Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219340 | XP_003596781.2 | 96.056 | 431 | 17 | 0 | 1 | 431 | 62 | 492 | 0.0 | 865 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219340 | sp|Q93ZB9|FACR3_ARATH | 60.187 | 427 | 169 | 1 | 1 | 427 | 66 | 491 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219340 | G7IRD7 | 96.056 | 431 | 17 | 0 | 1 | 431 | 62 | 492 | 0.0 | 865 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008440 | Msa0219340 | 0.808961 | 2.394535e-50 | -8.615850e-47 |
| Msa0015960 | Msa0219340 | 0.803522 | 3.349354e-49 | -8.615850e-47 |
| Msa0016080 | Msa0219340 | 0.800253 | 1.571729e-48 | -8.615850e-47 |
| Msa0161130 | Msa0219340 | 0.809178 | 2.151253e-50 | -8.615850e-47 |
| Msa0161170 | Msa0219340 | 0.801107 | 1.052636e-48 | -8.615850e-47 |
| Msa0210610 | Msa0219340 | 0.841892 | 3.607222e-58 | -8.615850e-47 |
| Msa0219340 | Msa0219350 | 0.852364 | 4.845757e-61 | -8.615850e-47 |
| Msa0219340 | Msa0289960 | 0.834721 | 2.544468e-56 | -8.615850e-47 |
| Msa0219340 | Msa0297900 | 0.844434 | 7.580228e-59 | -8.615850e-47 |
| Msa0219340 | Msa0297910 | 0.906378 | 1.582421e-80 | -8.615850e-47 |
| Msa0219340 | Msa0343210 | 0.805517 | 1.284787e-49 | -8.615850e-47 |
| Msa0219340 | Msa0383480 | 0.801211 | 1.002271e-48 | -8.615850e-47 |
| Msa0219340 | Msa0661410 | 0.801316 | 9.538581e-49 | -8.615850e-47 |
| Msa0219340 | Msa0661420 | 0.807645 | 4.567337e-50 | -8.615850e-47 |
| Msa0219340 | Msa0810330 | 0.800117 | 1.675331e-48 | -8.615850e-47 |
| Msa0219340 | Msa0931620 | 0.908281 | 2.030060e-81 | -8.615850e-47 |
| Msa0219340 | Msa1012800 | 0.816499 | 5.358981e-52 | -8.615850e-47 |
| Msa0219340 | Msa1131270 | 0.853842 | 1.828309e-61 | -8.615850e-47 |
| Msa0219340 | Msa1202800 | 0.816897 | 4.362609e-52 | -8.615850e-47 |
| Msa0219340 | Msa1203440 | 0.858648 | 7.129082e-63 | -8.615850e-47 |
| Msa0219340 | Msa1255210 | 0.811972 | 5.356721e-51 | -8.615850e-47 |
| Msa0219340 | Msa1255690 | 0.836560 | 8.711377e-57 | -8.615850e-47 |
| Msa0219340 | Msa1295650 | 0.813824 | 2.104387e-51 | -8.615850e-47 |
| Msa0219340 | Msa1348540 | 0.822318 | 2.526428e-53 | -8.615850e-47 |
| Msa0219340 | Msa1416130 | 0.833651 | 4.718157e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219340 | MtrunA17_Chr2g0321181 | 96.056 | 431 | 17 | 0 | 1 | 431 | 62 | 492 | 0.0 | 865 |
| Msa0219340 | MtrunA17_Chr4g0026701 | 71.395 | 430 | 123 | 0 | 1 | 430 | 63 | 492 | 0.0 | 663 |
| Msa0219340 | MtrunA17_Chr2g0321201 | 69.535 | 430 | 130 | 1 | 1 | 430 | 64 | 492 | 0.0 | 640 |
| Msa0219340 | MtrunA17_Chr4g0026691 | 67.209 | 430 | 141 | 0 | 1 | 430 | 62 | 491 | 0.0 | 619 |
| Msa0219340 | MtrunA17_Chr4g0026771 | 45.349 | 430 | 231 | 2 | 5 | 430 | 63 | 492 | 1.81e-133 | 392 |
| Msa0219340 | MtrunA17_Chr4g0026711 | 44.884 | 430 | 233 | 2 | 5 | 430 | 66 | 495 | 2.22e-133 | 392 |
| Msa0219340 | MtrunA17_Chr6g0465391 | 44.804 | 433 | 202 | 6 | 1 | 430 | 62 | 460 | 5.16e-123 | 365 |
| Msa0219340 | MtrunA17_Chr1g0176054 | 38.652 | 445 | 246 | 8 | 1 | 430 | 176 | 608 | 2.39e-98 | 306 |
| Msa0219340 | MtrunA17_Chr5g0419501 | 34.524 | 336 | 163 | 3 | 5 | 337 | 66 | 347 | 4.99e-60 | 199 |
| Msa0219340 | MtrunA17_Chr4g0026891 | 44.382 | 178 | 94 | 3 | 5 | 178 | 63 | 239 | 7.32e-44 | 155 |
| Msa0219340 | MtrunA17_Chr5g0431251 | 49.612 | 129 | 65 | 0 | 120 | 248 | 2 | 130 | 3.90e-42 | 145 |
| Msa0219340 | MtrunA17_Chr4g0026911 | 40.957 | 188 | 103 | 3 | 248 | 430 | 3 | 187 | 1.28e-40 | 143 |
| Msa0219340 | MtrunA17_Chr5g0431281 | 38.710 | 186 | 108 | 3 | 248 | 430 | 28 | 210 | 1.25e-34 | 128 |
| Msa0219340 | MtrunA17_Chr6g0465381 | 45.098 | 153 | 81 | 2 | 182 | 331 | 1 | 153 | 7.74e-32 | 119 |
| Msa0219340 | MtrunA17_Chr5g0419491 | 45.745 | 94 | 51 | 0 | 337 | 430 | 7 | 100 | 1.93e-23 | 94.4 |
| Msa0219340 | MtrunA17_Chr4g0026901 | 63.793 | 58 | 21 | 0 | 166 | 223 | 16 | 73 | 2.96e-22 | 90.5 |
| Msa0219340 | MtrunA17_Chr5g0431271 | 52.239 | 67 | 32 | 0 | 182 | 248 | 1 | 67 | 2.70e-20 | 86.3 |
| Msa0219340 | MtrunA17_Chr5g0431261 | 36.667 | 90 | 57 | 0 | 248 | 337 | 3 | 92 | 1.55e-14 | 68.9 |
| Msa0219340 | MtrunA17_Chr5g0431241 | 50.000 | 64 | 30 | 1 | 5 | 68 | 66 | 127 | 2.16e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219340 | AT4G33790.1 | 60.187 | 427 | 169 | 1 | 1 | 427 | 66 | 491 | 0.0 | 536 |
| Msa0219340 | AT4G33790.2 | 61.478 | 379 | 145 | 1 | 49 | 427 | 1 | 378 | 1.81e-174 | 493 |
| Msa0219340 | AT3G44540.1 | 52.083 | 432 | 205 | 2 | 1 | 430 | 61 | 492 | 3.48e-159 | 459 |
| Msa0219340 | AT5G22500.1 | 51.168 | 428 | 205 | 3 | 5 | 430 | 65 | 490 | 2.87e-157 | 454 |
| Msa0219340 | AT3G44550.1 | 49.885 | 433 | 210 | 4 | 4 | 430 | 64 | 495 | 1.28e-148 | 432 |
| Msa0219340 | AT3G44560.1 | 49.885 | 433 | 210 | 4 | 4 | 430 | 64 | 495 | 6.96e-141 | 412 |
| Msa0219340 | AT3G44550.2 | 51.042 | 384 | 182 | 3 | 52 | 430 | 4 | 386 | 4.57e-136 | 396 |
| Msa0219340 | AT5G22420.4 | 51.507 | 365 | 172 | 4 | 54 | 417 | 6 | 366 | 1.61e-129 | 379 |
| Msa0219340 | AT5G22500.2 | 52.096 | 334 | 157 | 2 | 5 | 337 | 65 | 396 | 2.72e-125 | 369 |
| Msa0219340 | AT5G22420.1 | 49.451 | 364 | 179 | 4 | 55 | 417 | 43 | 402 | 4.51e-122 | 361 |
