTTT+TGG | + | chr2_4:14960515-14960534 | Msa0317290:CDS | 20.0% |
| !!! | TGATTGTTATATTTTTGTGT+AGG | + | chr2_4:14961180-14961199 | Msa0317290:intron | 20.0% |
| !!! | TTATTACATGACTAGATTTT+GGG | - | chr2_4:14961612-14961631 | None:intergenic | 20.0% |
| !!! | TTTATTACATGACTAGATTT+TGG | - | chr2_4:14961613-14961632 | None:intergenic | 20.0% |
| !! | CCAATTAAAACTTACTTATT+AGG | - | chr2_4:14962012-14962031 | None:intergenic | 20.0% |
| !!! | CCTAATAAGTAAGTTTTAAT+TGG | + | chr2_4:14962009-14962028 | Msa0317290:intron | 20.0% |
| ! | AACACAAACTTAGCTAATTT+GGG | - | chr2_4:14959392-14959411 | None:intergenic | 25.0% |
| ! | AAACACAAACTTAGCTAATT+TGG | - | chr2_4:14959393-14959412 | None:intergenic | 25.0% |
| !! | TCAAATATTTTCCCTTCAAA+AGG | - | chr2_4:14959741-14959760 | None:intergenic | 25.0% |
| !! | ATACTATTATTGTCTAAAGC+CGG | + | chr2_4:14960140-14960159 | Msa0317290:CDS | 25.0% |
| ! | ATTCAATCATATAGTGGTAT+TGG | + | chr2_4:14960257-14960276 | Msa0317290:CDS | 25.0% |
| ! | AATTGTGAATTCATATTGGA+AGG | - | chr2_4:14960345-14960364 | None:intergenic | 25.0% |
| ! | CATCAATTGTGAATTCATAT+TGG | - | chr2_4:14960349-14960368 | None:intergenic | 25.0% |
| ! | CAATATGAATTCACAATTGA+TGG | + | chr2_4:14960347-14960366 | Msa0317290:CDS | 25.0% |
| ! | AATTGATGGAAGTAACAAAT+TGG | + | chr2_4:14960361-14960380 | Msa0317290:CDS | 25.0% |
| ! | ATAACGGTTTATTCTATATG+TGG | - | chr2_4:14960459-14960478 | None:intergenic | 25.0% |
| ! | TTTAATTGAAGGATCTTGAT+CGG | - | chr2_4:14960732-14960751 | None:intergenic | 25.0% |
| ! | CTTTAAACATGAGTTTCATA+AGG | + | chr2_4:14960862-14960881 | Msa0317290:CDS | 25.0% |
| !!! | AAAATCTGTCAAACTTGTTT+TGG | - | chr2_4:14961098-14961117 | None:intergenic | 25.0% |
| !!! | TGTTATATTTTTGTGTAGGT+TGG | + | chr2_4:14961184-14961203 | Msa0317290:intron | 25.0% |
| !! | TGTAAAGAGTTTCAATTTTC+AGG | + | chr2_4:14961484-14961503 | Msa0317290:intron | 25.0% |
| ! | TTGTTTCAAAAACAAAAGGT+CGG | + | chr2_4:14961842-14961861 | Msa0317290:CDS | 25.0% |
| ! | TCCAAACAAAAAGAGAAAAA+TGG | + | chr2_4:14961966-14961985 | Msa0317290:CDS | 25.0% |
| !!! | TCCATTTTTCTCTTTTTGTT+TGG | - | chr2_4:14961970-14961989 | None:intergenic | 25.0% |
| !!! | TATTTTTATGGTGCTTTGAT+AGG | + | chr2_4:14962081-14962100 | Msa0317290:intron | 25.0% |
| ! | ACAGTTTGATCAAAACTATT+TGG | - | chr2_4:14962163-14962182 | None:intergenic | 25.0% |
| !! | TGTGTAATTAGTGAATTTTG+TGG | + | chr2_4:14962180-14962199 | Msa0317290:three_prime_UTR | 25.0% |
| ! | TGGTAATAATAAACTATAGC+AGG | - | chr2_4:14962328-14962347 | None:intergenic | 25.0% |
