AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0873940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0873940 MtrunA17_Chr6g0454761 95.397 478 21 1 7 484 469 945 0.0 912
Msa0873940 MtrunA17_Chr6g0454761 79.912 453 84 2 35 484 9 457 0.0 742
Msa0873940 MtrunA17_Chr6g0455341 58.225 462 178 8 33 484 7 463 0.0 531
Msa0873940 MtrunA17_Chr6g0455361 58.351 461 178 8 32 484 6 460 0.0 524
Msa0873940 MtrunA17_Chr6g0455351 51.293 464 174 9 32 484 6 428 5.25e-153 442
Msa0873940 MtrunA17_Chr7g0219331 46.269 469 233 10 28 483 91 553 1.45e-143 422
Msa0873940 MtrunA17_Chr7g0219301 45.633 458 232 9 35 480 5 457 2.80e-136 414
Msa0873940 MtrunA17_Chr7g0219301 45.525 257 132 5 231 483 631 883 6.89e-62 216
Msa0873940 MtrunA17_Chr7g0219301 45.361 97 52 1 51 147 533 628 3.98e-22 100
Msa0873940 MtrunA17_Chr7g0219291 43.913 460 244 8 35 481 357 815 9.31e-117 362
Msa0873940 MtrunA17_Chr7g0219291 37.676 284 163 7 196 468 35 315 2.50e-49 181
Msa0873940 MtrunA17_Chr7g0219241 41.845 466 250 9 35 481 10 473 3.90e-115 347
Msa0873940 MtrunA17_Chr6g0454741 90.341 176 17 0 101 276 20 195 1.54e-112 332
Msa0873940 MtrunA17_Chr6g0454741 70.149 67 14 2 393 459 177 237 5.44e-22 94.7
Msa0873940 MtrunA17_Chr7g0219181 40.213 470 255 11 35 481 9 475 1.58e-109 333
Msa0873940 MtrunA17_Chr7g0219121 39.706 476 262 10 30 481 3 477 1.91e-109 333
Msa0873940 MtrunA17_Chr2g0323511 33.121 471 286 7 37 484 21 485 1.81e-78 253
Msa0873940 MtrunA17_Chr7g0219101 33.689 469 242 9 35 481 9 430 1.96e-77 248
Msa0873940 MtrunA17_Chr2g0323471 33.110 447 273 8 51 481 41 477 3.54e-70 231
Msa0873940 MtrunA17_Chr8g0339641 34.056 461 272 11 50 484 21 475 1.35e-67 224
Msa0873940 MtrunA17_Chr3g0087901 32.096 458 283 10 48 484 17 467 1.39e-66 221
Msa0873940 MtrunA17_Chr2g0323501 31.788 453 273 12 56 484 38 478 3.57e-65 218
Msa0873940 MtrunA17_Chr2g0323481 32.500 440 260 12 68 484 39 464 2.56e-64 215
Msa0873940 MtrunA17_Chr2g0323421 31.161 491 291 14 21 484 42 512 5.05e-64 216
Msa0873940 MtrunA17_Chr3g0124341 31.601 481 289 14 30 482 5 473 1.67e-61 208
Msa0873940 MtrunA17_Chr7g0219211 39.194 273 155 5 35 297 10 281 1.29e-57 194
Msa0873940 MtrunA17_Chr7g0219351 42.986 221 115 5 101 313 14 231 1.04e-54 182
Msa0873940 MtrunA17_Chr3g0083761 31.237 477 280 15 36 484 8 464 4.82e-53 186
Msa0873940 MtrunA17_Chr7g0219881 31.303 476 266 15 36 477 8 456 5.14e-51 180
Msa0873940 MtrunA17_Chr7g0219191 45.685 197 103 3 45 237 9 205 3.24e-48 166
Msa0873940 MtrunA17_Chr7g0219341 49.007 151 75 2 334 483 3 152 2.68e-45 155
Msa0873940 MtrunA17_Chr7g0219251 46.988 166 85 2 35 197 8 173 1.79e-42 149
Msa0873940 MtrunA17_Chr7g0219221 42.675 157 89 1 326 481 2 158 5.08e-38 136
Msa0873940 MtrunA17_Chr7g0219311 47.518 141 71 3 328 466 8 147 4.25e-35 128
Msa0873940 MtrunA17_Chr7g0219201 39.062 192 112 3 295 481 11 202 1.71e-34 128
Msa0873940 MtrunA17_Chr3g0092011 30.714 280 172 8 33 299 2 272 4.32e-32 124
Msa0873940 MtrunA17_Chr2g0323441 40.854 164 86 5 44 197 13 175 1.17e-24 100
Msa0873940 MtrunA17_Chr8g0374641 25.121 414 248 17 89 474 56 435 6.51e-20 92.0
Msa0873940 MtrunA17_Chr4g0053111 26.367 311 200 11 169 474 152 438 8.78e-20 91.7
Msa0873940 MtrunA17_Chr8g0359251 27.523 327 184 13 169 484 147 431 3.86e-19 89.7
Msa0873940 MtrunA17_Chr4g0053091 25.566 442 254 14 60 474 32 425 7.41e-19 89.0
Msa0873940 MtrunA17_Chr3g0132001 26.032 315 203 10 169 478 144 433 2.26e-18 87.4
Msa0873940 MtrunA17_Chr2g0334001 21.319 455 315 14 36 477 5 429 3.10e-18 87.0
Msa0873940 MtrunA17_Chr4g0053081 23.165 436 251 15 79 474 45 436 2.05e-17 84.3
Msa0873940 MtrunA17_Chr7g0224131 25.935 401 246 15 52 433 21 389 2.21e-17 84.3
Msa0873940 MtrunA17_Chr3g0092001 33.913 115 73 2 370 484 9 120 3.22e-17 77.8
Msa0873940 MtrunA17_Chr3g0087221 27.586 406 244 20 67 449 36 414 3.34e-17 84.0
Msa0873940 MtrunA17_Chr4g0072041 22.517 453 300 13 60 481 28 460 4.62e-17 83.6
Msa0873940 MtrunA17_Chr7g0253541 21.503 479 318 17 36 482 6 458 4.92e-17 83.6
Msa0873940 MtrunA17_Chr4g0010361 23.951 405 259 15 89 471 52 429 2.77e-16 80.9
Msa0873940 MtrunA17_Chr4g0010381 26.415 318 197 14 169 474 138 430 5.66e-16 80.1
Msa0873940 MtrunA17_Chr5g0436621 22.748 444 274 15 81 473 50 475 3.00e-15 78.2
Msa0873940 MtrunA17_Chr2g0311401 21.136 317 217 8 172 477 5 299 5.83e-15 75.5
Msa0873940 MtrunA17_Chr7g0252731 27.206 272 146 9 172 434 151 379 1.23e-14 75.9
Msa0873940 MtrunA17_Chr3g0134071 24.286 420 251 15 84 473 62 444 7.06e-14 73.9
