Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003350 | sp|Q96512|PER9_ARATH | 77.152 | 302 | 69 | 0 | 5 | 306 | 45 | 346 | 4.00e-171 | 480 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003350 | Msa0092220 | 0.808407 | 3.145260e-50 | -8.615850e-47 |
| Msa0003350 | Msa0174950 | 0.800195 | 1.615283e-48 | -8.615850e-47 |
| Msa0003350 | Msa0616300 | 0.802420 | 5.657201e-49 | -8.615850e-47 |
| Msa0003350 | Msa0682160 | 0.800231 | 1.587836e-48 | -8.615850e-47 |
| Msa0003350 | Msa0873880 | 0.800682 | 1.285481e-48 | -8.615850e-47 |
| Msa0003350 | Msa0873940 | 0.820078 | 8.295923e-53 | -8.615850e-47 |
| Msa0003350 | Msa0946010 | 0.808581 | 2.886610e-50 | -8.615850e-47 |
| Msa0003350 | Msa0975950 | 0.809499 | 1.835746e-50 | -8.615850e-47 |
| Msa0003350 | Msa1041250 | 0.804562 | 2.035276e-49 | -8.615850e-47 |
| Msa0003350 | Msa1165670 | 0.816692 | 4.850650e-52 | -8.615850e-47 |
| Msa0003350 | Msa1361040 | 0.802592 | 5.215519e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003350 | MtrunA17_Chr1g0155611 | 98.366 | 306 | 5 | 0 | 1 | 306 | 42 | 347 | 0.0 | 621 |
| Msa0003350 | MtrunA17_Chr8g0372601 | 63.399 | 306 | 111 | 1 | 1 | 306 | 26 | 330 | 5.95e-141 | 400 |
| Msa0003350 | MtrunA17_Chr5g0404721 | 61.921 | 302 | 114 | 1 | 5 | 306 | 30 | 330 | 1.59e-138 | 394 |
| Msa0003350 | MtrunA17_Chr3g0114451 | 52.649 | 302 | 134 | 2 | 5 | 306 | 26 | 318 | 1.29e-110 | 323 |
| Msa0003350 | MtrunA17_Chr5g0400331 | 52.288 | 306 | 142 | 2 | 5 | 306 | 26 | 331 | 1.89e-108 | 318 |
| Msa0003350 | MtrunA17_Chr3g0106921 | 52.459 | 305 | 133 | 4 | 5 | 306 | 25 | 320 | 1.90e-108 | 318 |
| Msa0003350 | MtrunA17_Chr4g0068621 | 51.656 | 302 | 143 | 2 | 5 | 306 | 38 | 336 | 4.43e-108 | 317 |
| Msa0003350 | MtrunA17_Chr5g0432441 | 52.614 | 306 | 132 | 4 | 5 | 306 | 30 | 326 | 3.21e-107 | 315 |
| Msa0003350 | MtrunA17_Chr4g0013171 | 51.148 | 305 | 138 | 4 | 4 | 306 | 26 | 321 | 7.26e-107 | 314 |
| Msa0003350 | MtrunA17_Chr3g0129051 | 50.000 | 304 | 141 | 3 | 5 | 306 | 28 | 322 | 1.05e-105 | 311 |
| Msa0003350 | MtrunA17_Chr2g0320061 | 51.325 | 302 | 139 | 2 | 5 | 306 | 25 | 318 | 3.05e-105 | 310 |
| Msa0003350 | MtrunA17_Chr2g0320051 | 51.325 | 302 | 139 | 2 | 5 | 306 | 25 | 318 | 4.52e-105 | 309 |
| Msa0003350 | MtrunA17_Chr7g0244461 | 47.059 | 306 | 153 | 2 | 1 | 306 | 16 | 312 | 5.07e-104 | 306 |
| Msa0003350 | MtrunA17_Chr2g0320071 | 50.000 | 302 | 142 | 2 | 5 | 306 | 25 | 317 | 1.33e-103 | 305 |
| Msa0003350 | MtrunA17_Chr4g0013181 | 51.333 | 300 | 135 | 4 | 9 | 306 | 63 | 353 | 4.23e-103 | 305 |
| Msa0003350 | MtrunA17_Chr2g0292241 | 48.675 | 302 | 155 | 0 | 5 | 306 | 29 | 330 | 5.15e-103 | 305 |
| Msa0003350 | MtrunA17_Chr2g0320031 | 49.669 | 302 | 144 | 2 | 5 | 306 | 26 | 319 | 5.41e-103 | 304 |
| Msa0003350 | MtrunA17_Chr2g0292091 | 48.344 | 302 | 156 | 0 | 5 | 306 | 24 | 325 | 9.31e-103 | 304 |
| Msa0003350 | MtrunA17_Chr1g0175561 | 48.515 | 303 | 155 | 1 | 5 | 306 | 24 | 326 | 1.05e-102 | 303 |
| Msa0003350 | MtrunA17_Chr2g0292251 | 49.007 | 302 | 154 | 0 | 5 | 306 | 28 | 329 | 1.39e-102 | 304 |
| Msa0003350 | MtrunA17_Chr4g0013201 | 50.000 | 302 | 142 | 2 | 5 | 306 | 46 | 338 | 3.48e-102 | 302 |
| Msa0003350 | MtrunA17_Chr5g0438021 | 48.684 | 304 | 145 | 3 | 5 | 306 | 31 | 325 | 4.73e-102 | 301 |
| Msa0003350 | MtrunA17_Chr7g0258811 | 47.855 | 303 | 157 | 1 | 5 | 306 | 69 | 371 | 5.04e-102 | 303 |
| Msa0003350 | MtrunA17_Chr2g0292211 | 48.013 | 302 | 157 | 0 | 5 | 306 | 40 | 341 | 7.28e-102 | 302 |
| Msa0003350 | MtrunA17_Chr2g0292151 | 48.675 | 302 | 155 | 0 | 5 | 306 | 29 | 330 | 2.11e-101 | 301 |
| Msa0003350 | MtrunA17_Chr2g0320101 | 49.338 | 302 | 144 | 2 | 5 | 306 | 25 | 317 | 4.71e-101 | 299 |
| Msa0003350 | MtrunA17_Chr2g0292111 | 49.007 | 302 | 154 | 0 | 5 | 306 | 29 | 330 | 5.67e-101 | 300 |
| Msa0003350 | MtrunA17_Chr4g0013191 | 49.508 | 305 | 142 | 4 | 5 | 306 | 45 | 340 | 7.18e-101 | 299 |
| Msa0003350 | MtrunA17_Chr2g0292101 | 48.013 | 302 | 157 | 0 | 5 | 306 | 25 | 326 | 1.21e-100 | 299 |
| Msa0003350 | MtrunA17_Chr2g0292271 | 48.013 | 302 | 157 | 0 | 5 | 306 | 29 | 330 | 2.14e-100 | 298 |
| Msa0003350 | MtrunA17_Chr2g0292291 | 49.013 | 304 | 152 | 2 | 5 | 306 | 30 | 332 | 4.02e-100 | 298 |
| Msa0003350 | MtrunA17_Chr2g0299691 | 48.867 | 309 | 153 | 2 | 1 | 306 | 52 | 358 | 6.75e-100 | 297 |
| Msa0003350 | MtrunA17_Chr2g0292261 | 48.344 | 302 | 156 | 0 | 5 | 306 | 29 | 330 | 9.72e-100 | 296 |
| Msa0003350 | MtrunA17_Chr5g0432351 | 47.869 | 305 | 148 | 4 | 5 | 306 | 25 | 321 | 1.09e-99 | 295 |
| Msa0003350 | MtrunA17_Chr7g0244451 | 49.355 | 310 | 140 | 4 | 1 | 306 | 20 | 316 | 3.12e-99 | 294 |
| Msa0003350 | MtrunA17_Chr3g0129061 | 48.684 | 304 | 145 | 3 | 5 | 306 | 28 | 322 | 5.87e-99 | 293 |
| Msa0003350 | MtrunA17_Chr5g0432341 | 47.541 | 305 | 149 | 4 | 5 | 306 | 25 | 321 | 7.38e-99 | 293 |
| Msa0003350 | MtrunA17_Chr5g0402571 | 50.836 | 299 | 143 | 3 | 9 | 306 | 31 | 326 | 2.14e-98 | 292 |
| Msa0003350 | MtrunA17_Chr2g0320091 | 48.845 | 303 | 145 | 3 | 5 | 306 | 25 | 318 | 3.21e-98 | 291 |
| Msa0003350 | MtrunA17_Chr4g0070951 | 48.026 | 304 | 154 | 2 | 5 | 306 | 28 | 329 | 3.65e-98 | 292 |
| Msa0003350 | MtrunA17_Chr2g0292181 | 46.689 | 302 | 161 | 0 | 5 | 306 | 38 | 339 | 3.85e-98 | 293 |
| Msa0003350 | MtrunA17_Chr2g0291751 | 48.675 | 302 | 155 | 0 | 5 | 306 | 29 | 330 | 5.03e-98 | 292 |
| Msa0003350 | MtrunA17_Chr7g0224371 | 48.993 | 298 | 142 | 3 | 9 | 306 | 35 | 322 | 6.88e-98 | 291 |
| Msa0003350 | MtrunA17_Chr3g0129041 | 49.013 | 304 | 144 | 3 | 5 | 306 | 28 | 322 | 9.64e-98 | 290 |
| Msa0003350 | MtrunA17_Chr5g0432331 | 47.869 | 305 | 148 | 4 | 5 | 306 | 56 | 352 | 3.68e-97 | 290 |
| Msa0003350 | MtrunA17_Chr5g0421411 | 48.070 | 285 | 145 | 3 | 25 | 306 | 1 | 285 | 2.85e-96 | 285 |
| Msa0003350 | MtrunA17_Chr5g0402581 | 50.167 | 299 | 145 | 3 | 9 | 306 | 31 | 326 | 5.11e-96 | 286 |
| Msa0003350 | MtrunA17_Chr4g0038151 | 47.213 | 305 | 150 | 3 | 5 | 306 | 25 | 321 | 1.55e-94 | 282 |
| Msa0003350 | MtrunA17_Chr4g0013721 | 47.351 | 302 | 154 | 3 | 5 | 306 | 100 | 396 | 1.65e-94 | 285 |
| Msa0003350 | MtrunA17_Chr4g0038161 | 47.213 | 305 | 150 | 3 | 5 | 306 | 24 | 320 | 3.73e-94 | 281 |
| Msa0003350 | MtrunA17_Chr1g0213061 | 47.039 | 304 | 150 | 4 | 5 | 306 | 27 | 321 | 4.46e-94 | 281 |