| ! | ATACTAGTAATTACACAGTT+TGG | - | chr2_4:14962348-14962367 | None:intergenic | 25.0% |
| ! | TTTTGACCGAACAAAGTAAA+GGG | - | chr2_4:14959242-14959261 | None:intergenic | 30.0% |
| ! | TTTTTGACCGAACAAAGTAA+AGG | - | chr2_4:14959243-14959262 | None:intergenic | 30.0% |
| AACAAACAATGAGTTCAAGA+TGG | - | chr2_4:14959337-14959356 | None:intergenic | 30.0% | |
| ACACAAACTTAGCTAATTTG+GGG | - | chr2_4:14959391-14959410 | None:intergenic | 30.0% | |
| TCAAATATTTGCCCTTCAAA+AGG | - | chr2_4:14959633-14959652 | None:intergenic | 30.0% | |
| !! | TCATCAATGTTATTGACTTG+AGG | - | chr2_4:14959711-14959730 | None:intergenic | 30.0% |
| TCAAGTCAATAACATTGATG+AGG | + | chr2_4:14959710-14959729 | Msa0317290:CDS | 30.0% | |
| CAAGTCAATAACATTGATGA+GGG | + | chr2_4:14959711-14959730 | Msa0317290:CDS | 30.0% | |
| AAGTCAATAACATTGATGAG+GGG | + | chr2_4:14959712-14959731 | Msa0317290:CDS | 30.0% | |
| GTAGTTACTAAGAGAAGAAT+TGG | + | chr2_4:14959996-14960015 | Msa0317290:CDS | 30.0% | |
| ! | AATTGGCATTGAGGAAAAAT+GGG | + | chr2_4:14960013-14960032 | Msa0317290:CDS | 30.0% |
| ACAAATTGGAGCATATTGTT+TGG | + | chr2_4:14960375-14960394 | Msa0317290:CDS | 30.0% | |
| CAAATTGGAGCATATTGTTT+GGG | + | chr2_4:14960376-14960395 | Msa0317290:CDS | 30.0% | |
| ! | ATTTTCCTTTCACAAAAGCT+AGG | - | chr2_4:14960691-14960710 | None:intergenic | 30.0% |
| ! | TGATCGGTAAGAATTGTTTT+TGG | - | chr2_4:14960716-14960735 | None:intergenic | 30.0% |
| AATTAAAGAAGCCATTGCAA+TGG | + | chr2_4:14960745-14960764 | Msa0317290:CDS | 30.0% | |
| ! | CAAAATGCATGTTTTGTGTT+TGG | - | chr2_4:14960776-14960795 | None:intergenic | 30.0% |
| ! | CAAAACATGCATTTTGCATA+TGG | + | chr2_4:14960780-14960799 | Msa0317290:CDS | 30.0% |
| ! | TCTTTACCCATCGTAAATTT+TGG | + | chr2_4:14960978-14960997 | Msa0317290:CDS | 30.0% |
| ! | CTTTACCCATCGTAAATTTT+GGG | + | chr2_4:14960979-14960998 | Msa0317290:CDS | 30.0% |
| AAAGTCCTTCAAATAAGCTA+AGG | - | chr2_4:14961005-14961024 | None:intergenic | 30.0% | |
| !!! | TTGAAGGACTTTTTTTTTGC+TGG | + | chr2_4:14961013-14961032 | Msa0317290:CDS | 30.0% |
| GTCAAAATTAGAAATCAAGC+TGG | + | chr2_4:14961214-14961233 | Msa0317290:CDS | 30.0% | |
| GGAAAATGTGTTGTAATATG+AGG | - | chr2_4:14961274-14961293 | None:intergenic | 30.0% | |
| !! | CGAAAAGGAAGATATTTTGA+TGG | - | chr2_4:14961565-14961584 | None:intergenic | 30.0% |
| ! | CAAAATATCTTCCTTTTCGA+TGG | + | chr2_4:14961566-14961585 | Msa0317290:intron | 30.0% |
| CATGTAATAAACTGCAATGA+TGG | + | chr2_4:14961622-14961641 | Msa0317290:intron | 30.0% | |