| Msa0219340 | AT5G22420.3 | 50.852 | 352 | 168 | 4 | 67 | 417 | 3 | 350 | 7.66e-122 | 358 |
| Msa0219340 | AT5G22420.6 | 50.852 | 352 | 168 | 4 | 67 | 417 | 3 | 350 | 7.66e-122 | 358 |
| Msa0219340 | AT3G44560.3 | 49.606 | 381 | 188 | 3 | 4 | 381 | 64 | 443 | 4.11e-121 | 360 |
| Msa0219340 | AT3G44560.2 | 50.289 | 346 | 168 | 3 | 4 | 346 | 64 | 408 | 3.43e-111 | 333 |
| Msa0219340 | AT5G22420.5 | 49.051 | 316 | 156 | 4 | 103 | 417 | 4 | 315 | 5.08e-103 | 309 |
| Msa0219340 | AT5G22420.2 | 49.164 | 299 | 147 | 4 | 120 | 417 | 2 | 296 | 4.31e-98 | 296 |
| Msa0219340 | AT5G22420.7 | 49.164 | 299 | 147 | 4 | 120 | 417 | 2 | 296 | 4.31e-98 | 296 |
| Msa0219340 | AT3G11980.1 | 38.095 | 441 | 255 | 7 | 1 | 430 | 180 | 613 | 4.52e-94 | 296 |
| Msa0219340 | AT3G44540.2 | 52.590 | 251 | 118 | 1 | 1 | 250 | 61 | 311 | 1.58e-91 | 279 |
| Msa0219340 | AT3G44540.3 | 52.590 | 251 | 118 | 1 | 1 | 250 | 61 | 311 | 1.58e-91 | 279 |
| Msa0219340 | AT3G56700.2 | 37.413 | 433 | 238 | 8 | 1 | 426 | 133 | 539 | 6.20e-86 | 273 |
| Msa0219340 | AT3G56700.1 | 35.104 | 433 | 227 | 9 | 1 | 426 | 133 | 518 | 8.91e-74 | 240 |
Find 97 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCCCAATCAATAATTT+TGG | 0.099596 | 2_1:-66898145 | None:intergenic |
| ATGCTACTTGCTTCCTTTAA+AGG | 0.109660 | 2_1:+66897318 | Msa0219340:CDS |
| TTTATTAGAGCTACTAAATA+TGG | 0.217777 | 2_1:+66896393 | Msa0219340:intron |
| AAGTAATTAAGTACCTTTAA+AGG | 0.225958 | 2_1:-66897331 | None:intergenic |
| GGAGAAATTGAATCAATTTC+AGG | 0.252213 | 2_1:+66896208 | Msa0219340:CDS |
| CGCTACGGTGTGTCACTAAA+TGG | 0.280988 | 2_1:+66896143 | Msa0219340:CDS |
| TCCAGGACTTGACATTAATA+TGG | 0.292005 | 2_1:+66896169 | Msa0219340:CDS |
| TAAATTGCTGAAGGAAAATC+AGG | 0.305746 | 2_1:+66893503 | Msa0219340:CDS |
| CCTTTCCCTGGATGGGTTGA+AGG | 0.316231 | 2_1:+66896534 | Msa0219340:CDS |
| GTGTGTGATATGTAGATAAT+AGG | 0.330986 | 2_1:+66893468 | None:intergenic |
| TTCCATACCCAAGTCCTTCA+TGG | 0.332535 | 2_1:-66896264 | None:intergenic |
| CTAAAAGTACGATACGTAAT+TGG | 0.334933 | 2_1:-66897175 | None:intergenic |
| CAAGGATGGAAAATCGATTA+AGG | 0.341341 | 2_1:+66897240 | Msa0219340:CDS |
| TTGATCCCAAAATTATTGAT+TGG | 0.345050 | 2_1:+66898139 | Msa0219340:CDS |
| CTGGATGGGTTGAAGGCTTA+AGG | 0.363182 | 2_1:+66896541 | Msa0219340:CDS |
| CTGCCTTACTTGTTCTTCAA+TGG | 0.371170 | 2_1:+66897949 | Msa0219340:CDS |
| TATATAGTCCCCGAAAATAT+TGG | 0.376701 | 2_1:-66897876 | None:intergenic |
| AATGCTTGTAGAAACTTTCA+AGG | 0.385570 | 2_1:+66896455 | Msa0219340:CDS |
| TTAGTAAACACATATGTGTT+TGG | 0.387989 | 2_1:-66896420 | None:intergenic |
| GACTATATACTGACCTAAAC+CGG | 0.388295 | 2_1:+66897890 | Msa0219340:CDS |
| TAAAGAAGGCTTGAATTTGA+AGG | 0.399264 | 2_1:+66893584 | Msa0219340:CDS |
| GCATTGGGTATAAATACATT+AGG | 0.408311 | 2_1:+66893817 | Msa0219340:CDS |
| TGATCCCAAAATTATTGATT+GGG | 0.408779 | 2_1:+66898140 | Msa0219340:CDS |
| TGCAACGACTACACTGTCTA+TGG | 0.409749 | 2_1:-66896876 | None:intergenic |
| GTGCTTGTCCACGTTTCAAC+AGG | 0.413950 | 2_1:+66893886 | Msa0219340:CDS |
| GTGTCACTAAATGGAGTTCC+AGG | 0.414231 | 2_1:+66896152 | Msa0219340:CDS |
| CTTAAGCCTTCAACCCATCC+AGG | 0.415537 | 2_1:-66896540 | None:intergenic |
| TTTCCATCCTTGTTTATCAA+TGG | 0.421890 | 2_1:-66897229 | None:intergenic |
| TGCAATTATAGTAGCTATGA+TGG | 0.435605 | 2_1:+66897093 | Msa0219340:CDS |
| GCAAATCTCCTCTTCTAGAA+TGG | 0.446223 | 2_1:-66893610 | None:intergenic |
| TGTCTCTGAAAAGCTGACTT+TGG | 0.449863 | 2_1:+66893545 | Msa0219340:CDS |
| TGAAGTGGCCATGAAGGACT+TGG | 0.457057 | 2_1:+66896256 | Msa0219340:CDS |
| TCCATATTAATGTCAAGTCC+TGG | 0.464243 | 2_1:-66896170 | None:intergenic |
| CCTGGAGACATTTCTAAAGA+AGG | 0.474431 | 2_1:+66893570 | Msa0219340:CDS |
| GGGAGGAGGACTCATATTAG+AGG | 0.478325 | 2_1:+66896112 | Msa0219340:CDS |
| TAGAGAACCTTTCCCTGGAT+GGG | 0.479839 | 2_1:+66896527 | Msa0219340:CDS |
| TACAGATACGATGTTGCATT+GGG | 0.481635 | 2_1:+66893802 | Msa0219340:intron |
| GACAGTGTAGTCGTTGCATA+TGG | 0.482402 | 2_1:+66896881 | Msa0219340:CDS |
| TTAGCAACATAGCTAGCTTC+CGG | 0.485475 | 2_1:+66897281 | Msa0219340:CDS |
| GCATTTACCACCATGTCTGC+TGG | 0.493984 | 2_1:-66897073 | None:intergenic |
| AGGAAAGTTAACAAGCTTCA+TGG | 0.499436 | 2_1:+66896907 | Msa0219340:CDS |
| TAATATGGAAAAGAAATTAG+TGG | 0.500685 | 2_1:+66896184 | Msa0219340:CDS |
| ATATGATATGATCACTAGGT+TGG | 0.502614 | 2_1:-66897126 | None:intergenic |
| ATACAGATACGATGTTGCAT+TGG | 0.502824 | 2_1:+66893801 | Msa0219340:intron |
| AGCATATGAACATGTATCTC+CGG | 0.504087 | 2_1:-66897300 | None:intergenic |
| CCTTCTTTAGAAATGTCTCC+AGG | 0.506599 | 2_1:-66893570 | None:intergenic |
| GGCCATGAAGGACTTGGGTA+TGG | 0.510522 | 2_1:+66896262 | Msa0219340:CDS |
| ATAGAGAACCTTTCCCTGGA+TGG | 0.514953 | 2_1:+66896526 | Msa0219340:CDS |
| TATGTGTTTACTAAAGCAAT+GGG | 0.517278 | 2_1:+66896429 | Msa0219340:CDS |
| ACTTATAGAGAACCTTTCCC+TGG | 0.521820 | 2_1:+66896522 | Msa0219340:CDS |
| TGTGTGATATGTAGATAATA+GGG | 0.522338 | 2_1:+66893469 | None:intergenic |
| GGACTTGTTTAAATTGCTGA+AGG | 0.524442 | 2_1:+66893494 | Msa0219340:CDS |
| ATGCCATTGAAGAACAAGTA+AGG | 0.526421 | 2_1:-66897952 | None:intergenic |