| Msa0003350 | MtrunA17_Chr4g0013821 | 46.230 | 305 | 159 | 3 | 2 | 306 | 25 | 324 | 1.30e-93 | 281 |
| Msa0003350 | MtrunA17_Chr4g0043391 | 46.230 | 305 | 154 | 3 | 5 | 306 | 27 | 324 | 1.95e-93 | 280 |
| Msa0003350 | MtrunA17_Chr3g0106901 | 47.682 | 302 | 149 | 2 | 5 | 306 | 31 | 323 | 1.12e-92 | 278 |
| Msa0003350 | MtrunA17_Chr4g0038171 | 45.902 | 305 | 155 | 3 | 5 | 306 | 24 | 321 | 4.38e-92 | 276 |
| Msa0003350 | MtrunA17_Chr3g0107881 | 45.246 | 305 | 157 | 3 | 5 | 306 | 27 | 324 | 4.83e-91 | 273 |
| Msa0003350 | MtrunA17_Chr1g0204011 | 44.702 | 302 | 161 | 5 | 5 | 306 | 27 | 322 | 5.60e-84 | 255 |
| Msa0003350 | MtrunA17_Chr3g0128061 | 43.478 | 299 | 166 | 3 | 9 | 306 | 30 | 326 | 3.96e-82 | 251 |
| Msa0003350 | MtrunA17_Chr5g0405991 | 44.444 | 306 | 156 | 7 | 4 | 306 | 22 | 316 | 4.25e-82 | 250 |
| Msa0003350 | MtrunA17_Chr6g0477071 | 43.564 | 303 | 158 | 7 | 4 | 306 | 53 | 342 | 8.95e-82 | 250 |
| Msa0003350 | MtrunA17_Chr2g0322861 | 45.333 | 300 | 158 | 5 | 9 | 306 | 91 | 386 | 4.66e-81 | 250 |
| Msa0003350 | MtrunA17_Chr4g0076211 | 44.631 | 298 | 154 | 6 | 10 | 306 | 46 | 333 | 1.79e-80 | 247 |
| Msa0003350 | MtrunA17_Chr8g0371381 | 42.951 | 305 | 160 | 7 | 5 | 306 | 26 | 319 | 4.12e-80 | 245 |
| Msa0003350 | MtrunA17_Chr1g0194151 | 43.046 | 302 | 166 | 3 | 9 | 306 | 34 | 333 | 5.01e-79 | 243 |
| Msa0003350 | MtrunA17_Chr1g0188431 | 41.391 | 302 | 164 | 6 | 5 | 306 | 39 | 327 | 2.22e-78 | 241 |
| Msa0003350 | MtrunA17_Chr2g0279041 | 43.377 | 302 | 160 | 5 | 9 | 306 | 31 | 325 | 3.22e-78 | 241 |
| Msa0003350 | MtrunA17_Chr4g0024121 | 42.244 | 303 | 171 | 3 | 5 | 306 | 27 | 326 | 4.16e-78 | 241 |
| Msa0003350 | MtrunA17_Chr1g0194271 | 41.139 | 316 | 173 | 4 | 2 | 306 | 27 | 340 | 9.87e-77 | 238 |
| Msa0003350 | MtrunA17_Chr5g0432401 | 41.776 | 304 | 127 | 4 | 5 | 305 | 29 | 285 | 1.90e-76 | 235 |
| Msa0003350 | MtrunA17_Chr1g0164891 | 42.053 | 302 | 169 | 5 | 9 | 306 | 93 | 392 | 2.15e-76 | 238 |
| Msa0003350 | MtrunA17_Chr1g0157051 | 42.484 | 306 | 167 | 6 | 1 | 305 | 20 | 317 | 4.33e-76 | 235 |
| Msa0003350 | MtrunA17_Chr7g0254201 | 42.953 | 298 | 161 | 6 | 9 | 306 | 24 | 312 | 4.70e-76 | 235 |
| Msa0003350 | MtrunA17_Chr7g0268501 | 42.384 | 302 | 168 | 4 | 5 | 306 | 25 | 320 | 5.86e-75 | 232 |
| Msa0003350 | MtrunA17_Chr7g0268521 | 42.384 | 302 | 168 | 4 | 5 | 306 | 25 | 320 | 5.86e-75 | 232 |
| Msa0003350 | MtrunA17_Chr6g0460711 | 43.000 | 300 | 159 | 6 | 9 | 306 | 25 | 314 | 1.16e-74 | 231 |
| Msa0003350 | MtrunA17_Chr2g0296621 | 42.904 | 303 | 161 | 8 | 5 | 306 | 50 | 341 | 2.82e-74 | 231 |
| Msa0003350 | MtrunA17_Chr7g0254231 | 41.391 | 302 | 165 | 6 | 5 | 306 | 22 | 311 | 1.13e-71 | 224 |
| Msa0003350 | MtrunA17_Chr4g0075241 | 39.297 | 313 | 178 | 5 | 1 | 306 | 20 | 327 | 2.39e-71 | 223 |
| Msa0003350 | MtrunA17_Chr6g0467161 | 42.157 | 306 | 161 | 6 | 4 | 306 | 44 | 336 | 3.79e-71 | 223 |
| Msa0003350 | MtrunA17_Chr4g0063671 | 42.671 | 307 | 164 | 5 | 5 | 306 | 21 | 320 | 2.31e-70 | 221 |
| Msa0003350 | MtrunA17_Chr7g0225221 | 38.511 | 309 | 170 | 4 | 5 | 306 | 25 | 320 | 4.37e-70 | 220 |
| Msa0003350 | MtrunA17_Chr4g0046131 | 40.264 | 303 | 174 | 5 | 5 | 302 | 42 | 342 | 1.33e-69 | 219 |
| Msa0003350 | MtrunA17_Chr2g0316791 | 40.541 | 333 | 163 | 7 | 5 | 305 | 76 | 405 | 1.70e-67 | 216 |
| Msa0003350 | MtrunA17_Chr2g0316831 | 40.240 | 333 | 164 | 7 | 5 | 305 | 112 | 441 | 4.33e-66 | 213 |
| Msa0003350 | MtrunA17_Chr6g0467121 | 40.984 | 305 | 164 | 7 | 4 | 306 | 73 | 363 | 7.11e-66 | 211 |
| Msa0003350 | MtrunA17_Chr2g0316481 | 39.940 | 333 | 165 | 7 | 5 | 305 | 76 | 405 | 9.99e-66 | 211 |
| Msa0003350 | MtrunA17_Chr2g0316191 | 39.820 | 334 | 165 | 7 | 5 | 305 | 76 | 406 | 5.12e-65 | 209 |
| Msa0003350 | MtrunA17_Chr2g0311251 | 39.339 | 333 | 166 | 7 | 5 | 305 | 11 | 339 | 1.63e-64 | 206 |
| Msa0003350 | MtrunA17_Chr6g0467251 | 40.000 | 300 | 169 | 5 | 4 | 302 | 35 | 324 | 1.49e-63 | 204 |
| Msa0003350 | MtrunA17_Chr1g0148021 | 36.721 | 305 | 187 | 4 | 5 | 306 | 27 | 328 | 4.02e-63 | 202 |
| Msa0003350 | MtrunA17_Chr5g0401431 | 36.213 | 301 | 187 | 3 | 5 | 302 | 27 | 325 | 5.44e-63 | 202 |
| Msa0003350 | MtrunA17_Chr2g0329641 | 36.482 | 307 | 183 | 4 | 5 | 306 | 36 | 335 | 7.49e-63 | 202 |
| Msa0003350 | MtrunA17_Chr8g0364291 | 38.361 | 305 | 182 | 5 | 5 | 306 | 23 | 324 | 1.49e-61 | 198 |
| Msa0003350 | MtrunA17_Chr3g0136751 | 38.816 | 304 | 178 | 4 | 5 | 306 | 25 | 322 | 2.67e-61 | 197 |
| Msa0003350 | MtrunA17_Chr4g0053871 | 37.542 | 301 | 178 | 4 | 5 | 302 | 27 | 320 | 2.68e-61 | 197 |
| Msa0003350 | MtrunA17_Chr1g0181431 | 39.016 | 305 | 175 | 4 | 5 | 306 | 27 | 323 | 5.46e-61 | 197 |
| Msa0003350 | MtrunA17_Chr4g0072091 | 37.582 | 306 | 181 | 5 | 5 | 306 | 24 | 323 | 3.70e-60 | 194 |
| Msa0003350 | MtrunA17_Chr2g0311241 | 35.561 | 374 | 164 | 7 | 5 | 305 | 60 | 429 | 6.44e-60 | 197 |
| Msa0003350 | MtrunA17_Chr1g0181511 | 38.206 | 301 | 175 | 4 | 9 | 306 | 31 | 323 | 1.04e-59 | 193 |
| Msa0003350 | MtrunA17_Chr2g0278671 | 40.514 | 311 | 157 | 8 | 9 | 306 | 28 | 323 | 1.14e-59 | 193 |
| Msa0003350 | MtrunA17_Chr1g0197411 | 36.721 | 305 | 188 | 4 | 5 | 306 | 28 | 330 | 1.43e-59 | 193 |
| Msa0003350 | MtrunA17_Chr2g0279061 | 41.603 | 262 | 142 | 5 | 49 | 306 | 12 | 266 | 1.77e-59 | 191 |
| Msa0003350 | MtrunA17_Chr1g0181481 | 38.870 | 301 | 173 | 4 | 9 | 306 | 31 | 323 | 6.10e-58 | 189 |
| Msa0003350 | MtrunA17_Chr5g0413051 | 37.829 | 304 | 180 | 7 | 9 | 306 | 77 | 377 | 1.35e-57 | 189 |
| Msa0003350 | MtrunA17_Chr3g0114461 | 47.208 | 197 | 94 | 3 | 111 | 306 | 5 | 192 | 4.29e-57 | 182 |
| Msa0003350 | MtrunA17_Chr6g0451571 | 35.294 | 306 | 189 | 6 | 5 | 306 | 34 | 334 | 4.99e-56 | 184 |
| Msa0003350 | MtrunA17_Chr4g0074851 | 35.948 | 306 | 177 | 5 | 4 | 302 | 31 | 324 | 2.83e-53 | 177 |
| Msa0003350 | MtrunA17_Chr4g0004591 | 34.877 | 324 | 149 | 4 | 2 | 305 | 74 | 355 | 9.70e-51 | 171 |
| Msa0003350 | MtrunA17_Chr2g0292281 | 43.128 | 211 | 106 | 2 | 98 | 306 | 18 | 216 | 3.78e-50 | 166 |
| Msa0003350 | MtrunA17_Chr2g0316811 | 39.316 | 234 | 124 | 3 | 5 | 221 | 50 | 282 | 3.01e-46 | 159 |
| Msa0003350 | MtrunA17_Chr2g0316141 | 35.069 | 288 | 133 | 7 | 51 | 305 | 11 | 277 | 1.10e-39 | 140 |
| Msa0003350 | MtrunA17_Chr2g0316181 | 35.069 | 288 | 133 | 7 | 51 | 305 | 11 | 277 | 1.10e-39 | 140 |