| TAGAGACTAAAATTTAGCAG+AGG | - | chr2_4:14961650-14961669 | None:intergenic | 30.0% | |
| TTAGTCTCTAATTCGATGTT+TGG | + | chr2_4:14961660-14961679 | Msa0317290:intron | 30.0% | |
| TCAAGAACATGTGATTGATT+TGG | + | chr2_4:14961774-14961793 | Msa0317290:CDS | 30.0% | |
| !!! | CCTTTTGTTTTTGAAACAAC+AGG | - | chr2_4:14961841-14961860 | None:intergenic | 30.0% |
| !! | CCTGTTGTTTCAAAAACAAA+AGG | + | chr2_4:14961838-14961857 | Msa0317290:CDS | 30.0% |
| TACTTATTAGGAGATTGAGA+AGG | - | chr2_4:14962000-14962019 | None:intergenic | 30.0% | |
| GTCATCTTGAAATAGTGAAT+TGG | + | chr2_4:14962124-14962143 | Msa0317290:exon | 30.0% | |
| AGTGAATTAGACAGATGAAT+TGG | + | chr2_4:14962215-14962234 | Msa0317290:three_prime_UTR | 30.0% | |
| CGAACAAAGTAAAGGGTAAA+GGG | - | chr2_4:14959235-14959254 | None:intergenic | 35.0% | |
| CCTTTACCCTTTACTTTGTT+CGG | + | chr2_4:14959233-14959252 | Msa0317290:five_prime_UTR | 35.0% | |
| TCAGTCAAAAAGCTAATTCC+AGG | + | chr2_4:14959285-14959304 | Msa0317290:five_prime_UTR | 35.0% | |
| CACAAACTTAGCTAATTTGG+GGG | - | chr2_4:14959390-14959409 | None:intergenic | 35.0% | |
| TAAGCAATGATGCTAGTGAT+TGG | + | chr2_4:14959571-14959590 | Msa0317290:CDS | 35.0% | |
| CTCAAGTCACTAACATTGAT+GGG | + | chr2_4:14959601-14959620 | Msa0317290:CDS | 35.0% | |
| !! | ATGTTATTGACTTGAGGCAA+GGG | - | chr2_4:14959705-14959724 | None:intergenic | 35.0% |
| !! | AATGTTATTGACTTGAGGCA+AGG | - | chr2_4:14959706-14959725 | None:intergenic | 35.0% |
| CTGTTGAAGTGGAAAATCAA+AGG | + | chr2_4:14959934-14959953 | Msa0317290:CDS | 35.0% | |
| ATGTGATTGTAGTGCAAAGA+TGG | + | chr2_4:14959974-14959993 | Msa0317290:CDS | 35.0% | |
| TAAGAGAAGAATTGGCATTG+AGG | + | chr2_4:14960004-14960023 | Msa0317290:CDS | 35.0% | |
| ! | GAATTGGCATTGAGGAAAAA+TGG | + | chr2_4:14960012-14960031 | Msa0317290:CDS | 35.0% |
| ATTGGAATGTTACGATAAGC+AGG | - | chr2_4:14960104-14960123 | None:intergenic | 35.0% | |
| ATGCGATCTTGATCAACAAT+TGG | - | chr2_4:14960122-14960141 | None:intergenic | 35.0% | |
| CTTGAGTTAGAGAAAAGAAC+AGG | + | chr2_4:14960191-14960210 | Msa0317290:CDS | 35.0% | |
| AAGTTTGAAAGATCGAGATG+AGG | + | chr2_4:14960319-14960338 | Msa0317290:CDS | 35.0% | |
| ! | ATTCGTGCATATGAAGCTTT+TGG | + | chr2_4:14960413-14960432 | Msa0317290:CDS | 35.0% |
| !! | AGTTTCCTAGCTTTTGTGAA+AGG | + | chr2_4:14960683-14960702 | Msa0317290:CDS | 35.0% |
| GCAATGGCTTCTTTAATTGA+AGG | - | chr2_4:14960743-14960762 | None:intergenic | 35.0% | |
| !!! | AGTTGGTTTTCTTTTCCACT+AGG | + | chr2_4:14960824-14960843 | Msa0317290:CDS | 35.0% |