| AATGCATACTTGAAGATACC+AGG | 0.527697 | 2_1:-66898189 | None:intergenic |
| GATGGAAAATCGATTAAGGT+TGG | 0.528376 | 2_1:+66897244 | Msa0219340:CDS |
| TTGAATCAATTTCAGGCACA+TGG | 0.537509 | 2_1:+66896215 | Msa0219340:CDS |
| GTAGTCGTTGCATATGGTAA+AGG | 0.544268 | 2_1:+66896887 | Msa0219340:CDS |
| CATCTAACAGGGACTAGAAG+TGG | 0.546171 | 2_1:+66897837 | Msa0219340:intron |
| GAAAAGCTGACTTTGGTACC+TGG | 0.548218 | 2_1:+66893552 | Msa0219340:CDS |
| ACTTGAAGATACCAGGGATG+TGG | 0.554747 | 2_1:-66898182 | None:intergenic |
| TATGTGTGTGGCGAGGGAGG+AGG | 0.556285 | 2_1:+66896098 | Msa0219340:CDS |
| TGATATTGAAGTGGCCATGA+AGG | 0.557614 | 2_1:+66896250 | Msa0219340:CDS |
| GAAGGAATCCATTCTAGAAG+AGG | 0.557792 | 2_1:+66893602 | Msa0219340:CDS |
| CATTGAAGAACAAGTAAGGC+AGG | 0.559598 | 2_1:-66897948 | None:intergenic |
| CCTTCAACCCATCCAGGGAA+AGG | 0.559711 | 2_1:-66896534 | None:intergenic |
| GCAGCTTATGTGTGTGGCGA+GGG | 0.560041 | 2_1:+66896092 | Msa0219340:intron |
| CAACAACAAAATTTGATGAA+AGG | 0.560811 | 2_1:+66893664 | Msa0219340:CDS |
| AACTGAACATGATATTGAAG+TGG | 0.563421 | 2_1:+66896241 | Msa0219340:CDS |
| TGAGCAGATACCAGCAGACA+TGG | 0.567707 | 2_1:+66897063 | Msa0219340:intron |
| TTCATGAATATCCACATCCC+TGG | 0.572586 | 2_1:+66898171 | Msa0219340:CDS |
| TCTATAAGTGCTAGTAACAA+TGG | 0.574995 | 2_1:-66896508 | None:intergenic |
| AATCAGTACAGTTATGCGGT+TGG | 0.578216 | 2_1:+66897915 | Msa0219340:CDS |
| AAACCATTGATAAACAAGGA+TGG | 0.580526 | 2_1:+66897226 | Msa0219340:CDS |
| TTAGAGCTACTAAATATGGA+TGG | 0.583899 | 2_1:+66896397 | Msa0219340:intron |
| ATATGTGTTTACTAAAGCAA+TGG | 0.585671 | 2_1:+66896428 | Msa0219340:CDS |
| TGCAGCTTATGTGTGTGGCG+AGG | 0.595421 | 2_1:+66896091 | Msa0219340:intron |
| TTAAGCCTTCAACCCATCCA+GGG | 0.602292 | 2_1:-66896539 | None:intergenic |
| GATCATATCATATATCATGT+TGG | 0.604822 | 2_1:+66897136 | Msa0219340:CDS |
| TGATATATGATATGATCACT+AGG | 0.608722 | 2_1:-66897130 | None:intergenic |
| TTAGAGGATCCTCATCGCTA+CGG | 0.609694 | 2_1:+66896128 | Msa0219340:CDS |
| TACCTTGCAGCTTATGTGTG+TGG | 0.614766 | 2_1:+66896086 | Msa0219340:intron |
| TGAAGGACTTGGGTATGGAA+AGG | 0.621339 | 2_1:+66896267 | Msa0219340:CDS |
| GAAGTGGCCATGAAGGACTT+GGG | 0.622183 | 2_1:+66896257 | Msa0219340:CDS |
| TAAGTGCTAGTAACAATGGT+GGG | 0.626774 | 2_1:-66896504 | None:intergenic |
| GCTTATGTGTGTGGCGAGGG+AGG | 0.631650 | 2_1:+66896095 | Msa0219340:intron |
| TATACCAACCTGTTGAAACG+TGG | 0.633034 | 2_1:-66893894 | None:intergenic |
| ATGCATACTTGAAGATACCA+GGG | 0.639179 | 2_1:-66898188 | None:intergenic |
| CTATTAGCCGTAAAACAAGA+AGG | 0.639438 | 2_1:+66898093 | Msa0219340:CDS |
| TATGGAAAAGAAATTAGTGG+AGG | 0.640125 | 2_1:+66896187 | Msa0219340:CDS |
| TGATATGTAGATAATAGGGA+AGG | 0.651637 | 2_1:+66893473 | None:intergenic |
| ATAAGTGCTAGTAACAATGG+TGG | 0.663958 | 2_1:-66896505 | None:intergenic |
| AAATTGCTGAAGGAAAATCA+GGG | 0.670151 | 2_1:+66893504 | Msa0219340:CDS |
| CGTAATTGGATTTCTAACAG+AGG | 0.693256 | 2_1:-66897161 | None:intergenic |
| AGTGACACACCGTAGCGATG+AGG | 0.698254 | 2_1:-66896137 | None:intergenic |
| GGAAAATCAGTACAGTTATG+CGG | 0.717584 | 2_1:+66897911 | Msa0219340:CDS |
| GCAGATACCAGCAGACATGG+TGG | 0.717961 | 2_1:+66897066 | Msa0219340:intron |
| AAAGTTAACAAGCTTCATGG+CGG | 0.733783 | 2_1:+66896910 | Msa0219340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAAAAAAAATTTCTTTA+TGG | + | chr2_1:66893740-66893759 | Msa0219340:intron | 10.0% |
| !! | TATAGTTAATAATAGTATAT+TGG | + | chr2_1:66894076-66894095 | Msa0219340:intron | 10.0% |
| !!! | TTTTGTATTTTATTTTGTTA+GGG | - | chr2_1:66894410-66894429 | None:intergenic | 10.0% |
| !!! | TTTTGTATTTTATTTTGTTA+GGG | + | chr2_1:66894410-66894429 | Msa0219340:intron | 10.0% |
| !! | TTAGTAAATGTAAATATATT+AGG | - | chr2_1:66894485-66894504 | None:intergenic | 10.0% |
| !! | TGTAAACTAATAAATTTAAA+TGG | + | chr2_1:66894542-66894561 | Msa0219340:intron | 10.0% |
| !!! | TATAATTTTTCTCTAATTTT+AGG | + | chr2_1:66896774-66896793 | Msa0219340:intron | 10.0% |
| !!! | AAATATTATAATAAAGCATT+TGG | + | chr2_1:66898006-66898025 | Msa0219340:intron | 10.0% |
| !!! | TTTGTATTTTATTTTGTTAG+GGG | - | chr2_1:66894411-66894430 | None:intergenic | 15.0% |
| !!! | GTTTTGTATTTTATTTTGTT+AGG | - | chr2_1:66894409-66894428 | None:intergenic | 15.0% |
| !! | AATTAAAAAAAATACACATG+TGG | - | chr2_1:66894249-66894268 | None:intergenic | 15.0% |
| !!! | GTTTTGTATTTTATTTTGTT+AGG | + | chr2_1:66894409-66894428 | Msa0219340:intron | 15.0% |
| !!! | TTTGTATTTTATTTTGTTAG+GGG | + | chr2_1:66894411-66894430 | Msa0219340:intron | 15.0% |
| !!! | CAAATTAGAGAAATTATTTT+CGG | + | chr2_1:66894813-66894832 | Msa0219340:intron | 15.0% |
| !! | TATTCACTTACATTTAAATT+GGG | - | chr2_1:66894845-66894864 | None:intergenic | 15.0% |
| !! | TTATTCACTTACATTTAAAT+TGG | - | chr2_1:66894846-66894865 | None:intergenic | 15.0% |
| !! | AAAAATGATTGATGAAATTT+AGG | + | chr2_1:66895050-66895069 | Msa0219340:intron | 15.0% |
| !!! | TACTTTTTTTTTTCTTTTGA+AGG | - | chr2_1:66895289-66895308 | None:intergenic | 15.0% |
| !!! | AATACGTTCATTATTTTTTT+AGG | + | chr2_1:66895373-66895392 | Msa0219340:intron | 15.0% |