| Msa0003350 | MtrunA17_Chr3g0114491 | 58.716 | 109 | 45 | 0 | 5 | 113 | 18 | 126 | 1.12e-39 | 135 |
| Msa0003350 | MtrunA17_Chr3g0104101 | 46.099 | 141 | 73 | 3 | 169 | 306 | 9 | 149 | 1.20e-34 | 123 |
| Msa0003350 | MtrunA17_Chr5g0432321 | 45.161 | 124 | 60 | 2 | 126 | 249 | 17 | 132 | 2.05e-29 | 108 |
| Msa0003350 | MtrunA17_Chr1g0181501 | 37.245 | 196 | 108 | 5 | 116 | 306 | 4 | 189 | 2.43e-28 | 108 |
| Msa0003350 | MtrunA17_Chr6g0468731 | 63.380 | 71 | 22 | 2 | 44 | 114 | 22 | 88 | 2.08e-22 | 89.4 |
| Msa0003350 | MtrunA17_Chr7g0254181 | 45.714 | 105 | 53 | 2 | 67 | 171 | 22 | 122 | 6.33e-22 | 90.1 |
| Msa0003350 | MtrunA17_Chr5g0432361 | 44.086 | 93 | 51 | 1 | 213 | 305 | 17 | 108 | 1.29e-19 | 82.4 |
| Msa0003350 | MtrunA17_Chr3g0137751 | 28.839 | 267 | 116 | 9 | 36 | 287 | 105 | 312 | 3.75e-18 | 83.2 |
| Msa0003350 | MtrunA17_Chr1g0181491 | 41.905 | 105 | 59 | 2 | 5 | 109 | 12 | 114 | 4.30e-18 | 79.7 |
| Msa0003350 | MtrunA17_Chr2g0316771 | 32.432 | 185 | 91 | 4 | 152 | 305 | 4 | 185 | 4.39e-18 | 80.5 |
| Msa0003350 | MtrunA17_Chr4g0013811 | 49.333 | 75 | 38 | 0 | 115 | 189 | 5 | 79 | 7.87e-18 | 76.6 |
| Msa0003350 | MtrunA17_Chr4g0037131 | 28.938 | 273 | 131 | 9 | 27 | 288 | 23 | 243 | 1.55e-16 | 78.2 |
| Msa0003350 | MtrunA17_Chr7g0254171 | 44.578 | 83 | 45 | 1 | 48 | 130 | 1 | 82 | 7.56e-15 | 70.5 |
| Msa0003350 | MtrunA17_Chr7g0268491 | 43.023 | 86 | 46 | 2 | 221 | 306 | 15 | 97 | 1.15e-14 | 68.6 |
| Msa0003350 | MtrunA17_Chr1g0196191 | 39.024 | 82 | 45 | 2 | 47 | 124 | 27 | 107 | 5.23e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003350 | AT1G44970.1 | 77.152 | 302 | 69 | 0 | 5 | 306 | 45 | 346 | 4.06e-172 | 480 |
| Msa0003350 | AT4G36430.1 | 60.261 | 307 | 119 | 2 | 2 | 306 | 25 | 330 | 1.08e-139 | 398 |
| Msa0003350 | AT5G66390.1 | 61.921 | 302 | 114 | 1 | 5 | 306 | 33 | 333 | 1.71e-139 | 397 |
| Msa0003350 | AT2G18150.1 | 60.596 | 302 | 118 | 1 | 5 | 306 | 36 | 336 | 8.03e-139 | 396 |
| Msa0003350 | AT2G18140.1 | 56.954 | 302 | 129 | 1 | 5 | 306 | 35 | 335 | 4.70e-129 | 371 |
| Msa0003350 | AT3G50990.1 | 57.285 | 302 | 128 | 1 | 5 | 306 | 41 | 341 | 3.52e-125 | 361 |
| Msa0003350 | AT5G06720.1 | 50.331 | 302 | 150 | 0 | 5 | 306 | 32 | 333 | 6.64e-111 | 325 |
| Msa0003350 | AT2G35380.1 | 53.226 | 310 | 125 | 4 | 9 | 306 | 34 | 335 | 1.05e-105 | 311 |
| Msa0003350 | AT2G38390.1 | 50.165 | 303 | 150 | 1 | 5 | 306 | 31 | 333 | 1.34e-104 | 309 |
| Msa0003350 | AT5G06730.1 | 47.351 | 302 | 159 | 0 | 5 | 306 | 33 | 334 | 2.18e-104 | 309 |
| Msa0003350 | AT5G05340.1 | 46.711 | 304 | 151 | 3 | 5 | 306 | 30 | 324 | 1.06e-100 | 298 |
| Msa0003350 | AT2G38380.1 | 49.505 | 303 | 152 | 1 | 5 | 306 | 31 | 333 | 1.15e-100 | 299 |
| Msa0003350 | AT4G16270.1 | 50.162 | 309 | 141 | 7 | 1 | 306 | 50 | 348 | 3.98e-100 | 298 |
| Msa0003350 | AT5G58400.1 | 47.869 | 305 | 147 | 4 | 5 | 306 | 30 | 325 | 1.18e-99 | 296 |
| Msa0003350 | AT4G08780.1 | 48.026 | 304 | 156 | 2 | 5 | 306 | 24 | 327 | 1.44e-99 | 296 |
| Msa0003350 | AT5G19890.1 | 49.671 | 304 | 145 | 4 | 5 | 306 | 30 | 327 | 2.64e-99 | 295 |
| Msa0003350 | AT4G08770.1 | 48.026 | 304 | 156 | 2 | 5 | 306 | 24 | 327 | 3.29e-99 | 295 |
| Msa0003350 | AT2G22420.1 | 48.013 | 302 | 152 | 3 | 5 | 306 | 23 | 319 | 5.12e-99 | 294 |
| Msa0003350 | AT1G49570.1 | 51.163 | 301 | 142 | 3 | 5 | 302 | 48 | 346 | 1.79e-98 | 294 |
| Msa0003350 | AT3G32980.1 | 46.711 | 304 | 160 | 2 | 5 | 306 | 31 | 334 | 1.39e-95 | 286 |
| Msa0003350 | AT5G58390.1 | 50.164 | 305 | 140 | 4 | 5 | 306 | 21 | 316 | 2.65e-95 | 285 |
| Msa0003350 | AT3G49110.1 | 47.368 | 304 | 158 | 2 | 5 | 306 | 33 | 336 | 3.98e-95 | 285 |
| Msa0003350 | AT1G14550.1 | 48.185 | 303 | 149 | 3 | 5 | 306 | 26 | 321 | 1.63e-93 | 280 |
| Msa0003350 | AT3G49120.1 | 46.711 | 304 | 160 | 2 | 5 | 306 | 32 | 335 | 2.47e-93 | 281 |
| Msa0003350 | AT1G68850.1 | 43.791 | 306 | 168 | 3 | 5 | 306 | 30 | 335 | 3.54e-92 | 277 |
| Msa0003350 | AT1G14540.1 | 45.033 | 302 | 159 | 2 | 5 | 306 | 21 | 315 | 9.96e-90 | 270 |
| Msa0003350 | AT3G03670.1 | 44.816 | 299 | 162 | 2 | 8 | 306 | 26 | 321 | 5.01e-88 | 266 |
| Msa0003350 | AT5G19880.1 | 43.934 | 305 | 168 | 2 | 5 | 306 | 25 | 329 | 2.27e-86 | 262 |
| Msa0003350 | AT5G51890.1 | 44.262 | 305 | 161 | 6 | 4 | 306 | 25 | 322 | 2.12e-83 | 254 |
| Msa0003350 | AT5G42180.1 | 44.884 | 303 | 158 | 6 | 4 | 305 | 22 | 316 | 1.90e-82 | 252 |
| Msa0003350 | AT5G17820.1 | 42.282 | 298 | 160 | 5 | 9 | 306 | 28 | 313 | 4.90e-82 | 251 |
| Msa0003350 | AT5G64120.1 | 43.289 | 298 | 161 | 5 | 9 | 306 | 39 | 328 | 2.86e-81 | 249 |
| Msa0003350 | AT1G05260.1 | 44.224 | 303 | 165 | 4 | 5 | 306 | 26 | 325 | 3.00e-81 | 249 |
| Msa0003350 | AT5G17820.2 | 42.282 | 298 | 160 | 5 | 9 | 306 | 81 | 366 | 8.08e-81 | 249 |
| Msa0003350 | AT1G71695.1 | 44.118 | 306 | 159 | 6 | 4 | 306 | 43 | 339 | 3.30e-80 | 247 |
| Msa0003350 | AT2G35380.2 | 51.373 | 255 | 104 | 4 | 64 | 306 | 1 | 247 | 4.16e-80 | 243 |
| Msa0003350 | AT4G33420.1 | 43.894 | 303 | 157 | 6 | 4 | 306 | 36 | 325 | 1.29e-78 | 242 |
| Msa0003350 | AT4G33420.2 | 43.894 | 303 | 157 | 6 | 4 | 306 | 83 | 372 | 3.86e-78 | 243 |
| Msa0003350 | AT4G11290.1 | 43.333 | 300 | 166 | 3 | 9 | 306 | 29 | 326 | 1.04e-77 | 240 |
| Msa0003350 | AT3G21770.1 | 42.857 | 301 | 164 | 5 | 5 | 302 | 29 | 324 | 3.37e-77 | 239 |
| Msa0003350 | AT5G15180.1 | 43.092 | 304 | 167 | 5 | 4 | 306 | 31 | 329 | 7.63e-76 | 235 |
| Msa0003350 | AT2G41480.1 | 42.574 | 303 | 162 | 5 | 9 | 306 | 33 | 328 | 9.77e-73 | 227 |
| Msa0003350 | AT1G05240.1 | 41.077 | 297 | 167 | 5 | 9 | 302 | 30 | 321 | 1.07e-72 | 227 |
| Msa0003350 | AT1G05250.1 | 41.077 | 297 | 167 | 5 | 9 | 302 | 30 | 321 | 1.07e-72 | 227 |
| Msa0003350 | AT5G39580.1 | 41.806 | 299 | 165 | 6 | 9 | 306 | 29 | 319 | 1.39e-71 | 224 |
| Msa0003350 | AT4G26010.1 | 41.137 | 299 | 160 | 6 | 9 | 306 | 26 | 309 | 1.15e-70 | 221 |
| Msa0003350 | AT3G01190.1 | 40.984 | 305 | 174 | 5 | 2 | 306 | 23 | 321 | 1.47e-70 | 221 |
| Msa0003350 | AT4G26010.2 | 41.137 | 299 | 160 | 6 | 9 | 306 | 54 | 337 | 1.93e-70 | 222 |
| Msa0003350 | AT4G25980.1 | 40.924 | 303 | 168 | 5 | 9 | 306 | 30 | 326 | 1.33e-69 | 219 |
| Msa0003350 | AT2G18980.1 | 40.000 | 305 | 174 | 4 | 5 | 306 | 25 | 323 | 1.88e-69 | 219 |