| ! | CAGATGATTTTGAACGAGAA+TGG | + | chr2_4:14960903-14960922 | Msa0317290:CDS | 35.0% |
| TGAACGAGAATGGAAAGTAA+TGG | + | chr2_4:14960913-14960932 | Msa0317290:CDS | 35.0% | |
| AAAGTAATGGTCTCACAGTT+TGG | + | chr2_4:14960926-14960945 | Msa0317290:CDS | 35.0% | |
| TAAGGCCCAAAATTTACGAT+GGG | - | chr2_4:14960987-14961006 | None:intergenic | 35.0% | |
| ! | TGAAGCAACTTAAAGGCATA+AGG | - | chr2_4:14961328-14961347 | None:intergenic | 35.0% |
| CTCATGTTGAAGCAACTTAA+AGG | - | chr2_4:14961335-14961354 | None:intergenic | 35.0% | |
| CAACATCATACCAAAGTTGA+TGG | + | chr2_4:14961412-14961431 | Msa0317290:CDS | 35.0% | |
| ! | GATATTTTCTAACTCCCTTG+TGG | - | chr2_4:14961725-14961744 | None:intergenic | 35.0% |
| ATCACATGTTCTTGAGTTTC+AGG | - | chr2_4:14961769-14961788 | None:intergenic | 35.0% | |
| !! | ACATGTGATTGATTTGGAAG+AGG | + | chr2_4:14961780-14961799 | Msa0317290:CDS | 35.0% |
| TGCTTTGATAGGATCATGAA+GGG | + | chr2_4:14962092-14962111 | Msa0317290:intron | 35.0% | |
| TAGTTTGATCAAAGCAGCTT+CGG | - | chr2_4:14962241-14962260 | None:intergenic | 35.0% | |
| TATCAGATGACCGAACAAGA+TGG | - | chr2_4:14959212-14959231 | None:intergenic | 40.0% | |
| CCGAACAAAGTAAAGGGTAA+AGG | - | chr2_4:14959236-14959255 | None:intergenic | 40.0% | |
| !! | GCTTTTTGACTGAAGCAAGA+TGG | - | chr2_4:14959278-14959297 | None:intergenic | 40.0% |
| ATGTTAGTGACTTGAGGCAA+GGG | - | chr2_4:14959597-14959616 | None:intergenic | 40.0% | |
| AATGTTAGTGACTTGAGGCA+AGG | - | chr2_4:14959598-14959617 | None:intergenic | 40.0% | |
| CCATCAATGTTAGTGACTTG+AGG | - | chr2_4:14959603-14959622 | None:intergenic | 40.0% | |
| CCTCAAGTCACTAACATTGA+TGG | + | chr2_4:14959600-14959619 | Msa0317290:CDS | 40.0% | |
| AAGTCACTAACATTGATGGG+TGG | + | chr2_4:14959604-14959623 | Msa0317290:CDS | 40.0% | |
| ! | AGTCACTAACATTGATGGGT+GGG | + | chr2_4:14959605-14959624 | Msa0317290:CDS | 40.0% |
| ! | ATGAGGGGATTCCTTTTGAA+GGG | + | chr2_4:14959727-14959746 | Msa0317290:CDS | 40.0% |
| TGTGTCAGAAGAGAATCCAT+CGG | + | chr2_4:14959854-14959873 | Msa0317290:CDS | 40.0% | |
| ATCCATCGGGTGTTTATAAG+AGG | + | chr2_4:14959868-14959887 | Msa0317290:CDS | 40.0% | |
| TCCATCGGGTGTTTATAAGA+GGG | + | chr2_4:14959869-14959888 | Msa0317290:CDS | 40.0% | |
| ! | AGGGAATTTGTTTGTCATCG+TGG | + | chr2_4:14959888-14959907 | Msa0317290:CDS | 40.0% |
| ! | GAATTTGTTTGTCATCGTGG+TGG | + | chr2_4:14959891-14959910 | Msa0317290:CDS | 40.0% |
| TTCTCACAACCACGAGTTAT+TGG | + | chr2_4:14960055-14960074 | Msa0317290:CDS | 40.0% | |
| CTTTGTCATCCAATAACTCG+TGG | - | chr2_4:14960067-14960086 | None:intergenic | 40.0% | |