| !!! | ATACGTTCATTATTTTTTTA+GGG | + | chr2_1:66895374-66895393 | Msa0219340:intron | 15.0% |
| !! | TATGTTTATATGTTATTGTA+TGG | + | chr2_1:66895402-66895421 | Msa0219340:intron | 15.0% |
| !! | ATTATTGAACTAATATTTCA+TGG | + | chr2_1:66896690-66896709 | Msa0219340:intron | 15.0% |
| !! | AACAGGAAAAAAAAATTATT+TGG | - | chr2_1:66896967-66896986 | None:intergenic | 15.0% |
| !!! | ATAATTTTTTTTTCCTGTTT+TGG | + | chr2_1:66896968-66896987 | Msa0219340:intron | 15.0% |
| !! | TGATAGTACAATATTAATAT+TGG | + | chr2_1:66897030-66897049 | Msa0219340:intron | 15.0% |
| !!! | AAATCAAAATCTTTTACAAA+AGG | - | chr2_1:66897391-66897410 | None:intergenic | 15.0% |
| !!! | TTTTGTAAAAGATTTTGATT+TGG | + | chr2_1:66897390-66897409 | Msa0219340:intron | 15.0% |
| !! | TATTCATGAATTAAATGATT+TGG | + | chr2_1:66897546-66897565 | Msa0219340:intron | 15.0% |
| !! | ATTCATGAATTAAATGATTT+GGG | + | chr2_1:66897547-66897566 | Msa0219340:intron | 15.0% |
| !! | AATTTCTATATATTTCTCTT+TGG | + | chr2_1:66897701-66897720 | Msa0219340:intron | 15.0% |
| !!! | TTTAATTAATGCATCTTTTT+TGG | - | chr2_1:66898230-66898249 | None:intergenic | 15.0% |
| !!! | CTTTAGTTGAATACATTTTT+TGG | - | chr2_1:66893866-66893885 | None:intergenic | 20.0% |
| !! | CAAAAAATGTATTCAACTAA+AGG | + | chr2_1:66893864-66893883 | Msa0219340:CDS | 20.0% |
| !!! | TTGTATTTTATTTTGTTAGG+GGG | - | chr2_1:66894412-66894431 | None:intergenic | 20.0% |
| !! | ATGAAAATTACCTCTTTAAA+GGG | - | chr2_1:66894649-66894668 | None:intergenic | 20.0% |
| !! | AATGAAAATTACCTCTTTAA+AGG | - | chr2_1:66894650-66894669 | None:intergenic | 20.0% |
| !! | TTGTTAAAATAGATATTTGG+GGG | - | chr2_1:66894708-66894727 | None:intergenic | 20.0% |
| !! | CTTGTTAAAATAGATATTTG+GGG | - | chr2_1:66894709-66894728 | None:intergenic | 20.0% |
| !! | CCTTGTTAAAATAGATATTT+GGG | - | chr2_1:66894710-66894729 | None:intergenic | 20.0% |
| !! | ACCTTGTTAAAATAGATATT+TGG | - | chr2_1:66894711-66894730 | None:intergenic | 20.0% |
| !! | ATTAGGAAGACATTATTAAA+TGG | - | chr2_1:66894919-66894938 | None:intergenic | 20.0% |
| !! | TAATAATTGATGAGTGTATT+AGG | - | chr2_1:66894936-66894955 | None:intergenic | 20.0% |
| !! | ATACACTCATCAATTATTAT+CGG | + | chr2_1:66894937-66894956 | Msa0219340:intron | 20.0% |
| !!! | ATTTTAAACTTCTTAACAAG+AGG | + | chr2_1:66895136-66895155 | Msa0219340:intron | 20.0% |
| !!! | TTTTAAACTTCTTAACAAGA+GGG | + | chr2_1:66895137-66895156 | Msa0219340:intron | 20.0% |
| !!! | TACGTTCATTATTTTTTTAG+GGG | + | chr2_1:66895375-66895394 | Msa0219340:intron | 20.0% |
| !!! | ATTTGACTTTATTATATGGA+TGG | - | chr2_1:66895443-66895462 | None:intergenic | 20.0% |
| !!! | GAAGATTTGACTTTATTATA+TGG | - | chr2_1:66895447-66895466 | None:intergenic | 20.0% |
| !! | TCGATTCAAAAAAATATAAG+TGG | - | chr2_1:66895557-66895576 | None:intergenic | 20.0% |
| !! | AGCATATATATTTCTCAAAA+AGG | + | chr2_1:66895648-66895667 | Msa0219340:intron | 20.0% |
| !!! | ACATAATCACTAGTTTTATT+AGG | - | chr2_1:66895756-66895775 | None:intergenic | 20.0% |
| !!! | ACTACTGAAACTATTATTTT+AGG | - | chr2_1:66895788-66895807 | None:intergenic | 20.0% |
| !! | TAATATGGAAAAGAAATTAG+TGG | + | chr2_1:66896184-66896203 | Msa0219340:CDS | 20.0% |
| !! | TTTATTAGAGCTACTAAATA+TGG | + | chr2_1:66896393-66896412 | Msa0219340:intron | 20.0% |
| !! | TTATCTAACGTAATTAAAGA+TGG | + | chr2_1:66896750-66896769 | Msa0219340:intron | 20.0% |
| !! | AACTCCAAATATTAGAAAAA+TGG | - | chr2_1:66896846-66896865 | None:intergenic | 20.0% |
| !! | AATATTGTACTATCAATTTG+TGG | - | chr2_1:66897025-66897044 | None:intergenic | 20.0% |
| !!! | GTTTTTTGGTGAAATATTTA+AGG | - | chr2_1:66897210-66897229 | None:intergenic | 20.0% |
| !! | AAGTAATTAAGTACCTTTAA+AGG | - | chr2_1:66897334-66897353 | None:intergenic | 20.0% |
| !! | AAAAGGAATTTGAATTGTAA+TGG | - | chr2_1:66897374-66897393 | None:intergenic | 20.0% |
| !! | TCTCCTTTATAATTTGAAAA+TGG | + | chr2_1:66897428-66897447 | Msa0219340:intron | 20.0% |
| !! | CTCCTTTATAATTTGAAAAT+GGG | + | chr2_1:66897429-66897448 | Msa0219340:intron | 20.0% |
| !!! | TTCCCATTTTCAAATTATAA+AGG | - | chr2_1:66897434-66897453 | None:intergenic | 20.0% |
| !! | TATTTATGAAATGACATTGT+TGG | + | chr2_1:66897607-66897626 | Msa0219340:intron | 20.0% |
| !! | ATTTATGAAATGACATTGTT+GGG | + | chr2_1:66897608-66897627 | Msa0219340:intron | 20.0% |
| !!! | TAACAAAATTTTCATCTAAC+AGG | + | chr2_1:66897825-66897844 | Msa0219340:intron | 20.0% |
| !!! | AACAAAATTTTCATCTAACA+GGG | + | chr2_1:66897826-66897845 | Msa0219340:intron | 20.0% |
| ! | CAACAACAAAATTTGATGAA+AGG | + | chr2_1:66893664-66893683 | Msa0219340:CDS | 25.0% |
| !! | AGAAATTAACTTGACACATA+AGG | - | chr2_1:66893705-66893724 | None:intergenic | 25.0% |
| ! | GTGTCAAGTTAATTTCTTTA+TGG | + | chr2_1:66893708-66893727 | Msa0219340:intron | 25.0% |
| ! | TAGAAAAAAAATTACACACG+TGG | + | chr2_1:66894311-66894330 | Msa0219340:intron | 25.0% |
| !!! | CATATTTTAACCCTTTAAAG+AGG | + | chr2_1:66894636-66894655 | Msa0219340:intron | 25.0% |
| !!! | CCCAAATATCTATTTTAACA+AGG | + | chr2_1:66894707-66894726 | Msa0219340:intron | 25.0% |
| !!! | ATATCTATTTTAACAAGGTG+AGG | + | chr2_1:66894712-66894731 | Msa0219340:intron | 25.0% |
| !!! | TATCTATTTTAACAAGGTGA+GGG | + | chr2_1:66894713-66894732 | Msa0219340:intron | 25.0% |