| Msa0003350 | AT2G39040.1 | 42.395 | 309 | 167 | 6 | 5 | 306 | 46 | 350 | 4.46e-69 | 219 |
| Msa0003350 | AT4G30170.1 | 39.032 | 310 | 178 | 5 | 1 | 306 | 23 | 325 | 9.53e-69 | 217 |
| Msa0003350 | AT5G64100.1 | 40.199 | 301 | 167 | 7 | 9 | 306 | 41 | 331 | 3.68e-68 | 216 |
| Msa0003350 | AT4G33870.1 | 36.607 | 336 | 175 | 4 | 5 | 305 | 68 | 400 | 5.11e-68 | 218 |
| Msa0003350 | AT5G64110.1 | 41.528 | 301 | 165 | 5 | 9 | 306 | 38 | 330 | 6.98e-68 | 215 |
| Msa0003350 | AT1G30870.1 | 42.295 | 305 | 163 | 7 | 5 | 306 | 51 | 345 | 7.39e-68 | 215 |
| Msa0003350 | AT4G31760.1 | 40.065 | 307 | 176 | 3 | 2 | 306 | 26 | 326 | 1.55e-66 | 211 |
| Msa0003350 | AT4G37530.1 | 38.889 | 306 | 180 | 4 | 5 | 306 | 27 | 329 | 1.85e-65 | 209 |
| Msa0003350 | AT4G37520.1 | 36.877 | 301 | 185 | 3 | 5 | 302 | 27 | 325 | 1.31e-63 | 204 |
| Msa0003350 | AT3G49960.1 | 36.066 | 305 | 190 | 3 | 5 | 306 | 27 | 329 | 5.65e-63 | 202 |
| Msa0003350 | AT5G40150.1 | 40.132 | 304 | 173 | 5 | 5 | 306 | 32 | 328 | 9.02e-63 | 202 |
| Msa0003350 | AT2G34060.1 | 38.361 | 305 | 179 | 7 | 5 | 303 | 42 | 343 | 1.57e-62 | 202 |
| Msa0003350 | AT1G77100.1 | 39.274 | 303 | 168 | 6 | 9 | 306 | 28 | 319 | 4.41e-62 | 199 |
| Msa0003350 | AT5G47000.1 | 38.312 | 308 | 174 | 7 | 5 | 306 | 33 | 330 | 4.86e-62 | 200 |
| Msa0003350 | AT4G37520.2 | 36.545 | 301 | 183 | 4 | 5 | 302 | 27 | 322 | 6.18e-62 | 199 |
| Msa0003350 | AT5G67400.1 | 36.393 | 305 | 189 | 3 | 5 | 306 | 27 | 329 | 5.02e-61 | 197 |
| Msa0003350 | AT2G24800.1 | 38.689 | 305 | 178 | 5 | 5 | 306 | 31 | 329 | 9.56e-60 | 194 |
| Msa0003350 | AT1G24110.1 | 37.582 | 306 | 182 | 7 | 5 | 306 | 22 | 322 | 4.51e-59 | 192 |
| Msa0003350 | AT3G28200.1 | 37.171 | 304 | 181 | 4 | 5 | 306 | 21 | 316 | 4.72e-59 | 192 |
| Msa0003350 | AT5G14130.1 | 35.314 | 303 | 191 | 4 | 5 | 306 | 32 | 330 | 8.16e-59 | 191 |
| Msa0003350 | AT4G17690.1 | 37.049 | 305 | 181 | 5 | 5 | 306 | 26 | 322 | 1.20e-58 | 191 |
| Msa0003350 | AT1G34510.1 | 37.458 | 299 | 171 | 6 | 9 | 306 | 26 | 309 | 1.38e-58 | 190 |
| Msa0003350 | AT5G14130.2 | 35.314 | 303 | 191 | 4 | 5 | 306 | 73 | 371 | 2.19e-58 | 192 |
| Msa0003350 | AT5G22410.1 | 38.000 | 300 | 172 | 8 | 9 | 303 | 32 | 322 | 2.20e-58 | 191 |
| Msa0003350 | AT2G43480.1 | 35.922 | 309 | 183 | 6 | 5 | 306 | 35 | 335 | 4.15e-58 | 190 |
| Msa0003350 | AT3G17070.1 | 36.624 | 314 | 177 | 7 | 4 | 306 | 37 | 339 | 6.11e-58 | 189 |
| Msa0003350 | AT2G37130.2 | 38.079 | 302 | 175 | 5 | 9 | 306 | 3 | 296 | 2.42e-57 | 187 |
| Msa0003350 | AT2G37130.1 | 37.908 | 306 | 178 | 5 | 5 | 306 | 30 | 327 | 5.39e-57 | 187 |
| Msa0003350 | AT5G24070.1 | 34.177 | 316 | 187 | 6 | 4 | 306 | 28 | 335 | 1.20e-56 | 186 |
| Msa0003350 | AT4G21960.1 | 37.742 | 310 | 174 | 5 | 4 | 306 | 30 | 327 | 3.62e-56 | 185 |
| Msa0003350 | AT4G37530.2 | 38.281 | 256 | 155 | 2 | 2 | 254 | 24 | 279 | 1.54e-55 | 182 |
| Msa0003350 | AT4G25980.2 | 48.171 | 164 | 81 | 3 | 9 | 172 | 75 | 234 | 6.43e-44 | 152 |
| Msa0003350 | AT3G17070.2 | 35.055 | 271 | 153 | 8 | 47 | 306 | 18 | 276 | 1.64e-43 | 150 |
| Msa0003350 | AT5G39580.2 | 44.848 | 165 | 86 | 3 | 9 | 173 | 29 | 188 | 7.20e-39 | 137 |
| Msa0003350 | AT2G24800.2 | 38.119 | 202 | 110 | 3 | 5 | 206 | 31 | 217 | 3.00e-36 | 130 |
| Msa0003350 | AT4G32320.1 | 30.337 | 267 | 112 | 8 | 36 | 287 | 114 | 321 | 4.57e-20 | 89.4 |
| Msa0003350 | AT4G35970.1 | 30.996 | 271 | 119 | 12 | 36 | 295 | 30 | 243 | 1.79e-17 | 81.3 |
| Msa0003350 | AT3G42570.1 | 36.082 | 97 | 61 | 1 | 77 | 172 | 53 | 149 | 3.29e-14 | 69.3 |
| Msa0003350 | AT4G08390.3 | 26.766 | 269 | 143 | 10 | 39 | 288 | 126 | 359 | 7.91e-13 | 68.6 |
| Msa0003350 | AT4G08390.2 | 26.766 | 269 | 143 | 10 | 39 | 288 | 127 | 360 | 8.09e-13 | 68.6 |
| Msa0003350 | AT4G08390.5 | 26.766 | 269 | 143 | 10 | 39 | 288 | 127 | 360 | 8.09e-13 | 68.6 |
| Msa0003350 | AT4G08390.1 | 26.766 | 269 | 143 | 10 | 39 | 288 | 127 | 360 | 8.09e-13 | 68.6 |
| Msa0003350 | AT1G77490.2 | 25.954 | 262 | 154 | 10 | 39 | 288 | 106 | 339 | 2.94e-11 | 64.3 |
| Msa0003350 | AT1G77490.1 | 25.954 | 262 | 154 | 10 | 39 | 288 | 106 | 339 | 3.20e-11 | 63.9 |
| Msa0003350 | AT4G35970.2 | 33.557 | 149 | 77 | 5 | 36 | 177 | 30 | 163 | 7.90e-11 | 61.2 |
Find 73 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGTTGGTTGTTTCCATTT+TGG | 0.258817 | 1_1:-5871274 | None:intergenic |
| CGTAAGTAAGAGTTTGTAAT+AGG | 0.276037 | 1_1:-5871411 | None:intergenic |
| ACCACTAGAGGAATGTCTTT+TGG | 0.298662 | 1_1:+5869906 | Msa0003350:exon |
| AGGTATTATCAAACATTCTT+GGG | 0.320019 | 1_1:-5871391 | None:intergenic |
| CAAAGACTATACAACCAAAA+TGG | 0.350393 | 1_1:+5871260 | Msa0003350:CDS |
| ATTATTTCTCCCTTGGACTT+TGG | 0.353163 | 1_1:+5871365 | Msa0003350:CDS |
| TTTGAGTCTCTCCTTCCTAA+TGG | 0.355118 | 1_1:-5870954 | None:intergenic |
| TATTACAAACTCTTACTTAC+GGG | 0.362436 | 1_1:+5871413 | Msa0003350:CDS |
| TAGGTATTATCAAACATTCT+TGG | 0.367240 | 1_1:-5871392 | None:intergenic |
| GCCTTGTCTATGATCAAGTT+GGG | 0.368870 | 1_1:+5871545 | Msa0003350:CDS |
| TTTGGCTGGGGTGGTCATCA+TGG | 0.381646 | 1_1:+5869879 | Msa0003350:five_prime_UTR |
| AACAGAGTGGAGGACCTAAC+TGG | 0.382219 | 1_1:+5870925 | Msa0003350:intron |
| AGACCTTCAATAGTTGCATT+TGG | 0.390969 | 1_1:-5871017 | None:intergenic |
| CCACCAAATGCAACTATTGA+AGG | 0.405803 | 1_1:+5871014 | Msa0003350:CDS |
| GTAGACCTTGTTGCCCTCTC+AGG | 0.409416 | 1_1:+5871074 | Msa0003350:CDS |
| AAACTCTTACTTACGGGAAA+AGG | 0.413427 | 1_1:+5871419 | Msa0003350:CDS |
| TATTGTTGCCCTTGCTGCTA+GGG | 0.421519 | 1_1:+5870623 | Msa0003350:CDS |
| ATATTGTTGCCCTTGCTGCT+AGG | 0.427899 | 1_1:+5870622 | Msa0003350:CDS |
| TGACAACATTATTTCTCCCT+TGG | 0.436794 | 1_1:+5871358 | Msa0003350:CDS |
| CTATTACAAACTCTTACTTA+CGG | 0.441120 | 1_1:+5871412 | Msa0003350:CDS |
| ATGTTGTCACCACCTGATCT+TGG | 0.448426 | 1_1:-5871344 | None:intergenic |
| TGATGAAATCAAATCTAAGT+TGG | 0.449163 | 1_1:+5870566 | Msa0003350:CDS |
| AAATCAATGTGCCCAAGATC+AGG | 0.449302 | 1_1:+5871332 | Msa0003350:CDS |
| GGGAACCTTCGTCCTCTCAC+TGG | 0.462709 | 1_1:+5871566 | Msa0003350:CDS |
| CCTTCAATAGTTGCATTTGG+TGG | 0.468155 | 1_1:-5871014 | None:intergenic |
| CCTAATGGTAGCTCCCAGTT+AGG | 0.468206 | 1_1:-5870939 | None:intergenic |
| TGCCTTGTCTATGATCAAGT+TGG | 0.474042 | 1_1:+5871544 | Msa0003350:CDS |