Msa0873940 MtrunA17_Chr8g0376901 22.517 453 289 15 41 473 10 420 1.12e-13 72.8
Msa0873940 MtrunA17_Chr2g0323491 45.714 70 38 0 415 484 11 80 2.17e-13 65.5
Msa0873940 MtrunA17_Chr5g0408911 25.059 427 265 19 49 457 35 424 2.53e-13 72.0
Msa0873940 MtrunA17_Chr4g0054081 21.967 478 329 16 26 481 1 456 4.11e-13 71.2
Msa0873940 MtrunA17_Chr3g0113181 25.182 413 263 20 87 470 61 456 2.05e-12 69.3
Msa0873940 MtrunA17_Chr3g0134091 24.460 417 271 18 71 470 47 436 3.94e-12 68.2
Msa0873940 MtrunA17_Chr7g0253531 22.870 446 285 18 73 484 40 460 1.65e-11 66.2
Msa0873940 MtrunA17_Chr2g0323451 38.462 78 42 1 305 376 1 78 2.71e-11 59.7
Msa0873940 MtrunA17_Chr7g0252771 25.243 206 140 6 277 477 55 251 6.90e-11 62.8
Msa0873940 MtrunA17_Chr2g0278481 24.034 466 273 22 42 475 25 441 6.93e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0873940 AT5G39090.1 36.842 456 249 10 43 482 16 448 2.11e-95 296
Msa0873940 AT5G39050.1 38.641 471 257 13 33 482 9 468 1.58e-94 294
Msa0873940 AT3G29635.1 37.923 443 250 10 52 482 26 455 4.63e-94 293
Msa0873940 AT5G39080.1 33.619 467 281 12 30 477 1 457 4.12e-89 280
Msa0873940 AT3G29670.1 36.322 435 263 7 53 483 27 451 1.34e-88 278
Msa0873940 AT3G29680.1 36.281 441 269 7 46 482 16 448 6.41e-88 276
Msa0873940 AT5G61160.1 34.498 458 274 12 35 479 4 448 1.50e-85 270
Msa0873940 AT3G29590.1 34.934 458 265 12 38 482 12 449 2.95e-82 262
Msa0873940 AT1G03940.1 31.328 482 278 15 32 482 6 465 1.05e-60 206
Msa0873940 AT1G03495.1 31.138 334 200 11 44 360 19 339 8.20e-35 133
Msa0873940 AT3G29690.1 37.423 163 92 3 322 483 27 180 1.12e-27 109
Msa0873940 AT3G29720.1 34.211 190 104 7 129 311 26 201 1.31e-20 90.9
Msa0873940 AT5G57840.1 22.747 466 310 16 35 481 4 438 3.70e-19 90.1
Msa0873940 AT2G19070.1 22.863 468 315 18 37 481 7 451 2.82e-18 87.4
Msa0873940 AT2G39980.1 24.186 430 270 20 82 470 52 466 3.98e-16 81.3
Msa0873940 AT5G07850.1 25.178 421 270 16 71 473 49 442 7.26e-16 80.1
Msa0873940 AT5G41040.2 24.214 318 208 11 170 479 148 440 1.97e-14 75.9
Msa0873940 AT5G41040.1 24.214 318 208 11 170 479 164 456 2.39e-14 75.5
Msa0873940 AT3G48720.1 21.681 452 298 15 42 477 17 428 3.02e-14 75.1
Msa0873940 AT5G38130.1 25.163 306 194 10 169 466 165 443 1.05e-12 70.5
Msa0873940 AT3G50270.1 28.834 163 108 5 277 433 237 397 3.37e-11 65.9

Find 94 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATTAATGCAAATTATTT+TGG 0.083055 6_1:+9574432 Msa0873940:CDS
CCAAAATAATTTGCATTAAT+TGG 0.091109 6_1:-9574432 None:intergenic
AAAGCTAACTTGTTGGATTT+TGG 0.134347 6_1:-9574372 None:intergenic
CACAAAGATTTGAACATAAA+AGG 0.188006 6_1:-9573822 None:intergenic
TCAAAAGGGTGGTTGAATTT+TGG 0.191612 6_1:+9574132 Msa0873940:CDS
GAAGTAACATCAACTTTCTT+AGG 0.241380 6_1:-9574696 None:intergenic
ATTTGATTCAGCTACAATTA+AGG 0.243376 6_1:-9573788 None:intergenic
GGAAACAATTAATACAATAA+AGG 0.263896 6_1:+9574188 Msa0873940:CDS
CCCTATGGGGTCTCTTATAA+TGG 0.278793 6_1:-9574094 None:intergenic
ATCTTGAGGTAAGGACAAAA+AGG 0.294994 6_1:-9574049 None:intergenic
TTTGATTCAGCTACAATTAA+GGG 0.310052 6_1:-9573787 None:intergenic
TGTTGTGTCAAAATTAGTTT+TGG 0.315208 6_1:+9574461 Msa0873940:CDS
AGTTACTTGTGCTTATTTGT+TGG 0.323900 6_1:+9574326 Msa0873940:CDS
TGTTGAAGGGTTTGGAGAAT+TGG 0.328116 6_1:+9574571 Msa0873940:CDS
TCAAGGGAGTGTTTGAGATT+TGG 0.333149 6_1:-9573667 None:intergenic
CACTTTCTTTGACACACTTT+GGG 0.343151 6_1:+9573564 Msa0873940:CDS
TAATCGAAGCTTGAAGGTTT+GGG 0.348105 6_1:+9574167 Msa0873940:CDS
ATGTTGAAGGGTTTGGAAAA+TGG 0.352891 6_1:+9574546 Msa0873940:CDS
ATAATCGAAGCTTGAAGGTT+TGG 0.353389 6_1:+9574166 Msa0873940:CDS
AAGTGATATGTTGAAGGGTT+TGG 0.377675 6_1:+9574539 Msa0873940:CDS
ACACACCATGCAGCTGTTGA+TGG 0.380958 6_1:+9573961 Msa0873940:CDS
CTAGGGACATAGTTGATGAT+AGG 0.385902 6_1:-9573754 None:intergenic
GTGTTTGAGATTTGGAAGAA+TGG 0.387150 6_1:-9573659 None:intergenic
GGCTTTGAACAAACAACAAA+TGG 0.391256 6_1:+9574788 Msa0873940:CDS
TGTGGATTGTAGGCCACGTT+TGG 0.395299 6_1:+9574404 Msa0873940:CDS
ATAAATCTCATTTATCCCTA+TGG 0.399315 6_1:-9574109 None:intergenic
CATGTGAAATCTCCAAAGTT+GGG 0.400447 6_1:-9573870 None:intergenic
TCATGTGAAATCTCCAAAGT+TGG 0.401690 6_1:-9573871 None:intergenic
TCACTTTCTTTGACACACTT+TGG 0.401849 6_1:+9573563 Msa0873940:CDS
AACCACTTCCTCCTTCTTGT+TGG 0.407332 6_1:+9573700 Msa0873940:CDS
CAACTTTGTTTATGAAAGCT+TGG 0.412169 6_1:+9573992 Msa0873940:CDS
ACAATACTTGATCCCAACTT+TGG 0.412297 6_1:+9573858 Msa0873940:CDS
TAAATGAGATTTATTCAAAA+GGG 0.420073 6_1:+9574118 Msa0873940:CDS
GTTACTTCTATTGACAAAAC+AGG 0.421948 6_1:+9574711 Msa0873940:CDS