| CGAGTTATTGGATGACAAAG+AGG | + | chr2_4:14960067-14960086 | Msa0317290:CDS | 40.0% | |
| TATAAGACTTACAGGGCAAC+CGG | - | chr2_4:14960162-14960181 | None:intergenic | 40.0% | |
| CTCTCGCTATAAGACTTACA+GGG | - | chr2_4:14960169-14960188 | None:intergenic | 40.0% | |
| ACTCTCGCTATAAGACTTAC+AGG | - | chr2_4:14960170-14960189 | None:intergenic | 40.0% | |
| TTAGAGAAAAGAACAGGCAC+AGG | + | chr2_4:14960197-14960216 | Msa0317290:CDS | 40.0% | |
| GAGCATATTGTTTGGGCATT+TGG | + | chr2_4:14960383-14960402 | Msa0317290:CDS | 40.0% | |
| !! | TTCCAAGAGGCATCTCATAA+CGG | - | chr2_4:14960475-14960494 | None:intergenic | 40.0% |
| ATGAGATGCCTCTTGGAATA+TGG | + | chr2_4:14960477-14960496 | Msa0317290:CDS | 40.0% | |
| TGAGATGCCTCTTGGAATAT+GGG | + | chr2_4:14960478-14960497 | Msa0317290:CDS | 40.0% | |
| !! | TGGGTTGGTGTTGATAATCA+TGG | + | chr2_4:14960497-14960516 | Msa0317290:CDS | 40.0% |
| AGAAGATTTCTTCCTTCGCA+TGG | + | chr2_4:14960558-14960577 | Msa0317290:CDS | 40.0% | |
| GAAGATTTCTTCCTTCGCAT+GGG | + | chr2_4:14960559-14960578 | Msa0317290:CDS | 40.0% | |
| GTTTGGCAATTCCATTGCAA+TGG | - | chr2_4:14960759-14960778 | None:intergenic | 40.0% | |
| TCATCATATCTCGAACCTAG+TGG | - | chr2_4:14960842-14960861 | None:intergenic | 40.0% | |
| AATGGTCTCACAGTTTGGTT+TGG | + | chr2_4:14960931-14960950 | Msa0317290:CDS | 40.0% | |
| ! | ATGGTCTCACAGTTTGGTTT+GGG | + | chr2_4:14960932-14960951 | Msa0317290:CDS | 40.0% |
| CTAAGGCCCAAAATTTACGA+TGG | - | chr2_4:14960988-14961007 | None:intergenic | 40.0% | |
| TTGGGCCTTAGCTTATTTGA+AGG | + | chr2_4:14960997-14961016 | Msa0317290:CDS | 40.0% | |
| TTTGCTGGAATGACAACAAC+AGG | + | chr2_4:14961028-14961047 | Msa0317290:CDS | 40.0% | |
| TAGAAATCAAGCTGGAGAAG+AGG | + | chr2_4:14961222-14961241 | Msa0317290:CDS | 40.0% | |
| ATAAGGTGTGAGTATAGACG+AGG | - | chr2_4:14961311-14961330 | None:intergenic | 40.0% | |
| TTGCACAACATAAGAGCCAT+TGG | - | chr2_4:14961395-14961414 | None:intergenic | 40.0% | |
| !! | CATCATACCAAAGTTGATGG+TGG | + | chr2_4:14961415-14961434 | Msa0317290:CDS | 40.0% |
| TATACGACCACCATCAACTT+TGG | - | chr2_4:14961425-14961444 | None:intergenic | 40.0% | |
| AAAGACAAGTGAACGAGAAC+AGG | + | chr2_4:14961696-14961715 | Msa0317290:CDS | 40.0% | |
| AAAACAAAAGGTCGGCCAAA+AGG | + | chr2_4:14961850-14961869 | Msa0317290:CDS | 40.0% | |
| !!! | CCTTTTGGTCTTGATCCTTT+TGG | - | chr2_4:14961868-14961887 | None:intergenic | 40.0% |
| CCAAAAGGATCAAGACCAAA+AGG | + | chr2_4:14961865-14961884 | Msa0317290:CDS | 40.0% | |