| AATGTAGGTGCACATACAAT+TGG | 0.478313 | 1_1:+5871212 | Msa0003350:intron |
| TGTTGTCACCACCTGATCTT+GGG | 0.480354 | 1_1:-5871343 | None:intergenic |
| TTTCTAGATTCGAATCTGGT+TGG | 0.488001 | 1_1:-5871289 | None:intergenic |
| CTTCAATAGTTGCATTTGGT+GGG | 0.492398 | 1_1:-5871013 | None:intergenic |
| CCTAACTGGGAGCTACCATT+AGG | 0.493079 | 1_1:+5870939 | Msa0003350:CDS |
| TGACATTGTCATGTCAGTCT+TGG | 0.493447 | 1_1:+5869971 | Msa0003350:CDS |
| TCAATAGTTGCATTTGGTGG+GGG | 0.508864 | 1_1:-5871011 | None:intergenic |
| TTCAATAGTTGCATTTGGTG+GGG | 0.518047 | 1_1:-5871012 | None:intergenic |
| TCAGATGAAGTGCTTCTCAC+AGG | 0.521489 | 1_1:+5871452 | Msa0003350:CDS |
| TGACAATGTCATTAGCTTGA+GGG | 0.524979 | 1_1:-5869959 | None:intergenic |
| CTTCCACGACTGCTTCGTGC+AGG | 0.531991 | 1_1:+5870046 | Msa0003350:CDS |
| CATGAAAACTGATAGAATTG+AGG | 0.540572 | 1_1:-5869936 | None:intergenic |
| CCAAAGTGAAAATCATGGAC+AGG | 0.542594 | 1_1:-5869861 | None:intergenic |
| TTTGACAGTTCCACCTGAGA+GGG | 0.544131 | 1_1:-5871087 | None:intergenic |
| CCCAGCCAAAGTGAAAATCA+TGG | 0.562562 | 1_1:-5869866 | None:intergenic |
| ATTGTTGCCCTTGCTGCTAG+GGG | 0.562619 | 1_1:+5870624 | Msa0003350:CDS |
| GGCTGGGGTGGTCATCATGG+TGG | 0.563986 | 1_1:+5869882 | Msa0003350:five_prime_UTR |
| CTTGGAGAAGGCCATTGCTA+AGG | 0.567799 | 1_1:+5869989 | Msa0003350:CDS |
| TGTTAAAGAGACTCGTGACT+TGG | 0.574422 | 1_1:+5871478 | Msa0003350:CDS |
| AATCAGTTCAAAACCTCGAA+CGG | 0.575101 | 1_1:-5870544 | None:intergenic |
| AATCATGGACAGGATGAGCA+TGG | 0.575254 | 1_1:-5869851 | None:intergenic |
| ATCATGGACAGGATGAGCAT+GGG | 0.575357 | 1_1:-5869850 | None:intergenic |
| TCCAAAAGACATTCCTCTAG+TGG | 0.581773 | 1_1:-5869907 | None:intergenic |
| TCTTGGGGAACCAAAGTCCA+AGG | 0.581851 | 1_1:-5871375 | None:intergenic |
| AGTGGATCCCCTAGCAGCAA+GGG | 0.584231 | 1_1:-5870631 | None:intergenic |
| ACAGAGTGGAGGACCTAACT+GGG | 0.585401 | 1_1:+5870926 | Msa0003350:intron |
| CCTTGTCTATGATCAAGTTG+GGG | 0.590007 | 1_1:+5871546 | Msa0003350:CDS |
| CAGATGAAGTGCTTCTCACA+GGG | 0.590201 | 1_1:+5871453 | Msa0003350:CDS |
| ATGACAATGTCATTAGCTTG+AGG | 0.594591 | 1_1:-5869960 | None:intergenic |
| CAACAAGGTCTACTTCATCA+AGG | 0.594873 | 1_1:-5871064 | None:intergenic |
| CAGTGGATCCCCTAGCAGCA+AGG | 0.596237 | 1_1:-5870632 | None:intergenic |
| GGTATTATCAAACATTCTTG+GGG | 0.598190 | 1_1:-5871390 | None:intergenic |
| CATCATGGTGGAACCACTAG+AGG | 0.601048 | 1_1:+5869894 | Msa0003350:five_prime_UTR |
| TTACCTGCACGAAGCAGTCG+TGG | 0.601762 | 1_1:-5870049 | None:intergenic |
| CCCCAACTTGATCATAGACA+AGG | 0.616517 | 1_1:-5871546 | None:intergenic |
| TGTCATGTCAGTCTTGGAGA+AGG | 0.621040 | 1_1:+5869977 | Msa0003350:CDS |
| ATTTGACAGTTCCACCTGAG+AGG | 0.629550 | 1_1:-5871088 | None:intergenic |
| TATTCTGATATCCTTAGCAA+TGG | 0.632717 | 1_1:-5870000 | None:intergenic |
| ACTGGGAGCTACCATTAGGA+AGG | 0.633174 | 1_1:+5870943 | Msa0003350:CDS |
| TTCCACCTGAGAGGGCAACA+AGG | 0.653435 | 1_1:-5871079 | None:intergenic |
| TCAATGTGCCCAAGATCAGG+TGG | 0.661889 | 1_1:+5871335 | Msa0003350:CDS |
| CTTGGGGAACCAAAGTCCAA+GGG | 0.684174 | 1_1:-5871374 | None:intergenic |
| TCGCCATTAAAACCAGTGAG+AGG | 0.697253 | 1_1:-5871578 | None:intergenic |
| TAAAACCAGTGAGAGGACGA+AGG | 0.705812 | 1_1:-5871571 | None:intergenic |
| AGGTGCACATACAATTGGTG+TGG | 0.734240 | 1_1:+5871217 | Msa0003350:intron |
| TCTGCACATGAGACTGTACG+AGG | 0.748153 | 1_1:-5870600 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAGATTCATTTCATA+AGG | + | chr1_1:5870288-5870307 | Msa0003350:intron | 15.0% |
| !!! | AAACAATTTTTAATAGACTA+TGG | + | chr1_1:5870770-5870789 | Msa0003350:intron | 15.0% |
| !! | TTTCTTTCTGTATATATATA+AGG | + | chr1_1:5870844-5870863 | Msa0003350:intron | 15.0% |
| !! | AAAAATAGATTCATTTCATA+AGG | + | chr1_1:5870288-5870307 | Msa0003350:intron | 15.0% |
| !!! | AAACAATTTTTAATAGACTA+TGG | + | chr1_1:5870770-5870789 | Msa0003350:intron | 15.0% |
| !! | TTTCTTTCTGTATATATATA+AGG | + | chr1_1:5870844-5870863 | Msa0003350:intron | 15.0% |
| !!! | TTCATTTGTTAAATTTGCTT+TGG | + | chr1_1:5870382-5870401 | Msa0003350:intron | 20.0% |
| !! | TATGCAAAGTATATAAAAGT+TGG | - | chr1_1:5870698-5870717 | None:intergenic | 20.0% |
| !! | TTTGCATATGTTATATACTT+AGG | + | chr1_1:5870710-5870729 | Msa0003350:intron | 20.0% |
| !! | TTGCATATGTTATATACTTA+GGG | + | chr1_1:5870711-5870730 | Msa0003350:intron | 20.0% |
| !!! | CTAGAAAAAACATTTTACTT+TGG | + | chr1_1:5871305-5871324 | Msa0003350:CDS | 20.0% |
| !!! | TTCATTTGTTAAATTTGCTT+TGG | + | chr1_1:5870382-5870401 | Msa0003350:intron | 20.0% |
| !! | TATGCAAAGTATATAAAAGT+TGG | - | chr1_1:5870698-5870717 | None:intergenic | 20.0% |
| !! | TTTGCATATGTTATATACTT+AGG | + | chr1_1:5870710-5870729 | Msa0003350:intron | 20.0% |
| !! | TTGCATATGTTATATACTTA+GGG | + | chr1_1:5870711-5870730 | Msa0003350:intron | 20.0% |
| !!! | CTAGAAAAAACATTTTACTT+TGG | + | chr1_1:5871305-5871324 | Msa0003350:CDS | 20.0% |
| !! | CAAATTAAGAAAGTGTATTC+AGG | - | chr1_1:5870247-5870266 | None:intergenic | 25.0% |
| !!! | TTTTTTCTCTCAAAAGTTGT+TGG | - | chr1_1:5870270-5870289 | None:intergenic | 25.0% |
| !!! | TTCATTTTACTTTTAACGAC+AGG | + | chr1_1:5870446-5870465 | Msa0003350:intron | 25.0% |
| !!! | TCATTTTACTTTTAACGACA+GGG | + | chr1_1:5870447-5870466 | Msa0003350:intron | 25.0% |
| !!! | ATTTTTTTCACTGACAATTG+TGG | - | chr1_1:5870505-5870524 | None:intergenic | 25.0% |
| ! | ACAATTGTCAGTGAAAAAAA+TGG | + | chr1_1:5870504-5870523 | Msa0003350:CDS | 25.0% |
| ! | TGATGAAATCAAATCTAAGT+TGG | + | chr1_1:5870566-5870585 | Msa0003350:CDS | 25.0% |
| ! | TGCATATGTTATATACTTAG+GGG | + | chr1_1:5870712-5870731 | Msa0003350:intron | 25.0% |
| ! | AGTTTCAAATTAAGCATGTT+AGG | - | chr1_1:5870887-5870906 | None:intergenic | 25.0% |
| !!! | AATATTCTTTTGAAACAGAG+TGG | + | chr1_1:5870912-5870931 | Msa0003350:intron | 25.0% |
| ! | AGGTATTATCAAACATTCTT+GGG | - | chr1_1:5871394-5871413 | None:intergenic | 25.0% |
| ! | TAGGTATTATCAAACATTCT+TGG | - | chr1_1:5871395-5871414 | None:intergenic | 25.0% |
| ! | CTATTACAAACTCTTACTTA+CGG | + | chr1_1:5871412-5871431 | Msa0003350:CDS | 25.0% |
| ! | TATTACAAACTCTTACTTAC+GGG | + | chr1_1:5871413-5871432 | Msa0003350:CDS | 25.0% |
| !! | CAAATTAAGAAAGTGTATTC+AGG | - | chr1_1:5870247-5870266 | None:intergenic | 25.0% |
| !!! | TTTTTTCTCTCAAAAGTTGT+TGG | - | chr1_1:5870270-5870289 | None:intergenic | 25.0% |