| !! | TATGAAGAGTTCAAAAGTAT+AGG | + | chr2_1:66894741-66894760 | Msa0219340:intron | 25.0% |
| !! | ATGAAGAGTTCAAAAGTATA+GGG | + | chr2_1:66894742-66894761 | Msa0219340:intron | 25.0% |
| ! | CACTTTACACATATACATAA+TGG | - | chr2_1:66895000-66895019 | None:intergenic | 25.0% |
| ! | GTAAAGTGTAAGATATTGAA+TGG | + | chr2_1:66895012-66895031 | Msa0219340:intron | 25.0% |
| ! | TGCATTCAACATATTAAAAC+AGG | - | chr2_1:66895094-66895113 | None:intergenic | 25.0% |
| ! | ACTAATGTAAATAGTCTTCA+TGG | + | chr2_1:66895581-66895600 | Msa0219340:intron | 25.0% |
| ! | TTTATTCACAAAATACTTGC+AGG | - | chr2_1:66896001-66896020 | None:intergenic | 25.0% |
| ! | AATCATCTAAGTTGTACTTA+TGG | + | chr2_1:66896039-66896058 | Msa0219340:intron | 25.0% |
| ! | TTAGTAAACACATATGTGTT+TGG | - | chr2_1:66896423-66896442 | None:intergenic | 25.0% |
| ! | ATATGTGTTTACTAAAGCAA+TGG | + | chr2_1:66896428-66896447 | Msa0219340:CDS | 25.0% |
| ! | TATGTGTTTACTAAAGCAAT+GGG | + | chr2_1:66896429-66896448 | Msa0219340:CDS | 25.0% |
| ! | AAGTTGAATGATGACATTTA+TGG | + | chr2_1:66896598-66896617 | Msa0219340:intron | 25.0% |
| !! | TCATTTTACAATTGTTACCT+AGG | + | chr2_1:66896625-66896644 | Msa0219340:intron | 25.0% |
| !!! | TCCTCCATTTTTCTAATATT+TGG | + | chr2_1:66896839-66896858 | Msa0219340:intron | 25.0% |
| ! | TCCAAATATTAGAAAAATGG+AGG | - | chr2_1:66896843-66896862 | None:intergenic | 25.0% |
| ! | TGATATATGATATGATCACT+AGG | - | chr2_1:66897133-66897152 | None:intergenic | 25.0% |
| ! | GATCATATCATATATCATGT+TGG | + | chr2_1:66897136-66897155 | Msa0219340:CDS | 25.0% |
| !!! | CTTGTTTATCAATGGTTTTT+TGG | - | chr2_1:66897224-66897243 | None:intergenic | 25.0% |
| ! | CAAAAAACCATTGATAAACA+AGG | + | chr2_1:66897222-66897241 | Msa0219340:CDS | 25.0% |
| !!! | AATGATTTGGGTTCAAATTT+TGG | + | chr2_1:66897559-66897578 | Msa0219340:intron | 25.0% |
| ! | AATCTAACTCATAAACAACA+AGG | - | chr2_1:66897668-66897687 | None:intergenic | 25.0% |
| !! | CAATTTTGTGCCAATATTTT+CGG | + | chr2_1:66897866-66897885 | Msa0219340:CDS | 25.0% |
| !! | AATTTTGTGCCAATATTTTC+GGG | + | chr2_1:66897867-66897886 | Msa0219340:CDS | 25.0% |
| ! | TTGATCCCAAAATTATTGAT+TGG | + | chr2_1:66898139-66898158 | Msa0219340:CDS | 25.0% |
| !! | TGATCCCAAAATTATTGATT+GGG | + | chr2_1:66898140-66898159 | Msa0219340:CDS | 25.0% |
| !! | TCTTCCCAATCAATAATTTT+GGG | - | chr2_1:66898147-66898166 | None:intergenic | 25.0% |
| !! | ATCTTCCCAATCAATAATTT+TGG | - | chr2_1:66898148-66898167 | None:intergenic | 25.0% |
| TAAATTGCTGAAGGAAAATC+AGG | + | chr2_1:66893503-66893522 | Msa0219340:CDS | 30.0% | |
| AAATTGCTGAAGGAAAATCA+GGG | + | chr2_1:66893504-66893523 | Msa0219340:CDS | 30.0% | |
| TAAAGAAGGCTTGAATTTGA+AGG | + | chr2_1:66893584-66893603 | Msa0219340:CDS | 30.0% | |
| GCATTGGGTATAAATACATT+AGG | + | chr2_1:66893817-66893836 | Msa0219340:CDS | 30.0% | |
| ! | AGTTCGACTTTTAAATGCTT+AGG | + | chr2_1:66893970-66893989 | Msa0219340:intron | 30.0% |
| ACAACTTCTTGAAACATAAG+GGG | - | chr2_1:66894119-66894138 | None:intergenic | 30.0% | |
| CACAACTTCTTGAAACATAA+GGG | - | chr2_1:66894120-66894139 | None:intergenic | 30.0% | |
| TCACAACTTCTTGAAACATA+AGG | - | chr2_1:66894121-66894140 | None:intergenic | 30.0% | |
| ! | GTTTCAAGAAGTTGTGATTT+TGG | + | chr2_1:66894124-66894143 | Msa0219340:intron | 30.0% |
| !! | TGCATTGACTTGGTTAAAAT+TGG | + | chr2_1:66894344-66894363 | Msa0219340:intron | 30.0% |
| TGCAAAAGGGGTAATATTTA+GGG | + | chr2_1:66894382-66894401 | Msa0219340:intron | 30.0% | |
| !! | AGGTTCAACTCTAGAAATTT+TGG | + | chr2_1:66894607-66894626 | Msa0219340:intron | 30.0% |
| ! | TTTAAAATTGTCCTCGCAAA+AGG | - | chr2_1:66894681-66894700 | None:intergenic | 30.0% |
| ! | TGAAGAGTTCAAAAGTATAG+GGG | + | chr2_1:66894743-66894762 | Msa0219340:intron | 30.0% |
| ATATGTTATTGTATGGCAGA+AGG | + | chr2_1:66895409-66895428 | Msa0219340:intron | 30.0% | |
| CATGCATGTTTGAATACAAA+GGG | - | chr2_1:66895482-66895501 | None:intergenic | 30.0% | |
| ACATGCATGTTTGAATACAA+AGG | - | chr2_1:66895483-66895502 | None:intergenic | 30.0% | |
| GCACATCAAAAATTTAGTCT+TGG | - | chr2_1:66895708-66895727 | None:intergenic | 30.0% | |
| GTTAGTGTTACAAATGAACT+TGG | - | chr2_1:66895854-66895873 | None:intergenic | 30.0% | |
| CTCCATCCTATGTAAAAATA+TGG | + | chr2_1:66895932-66895951 | Msa0219340:intron | 30.0% | |
| !! | CACCATATTTTTACATAGGA+TGG | - | chr2_1:66895937-66895956 | None:intergenic | 30.0% |
| !! | AGCACACCATATTTTTACAT+AGG | - | chr2_1:66895941-66895960 | None:intergenic | 30.0% |
| !! | ATTTAGCATAAGGATTGGTT+TGG | - | chr2_1:66895969-66895988 | None:intergenic | 30.0% |
| TATGGAAAAGAAATTAGTGG+AGG | + | chr2_1:66896187-66896206 | Msa0219340:CDS | 30.0% | |
| GGAGAAATTGAATCAATTTC+AGG | + | chr2_1:66896208-66896227 | Msa0219340:CDS | 30.0% | |
| AACTGAACATGATATTGAAG+TGG | + | chr2_1:66896241-66896260 | Msa0219340:CDS | 30.0% | |
| TTAGAGCTACTAAATATGGA+TGG | + | chr2_1:66896397-66896416 | Msa0219340:intron | 30.0% | |
| AATGCTTGTAGAAACTTTCA+AGG | + | chr2_1:66896455-66896474 | Msa0219340:CDS | 30.0% | |
| TCTATAAGTGCTAGTAACAA+TGG | - | chr2_1:66896511-66896530 | None:intergenic | 30.0% | |