| AAAGGATCAAGACCAAAAGG+AGG | + | chr2_4:14961868-14961887 | Msa0317290:CDS | 40.0% | |
| AAGGATCAAGACCAAAAGGA+GGG | + | chr2_4:14961869-14961888 | Msa0317290:CDS | 40.0% | |
| ! | TGATTAGTTCCACCACAATC+TGG | - | chr2_4:14961931-14961950 | None:intergenic | 40.0% |
| GTGCTTTGATAGGATCATGA+AGG | + | chr2_4:14962091-14962110 | Msa0317290:intron | 40.0% | |
| TTGATAGGATCATGAAGGGT+TGG | + | chr2_4:14962096-14962115 | Msa0317290:intron | 40.0% | |
| TCAGCTTCCTCCATCTTGTT+CGG | + | chr2_4:14959199-14959218 | Msa0317290:five_prime_UTR | 45.0% | |
| !! | ATGGGTGGGTTCCTTTTGAA+GGG | + | chr2_4:14959619-14959638 | Msa0317290:CDS | 45.0% |
| ! | GATGAGGGGATTCCTTTTGA+AGG | + | chr2_4:14959726-14959745 | Msa0317290:CDS | 45.0% |
| GTGTCAGAAGAGAATCCATC+GGG | + | chr2_4:14959855-14959874 | Msa0317290:CDS | 45.0% | |
| TCCCTCTTATAAACACCCGA+TGG | - | chr2_4:14959873-14959892 | None:intergenic | 45.0% | |
| GTTTGTCATCGTGGTGGTAT+TGG | + | chr2_4:14959897-14959916 | Msa0317290:CDS | 45.0% | |
| ACCACGCAAAACTGTTGAAG+TGG | + | chr2_4:14959923-14959942 | Msa0317290:CDS | 45.0% | |
| ! | TCCACTTCAACAGTTTTGCG+TGG | - | chr2_4:14959927-14959946 | None:intergenic | 45.0% |
| ! | TGGCATTGAGGAAAAATGGG+TGG | + | chr2_4:14960016-14960035 | Msa0317290:CDS | 45.0% |
| AACCGTTATGAGATGCCTCT+TGG | + | chr2_4:14960470-14960489 | Msa0317290:CDS | 45.0% | |
| ATGCCTCTTGGAATATGGGT+TGG | + | chr2_4:14960482-14960501 | Msa0317290:CDS | 45.0% | |
| ACACCAACCCATATTCCAAG+AGG | - | chr2_4:14960488-14960507 | None:intergenic | 45.0% | |
| ! | TTCCTTCGCATGGGCTATAA+AGG | + | chr2_4:14960568-14960587 | Msa0317290:CDS | 45.0% |
| TACCTTTATAGCCCATGCGA+AGG | - | chr2_4:14960573-14960592 | None:intergenic | 45.0% | |
| TTGTCGCAAAGCTGTCAAGT+TGG | + | chr2_4:14960807-14960826 | Msa0317290:CDS | 45.0% | |
| GACGAGGCATGTTCTTCAAT+AGG | - | chr2_4:14961295-14961314 | None:intergenic | 45.0% | |
| CTTTCTCGTCTCCATCGAAA+AGG | - | chr2_4:14961580-14961599 | None:intergenic | 45.0% | |
| AACGTCACAGTCAGCATTGT+TGG | - | chr2_4:14961812-14961831 | None:intergenic | 45.0% | |
| AGGATCAAGACCAAAAGGAG+GGG | + | chr2_4:14961870-14961889 | Msa0317290:CDS | 45.0% | |
| CGTTGTCATGTTCCAGATTG+TGG | + | chr2_4:14961916-14961935 | Msa0317290:CDS | 45.0% | |
| TGTCATGTTCCAGATTGTGG+TGG | + | chr2_4:14961919-14961938 | Msa0317290:CDS | 45.0% | |
| !!! | ATTTTTATTTTTAAGAAAAT+AGG | + | chr2_4:14959507-14959526 | Msa0317290:intron | 5.0% |
| CAGATGACCGAACAAGATGG+AGG | - | chr2_4:14959209-14959228 | None:intergenic | 50.0% | |