| !!! | TTCATTTTACTTTTAACGAC+AGG | + | chr1_1:5870446-5870465 | Msa0003350:intron | 25.0% |
| !!! | TCATTTTACTTTTAACGACA+GGG | + | chr1_1:5870447-5870466 | Msa0003350:intron | 25.0% |
| !!! | ATTTTTTTCACTGACAATTG+TGG | - | chr1_1:5870505-5870524 | None:intergenic | 25.0% |
| ! | ACAATTGTCAGTGAAAAAAA+TGG | + | chr1_1:5870504-5870523 | Msa0003350:CDS | 25.0% |
| ! | TGATGAAATCAAATCTAAGT+TGG | + | chr1_1:5870566-5870585 | Msa0003350:CDS | 25.0% |
| ! | TGCATATGTTATATACTTAG+GGG | + | chr1_1:5870712-5870731 | Msa0003350:intron | 25.0% |
| ! | AGTTTCAAATTAAGCATGTT+AGG | - | chr1_1:5870887-5870906 | None:intergenic | 25.0% |
| !!! | AATATTCTTTTGAAACAGAG+TGG | + | chr1_1:5870912-5870931 | Msa0003350:intron | 25.0% |
| ! | AGGTATTATCAAACATTCTT+GGG | - | chr1_1:5871394-5871413 | None:intergenic | 25.0% |
| ! | TAGGTATTATCAAACATTCT+TGG | - | chr1_1:5871395-5871414 | None:intergenic | 25.0% |
| ! | CTATTACAAACTCTTACTTA+CGG | + | chr1_1:5871412-5871431 | Msa0003350:CDS | 25.0% |
| ! | TATTACAAACTCTTACTTAC+GGG | + | chr1_1:5871413-5871432 | Msa0003350:CDS | 25.0% |
| CATGAAAACTGATAGAATTG+AGG | - | chr1_1:5869939-5869958 | None:intergenic | 30.0% | |
| TATTCTGATATCCTTAGCAA+TGG | - | chr1_1:5870003-5870022 | None:intergenic | 30.0% | |
| ! | GCAATACATGTTCTAAATAC+AGG | + | chr1_1:5870087-5870106 | Msa0003350:intron | 30.0% |
| ! | TTTAGTCTTTGCATTTGTAC+AGG | + | chr1_1:5870133-5870152 | Msa0003350:intron | 30.0% |
| ATTGTCAGTGAAAAAAATGG+TGG | + | chr1_1:5870507-5870526 | Msa0003350:CDS | 30.0% | |
| !!! | GTTTTTTCTTACAAGAACAG+TGG | - | chr1_1:5870652-5870671 | None:intergenic | 30.0% |
| !!! | TTAACATTTTTCAAGCGTCA+AGG | + | chr1_1:5871041-5871060 | Msa0003350:CDS | 30.0% |
| CAAAGACTATACAACCAAAA+TGG | + | chr1_1:5871260-5871279 | Msa0003350:CDS | 30.0% | |
| !!! | GTTTTTTCTAGATTCGAATC+TGG | - | chr1_1:5871296-5871315 | None:intergenic | 30.0% |
| GGTATTATCAAACATTCTTG+GGG | - | chr1_1:5871393-5871412 | None:intergenic | 30.0% | |
| CGTAAGTAAGAGTTTGTAAT+AGG | - | chr1_1:5871414-5871433 | None:intergenic | 30.0% | |
| CATGAAAACTGATAGAATTG+AGG | - | chr1_1:5869939-5869958 | None:intergenic | 30.0% | |
| TATTCTGATATCCTTAGCAA+TGG | - | chr1_1:5870003-5870022 | None:intergenic | 30.0% | |
| ! | GCAATACATGTTCTAAATAC+AGG | + | chr1_1:5870087-5870106 | Msa0003350:intron | 30.0% |
| ! | TTTAGTCTTTGCATTTGTAC+AGG | + | chr1_1:5870133-5870152 | Msa0003350:intron | 30.0% |
| ATTGTCAGTGAAAAAAATGG+TGG | + | chr1_1:5870507-5870526 | Msa0003350:CDS | 30.0% | |
| !!! | GTTTTTTCTTACAAGAACAG+TGG | - | chr1_1:5870652-5870671 | None:intergenic | 30.0% |
| !!! | TTAACATTTTTCAAGCGTCA+AGG | + | chr1_1:5871041-5871060 | Msa0003350:CDS | 30.0% |
| CAAAGACTATACAACCAAAA+TGG | + | chr1_1:5871260-5871279 | Msa0003350:CDS | 30.0% | |
| !!! | GTTTTTTCTAGATTCGAATC+TGG | - | chr1_1:5871296-5871315 | None:intergenic | 30.0% |
| GGTATTATCAAACATTCTTG+GGG | - | chr1_1:5871393-5871412 | None:intergenic | 30.0% | |
| CGTAAGTAAGAGTTTGTAAT+AGG | - | chr1_1:5871414-5871433 | None:intergenic | 30.0% | |
| ! | TGACAATGTCATTAGCTTGA+GGG | - | chr1_1:5869962-5869981 | None:intergenic | 35.0% |
| ! | ATGACAATGTCATTAGCTTG+AGG | - | chr1_1:5869963-5869982 | None:intergenic | 35.0% |
| ! | TCTTTTGCATGCATATGTCA+AGG | + | chr1_1:5870407-5870426 | Msa0003350:intron | 35.0% |
| AATCAGTTCAAAACCTCGAA+CGG | - | chr1_1:5870547-5870566 | None:intergenic | 35.0% | |
| AGAAAGAAACACACACATCT+AGG | - | chr1_1:5870833-5870852 | None:intergenic | 35.0% | |
| !!! | ATTCTTTTGAAACAGAGTGG+AGG | + | chr1_1:5870915-5870934 | Msa0003350:intron | 35.0% |
| !! | TGTTTTTGTTTGATCCCCTT+AGG | - | chr1_1:5870989-5871008 | None:intergenic | 35.0% |
| ! | TTCAATAGTTGCATTTGGTG+GGG | - | chr1_1:5871015-5871034 | None:intergenic | 35.0% |
| CTTCAATAGTTGCATTTGGT+GGG | - | chr1_1:5871016-5871035 | None:intergenic | 35.0% | |
| AGACCTTCAATAGTTGCATT+TGG | - | chr1_1:5871020-5871039 | None:intergenic | 35.0% | |
| AATGTAGGTGCACATACAAT+TGG | + | chr1_1:5871212-5871231 | Msa0003350:intron | 35.0% | |
| TTTCTAGATTCGAATCTGGT+TGG | - | chr1_1:5871292-5871311 | None:intergenic | 35.0% | |
| ! | TGACAACATTATTTCTCCCT+TGG | + | chr1_1:5871358-5871377 | Msa0003350:CDS | 35.0% |
| ! | ATTATTTCTCCCTTGGACTT+TGG | + | chr1_1:5871365-5871384 | Msa0003350:CDS | 35.0% |
| AAACTCTTACTTACGGGAAA+AGG | + | chr1_1:5871419-5871438 | Msa0003350:CDS | 35.0% | |
| ! | TGACAATGTCATTAGCTTGA+GGG | - | chr1_1:5869962-5869981 | None:intergenic | 35.0% |
| ! | ATGACAATGTCATTAGCTTG+AGG | - | chr1_1:5869963-5869982 | None:intergenic | 35.0% |
| ! | TCTTTTGCATGCATATGTCA+AGG | + | chr1_1:5870407-5870426 | Msa0003350:intron | 35.0% |
| AATCAGTTCAAAACCTCGAA+CGG | - | chr1_1:5870547-5870566 | None:intergenic | 35.0% | |
| AGAAAGAAACACACACATCT+AGG | - | chr1_1:5870833-5870852 | None:intergenic | 35.0% | |
| !!! | ATTCTTTTGAAACAGAGTGG+AGG | + | chr1_1:5870915-5870934 | Msa0003350:intron | 35.0% |
| !! | TGTTTTTGTTTGATCCCCTT+AGG | - | chr1_1:5870989-5871008 | None:intergenic | 35.0% |
| ! | TTCAATAGTTGCATTTGGTG+GGG | - | chr1_1:5871015-5871034 | None:intergenic | 35.0% |
| CTTCAATAGTTGCATTTGGT+GGG | - | chr1_1:5871016-5871035 | None:intergenic | 35.0% | |
| AGACCTTCAATAGTTGCATT+TGG | - | chr1_1:5871020-5871039 | None:intergenic | 35.0% | |
| AATGTAGGTGCACATACAAT+TGG | + | chr1_1:5871212-5871231 | Msa0003350:intron | 35.0% | |
| TTTCTAGATTCGAATCTGGT+TGG | - | chr1_1:5871292-5871311 | None:intergenic | 35.0% | |
| ! | TGACAACATTATTTCTCCCT+TGG | + | chr1_1:5871358-5871377 | Msa0003350:CDS | 35.0% |
| ! | ATTATTTCTCCCTTGGACTT+TGG | + | chr1_1:5871365-5871384 | Msa0003350:CDS | 35.0% |
| AAACTCTTACTTACGGGAAA+AGG | + | chr1_1:5871419-5871438 | Msa0003350:CDS | 35.0% | |
| CCAAAGTGAAAATCATGGAC+AGG | - | chr1_1:5869864-5869883 | None:intergenic | 40.0% | |
| ! | CCTGTCCATGATTTTCACTT+TGG | + | chr1_1:5869861-5869880 | Msa0003350:five_prime_UTR | 40.0% |
| ! | TCCATGATTTTCACTTTGGC+TGG | + | chr1_1:5869865-5869884 | Msa0003350:five_prime_UTR | 40.0% |
| ! | CCATGATTTTCACTTTGGCT+GGG | + | chr1_1:5869866-5869885 | Msa0003350:five_prime_UTR | 40.0% |
| ! | CATGATTTTCACTTTGGCTG+GGG | + | chr1_1:5869867-5869886 | Msa0003350:five_prime_UTR | 40.0% |
| ! | ACCACTAGAGGAATGTCTTT+TGG | + | chr1_1:5869906-5869925 | Msa0003350:exon | 40.0% |