AACAAATAATCGAAGCTTGA+AGG 0.430495 6_1:+9574161 Msa0873940:CDS
GAAACAATTAATACAATAAA+GGG 0.431068 6_1:+9574189 Msa0873940:CDS
AAAGTGAAGGGAAAAGTAGT+TGG 0.438716 6_1:-9573547 None:intergenic
ATAAATGAGATTTATTCAAA+AGG 0.440088 6_1:+9574117 Msa0873940:CDS
AATGATGGTGGAATTGAGAT+TGG 0.442831 6_1:+9574762 Msa0873940:CDS
AAATGGTGTGTTGAAGGGTT+TGG 0.446123 6_1:+9574563 Msa0873940:CDS
TAAATCTCATTTATCCCTAT+GGG 0.448354 6_1:-9574108 None:intergenic
TAGAAGAACAAACGTTCAAC+TGG 0.451960 6_1:-9573598 None:intergenic
AGTGGTTGAGTGTAAGTTCA+AGG 0.453955 6_1:-9573684 None:intergenic
AAGTGAAGGGAAAAGTAGTT+GGG 0.454010 6_1:-9573546 None:intergenic
CCAATACAAAATCCATGGTT+AGG 0.454240 6_1:-9573931 None:intergenic
AAATAATTTGCATTAATTGG+TGG 0.462390 6_1:-9574429 None:intergenic
GGATTTATTAGTGCTCTTGA+AGG 0.463437 6_1:+9574513 Msa0873940:CDS
AACATCAAACCTAGGTGATC+CGG 0.463844 6_1:-9574646 None:intergenic
CTACAATGAGTGAGACAGAT+AGG 0.476438 6_1:+9574610 Msa0873940:CDS
AGGGATAAGTGATATGTTGA+AGG 0.482957 6_1:+9574533 Msa0873940:CDS
TTTGGAAAATGGTGTGTTGA+AGG 0.486429 6_1:+9574557 Msa0873940:CDS
TGAAAGATAGATTCCGACAT+TGG 0.493161 6_1:-9572900 None:intergenic
ATGAGATTTATTCAAAAGGG+TGG 0.512779 6_1:+9574121 Msa0873940:CDS
TGCTTATTTGTTGGCATGTG+CGG 0.516746 6_1:+9574335 Msa0873940:CDS
TGGTGGAATTGAGATTGGTT+TGG 0.524781 6_1:+9574767 Msa0873940:CDS
TGAGATTGTGCCACAAGGGA+GGG 0.530271 6_1:-9573478 None:intergenic
TTGGAAAATGGTGTGTTGAA+GGG 0.530378 6_1:+9574558 Msa0873940:CDS
TAGGGACATAGTTGATGATA+GGG 0.535295 6_1:-9573753 None:intergenic
TCGGAGAATAAGAATAATGA+TGG 0.536773 6_1:+9574747 Msa0873940:CDS
TCAATTTCTTCCCTCCCTTG+TGG 0.543804 6_1:+9573468 Msa0873940:CDS
GAGAATAAGAATAATGATGG+TGG 0.545768 6_1:+9574750 Msa0873940:CDS
GATTTATTAGTGCTCTTGAA+GGG 0.556348 6_1:+9574514 Msa0873940:CDS
TACCAACAAGAAGGAGGAAG+TGG 0.558114 6_1:-9573702 None:intergenic
AGGTGTTAGATCTTGAGGTA+AGG 0.558936 6_1:-9574058 None:intergenic
ATTGATGAGGAAGTGAAGCT+TGG 0.565564 6_1:-9573450 None:intergenic
CCATTATAAGAGACCCCATA+GGG 0.569245 6_1:+9574094 Msa0873940:CDS
TTCTTGTTGGTAACATCACA+TGG 0.577548 6_1:+9573713 Msa0873940:CDS
AAGAACAAACGTTCAACTGG+TGG 0.580223 6_1:-9573595 None:intergenic
GTGAGATTGTGCCACAAGGG+AGG 0.581034 6_1:-9573479 None:intergenic
TTTGAACAAACAACAAATGG+AGG 0.581239 6_1:+9574791 Msa0873940:CDS
GTGGTTGAGTGTAAGTTCAA+GGG 0.582354 6_1:-9573683 None:intergenic
GGGATAAGTGATATGTTGAA+GGG 0.583960 6_1:+9574534 Msa0873940:CDS
AGTGAAGGGAAAAGTAGTTG+GGG 0.590094 6_1:-9573545 None:intergenic
TTATACCAATACAAAATCCA+TGG 0.591024 6_1:-9573936 None:intergenic
GAAGGGAAAAGTAGTTGGGG+GGG 0.598975 6_1:-9573542 None:intergenic
AAGTGTGTCAAAGAAAGTGA+AGG 0.603639 6_1:-9573560 None:intergenic
ATTAAGGGAATAGAATCACT+AGG 0.605868 6_1:-9573772 None:intergenic
AGTGTGTCAAAGAAAGTGAA+GGG 0.609596 6_1:-9573559 None:intergenic
CTTTGTGAGATTGTGCCACA+AGG 0.613232 6_1:-9573483 None:intergenic
AAACTATAAACATCAAACCT+AGG 0.613927 6_1:-9574654 None:intergenic
ATGTGATGTTACCAACAAGA+AGG 0.622511 6_1:-9573711 None:intergenic
ATAAAGGGTGAAGCAATCAA+AGG 0.633498 6_1:+9574204 Msa0873940:CDS
TCCATTATAAGAGACCCCAT+AGG 0.635316 6_1:+9574093 Msa0873940:CDS
TTTGTGAGATTGTGCCACAA+GGG 0.638098 6_1:-9573482 None:intergenic
TTTCTATTGCCGGATCACCT+AGG 0.641674 6_1:+9574637 Msa0873940:CDS
TGATGTTACCAACAAGAAGG+AGG 0.651029 6_1:-9573708 None:intergenic
TTAAGGGAATAGAATCACTA+GGG 0.654848 6_1:-9573771 None:intergenic
TGAAGGGAAAAGTAGTTGGG+GGG 0.663109 6_1:-9573543 None:intergenic
TTAATTGGTGGATCCAAACG+TGG 0.667330 6_1:-9574417 None:intergenic
AGGGAGGGAAGAAATTGATG+AGG 0.667622 6_1:-9573463 None:intergenic
AAATCTCATTTATCCCTATG+GGG 0.669606 6_1:-9574107 None:intergenic
ATAGGGTGTGGTGAATCTTG+TGG 0.670242 6_1:-9573736 None:intergenic
GTGAAGGGAAAAGTAGTTGG+GGG 0.672274 6_1:-9573544 None:intergenic
ACATAGTTGATGATAGGGTG+TGG 0.685311 6_1:-9573748 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAATTTTTTAATATTAA+TGG - chr6_1:9573303-9573322 None:intergenic 0.0%
!!! TTTAAATTTTTTAATATTAA+TGG - chr6_1:9573303-9573322 None:intergenic 0.0%
!! ATAAATGAGATTTATTCAAA+AGG + chr6_1:9574117-9574136 Msa0873940:CDS 15.0%
!! TAAATGAGATTTATTCAAAA+GGG + chr6_1:9574118-9574137 Msa0873940:CDS 15.0%
!! GAAACAATTAATACAATAAA+GGG + chr6_1:9574189-9574208 Msa0873940:CDS 15.0%
!! ATAAATGAGATTTATTCAAA+AGG + chr6_1:9574117-9574136 Msa0873940:CDS 15.0%
!! TAAATGAGATTTATTCAAAA+GGG + chr6_1:9574118-9574137 Msa0873940:CDS 15.0%
!! GAAACAATTAATACAATAAA+GGG + chr6_1:9574189-9574208 Msa0873940:CDS 15.0%