| !! | GATGGGTGGGTTCCTTTTGA+AGG | + | chr2_4:14959618-14959637 | Msa0317290:CDS | 50.0% |
| !! | CTCACAGTTTGGTTTGGGTG+TGG | + | chr2_4:14960937-14960956 | Msa0317290:CDS | 50.0% |
| GCAGCAATTGAAGCTGCCAA+TGG | + | chr2_4:14961376-14961395 | Msa0317290:CDS | 50.0% | |
| AACGAGAACAGGTTGCCACA+AGG | + | chr2_4:14961707-14961726 | Msa0317290:CDS | 50.0% | |
| ACGAGAACAGGTTGCCACAA+GGG | + | chr2_4:14961708-14961727 | Msa0317290:CDS | 50.0% | |
| ATGACAACGACGAGGCTTCT+TGG | - | chr2_4:14961905-14961924 | None:intergenic | 50.0% | |
| ! | TCTGGAACATGACAACGACG+AGG | - | chr2_4:14961913-14961932 | None:intergenic | 50.0% |
| ! | GCAGCTTCAACCCCTCCTTT+TGG | - | chr2_4:14961883-14961902 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 14959182 | 14962407 | 14959182 | ID=Msa0317290;Name=Msa0317290 |
| chr2_4 | mRNA | 14959182 | 14962407 | 14959182 | ID=Msa0317290-mRNA-1;Parent=Msa0317290;Name=Msa0317290-mRNA-1;_AED=0.06;_eAED=0.06;_QI=154|0.8|0.66|1|0.8|0.66|6|283|697 |
| chr2_4 | exon | 14959182 | 14959306 | 14959182 | ID=Msa0317290-mRNA-1:exon:5579;Parent=Msa0317290-mRNA-1 |
| chr2_4 | exon | 14959529 | 14960589 | 14959529 | ID=Msa0317290-mRNA-1:exon:5580;Parent=Msa0317290-mRNA-1 |
| chr2_4 | exon | 14960683 | 14961126 | 14960683 | ID=Msa0317290-mRNA-1:exon:5581;Parent=Msa0317290-mRNA-1 |
| chr2_4 | exon | 14961202 | 14961444 | 14961202 | ID=Msa0317290-mRNA-1:exon:5582;Parent=Msa0317290-mRNA-1 |
| chr2_4 | exon | 14961664 | 14962016 | 14961664 | ID=Msa0317290-mRNA-1:exon:5583;Parent=Msa0317290-mRNA-1 |
| chr2_4 | exon | 14962103 | 14962407 | 14962103 | ID=Msa0317290-mRNA-1:exon:5584;Parent=Msa0317290-mRNA-1 |
| chr2_4 | five_prime_UTR | 14959182 | 14959306 | 14959182 | ID=Msa0317290-mRNA-1:five_prime_utr;Parent=Msa0317290-mRNA-1 |
| chr2_4 | five_prime_UTR | 14959529 | 14959557 | 14959529 | ID=Msa0317290-mRNA-1:five_prime_utr;Parent=Msa0317290-mRNA-1 |
| chr2_4 | CDS | 14959558 | 14960589 | 14959558 | ID=Msa0317290-mRNA-1:cds;Parent=Msa0317290-mRNA-1 |
| chr2_4 | CDS | 14960683 | 14961126 | 14960683 | ID=Msa0317290-mRNA-1:cds;Parent=Msa0317290-mRNA-1 |
| chr2_4 | CDS | 14961202 | 14961444 | 14961202 | ID=Msa0317290-mRNA-1:cds;Parent=Msa0317290-mRNA-1 |
| chr2_4 | CDS | 14961664 | 14962016 | 14961664 | ID=Msa0317290-mRNA-1:cds;Parent=Msa0317290-mRNA-1 |
| chr2_4 | CDS | 14962103 | 14962124 | 14962103 | ID=Msa0317290-mRNA-1:cds;Parent=Msa0317290-mRNA-1 |
| chr2_4 | three_prime_UTR | 14962125 | 14962407 | 14962125 | ID=Msa0317290-mRNA-1:three_prime_utr;Parent=Msa0317290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