| TCCAAAAGACATTCCTCTAG+TGG | - | chr1_1:5869910-5869929 | None:intergenic | 40.0% | |
| TGACATTGTCATGTCAGTCT+TGG | + | chr1_1:5869971-5869990 | Msa0003350:CDS | 40.0% | |
| ! | CTGCGATGCATCAATTTTGT+TGG | + | chr1_1:5870470-5870489 | Msa0003350:CDS | 40.0% |
| ! | CCTCGAACGGAATTTTTGTT+AGG | - | chr1_1:5870534-5870553 | None:intergenic | 40.0% |
| CCTAACAAAAATTCCGTTCG+AGG | + | chr1_1:5870531-5870550 | Msa0003350:CDS | 40.0% | |
| TTTGAGTCTCTCCTTCCTAA+TGG | - | chr1_1:5870957-5870976 | None:intergenic | 40.0% | |
| ! | ACTCAAAAACAGCTAGCCTA+AGG | + | chr1_1:5870970-5870989 | Msa0003350:CDS | 40.0% |
| ! | CTCAAAAACAGCTAGCCTAA+GGG | + | chr1_1:5870971-5870990 | Msa0003350:CDS | 40.0% |
| ! | TCAAAAACAGCTAGCCTAAG+GGG | + | chr1_1:5870972-5870991 | Msa0003350:CDS | 40.0% |
| ! | TCAATAGTTGCATTTGGTGG+GGG | - | chr1_1:5871014-5871033 | None:intergenic | 40.0% |
| CCTTCAATAGTTGCATTTGG+TGG | - | chr1_1:5871017-5871036 | None:intergenic | 40.0% | |
| CCACCAAATGCAACTATTGA+AGG | + | chr1_1:5871014-5871033 | Msa0003350:CDS | 40.0% | |
| CAACAAGGTCTACTTCATCA+AGG | - | chr1_1:5871067-5871086 | None:intergenic | 40.0% | |
| ! | AGAGCGTCACTTCATAATGT+AGG | + | chr1_1:5871197-5871216 | Msa0003350:intron | 40.0% |
| !! | CTGGTTGGTTGTTTCCATTT+TGG | - | chr1_1:5871277-5871296 | None:intergenic | 40.0% |
| AAATCAATGTGCCCAAGATC+AGG | + | chr1_1:5871332-5871351 | Msa0003350:CDS | 40.0% | |
| TGTTAAAGAGACTCGTGACT+TGG | + | chr1_1:5871478-5871497 | Msa0003350:CDS | 40.0% | |
| TGCCTTGTCTATGATCAAGT+TGG | + | chr1_1:5871544-5871563 | Msa0003350:CDS | 40.0% | |
| GCCTTGTCTATGATCAAGTT+GGG | + | chr1_1:5871545-5871564 | Msa0003350:CDS | 40.0% | |
| ! | CCTTGTCTATGATCAAGTTG+GGG | + | chr1_1:5871546-5871565 | Msa0003350:CDS | 40.0% |
| CCAAAGTGAAAATCATGGAC+AGG | - | chr1_1:5869864-5869883 | None:intergenic | 40.0% | |
| ! | CCTGTCCATGATTTTCACTT+TGG | + | chr1_1:5869861-5869880 | Msa0003350:five_prime_UTR | 40.0% |
| ! | TCCATGATTTTCACTTTGGC+TGG | + | chr1_1:5869865-5869884 | Msa0003350:five_prime_UTR | 40.0% |
| ! | CCATGATTTTCACTTTGGCT+GGG | + | chr1_1:5869866-5869885 | Msa0003350:five_prime_UTR | 40.0% |
| ! | CATGATTTTCACTTTGGCTG+GGG | + | chr1_1:5869867-5869886 | Msa0003350:five_prime_UTR | 40.0% |
| ! | ACCACTAGAGGAATGTCTTT+TGG | + | chr1_1:5869906-5869925 | Msa0003350:exon | 40.0% |
| TCCAAAAGACATTCCTCTAG+TGG | - | chr1_1:5869910-5869929 | None:intergenic | 40.0% | |
| TGACATTGTCATGTCAGTCT+TGG | + | chr1_1:5869971-5869990 | Msa0003350:CDS | 40.0% | |
| ! | CTGCGATGCATCAATTTTGT+TGG | + | chr1_1:5870470-5870489 | Msa0003350:CDS | 40.0% |
| ! | CCTCGAACGGAATTTTTGTT+AGG | - | chr1_1:5870534-5870553 | None:intergenic | 40.0% |
| CCTAACAAAAATTCCGTTCG+AGG | + | chr1_1:5870531-5870550 | Msa0003350:CDS | 40.0% | |
| TTTGAGTCTCTCCTTCCTAA+TGG | - | chr1_1:5870957-5870976 | None:intergenic | 40.0% | |
| ! | ACTCAAAAACAGCTAGCCTA+AGG | + | chr1_1:5870970-5870989 | Msa0003350:CDS | 40.0% |
| ! | CTCAAAAACAGCTAGCCTAA+GGG | + | chr1_1:5870971-5870990 | Msa0003350:CDS | 40.0% |
| ! | TCAAAAACAGCTAGCCTAAG+GGG | + | chr1_1:5870972-5870991 | Msa0003350:CDS | 40.0% |
| ! | TCAATAGTTGCATTTGGTGG+GGG | - | chr1_1:5871014-5871033 | None:intergenic | 40.0% |
| CCTTCAATAGTTGCATTTGG+TGG | - | chr1_1:5871017-5871036 | None:intergenic | 40.0% | |
| CCACCAAATGCAACTATTGA+AGG | + | chr1_1:5871014-5871033 | Msa0003350:CDS | 40.0% | |
| CAACAAGGTCTACTTCATCA+AGG | - | chr1_1:5871067-5871086 | None:intergenic | 40.0% | |
| ! | AGAGCGTCACTTCATAATGT+AGG | + | chr1_1:5871197-5871216 | Msa0003350:intron | 40.0% |
| !! | CTGGTTGGTTGTTTCCATTT+TGG | - | chr1_1:5871277-5871296 | None:intergenic | 40.0% |
| AAATCAATGTGCCCAAGATC+AGG | + | chr1_1:5871332-5871351 | Msa0003350:CDS | 40.0% | |
| TGTTAAAGAGACTCGTGACT+TGG | + | chr1_1:5871478-5871497 | Msa0003350:CDS | 40.0% | |
| TGCCTTGTCTATGATCAAGT+TGG | + | chr1_1:5871544-5871563 | Msa0003350:CDS | 40.0% | |
| GCCTTGTCTATGATCAAGTT+GGG | + | chr1_1:5871545-5871564 | Msa0003350:CDS | 40.0% | |
| ! | CCTTGTCTATGATCAAGTTG+GGG | + | chr1_1:5871546-5871565 | Msa0003350:CDS | 40.0% |
| ATCATGGACAGGATGAGCAT+GGG | - | chr1_1:5869853-5869872 | None:intergenic | 45.0% | |
| AATCATGGACAGGATGAGCA+TGG | - | chr1_1:5869854-5869873 | None:intergenic | 45.0% | |
| CCCAGCCAAAGTGAAAATCA+TGG | - | chr1_1:5869869-5869888 | None:intergenic | 45.0% | |
| TGTCATGTCAGTCTTGGAGA+AGG | + | chr1_1:5869977-5869996 | Msa0003350:CDS | 45.0% | |
| AGGTCTGAGTCGTGACATAA+AGG | + | chr1_1:5870107-5870126 | Msa0003350:intron | 45.0% | |
| ATATTGTTGCCCTTGCTGCT+AGG | + | chr1_1:5870622-5870641 | Msa0003350:CDS | 45.0% | |
| TATTGTTGCCCTTGCTGCTA+GGG | + | chr1_1:5870623-5870642 | Msa0003350:CDS | 45.0% | |
| TTTGACAGTTCCACCTGAGA+GGG | - | chr1_1:5871090-5871109 | None:intergenic | 45.0% | |
| ATTTGACAGTTCCACCTGAG+AGG | - | chr1_1:5871091-5871110 | None:intergenic | 45.0% | |
| AGGTGCACATACAATTGGTG+TGG | + | chr1_1:5871217-5871236 | Msa0003350:intron | 45.0% | |
| TGTTGTCACCACCTGATCTT+GGG | - | chr1_1:5871346-5871365 | None:intergenic | 45.0% | |
| ATGTTGTCACCACCTGATCT+TGG | - | chr1_1:5871347-5871366 | None:intergenic | 45.0% | |
| ! | TCAGATGAAGTGCTTCTCAC+AGG | + | chr1_1:5871452-5871471 | Msa0003350:CDS | 45.0% |
| ! | CAGATGAAGTGCTTCTCACA+GGG | + | chr1_1:5871453-5871472 | Msa0003350:CDS | 45.0% |
| CCCCAACTTGATCATAGACA+AGG | - | chr1_1:5871549-5871568 | None:intergenic | 45.0% | |
| TAAAACCAGTGAGAGGACGA+AGG | - | chr1_1:5871574-5871593 | None:intergenic | 45.0% | |
| !!! | CGTCCTCTCACTGGTTTTAA+TGG | + | chr1_1:5871575-5871594 | Msa0003350:CDS | 45.0% |
| TCGCCATTAAAACCAGTGAG+AGG | - | chr1_1:5871581-5871600 | None:intergenic | 45.0% | |
| ATCATGGACAGGATGAGCAT+GGG | - | chr1_1:5869853-5869872 | None:intergenic | 45.0% | |
| AATCATGGACAGGATGAGCA+TGG | - | chr1_1:5869854-5869873 | None:intergenic | 45.0% | |
| CCCAGCCAAAGTGAAAATCA+TGG | - | chr1_1:5869869-5869888 | None:intergenic | 45.0% | |
| TGTCATGTCAGTCTTGGAGA+AGG | + | chr1_1:5869977-5869996 | Msa0003350:CDS | 45.0% | |
| AGGTCTGAGTCGTGACATAA+AGG | + | chr1_1:5870107-5870126 | Msa0003350:intron | 45.0% | |
| ATATTGTTGCCCTTGCTGCT+AGG | + | chr1_1:5870622-5870641 | Msa0003350:CDS | 45.0% | |
| TATTGTTGCCCTTGCTGCTA+GGG | + | chr1_1:5870623-5870642 | Msa0003350:CDS | 45.0% | |