| TGAATGATGACATTTATGGT+TGG | + | chr2_1:66896602-66896621 | Msa0219340:intron | 30.0% | |
| TGCAATTATAGTAGCTATGA+TGG | + | chr2_1:66897093-66897112 | Msa0219340:CDS | 30.0% | |
| ATATGATATGATCACTAGGT+TGG | - | chr2_1:66897129-66897148 | None:intergenic | 30.0% | |
| ! | CTAAAAGTACGATACGTAAT+TGG | - | chr2_1:66897178-66897197 | None:intergenic | 30.0% |
| AAACCATTGATAAACAAGGA+TGG | + | chr2_1:66897226-66897245 | Msa0219340:CDS | 30.0% | |
| ! | TTTCCATCCTTGTTTATCAA+TGG | - | chr2_1:66897232-66897251 | None:intergenic | 30.0% |
| ATGATCGAGATTTAAACTTC+TGG | + | chr2_1:66897518-66897537 | Msa0219340:intron | 30.0% | |
| TGATCGAGATTTAAACTTCT+GGG | + | chr2_1:66897519-66897538 | Msa0219340:intron | 30.0% | |
| GGTTGCAAATTAAATATGAG+TGG | + | chr2_1:66897580-66897599 | Msa0219340:intron | 30.0% | |
| ! | ATTTTGTGCCAATATTTTCG+GGG | + | chr2_1:66897868-66897887 | Msa0219340:CDS | 30.0% |
| TATATAGTCCCCGAAAATAT+TGG | - | chr2_1:66897879-66897898 | None:intergenic | 30.0% | |
| ! | GGACTTGTTTAAATTGCTGA+AGG | + | chr2_1:66893494-66893513 | Msa0219340:CDS | 35.0% |
| ATACAGATACGATGTTGCAT+TGG | + | chr2_1:66893801-66893820 | Msa0219340:intron | 35.0% | |
| TACAGATACGATGTTGCATT+GGG | + | chr2_1:66893802-66893821 | Msa0219340:intron | 35.0% | |
| TGAAAATTACTACTCTCCGA+GGG | + | chr2_1:66893929-66893948 | Msa0219340:intron | 35.0% | |
| ACTTGGTCAAAATTGATCTG+AGG | - | chr2_1:66894209-66894228 | None:intergenic | 35.0% | |
| !! | TGACTTGGTTAAAATTGGTC+AGG | + | chr2_1:66894349-66894368 | Msa0219340:intron | 35.0% |
| ! | GACTTGGTTAAAATTGGTCA+GGG | + | chr2_1:66894350-66894369 | Msa0219340:intron | 35.0% |
| ACTTGGTTAAAATTGGTCAG+GGG | + | chr2_1:66894351-66894370 | Msa0219340:intron | 35.0% | |
| CTGCAAAAGGGGTAATATTT+AGG | + | chr2_1:66894381-66894400 | Msa0219340:intron | 35.0% | |
| GCAAAAGGGGTAATATTTAG+GGG | + | chr2_1:66894383-66894402 | Msa0219340:intron | 35.0% | |
| CAAAAGGGGTAATATTTAGG+GGG | + | chr2_1:66894384-66894403 | Msa0219340:intron | 35.0% | |
| !!! | GTTTTAAGACGTTGCGATTT+TGG | - | chr2_1:66894437-66894456 | None:intergenic | 35.0% |
| ATCGCAACGTCTTAAAACAT+AGG | + | chr2_1:66894439-66894458 | Msa0219340:intron | 35.0% | |
| TCGCAACGTCTTAAAACATA+GGG | + | chr2_1:66894440-66894459 | Msa0219340:intron | 35.0% | |
| GTATGTAGAAGAAAAACCAC+AGG | + | chr2_1:66894587-66894606 | Msa0219340:intron | 35.0% | |
| !! | AATTTCTAGAGTTGAACCTG+TGG | - | chr2_1:66894606-66894625 | None:intergenic | 35.0% |
| !! | GTCTCGAATGAAAGTTTTGA+AGG | - | chr2_1:66895198-66895217 | None:intergenic | 35.0% |
| ! | TGTTTTATGTCCATGCAAGT+AGG | + | chr2_1:66895675-66895694 | Msa0219340:intron | 35.0% |
| ! | GTTTTATGTCCATGCAAGTA+GGG | + | chr2_1:66895676-66895695 | Msa0219340:intron | 35.0% |
| ! | TTTTATGTCCATGCAAGTAG+GGG | + | chr2_1:66895677-66895696 | Msa0219340:intron | 35.0% |
| GTAACACTAACAGTTGCTAA+CGG | + | chr2_1:66895863-66895882 | Msa0219340:intron | 35.0% | |
| TAACACTAACAGTTGCTAAC+GGG | + | chr2_1:66895864-66895883 | Msa0219340:intron | 35.0% | |
| ACCAATCCTTATGCTAAATC+CGG | + | chr2_1:66895970-66895989 | Msa0219340:intron | 35.0% | |
| TCCAGGACTTGACATTAATA+TGG | + | chr2_1:66896169-66896188 | Msa0219340:CDS | 35.0% | |
| TCCATATTAATGTCAAGTCC+TGG | - | chr2_1:66896173-66896192 | None:intergenic | 35.0% | |
| TTGAATCAATTTCAGGCACA+TGG | + | chr2_1:66896215-66896234 | Msa0219340:CDS | 35.0% | |
| TAAGTGCTAGTAACAATGGT+GGG | - | chr2_1:66896507-66896526 | None:intergenic | 35.0% | |
| ATAAGTGCTAGTAACAATGG+TGG | - | chr2_1:66896508-66896527 | None:intergenic | 35.0% | |
| AAACGTAATTCAAATCGCCT+AGG | - | chr2_1:66896645-66896664 | None:intergenic | 35.0% | |
| AGGAAAGTTAACAAGCTTCA+TGG | + | chr2_1:66896907-66896926 | Msa0219340:CDS | 35.0% | |
| AAAGTTAACAAGCTTCATGG+CGG | + | chr2_1:66896910-66896929 | Msa0219340:CDS | 35.0% | |
| TTTCATGCATAGACCAAAAC+AGG | - | chr2_1:66896984-66897003 | None:intergenic | 35.0% | |
| CGTAATTGGATTTCTAACAG+AGG | - | chr2_1:66897164-66897183 | None:intergenic | 35.0% | |
| CAAGGATGGAAAATCGATTA+AGG | + | chr2_1:66897240-66897259 | Msa0219340:CDS | 35.0% | |
| GATGGAAAATCGATTAAGGT+TGG | + | chr2_1:66897244-66897263 | Msa0219340:CDS | 35.0% | |
| AGCATATGAACATGTATCTC+CGG | - | chr2_1:66897303-66897322 | None:intergenic | 35.0% | |
| ! | ATGCTACTTGCTTCCTTTAA+AGG | + | chr2_1:66897318-66897337 | Msa0219340:CDS | 35.0% |
| TTTGAAAATGGGAATGTGTG+TGG | + | chr2_1:66897440-66897459 | Msa0219340:intron | 35.0% | |
| TTGAAAATGGGAATGTGTGT+GGG | + | chr2_1:66897441-66897460 | Msa0219340:intron | 35.0% | |
| ATGACATTGTTGGGACTTTA+TGG | + | chr2_1:66897617-66897636 | Msa0219340:intron | 35.0% | |
| ! | TTATGGTTTACCTAGCTCTT+TGG | + | chr2_1:66897634-66897653 | Msa0219340:intron | 35.0% |
| ATAGAACATATGTACCACTG+TGG | + | chr2_1:66897760-66897779 | Msa0219340:intron | 35.0% | |
| GACTATATACTGACCTAAAC+CGG | + | chr2_1:66897890-66897909 | Msa0219340:CDS | 35.0% | |
| !!! | GCATAACTGTACTGATTTTC+CGG | - | chr2_1:66897912-66897931 | None:intergenic | 35.0% |
| GGAAAATCAGTACAGTTATG+CGG | + | chr2_1:66897911-66897930 | Msa0219340:CDS | 35.0% | |
| ATGCCATTGAAGAACAAGTA+AGG | - | chr2_1:66897955-66897974 | None:intergenic | 35.0% | |