!! AATGGAATCAAAGAAAAAAT+TGG - chr6_1:9573644-9573663 None:intergenic 20.0%
!! GGAAACAATTAATACAATAA+AGG + chr6_1:9574188-9574207 Msa0873940:CDS 20.0%
!!! CTTGTTATTTTTTTCAATCT+TGG - chr6_1:9574283-9574302 None:intergenic 20.0%
!! CAAGATTGAAAAAAATAACA+AGG + chr6_1:9574281-9574300 Msa0873940:CDS 20.0%
!!! AAAAATAAAAGCTAACTTGT+TGG - chr6_1:9574382-9574401 None:intergenic 20.0%
!!! AAATAATTTGCATTAATTGG+TGG - chr6_1:9574432-9574451 None:intergenic 20.0%
!!! CCAAAATAATTTGCATTAAT+TGG - chr6_1:9574435-9574454 None:intergenic 20.0%
!!! CCAATTAATGCAAATTATTT+TGG + chr6_1:9574432-9574451 Msa0873940:CDS 20.0%
!!! ATCTTCTTTTAAAAATTCCT+CGG - chr6_1:9574493-9574512 None:intergenic 20.0%
!!! GATGTTTATAGTTTTGATTT+TGG + chr6_1:9574663-9574682 Msa0873940:CDS 20.0%
!!! TTTATAGTTTTGATTTTGGA+TGG + chr6_1:9574667-9574686 Msa0873940:CDS 20.0%
!!! TTATAGTTTTGATTTTGGAT+GGG + chr6_1:9574668-9574687 Msa0873940:CDS 20.0%
!! AATGGAATCAAAGAAAAAAT+TGG - chr6_1:9573644-9573663 None:intergenic 20.0%
!! GGAAACAATTAATACAATAA+AGG + chr6_1:9574188-9574207 Msa0873940:CDS 20.0%
!!! CTTGTTATTTTTTTCAATCT+TGG - chr6_1:9574283-9574302 None:intergenic 20.0%
!! CAAGATTGAAAAAAATAACA+AGG + chr6_1:9574281-9574300 Msa0873940:CDS 20.0%
!!! AAAAATAAAAGCTAACTTGT+TGG - chr6_1:9574382-9574401 None:intergenic 20.0%
!!! AAATAATTTGCATTAATTGG+TGG - chr6_1:9574432-9574451 None:intergenic 20.0%
!!! CCAAAATAATTTGCATTAAT+TGG - chr6_1:9574435-9574454 None:intergenic 20.0%
!!! CCAATTAATGCAAATTATTT+TGG + chr6_1:9574432-9574451 Msa0873940:CDS 20.0%
!!! ATCTTCTTTTAAAAATTCCT+CGG - chr6_1:9574493-9574512 None:intergenic 20.0%
!!! GATGTTTATAGTTTTGATTT+TGG + chr6_1:9574663-9574682 Msa0873940:CDS 20.0%
!!! TTTATAGTTTTGATTTTGGA+TGG + chr6_1:9574667-9574686 Msa0873940:CDS 20.0%
!!! TTATAGTTTTGATTTTGGAT+GGG + chr6_1:9574668-9574687 Msa0873940:CDS 20.0%
! ACAAAAGTTCTCATTAATGA+AGG + chr6_1:9572986-9573005 Msa0873940:intron 25.0%
! CAAAAGTTCTCATTAATGAA+GGG + chr6_1:9572987-9573006 Msa0873940:intron 25.0%
! GAAAAAATTGGTAGACAAAT+TGG - chr6_1:9573632-9573651 None:intergenic 25.0%
! TTTGATTCAGCTACAATTAA+GGG - chr6_1:9573790-9573809 None:intergenic 25.0%
! ATTTGATTCAGCTACAATTA+AGG - chr6_1:9573791-9573810 None:intergenic 25.0%
! CACAAAGATTTGAACATAAA+AGG - chr6_1:9573825-9573844 None:intergenic 25.0%
! TTATACCAATACAAAATCCA+TGG - chr6_1:9573939-9573958 None:intergenic 25.0%
!!! AAAAGGGTGTATTTTTTTCA+AGG - chr6_1:9574035-9574054 None:intergenic 25.0%
!!! ATCTAACACCTTTTTTTGAT+AGG + chr6_1:9574070-9574089 Msa0873940:CDS 25.0%
!!! ATAATGGACCTATCAAAAAA+AGG - chr6_1:9574081-9574100 None:intergenic 25.0%
! TAAATCTCATTTATCCCTAT+GGG - chr6_1:9574111-9574130 None:intergenic 25.0%
! ATAAATCTCATTTATCCCTA+TGG - chr6_1:9574112-9574131 None:intergenic 25.0%
!!! TATTTTTCAATTGTCACCTT+TGG + chr6_1:9574227-9574246 Msa0873940:CDS 25.0%
!! TTAAGCTTTTGAATATCCAA+AGG - chr6_1:9574246-9574265 None:intergenic 25.0%
!!! GTTAGCTTTTATTTTTAGTG+TGG + chr6_1:9574386-9574405 Msa0873940:CDS 25.0%
!!! TTATTTTTAGTGTGGATTGT+AGG + chr6_1:9574394-9574413 Msa0873940:CDS 25.0%
!!! TGTTGTGTCAAAATTAGTTT+TGG + chr6_1:9574461-9574480 Msa0873940:CDS 25.0%
!!! GTTGTGTCAAAATTAGTTTT+GGG + chr6_1:9574462-9574481 Msa0873940:CDS 25.0%
!!! GAGGAATTTTTAAAAGAAGA+TGG + chr6_1:9574492-9574511 Msa0873940:CDS 25.0%
! AAACTATAAACATCAAACCT+AGG - chr6_1:9574657-9574676 None:intergenic 25.0%
!!! TATAGTTTTGATTTTGGATG+GGG + chr6_1:9574669-9574688 Msa0873940:CDS 25.0%
! ACAAAAGTTCTCATTAATGA+AGG + chr6_1:9572986-9573005 Msa0873940:intron 25.0%
! CAAAAGTTCTCATTAATGAA+GGG + chr6_1:9572987-9573006 Msa0873940:intron 25.0%
! GAAAAAATTGGTAGACAAAT+TGG - chr6_1:9573632-9573651 None:intergenic 25.0%
! TTTGATTCAGCTACAATTAA+GGG - chr6_1:9573790-9573809 None:intergenic 25.0%
! ATTTGATTCAGCTACAATTA+AGG - chr6_1:9573791-9573810 None:intergenic 25.0%
! CACAAAGATTTGAACATAAA+AGG - chr6_1:9573825-9573844 None:intergenic 25.0%
! TTATACCAATACAAAATCCA+TGG - chr6_1:9573939-9573958 None:intergenic 25.0%
!!! AAAAGGGTGTATTTTTTTCA+AGG - chr6_1:9574035-9574054 None:intergenic 25.0%
!!! ATCTAACACCTTTTTTTGAT+AGG + chr6_1:9574070-9574089 Msa0873940:CDS 25.0%
!!! ATAATGGACCTATCAAAAAA+AGG - chr6_1:9574081-9574100 None:intergenic 25.0%
! TAAATCTCATTTATCCCTAT+GGG - chr6_1:9574111-9574130 None:intergenic 25.0%
! ATAAATCTCATTTATCCCTA+TGG - chr6_1:9574112-9574131 None:intergenic 25.0%
!!! TATTTTTCAATTGTCACCTT+TGG + chr6_1:9574227-9574246 Msa0873940:CDS 25.0%
!! TTAAGCTTTTGAATATCCAA+AGG - chr6_1:9574246-9574265 None:intergenic 25.0%