| TTTGACAGTTCCACCTGAGA+GGG | - | chr1_1:5871090-5871109 | None:intergenic | 45.0% | |
| ATTTGACAGTTCCACCTGAG+AGG | - | chr1_1:5871091-5871110 | None:intergenic | 45.0% | |
| AGGTGCACATACAATTGGTG+TGG | + | chr1_1:5871217-5871236 | Msa0003350:intron | 45.0% | |
| TGTTGTCACCACCTGATCTT+GGG | - | chr1_1:5871346-5871365 | None:intergenic | 45.0% | |
| ATGTTGTCACCACCTGATCT+TGG | - | chr1_1:5871347-5871366 | None:intergenic | 45.0% | |
| ! | TCAGATGAAGTGCTTCTCAC+AGG | + | chr1_1:5871452-5871471 | Msa0003350:CDS | 45.0% |
| ! | CAGATGAAGTGCTTCTCACA+GGG | + | chr1_1:5871453-5871472 | Msa0003350:CDS | 45.0% |
| CCCCAACTTGATCATAGACA+AGG | - | chr1_1:5871549-5871568 | None:intergenic | 45.0% | |
| TAAAACCAGTGAGAGGACGA+AGG | - | chr1_1:5871574-5871593 | None:intergenic | 45.0% | |
| !!! | CGTCCTCTCACTGGTTTTAA+TGG | + | chr1_1:5871575-5871594 | Msa0003350:CDS | 45.0% |
| TCGCCATTAAAACCAGTGAG+AGG | - | chr1_1:5871581-5871600 | None:intergenic | 45.0% | |
| ! | GATTTTCACTTTGGCTGGGG+TGG | + | chr1_1:5869870-5869889 | Msa0003350:five_prime_UTR | 50.0% |
| ! | CATCATGGTGGAACCACTAG+AGG | + | chr1_1:5869894-5869913 | Msa0003350:five_prime_UTR | 50.0% |
| CTTGGAGAAGGCCATTGCTA+AGG | + | chr1_1:5869989-5870008 | Msa0003350:CDS | 50.0% | |
| TCTGCACATGAGACTGTACG+AGG | - | chr1_1:5870603-5870622 | None:intergenic | 50.0% | |
| ATTGTTGCCCTTGCTGCTAG+GGG | + | chr1_1:5870624-5870643 | Msa0003350:CDS | 50.0% | |
| AACAGAGTGGAGGACCTAAC+TGG | + | chr1_1:5870925-5870944 | Msa0003350:intron | 50.0% | |
| ACAGAGTGGAGGACCTAACT+GGG | + | chr1_1:5870926-5870945 | Msa0003350:intron | 50.0% | |
| CCTAATGGTAGCTCCCAGTT+AGG | - | chr1_1:5870942-5870961 | None:intergenic | 50.0% | |
| CCTAACTGGGAGCTACCATT+AGG | + | chr1_1:5870939-5870958 | Msa0003350:CDS | 50.0% | |
| ACTGGGAGCTACCATTAGGA+AGG | + | chr1_1:5870943-5870962 | Msa0003350:CDS | 50.0% | |
| TCAATGTGCCCAAGATCAGG+TGG | + | chr1_1:5871335-5871354 | Msa0003350:CDS | 50.0% | |
| CTTGGGGAACCAAAGTCCAA+GGG | - | chr1_1:5871377-5871396 | None:intergenic | 50.0% | |
| TCTTGGGGAACCAAAGTCCA+AGG | - | chr1_1:5871378-5871397 | None:intergenic | 50.0% | |
| ! | GATTTTCACTTTGGCTGGGG+TGG | + | chr1_1:5869870-5869889 | Msa0003350:five_prime_UTR | 50.0% |
| ! | CATCATGGTGGAACCACTAG+AGG | + | chr1_1:5869894-5869913 | Msa0003350:five_prime_UTR | 50.0% |
| CTTGGAGAAGGCCATTGCTA+AGG | + | chr1_1:5869989-5870008 | Msa0003350:CDS | 50.0% | |
| TCTGCACATGAGACTGTACG+AGG | - | chr1_1:5870603-5870622 | None:intergenic | 50.0% | |
| ATTGTTGCCCTTGCTGCTAG+GGG | + | chr1_1:5870624-5870643 | Msa0003350:CDS | 50.0% | |
| AACAGAGTGGAGGACCTAAC+TGG | + | chr1_1:5870925-5870944 | Msa0003350:intron | 50.0% | |
| ACAGAGTGGAGGACCTAACT+GGG | + | chr1_1:5870926-5870945 | Msa0003350:intron | 50.0% | |
| CCTAATGGTAGCTCCCAGTT+AGG | - | chr1_1:5870942-5870961 | None:intergenic | 50.0% | |
| CCTAACTGGGAGCTACCATT+AGG | + | chr1_1:5870939-5870958 | Msa0003350:CDS | 50.0% | |
| ACTGGGAGCTACCATTAGGA+AGG | + | chr1_1:5870943-5870962 | Msa0003350:CDS | 50.0% | |
| TCAATGTGCCCAAGATCAGG+TGG | + | chr1_1:5871335-5871354 | Msa0003350:CDS | 50.0% | |
| CTTGGGGAACCAAAGTCCAA+GGG | - | chr1_1:5871377-5871396 | None:intergenic | 50.0% | |
| TCTTGGGGAACCAAAGTCCA+AGG | - | chr1_1:5871378-5871397 | None:intergenic | 50.0% | |
| TTTGGCTGGGGTGGTCATCA+TGG | + | chr1_1:5869879-5869898 | Msa0003350:five_prime_UTR | 55.0% | |
| TTACCTGCACGAAGCAGTCG+TGG | - | chr1_1:5870052-5870071 | None:intergenic | 55.0% | |
| AGTGGATCCCCTAGCAGCAA+GGG | - | chr1_1:5870634-5870653 | None:intergenic | 55.0% | |
| GTAGACCTTGTTGCCCTCTC+AGG | + | chr1_1:5871074-5871093 | Msa0003350:CDS | 55.0% | |
| TTCCACCTGAGAGGGCAACA+AGG | - | chr1_1:5871082-5871101 | None:intergenic | 55.0% | |
| TTTGGCTGGGGTGGTCATCA+TGG | + | chr1_1:5869879-5869898 | Msa0003350:five_prime_UTR | 55.0% | |
| TTACCTGCACGAAGCAGTCG+TGG | - | chr1_1:5870052-5870071 | None:intergenic | 55.0% | |
| AGTGGATCCCCTAGCAGCAA+GGG | - | chr1_1:5870634-5870653 | None:intergenic | 55.0% | |
| GTAGACCTTGTTGCCCTCTC+AGG | + | chr1_1:5871074-5871093 | Msa0003350:CDS | 55.0% | |
| TTCCACCTGAGAGGGCAACA+AGG | - | chr1_1:5871082-5871101 | None:intergenic | 55.0% | |
| CTTCCACGACTGCTTCGTGC+AGG | + | chr1_1:5870046-5870065 | Msa0003350:CDS | 60.0% | |
| CAGTGGATCCCCTAGCAGCA+AGG | - | chr1_1:5870635-5870654 | None:intergenic | 60.0% | |
| GACCTTGTTGCCCTCTCAGG+TGG | + | chr1_1:5871077-5871096 | Msa0003350:intron | 60.0% | |
| GGGAACCTTCGTCCTCTCAC+TGG | + | chr1_1:5871566-5871585 | Msa0003350:CDS | 60.0% | |
| CTTCCACGACTGCTTCGTGC+AGG | + | chr1_1:5870046-5870065 | Msa0003350:CDS | 60.0% | |
| CAGTGGATCCCCTAGCAGCA+AGG | - | chr1_1:5870635-5870654 | None:intergenic | 60.0% | |
| GACCTTGTTGCCCTCTCAGG+TGG | + | chr1_1:5871077-5871096 | Msa0003350:intron | 60.0% | |
| GGGAACCTTCGTCCTCTCAC+TGG | + | chr1_1:5871566-5871585 | Msa0003350:CDS | 60.0% | |
| GGCTGGGGTGGTCATCATGG+TGG | + | chr1_1:5869882-5869901 | Msa0003350:five_prime_UTR | 65.0% | |
| GGCTGGGGTGGTCATCATGG+TGG | + | chr1_1:5869882-5869901 | Msa0003350:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 5869829 | 5871628 | 5869829 | ID=Msa0003350;Name=Msa0003350 |
| chr1_1 | mRNA | 5869829 | 5871628 | 5869829 | ID=Msa0003350-mRNA-1;Parent=Msa0003350;Name=Msa0003350-mRNA-1;_AED=0.19;_eAED=0.20;_QI=89|0|0|1|1|1|4|0|306 |
| chr1_1 | exon | 5869829 | 5870067 | 5869829 | ID=Msa0003350-mRNA-1:exon:1821;Parent=Msa0003350-mRNA-1 |
| chr1_1 | exon | 5870468 | 5870659 | 5870468 | ID=Msa0003350-mRNA-1:exon:1822;Parent=Msa0003350-mRNA-1 |
| chr1_1 | exon | 5870930 | 5871095 | 5870930 | ID=Msa0003350-mRNA-1:exon:1823;Parent=Msa0003350-mRNA-1 |
| chr1_1 | exon | 5871219 | 5871628 | 5871219 | ID=Msa0003350-mRNA-1:exon:1824;Parent=Msa0003350-mRNA-1 |
| chr1_1 | five_prime_UTR | 5869829 | 5869917 | 5869829 | ID=Msa0003350-mRNA-1:five_prime_utr;Parent=Msa0003350-mRNA-1 |
| chr1_1 | CDS | 5869918 | 5870067 | 5869918 | ID=Msa0003350-mRNA-1:cds;Parent=Msa0003350-mRNA-1 |
| chr1_1 | CDS | 5870468 | 5870659 | 5870468 | ID=Msa0003350-mRNA-1:cds;Parent=Msa0003350-mRNA-1 |
| chr1_1 | CDS | 5870930 | 5871095 | 5870930 | ID=Msa0003350-mRNA-1:cds;Parent=Msa0003350-mRNA-1 |
| chr1_1 | CDS | 5871219 | 5871628 | 5871219 | ID=Msa0003350-mRNA-1:cds;Parent=Msa0003350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