| CTATTAGCCGTAAAACAAGA+AGG | + | chr2_1:66898093-66898112 | Msa0219340:CDS | 35.0% | |
| !!! | TTCTGCACCTTCTTGTTTTA+CGG | - | chr2_1:66898103-66898122 | None:intergenic | 35.0% |
| ATGCATACTTGAAGATACCA+GGG | - | chr2_1:66898191-66898210 | None:intergenic | 35.0% | |
| AATGCATACTTGAAGATACC+AGG | - | chr2_1:66898192-66898211 | None:intergenic | 35.0% | |
| ! | TGTCTCTGAAAAGCTGACTT+TGG | + | chr2_1:66893545-66893564 | Msa0219340:CDS | 40.0% |
| ! | CCTTCTTTAGAAATGTCTCC+AGG | - | chr2_1:66893573-66893592 | None:intergenic | 40.0% |
| ! | CCTGGAGACATTTCTAAAGA+AGG | + | chr2_1:66893570-66893589 | Msa0219340:CDS | 40.0% |
| ! | GAAGGAATCCATTCTAGAAG+AGG | + | chr2_1:66893602-66893621 | Msa0219340:CDS | 40.0% |
| ! | GCAAATCTCCTCTTCTAGAA+TGG | - | chr2_1:66893613-66893632 | None:intergenic | 40.0% |
| TATACCAACCTGTTGAAACG+TGG | - | chr2_1:66893897-66893916 | None:intergenic | 40.0% | |
| GTGAAAATTACTACTCTCCG+AGG | + | chr2_1:66893928-66893947 | Msa0219340:intron | 40.0% | |
| TGCAAAAGGGGCAATACTTA+GGG | - | chr2_1:66894179-66894198 | None:intergenic | 40.0% | |
| ! | TATTGCCCCTTTTGCAGTTT+TGG | + | chr2_1:66894183-66894202 | Msa0219340:intron | 40.0% |
| TAACCAAGTCAATGCACAAG+TGG | - | chr2_1:66894340-66894359 | None:intergenic | 40.0% | |
| CTTGGTTAAAATTGGTCAGG+GGG | + | chr2_1:66894352-66894371 | Msa0219340:intron | 40.0% | |
| ! | ATTCATCTTGACCTTTTGCG+AGG | + | chr2_1:66894667-66894686 | Msa0219340:intron | 40.0% |
| GGTAGTATTGCAATGACTCA+AGG | + | chr2_1:66894958-66894977 | Msa0219340:intron | 40.0% | |
| TCACAAAATACTTGCAGGCA+TGG | - | chr2_1:66895996-66896015 | None:intergenic | 40.0% | |
| TGATATTGAAGTGGCCATGA+AGG | + | chr2_1:66896250-66896269 | Msa0219340:CDS | 40.0% | |
| ACTTATAGAGAACCTTTCCC+TGG | + | chr2_1:66896522-66896541 | Msa0219340:CDS | 40.0% | |
| GTAGTCGTTGCATATGGTAA+AGG | + | chr2_1:66896887-66896906 | Msa0219340:CDS | 40.0% | |
| ! | TTAGCAACATAGCTAGCTTC+CGG | + | chr2_1:66897281-66897300 | Msa0219340:CDS | 40.0% |
| ATATGTACCACTGTGGTGTA+GGG | + | chr2_1:66897767-66897786 | Msa0219340:intron | 40.0% | |
| !!! | CTGTACTGATTTTCCGGTTT+AGG | - | chr2_1:66897906-66897925 | None:intergenic | 40.0% |
| AATCAGTACAGTTATGCGGT+TGG | + | chr2_1:66897915-66897934 | Msa0219340:CDS | 40.0% | |
| CATTGAAGAACAAGTAAGGC+AGG | - | chr2_1:66897951-66897970 | None:intergenic | 40.0% | |
| CTGCCTTACTTGTTCTTCAA+TGG | + | chr2_1:66897949-66897968 | Msa0219340:CDS | 40.0% | |
| TTCATGAATATCCACATCCC+TGG | + | chr2_1:66898171-66898190 | Msa0219340:CDS | 40.0% | |
| ! | GAAAAGCTGACTTTGGTACC+TGG | + | chr2_1:66893552-66893571 | Msa0219340:CDS | 45.0% |
| TTGTCCACGTTTCAACAGGT+TGG | + | chr2_1:66893890-66893909 | Msa0219340:intron | 45.0% | |
| TACTCTCCGAGGGTCAAAAT+AGG | + | chr2_1:66893939-66893958 | Msa0219340:intron | 45.0% | |
| !!! | GTCGAACCTATTTTGACCCT+CGG | - | chr2_1:66893948-66893967 | None:intergenic | 45.0% |
| GCAAAAGGGGCAATACTTAG+GGG | - | chr2_1:66894178-66894197 | None:intergenic | 45.0% | |
| CTGCAAAAGGGGCAATACTT+AGG | - | chr2_1:66894180-66894199 | None:intergenic | 45.0% | |
| TGAGGCCAAAACTGCAAAAG+GGG | - | chr2_1:66894191-66894210 | None:intergenic | 45.0% | |
| CTGAGGCCAAAACTGCAAAA+GGG | - | chr2_1:66894192-66894211 | None:intergenic | 45.0% | |
| ! | TCTGAGGCCAAAACTGCAAA+AGG | - | chr2_1:66894193-66894212 | None:intergenic | 45.0% |
| AGGGGGTCAAAACTGCAAAA+GGG | + | chr2_1:66894369-66894388 | Msa0219340:intron | 45.0% | |
| GCCGGATTTAGCATAAGGAT+TGG | - | chr2_1:66895974-66895993 | None:intergenic | 45.0% | |
| AAAATACTTGCAGGCATGGC+CGG | - | chr2_1:66895992-66896011 | None:intergenic | 45.0% | |
| TACCTTGCAGCTTATGTGTG+TGG | + | chr2_1:66896086-66896105 | Msa0219340:intron | 45.0% | |
| TTAGAGGATCCTCATCGCTA+CGG | + | chr2_1:66896128-66896147 | Msa0219340:CDS | 45.0% | |
| ! | GTGTCACTAAATGGAGTTCC+AGG | + | chr2_1:66896152-66896171 | Msa0219340:CDS | 45.0% |
| TTCCATACCCAAGTCCTTCA+TGG | - | chr2_1:66896267-66896286 | None:intergenic | 45.0% | |
| TGAAGGACTTGGGTATGGAA+AGG | + | chr2_1:66896267-66896286 | Msa0219340:CDS | 45.0% | |
| ATAGAGAACCTTTCCCTGGA+TGG | + | chr2_1:66896526-66896545 | Msa0219340:CDS | 45.0% | |
| TAGAGAACCTTTCCCTGGAT+GGG | + | chr2_1:66896527-66896546 | Msa0219340:CDS | 45.0% | |
| TTAAGCCTTCAACCCATCCA+GGG | - | chr2_1:66896542-66896561 | None:intergenic | 45.0% | |
| TGCAACGACTACACTGTCTA+TGG | - | chr2_1:66896879-66896898 | None:intergenic | 45.0% | |
| GACAGTGTAGTCGTTGCATA+TGG | + | chr2_1:66896881-66896900 | Msa0219340:CDS | 45.0% | |
| GGAAACACAACCAAAGAGCT+AGG | - | chr2_1:66897647-66897666 | None:intergenic | 45.0% | |
| CATATGTACCACTGTGGTGT+AGG | + | chr2_1:66897766-66897785 | Msa0219340:intron | 45.0% | |
| CATCTAACAGGGACTAGAAG+TGG | + | chr2_1:66897837-66897856 | Msa0219340:intron | 45.0% | |
| ACTTGAAGATACCAGGGATG+TGG | - | chr2_1:66898185-66898204 | None:intergenic | 45.0% | |
| !! | TAATATAATAAGATATAATT+TGG | - | chr2_1:66896574-66896593 | None:intergenic | 5.0% |
| GTGCTTGTCCACGTTTCAAC+AGG | + | chr2_1:66893886-66893905 | Msa0219340:CDS | 50.0% | |
| AAAGGGGCAATACTTAGGGG+CGG | - | chr2_1:66894175-66894194 | None:intergenic | 50.0% | |