!!! GTTAGCTTTTATTTTTAGTG+TGG + chr6_1:9574386-9574405 Msa0873940:CDS 25.0%
!!! TTATTTTTAGTGTGGATTGT+AGG + chr6_1:9574394-9574413 Msa0873940:CDS 25.0%
!!! TGTTGTGTCAAAATTAGTTT+TGG + chr6_1:9574461-9574480 Msa0873940:CDS 25.0%
!!! GTTGTGTCAAAATTAGTTTT+GGG + chr6_1:9574462-9574481 Msa0873940:CDS 25.0%
!!! GAGGAATTTTTAAAAGAAGA+TGG + chr6_1:9574492-9574511 Msa0873940:CDS 25.0%
! AAACTATAAACATCAAACCT+AGG - chr6_1:9574657-9574676 None:intergenic 25.0%
!!! TATAGTTTTGATTTTGGATG+GGG + chr6_1:9574669-9574688 Msa0873940:CDS 25.0%
!! TTATATGTAGCTTTATCGAG+AGG + chr6_1:9572947-9572966 Msa0873940:intron 30.0%
! GTTGACTTTATAAACACTAG+CGG - chr6_1:9573424-9573443 None:intergenic 30.0%
TTAAGGGAATAGAATCACTA+GGG - chr6_1:9573774-9573793 None:intergenic 30.0%
ATTAAGGGAATAGAATCACT+AGG - chr6_1:9573775-9573794 None:intergenic 30.0%
! CAACTTTGTTTATGAAAGCT+TGG + chr6_1:9573992-9574011 Msa0873940:CDS 30.0%
!! AAAAAAGGTGTTAGATCTTG+AGG - chr6_1:9574066-9574085 None:intergenic 30.0%
AAATCTCATTTATCCCTATG+GGG - chr6_1:9574110-9574129 None:intergenic 30.0%
ATGAGATTTATTCAAAAGGG+TGG + chr6_1:9574121-9574140 Msa0873940:CDS 30.0%
AACAAATAATCGAAGCTTGA+AGG + chr6_1:9574161-9574180 Msa0873940:CDS 30.0%
AGTTACTTGTGCTTATTTGT+TGG + chr6_1:9574326-9574345 Msa0873940:CDS 30.0%
!!! AAAGCTAACTTGTTGGATTT+TGG - chr6_1:9574375-9574394 None:intergenic 30.0%
GATTTATTAGTGCTCTTGAA+GGG + chr6_1:9574514-9574533 Msa0873940:CDS 30.0%
! GATAGGATATTTTCTATTGC+CGG + chr6_1:9574627-9574646 Msa0873940:CDS 30.0%
GAAGTAACATCAACTTTCTT+AGG - chr6_1:9574699-9574718 None:intergenic 30.0%
GTTACTTCTATTGACAAAAC+AGG + chr6_1:9574711-9574730 Msa0873940:CDS 30.0%
TCGGAGAATAAGAATAATGA+TGG + chr6_1:9574747-9574766 Msa0873940:CDS 30.0%
GAGAATAAGAATAATGATGG+TGG + chr6_1:9574750-9574769 Msa0873940:CDS 30.0%
TTTGAACAAACAACAAATGG+AGG + chr6_1:9574791-9574810 Msa0873940:CDS 30.0%
! TTTGCTCAACTTTTTGTTCA+AGG + chr6_1:9574816-9574835 Msa0873940:CDS 30.0%
!! TTATATGTAGCTTTATCGAG+AGG + chr6_1:9572947-9572966 Msa0873940:intron 30.0%
! GTTGACTTTATAAACACTAG+CGG - chr6_1:9573424-9573443 None:intergenic 30.0%
TTAAGGGAATAGAATCACTA+GGG - chr6_1:9573774-9573793 None:intergenic 30.0%
ATTAAGGGAATAGAATCACT+AGG - chr6_1:9573775-9573794 None:intergenic 30.0%
! CAACTTTGTTTATGAAAGCT+TGG + chr6_1:9573992-9574011 Msa0873940:CDS 30.0%
!! AAAAAAGGTGTTAGATCTTG+AGG - chr6_1:9574066-9574085 None:intergenic 30.0%
AAATCTCATTTATCCCTATG+GGG - chr6_1:9574110-9574129 None:intergenic 30.0%
ATGAGATTTATTCAAAAGGG+TGG + chr6_1:9574121-9574140 Msa0873940:CDS 30.0%
AACAAATAATCGAAGCTTGA+AGG + chr6_1:9574161-9574180 Msa0873940:CDS 30.0%
AGTTACTTGTGCTTATTTGT+TGG + chr6_1:9574326-9574345 Msa0873940:CDS 30.0%
!!! AAAGCTAACTTGTTGGATTT+TGG - chr6_1:9574375-9574394 None:intergenic 30.0%
GATTTATTAGTGCTCTTGAA+GGG + chr6_1:9574514-9574533 Msa0873940:CDS 30.0%
! GATAGGATATTTTCTATTGC+CGG + chr6_1:9574627-9574646 Msa0873940:CDS 30.0%
GAAGTAACATCAACTTTCTT+AGG - chr6_1:9574699-9574718 None:intergenic 30.0%
GTTACTTCTATTGACAAAAC+AGG + chr6_1:9574711-9574730 Msa0873940:CDS 30.0%
TCGGAGAATAAGAATAATGA+TGG + chr6_1:9574747-9574766 Msa0873940:CDS 30.0%
GAGAATAAGAATAATGATGG+TGG + chr6_1:9574750-9574769 Msa0873940:CDS 30.0%
TTTGAACAAACAACAAATGG+AGG + chr6_1:9574791-9574810 Msa0873940:CDS 30.0%
! TTTGCTCAACTTTTTGTTCA+AGG + chr6_1:9574816-9574835 Msa0873940:CDS 30.0%
! TCACGACATATTTTCAGTCA+TGG + chr6_1:9572920-9572939 Msa0873940:CDS 35.0%
GGGAAAATAGAAAGAGAAGA+TGG + chr6_1:9573007-9573026 Msa0873940:intron 35.0%
TATAAACACTAGCGGAAAGA+CGG - chr6_1:9573416-9573435 None:intergenic 35.0%
AAGTGAAGGGAAAAGTAGTT+GGG - chr6_1:9573549-9573568 None:intergenic 35.0%
AAAGTGAAGGGAAAAGTAGT+TGG - chr6_1:9573550-9573569 None:intergenic 35.0%
AGTGTGTCAAAGAAAGTGAA+GGG - chr6_1:9573562-9573581 None:intergenic 35.0%
AAGTGTGTCAAAGAAAGTGA+AGG - chr6_1:9573563-9573582 None:intergenic 35.0%
TCACTTTCTTTGACACACTT+TGG + chr6_1:9573563-9573582 Msa0873940:CDS 35.0%
CACTTTCTTTGACACACTTT+GGG + chr6_1:9573564-9573583 Msa0873940:CDS 35.0%
TAGAAGAACAAACGTTCAAC+TGG - chr6_1:9573601-9573620 None:intergenic 35.0%
! GTGTTTGAGATTTGGAAGAA+TGG - chr6_1:9573662-9573681 None:intergenic 35.0%
ATGTGATGTTACCAACAAGA+AGG - chr6_1:9573714-9573733 None:intergenic 35.0%
!! TTCTTGTTGGTAACATCACA+TGG + chr6_1:9573713-9573732 Msa0873940:CDS 35.0%
!! TAGGGACATAGTTGATGATA+GGG - chr6_1:9573756-9573775 None:intergenic 35.0%
ACAATACTTGATCCCAACTT+TGG + chr6_1:9573858-9573877 Msa0873940:CDS 35.0%
CATGTGAAATCTCCAAAGTT+GGG - chr6_1:9573873-9573892 None:intergenic 35.0%
TCATGTGAAATCTCCAAAGT+TGG - chr6_1:9573874-9573893 None:intergenic 35.0%
CCAATACAAAATCCATGGTT+AGG - chr6_1:9573934-9573953 None:intergenic 35.0%
! CCTAACCATGGATTTTGTAT+TGG + chr6_1:9573931-9573950 Msa0873940:CDS 35.0%
!!! GGGTGTATTTTTTTCAAGGT+TGG - chr6_1:9574031-9574050 None:intergenic 35.0%
TCTTGAGGTAAGGACAAAAA+GGG - chr6_1:9574051-9574070 None:intergenic 35.0%
ATCTTGAGGTAAGGACAAAA+AGG - chr6_1:9574052-9574071 None:intergenic 35.0%
! TCAAAAGGGTGGTTGAATTT+TGG + chr6_1:9574132-9574151 Msa0873940:CDS 35.0%
ATAATCGAAGCTTGAAGGTT+TGG + chr6_1:9574166-9574185 Msa0873940:CDS 35.0%
TAATCGAAGCTTGAAGGTTT+GGG + chr6_1:9574167-9574186 Msa0873940:CDS 35.0%
ATAAAGGGTGAAGCAATCAA+AGG + chr6_1:9574204-9574223 Msa0873940:CDS 35.0%
!!! CTAACTTGTTGGATTTTGGT+TGG - chr6_1:9574371-9574390 None:intergenic 35.0%
GGATTTATTAGTGCTCTTGA+AGG + chr6_1:9574513-9574532 Msa0873940:CDS 35.0%
AGGGATAAGTGATATGTTGA+AGG + chr6_1:9574533-9574552 Msa0873940:CDS 35.0%
GGGATAAGTGATATGTTGAA+GGG + chr6_1:9574534-9574553 Msa0873940:CDS 35.0%
AAGTGATATGTTGAAGGGTT+TGG + chr6_1:9574539-9574558 Msa0873940:CDS 35.0%
ATGTTGAAGGGTTTGGAAAA+TGG + chr6_1:9574546-9574565 Msa0873940:CDS 35.0%
TTTGGAAAATGGTGTGTTGA+AGG + chr6_1:9574557-9574576 Msa0873940:CDS 35.0%
TTGGAAAATGGTGTGTTGAA+GGG + chr6_1:9574558-9574577 Msa0873940:CDS 35.0%
!! AACAGGAGCTTTTTCTCTTT+CGG + chr6_1:9574728-9574747 Msa0873940:CDS 35.0%
!! AATGATGGTGGAATTGAGAT+TGG + chr6_1:9574762-9574781 Msa0873940:CDS 35.0%
!! GGCTTTGAACAAACAACAAA+TGG + chr6_1:9574788-9574807 Msa0873940:CDS 35.0%
! TCACGACATATTTTCAGTCA+TGG + chr6_1:9572920-9572939 Msa0873940:CDS 35.0%
GGGAAAATAGAAAGAGAAGA+TGG + chr6_1:9573007-9573026 Msa0873940:intron 35.0%
TATAAACACTAGCGGAAAGA+CGG - chr6_1:9573416-9573435 None:intergenic 35.0%
AAGTGAAGGGAAAAGTAGTT+GGG - chr6_1:9573549-9573568 None:intergenic 35.0%
AAAGTGAAGGGAAAAGTAGT+TGG - chr6_1:9573550-9573569 None:intergenic 35.0%
AGTGTGTCAAAGAAAGTGAA+GGG - chr6_1:9573562-9573581 None:intergenic 35.0%
AAGTGTGTCAAAGAAAGTGA+AGG - chr6_1:9573563-9573582 None:intergenic 35.0%
TCACTTTCTTTGACACACTT+TGG + chr6_1:9573563-9573582 Msa0873940:CDS 35.0%
CACTTTCTTTGACACACTTT+GGG + chr6_1:9573564-9573583 Msa0873940:CDS 35.0%
TAGAAGAACAAACGTTCAAC+TGG - chr6_1:9573601-9573620 None:intergenic 35.0%
! GTGTTTGAGATTTGGAAGAA+TGG - chr6_1:9573662-9573681 None:intergenic 35.0%
ATGTGATGTTACCAACAAGA+AGG - chr6_1:9573714-9573733 None:intergenic 35.0%
!! TTCTTGTTGGTAACATCACA+TGG + chr6_1:9573713-9573732 Msa0873940:CDS 35.0%
!! TAGGGACATAGTTGATGATA+GGG - chr6_1:9573756-9573775 None:intergenic 35.0%
ACAATACTTGATCCCAACTT+TGG + chr6_1:9573858-9573877 Msa0873940:CDS 35.0%
CATGTGAAATCTCCAAAGTT+GGG - chr6_1:9573873-9573892 None:intergenic 35.0%
TCATGTGAAATCTCCAAAGT+TGG - chr6_1:9573874-9573893 None:intergenic 35.0%
CCAATACAAAATCCATGGTT+AGG - chr6_1:9573934-9573953 None:intergenic 35.0%
! CCTAACCATGGATTTTGTAT+TGG + chr6_1:9573931-9573950 Msa0873940:CDS 35.0%
!!! GGGTGTATTTTTTTCAAGGT+TGG - chr6_1:9574031-9574050 None:intergenic 35.0%
TCTTGAGGTAAGGACAAAAA+GGG - chr6_1:9574051-9574070 None:intergenic 35.0%
ATCTTGAGGTAAGGACAAAA+AGG - chr6_1:9574052-9574071 None:intergenic 35.0%
! TCAAAAGGGTGGTTGAATTT+TGG + chr6_1:9574132-9574151 Msa0873940:CDS 35.0%
ATAATCGAAGCTTGAAGGTT+TGG + chr6_1:9574166-9574185 Msa0873940:CDS 35.0%
TAATCGAAGCTTGAAGGTTT+GGG + chr6_1:9574167-9574186 Msa0873940:CDS 35.0%
ATAAAGGGTGAAGCAATCAA+AGG + chr6_1:9574204-9574223 Msa0873940:CDS 35.0%
!!! CTAACTTGTTGGATTTTGGT+TGG - chr6_1:9574371-9574390 None:intergenic 35.0%
GGATTTATTAGTGCTCTTGA+AGG + chr6_1:9574513-9574532 Msa0873940:CDS 35.0%
AGGGATAAGTGATATGTTGA+AGG + chr6_1:9574533-9574552 Msa0873940:CDS 35.0%
GGGATAAGTGATATGTTGAA+GGG + chr6_1:9574534-9574553 Msa0873940:CDS 35.0%
AAGTGATATGTTGAAGGGTT+TGG + chr6_1:9574539-9574558 Msa0873940:CDS 35.0%
ATGTTGAAGGGTTTGGAAAA+TGG + chr6_1:9574546-9574565 Msa0873940:CDS 35.0%
TTTGGAAAATGGTGTGTTGA+AGG + chr6_1:9574557-9574576 Msa0873940:CDS 35.0%
TTGGAAAATGGTGTGTTGAA+GGG + chr6_1:9574558-9574577 Msa0873940:CDS 35.0%
!! AACAGGAGCTTTTTCTCTTT+CGG + chr6_1:9574728-9574747 Msa0873940:CDS 35.0%
!! AATGATGGTGGAATTGAGAT+TGG + chr6_1:9574762-9574781 Msa0873940:CDS 35.0%
!! GGCTTTGAACAAACAACAAA+TGG + chr6_1:9574788-9574807 Msa0873940:CDS 35.0%
ATAAACACTAGCGGAAAGAC+GGG - chr6_1:9573415-9573434 None:intergenic 40.0%
ATTGATGAGGAAGTGAAGCT+TGG - chr6_1:9573453-9573472 None:intergenic 40.0%