| TGACCAAGTCAAAGCTGACG+TGG | + | chr2_1:66894220-66894239 | Msa0219340:intron | 50.0% | |
| !! | CGTCCACTTGTGCATTGACT+TGG | + | chr2_1:66894334-66894353 | Msa0219340:intron | 50.0% |
| CAGGGGGTCAAAACTGCAAA+AGG | + | chr2_1:66894368-66894387 | Msa0219340:intron | 50.0% | |
| GGGGGTCAAAACTGCAAAAG+GGG | + | chr2_1:66894370-66894389 | Msa0219340:intron | 50.0% | |
| TATGTCCATGCAAGTAGGGG+TGG | + | chr2_1:66895680-66895699 | Msa0219340:intron | 50.0% | |
| GCATGGCCGGATTTAGCATA+AGG | - | chr2_1:66895979-66895998 | None:intergenic | 50.0% | |
| GGGAGGAGGACTCATATTAG+AGG | + | chr2_1:66896112-66896131 | Msa0219340:CDS | 50.0% | |
| ! | CGCTACGGTGTGTCACTAAA+TGG | + | chr2_1:66896143-66896162 | Msa0219340:CDS | 50.0% |
| TGAAGTGGCCATGAAGGACT+TGG | + | chr2_1:66896256-66896275 | Msa0219340:CDS | 50.0% | |
| GAAGTGGCCATGAAGGACTT+GGG | + | chr2_1:66896257-66896276 | Msa0219340:CDS | 50.0% | |
| CTTAAGCCTTCAACCCATCC+AGG | - | chr2_1:66896543-66896562 | None:intergenic | 50.0% | |
| !! | CTGGATGGGTTGAAGGCTTA+AGG | + | chr2_1:66896541-66896560 | Msa0219340:CDS | 50.0% |
| TGAGCAGATACCAGCAGACA+TGG | + | chr2_1:66897063-66897082 | Msa0219340:intron | 50.0% | |
| GCATTTACCACCATGTCTGC+TGG | - | chr2_1:66897076-66897095 | None:intergenic | 50.0% | |
| ! | CCTCCACGTCAGCTTTGACT+TGG | - | chr2_1:66894226-66894245 | None:intergenic | 55.0% |
| CCAAGTCAAAGCTGACGTGG+AGG | + | chr2_1:66894223-66894242 | Msa0219340:intron | 55.0% | |
| TGGATCCACCCCTACTTGCA+TGG | - | chr2_1:66895688-66895707 | None:intergenic | 55.0% | |
| CGCCACACACATAAGCTGCA+AGG | - | chr2_1:66896091-66896110 | None:intergenic | 55.0% | |
| TGCAGCTTATGTGTGTGGCG+AGG | + | chr2_1:66896091-66896110 | Msa0219340:intron | 55.0% | |
| GCAGCTTATGTGTGTGGCGA+GGG | + | chr2_1:66896092-66896111 | Msa0219340:intron | 55.0% | |
| AGTGACACACCGTAGCGATG+AGG | - | chr2_1:66896140-66896159 | None:intergenic | 55.0% | |
| GGCCATGAAGGACTTGGGTA+TGG | + | chr2_1:66896262-66896281 | Msa0219340:CDS | 55.0% | |
| CCTTCAACCCATCCAGGGAA+AGG | - | chr2_1:66896537-66896556 | None:intergenic | 55.0% | |
| !! | CCTTTCCCTGGATGGGTTGA+AGG | + | chr2_1:66896534-66896553 | Msa0219340:CDS | 55.0% |
| ! | TCTCGACGCAGTTTTCGACG+TGG | + | chr2_1:66896934-66896953 | Msa0219340:CDS | 55.0% |
| GCAGATACCAGCAGACATGG+TGG | + | chr2_1:66897066-66897085 | Msa0219340:intron | 55.0% | |
| TGGGAATGTGTGTGGGACTG+TGG | + | chr2_1:66897448-66897467 | Msa0219340:intron | 55.0% | |
| GGGAATGTGTGTGGGACTGT+GGG | + | chr2_1:66897449-66897468 | Msa0219340:intron | 55.0% | |
| GGAATGTGTGTGGGACTGTG+GGG | + | chr2_1:66897450-66897469 | Msa0219340:intron | 55.0% | |
| TGTACCACTGTGGTGTAGGG+AGG | + | chr2_1:66897770-66897789 | Msa0219340:intron | 55.0% | |
| ACTACCTCCCTACACCACAG+TGG | - | chr2_1:66897777-66897796 | None:intergenic | 55.0% | |
| GCTTATGTGTGTGGCGAGGG+AGG | + | chr2_1:66896095-66896114 | Msa0219340:intron | 60.0% | |
| TATGTGTGTGGCGAGGGAGG+AGG | + | chr2_1:66896098-66896117 | Msa0219340:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 66893483 | 66898365 | 66893483 | ID=Msa0219340;Name=Msa0219340 |
| chr2_1 | mRNA | 66893483 | 66898365 | 66893483 | ID=Msa0219340-mRNA-1;Parent=Msa0219340;Name=Msa0219340-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|1|0.87|1|1|1|8|144|431 |
| chr2_1 | exon | 66893483 | 66893685 | 66893483 | ID=Msa0219340-mRNA-1:exon:18895;Parent=Msa0219340-mRNA-1 |
| chr2_1 | exon | 66893807 | 66893907 | 66893807 | ID=Msa0219340-mRNA-1:exon:18896;Parent=Msa0219340-mRNA-1 |
| chr2_1 | exon | 66896096 | 66896288 | 66896096 | ID=Msa0219340-mRNA-1:exon:18897;Parent=Msa0219340-mRNA-1 |
| chr2_1 | exon | 66896401 | 66896562 | 66896401 | ID=Msa0219340-mRNA-1:exon:18898;Parent=Msa0219340-mRNA-1 |
| chr2_1 | exon | 66896874 | 66896955 | 66896874 | ID=Msa0219340-mRNA-1:exon:18899;Parent=Msa0219340-mRNA-1 |
| chr2_1 | exon | 66897070 | 66897339 | 66897070 | ID=Msa0219340-mRNA-1:exon:18900;Parent=Msa0219340-mRNA-1 |
| chr2_1 | exon | 66897847 | 66897974 | 66897847 | ID=Msa0219340-mRNA-1:exon:18901;Parent=Msa0219340-mRNA-1 |
| chr2_1 | exon | 66898065 | 66898365 | 66898065 | ID=Msa0219340-mRNA-1:exon:18902;Parent=Msa0219340-mRNA-1 |
| chr2_1 | CDS | 66893483 | 66893685 | 66893483 | ID=Msa0219340-mRNA-1:cds;Parent=Msa0219340-mRNA-1 |
| chr2_1 | CDS | 66893807 | 66893907 | 66893807 | ID=Msa0219340-mRNA-1:cds;Parent=Msa0219340-mRNA-1 |
| chr2_1 | CDS | 66896096 | 66896288 | 66896096 | ID=Msa0219340-mRNA-1:cds;Parent=Msa0219340-mRNA-1 |
| chr2_1 | CDS | 66896401 | 66896562 | 66896401 | ID=Msa0219340-mRNA-1:cds;Parent=Msa0219340-mRNA-1 |
| chr2_1 | CDS | 66896874 | 66896955 | 66896874 | ID=Msa0219340-mRNA-1:cds;Parent=Msa0219340-mRNA-1 |
| chr2_1 | CDS | 66897070 | 66897339 | 66897070 | ID=Msa0219340-mRNA-1:cds;Parent=Msa0219340-mRNA-1 |
| chr2_1 | CDS | 66897847 | 66897974 | 66897847 | ID=Msa0219340-mRNA-1:cds;Parent=Msa0219340-mRNA-1 |
| chr2_1 | CDS | 66898065 | 66898221 | 66898065 | ID=Msa0219340-mRNA-1:cds;Parent=Msa0219340-mRNA-1 |
| chr2_1 | three_prime_UTR | 66898222 | 66898365 | 66898222 | ID=Msa0219340-mRNA-1:three_prime_utr;Parent=Msa0219340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