TTTGTGAGATTGTGCCACAA+GGG - chr6_1:9573485-9573504 None:intergenic 40.0%
AGTGAAGGGAAAAGTAGTTG+GGG - chr6_1:9573548-9573567 None:intergenic 40.0%
AAGAACAAACGTTCAACTGG+TGG - chr6_1:9573598-9573617 None:intergenic 40.0%
!! TCAAGGGAGTGTTTGAGATT+TGG - chr6_1:9573670-9573689 None:intergenic 40.0%
GTGGTTGAGTGTAAGTTCAA+GGG - chr6_1:9573686-9573705 None:intergenic 40.0%
AGTGGTTGAGTGTAAGTTCA+AGG - chr6_1:9573687-9573706 None:intergenic 40.0%
TGATGTTACCAACAAGAAGG+AGG - chr6_1:9573711-9573730 None:intergenic 40.0%
!! ACATAGTTGATGATAGGGTG+TGG - chr6_1:9573751-9573770 None:intergenic 40.0%
!! CTAGGGACATAGTTGATGAT+AGG - chr6_1:9573757-9573776 None:intergenic 40.0%
! GTCACTCTTTTTCCTAACCA+TGG + chr6_1:9573919-9573938 Msa0873940:CDS 40.0%
! ATTTTCCATCAACAGCTGCA+TGG - chr6_1:9573969-9573988 None:intergenic 40.0%
AGGTGTTAGATCTTGAGGTA+AGG - chr6_1:9574061-9574080 None:intergenic 40.0%
TCCATTATAAGAGACCCCAT+AGG + chr6_1:9574093-9574112 Msa0873940:CDS 40.0%
CCATTATAAGAGACCCCATA+GGG + chr6_1:9574094-9574113 Msa0873940:CDS 40.0%
! AAAGGGTGGTTGAATTTTGG+TGG + chr6_1:9574135-9574154 Msa0873940:CDS 40.0%
! TGCTTATTTGTTGGCATGTG+CGG + chr6_1:9574335-9574354 Msa0873940:CDS 40.0%
! TTAATTGGTGGATCCAAACG+TGG - chr6_1:9574420-9574439 None:intergenic 40.0%
!!! ATTAGTTTTGGGTGAAACCG+AGG + chr6_1:9574473-9574492 Msa0873940:CDS 40.0%
AAATGGTGTGTTGAAGGGTT+TGG + chr6_1:9574563-9574582 Msa0873940:CDS 40.0%
TGTTGAAGGGTTTGGAGAAT+TGG + chr6_1:9574571-9574590 Msa0873940:CDS 40.0%
CTACAATGAGTGAGACAGAT+AGG + chr6_1:9574610-9574629 Msa0873940:CDS 40.0%
AACATCAAACCTAGGTGATC+CGG - chr6_1:9574649-9574668 None:intergenic 40.0%
! TGGTGGAATTGAGATTGGTT+TGG + chr6_1:9574767-9574786 Msa0873940:CDS 40.0%
ATAAACACTAGCGGAAAGAC+GGG - chr6_1:9573415-9573434 None:intergenic 40.0%
ATTGATGAGGAAGTGAAGCT+TGG - chr6_1:9573453-9573472 None:intergenic 40.0%
TTTGTGAGATTGTGCCACAA+GGG - chr6_1:9573485-9573504 None:intergenic 40.0%
AGTGAAGGGAAAAGTAGTTG+GGG - chr6_1:9573548-9573567 None:intergenic 40.0%
AAGAACAAACGTTCAACTGG+TGG - chr6_1:9573598-9573617 None:intergenic 40.0%
!! TCAAGGGAGTGTTTGAGATT+TGG - chr6_1:9573670-9573689 None:intergenic 40.0%
GTGGTTGAGTGTAAGTTCAA+GGG - chr6_1:9573686-9573705 None:intergenic 40.0%
AGTGGTTGAGTGTAAGTTCA+AGG - chr6_1:9573687-9573706 None:intergenic 40.0%
TGATGTTACCAACAAGAAGG+AGG - chr6_1:9573711-9573730 None:intergenic 40.0%
!! ACATAGTTGATGATAGGGTG+TGG - chr6_1:9573751-9573770 None:intergenic 40.0%
!! CTAGGGACATAGTTGATGAT+AGG - chr6_1:9573757-9573776 None:intergenic 40.0%
! GTCACTCTTTTTCCTAACCA+TGG + chr6_1:9573919-9573938 Msa0873940:CDS 40.0%
! ATTTTCCATCAACAGCTGCA+TGG - chr6_1:9573969-9573988 None:intergenic 40.0%
AGGTGTTAGATCTTGAGGTA+AGG - chr6_1:9574061-9574080 None:intergenic 40.0%
TCCATTATAAGAGACCCCAT+AGG + chr6_1:9574093-9574112 Msa0873940:CDS 40.0%
CCATTATAAGAGACCCCATA+GGG + chr6_1:9574094-9574113 Msa0873940:CDS 40.0%
! AAAGGGTGGTTGAATTTTGG+TGG + chr6_1:9574135-9574154 Msa0873940:CDS 40.0%
! TGCTTATTTGTTGGCATGTG+CGG + chr6_1:9574335-9574354 Msa0873940:CDS 40.0%
! TTAATTGGTGGATCCAAACG+TGG - chr6_1:9574420-9574439 None:intergenic 40.0%
!!! ATTAGTTTTGGGTGAAACCG+AGG + chr6_1:9574473-9574492 Msa0873940:CDS 40.0%
AAATGGTGTGTTGAAGGGTT+TGG + chr6_1:9574563-9574582 Msa0873940:CDS 40.0%
TGTTGAAGGGTTTGGAGAAT+TGG + chr6_1:9574571-9574590 Msa0873940:CDS 40.0%
CTACAATGAGTGAGACAGAT+AGG + chr6_1:9574610-9574629 Msa0873940:CDS 40.0%
AACATCAAACCTAGGTGATC+CGG - chr6_1:9574649-9574668 None:intergenic 40.0%
! TGGTGGAATTGAGATTGGTT+TGG + chr6_1:9574767-9574786 Msa0873940:CDS 40.0%
AGGGAGGGAAGAAATTGATG+AGG - chr6_1:9573466-9573485 None:intergenic 45.0%
TCAATTTCTTCCCTCCCTTG+TGG + chr6_1:9573468-9573487 Msa0873940:CDS 45.0%
CTTTGTGAGATTGTGCCACA+AGG - chr6_1:9573486-9573505 None:intergenic 45.0%
!!! GTTGGGGGGGTTTCATTTTT+TGG - chr6_1:9573532-9573551 None:intergenic 45.0%
TGAAGGGAAAAGTAGTTGGG+GGG - chr6_1:9573546-9573565 None:intergenic 45.0%
GTGAAGGGAAAAGTAGTTGG+GGG - chr6_1:9573547-9573566 None:intergenic 45.0%
AACCACTTCCTCCTTCTTGT+TGG + chr6_1:9573700-9573719 Msa0873940:CDS 45.0%
TACCAACAAGAAGGAGGAAG+TGG - chr6_1:9573705-9573724 None:intergenic 45.0%
ATAGGGTGTGGTGAATCTTG+TGG - chr6_1:9573739-9573758 None:intergenic 45.0%
CCCTATGGGGTCTCTTATAA+TGG - chr6_1:9574097-9574116 None:intergenic 45.0%
TTTCTATTGCCGGATCACCT+AGG + chr6_1:9574637-9574656 Msa0873940:CDS 45.0%
AGGGAGGGAAGAAATTGATG+AGG - chr6_1:9573466-9573485 None:intergenic 45.0%
TCAATTTCTTCCCTCCCTTG+TGG + chr6_1:9573468-9573487 Msa0873940:CDS 45.0%
CTTTGTGAGATTGTGCCACA+AGG - chr6_1:9573486-9573505 None:intergenic 45.0%
!!! GTTGGGGGGGTTTCATTTTT+TGG - chr6_1:9573532-9573551 None:intergenic 45.0%
TGAAGGGAAAAGTAGTTGGG+GGG - chr6_1:9573546-9573565 None:intergenic 45.0%
GTGAAGGGAAAAGTAGTTGG+GGG - chr6_1:9573547-9573566 None:intergenic 45.0%
AACCACTTCCTCCTTCTTGT+TGG + chr6_1:9573700-9573719 Msa0873940:CDS 45.0%
TACCAACAAGAAGGAGGAAG+TGG - chr6_1:9573705-9573724 None:intergenic 45.0%
ATAGGGTGTGGTGAATCTTG+TGG - chr6_1:9573739-9573758 None:intergenic 45.0%
CCCTATGGGGTCTCTTATAA+TGG - chr6_1:9574097-9574116 None:intergenic 45.0%
TTTCTATTGCCGGATCACCT+AGG + chr6_1:9574637-9574656 Msa0873940:CDS 45.0%
CGTTAGCGCACTAGAAAGAG+CGG + chr6_1:9573370-9573389 Msa0873940:intron 50.0%
CACTAGAAAGAGCGGACAGA+CGG + chr6_1:9573378-9573397 Msa0873940:intron 50.0%
ACTAGAAAGAGCGGACAGAC+GGG + chr6_1:9573379-9573398 Msa0873940:intron 50.0%
TGAGATTGTGCCACAAGGGA+GGG - chr6_1:9573481-9573500 None:intergenic 50.0%
GAAGGGAAAAGTAGTTGGGG+GGG - chr6_1:9573545-9573564 None:intergenic 50.0%
ACACACCATGCAGCTGTTGA+TGG + chr6_1:9573961-9573980 Msa0873940:CDS 50.0%
! TGTGGATTGTAGGCCACGTT+TGG + chr6_1:9574404-9574423 Msa0873940:CDS 50.0%
CGTTAGCGCACTAGAAAGAG+CGG + chr6_1:9573370-9573389 Msa0873940:intron 50.0%
CACTAGAAAGAGCGGACAGA+CGG + chr6_1:9573378-9573397 Msa0873940:intron 50.0%
ACTAGAAAGAGCGGACAGAC+GGG + chr6_1:9573379-9573398 Msa0873940:intron 50.0%
TGAGATTGTGCCACAAGGGA+GGG - chr6_1:9573481-9573500 None:intergenic 50.0%
GAAGGGAAAAGTAGTTGGGG+GGG - chr6_1:9573545-9573564 None:intergenic 50.0%
ACACACCATGCAGCTGTTGA+TGG + chr6_1:9573961-9573980 Msa0873940:CDS 50.0%
! TGTGGATTGTAGGCCACGTT+TGG + chr6_1:9574404-9574423 Msa0873940:CDS 50.0%
GTGAGATTGTGCCACAAGGG+AGG - chr6_1:9573482-9573501 None:intergenic 55.0%
GTGAGATTGTGCCACAAGGG+AGG - chr6_1:9573482-9573501 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 9572903 9574854 9572903 ID=Msa0873940;Name=Msa0873940
chr6_1 mRNA 9572903 9574854 9572903 ID=Msa0873940-mRNA-1;Parent=Msa0873940;Name=Msa0873940-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|0.5|1|1|2|0|484
chr6_1 exon 9572903 9572941 9572903 ID=Msa0873940-mRNA-1:exon:2903;Parent=Msa0873940-mRNA-1
chr6_1 exon 9573439 9574854 9573439 ID=Msa0873940-mRNA-1:exon:2904;Parent=Msa0873940-mRNA-1
chr6_1 CDS 9572903 9572941 9572903 ID=Msa0873940-mRNA-1:cds;Parent=Msa0873940-mRNA-1
chr6_1 CDS 9573439 9574854 9573439 ID=Msa0873940-mRNA-1:cds;Parent=Msa0873940-mRNA-1
Gene Sequence

>Msa0873940

ATGTCGGAATCTATCTTTCACGACATATTTTCAGTCATGTCAACAGATTGCCAAGCTTCACTTCCTCATCAATTTCTTCCCTCCCTTGTGGCACAATCTCACAAAGTTCATCAAGTTTTTTCAATATCACCAAAAAATGAAACCCCCCCAACTACTTTTCCCTTCACTTTCTTTGACACACTTTGGGTAAGATTTCCACCAGTTGAACGTTTGTTCTTCTATGAACACACCAATTTGTCTACCAATTTTTTCTTTGATTCCATTCTTCCAAATCTCAAACACTCCCTTGAACTTACACTCAACCACTTCCTCCTTCTTGTTGGTAACATCACATGGCCACAAGATTCACCACACCCTATCATCAACTATGTCCCTAGTGATTCTATTCCCTTAATTGTAGCTGAATCAAATGAAAATTTCAACCTTTTATGTTCAAATCTTTGTGAAGTTGAAAAAAAACAATACTTGATCCCAACTTTGGAGATTTCACATGAAAAAGCATCAATTATTTCACTACAAGTCACTCTTTTTCCTAACCATGGATTTTGTATTGGTATAACTACACACCATGCAGCTGTTGATGGAAAATCTTCAACTTTGTTTATGAAAGCTTGGTCTTATTTTTGTTCCAACCTTGAAAAAAATACACCCTTTTTGTCCTTACCTCAAGATCTAACACCTTTTTTTGATAGGTCCATTATAAGAGACCCCATAGGGATAAATGAGATTTATTCAAAAGGGTGGTTGAATTTTGGTGGAGAAACAAATAATCGAAGCTTGAAGGTTTGGGAAACAATTAATACAATAAAGGGTGAAGCAATCAAAGGTATTTTTCAATTGTCACCTTTGGATATTCAAAAGCTTAAGAAACATGCACAATCCAAGATTGAAAAAAATAACAAGGTTATTAAGCTTTCAACTTTTTCAGTTACTTGTGCTTATTTGTTGGCATGTGCGGTTAAAGTTGACCAACCAAAATCCAACAAGTTAGCTTTTATTTTTAGTGTGGATTGTAGGCCACGTTTGGATCCACCAATTAATGCAAATTATTTTGGAAATTGTGTTGTGTCAAAATTAGTTTTGGGTGAAACCGAGGAATTTTTAAAAGAAGATGGATTTATTAGTGCTCTTGAAGGGATAAGTGATATGTTGAAGGGTTTGGAAAATGGTGTGTTGAAGGGTTTGGAGAATTGGATGTCAATAATGCAATCTACAATGAGTGAGACAGATAGGATATTTTCTATTGCCGGATCACCTAGGTTTGATGTTTATAGTTTTGATTTTGGATGGGGTAAACCTAAGAAAGTTGATGTTACTTCTATTGACAAAACAGGAGCTTTTTCTCTTTCGGAGAATAAGAATAATGATGGTGGAATTGAGATTGGTTTGGCTTTGAACAAACAACAAATGGAGGTTTTTGCTCAACTTTTTGTTCAAGGACTTGAATCCTTGTAA

Protein sequence

>Msa0873940

MSESIFHDIFSVMSTDCQASLPHQFLPSLVAQSHKVHQVFSISPKNETPPTTFPFTFFDTLWVRFPPVERLFFYEHTNLSTNFFFDSILPNLKHSLELTLNHFLLLVGNITWPQDSPHPIINYVPSDSIPLIVAESNENFNLLCSNLCEVEKKQYLIPTLEISHEKASIISLQVTLFPNHGFCIGITTHHAAVDGKSSTLFMKAWSYFCSNLEKNTPFLSLPQDLTPFFDRSIIRDPIGINEIYSKGWLNFGGETNNRSLKVWETINTIKGEAIKGIFQLSPLDIQKLKKHAQSKIEKNNKVIKLSTFSVTCAYLLACAVKVDQPKSNKLAFIFSVDCRPRLDPPINANYFGNCVVSKLVLGETEEFLKEDGFISALEGISDMLKGLENGVLKGLENWMSIMQSTMSETDRIFSIAGSPRFDVYSFDFGWGKPKKVDVTSIDKTGAFSLSENKNNDGGIEIGLALNKQQMEVFAQLFVQGLESL*