Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297910 | XP_003596781.2 | 95.592 | 431 | 19 | 0 | 2 | 432 | 62 | 492 | 0.0 | 861 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297910 | sp|Q93ZB9|FACR3_ARATH | 59.953 | 427 | 170 | 1 | 2 | 428 | 66 | 491 | 0.0 | 533 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008440 | Msa0297910 | 0.813649 | 2.300218e-51 | -8.615850e-47 |
| Msa0015960 | Msa0297910 | 0.803841 | 2.876088e-49 | -8.615850e-47 |
| Msa0016080 | Msa0297910 | 0.800065 | 1.716575e-48 | -8.615850e-47 |
| Msa0016310 | Msa0297910 | 0.803206 | 3.893960e-49 | -8.615850e-47 |
| Msa0060670 | Msa0297910 | 0.823124 | 1.639968e-53 | -8.615850e-47 |
| Msa0117560 | Msa0297910 | 0.801371 | 9.291264e-49 | -8.615850e-47 |
| Msa0161130 | Msa0297910 | 0.807322 | 5.349766e-50 | -8.615850e-47 |
| Msa0210610 | Msa0297910 | 0.879623 | 1.070985e-69 | -8.615850e-47 |
| Msa0217060 | Msa0297910 | 0.812688 | 3.738916e-51 | -8.615850e-47 |
| Msa0218610 | Msa0297910 | 0.804894 | 1.735381e-49 | -8.615850e-47 |
| Msa0219340 | Msa0297910 | 0.906378 | 1.582421e-80 | -8.615850e-47 |
| Msa0219350 | Msa0297910 | 0.824931 | 6.178041e-54 | -8.615850e-47 |
| Msa0256920 | Msa0297910 | 0.811750 | 5.990135e-51 | -8.615850e-47 |
| Msa0282960 | Msa0297910 | 0.804463 | 2.134804e-49 | -8.615850e-47 |
| Msa0289960 | Msa0297910 | 0.874235 | 7.913390e-68 | -8.615850e-47 |
| Msa0297900 | Msa0297910 | 0.909622 | 4.644104e-82 | -8.615850e-47 |
| Msa0297910 | Msa0343210 | 0.835122 | 2.016932e-56 | -8.615850e-47 |
| Msa0297910 | Msa0477420 | 0.804248 | 2.366325e-49 | -8.615850e-47 |
| Msa0297910 | Msa0661410 | 0.803791 | 2.945416e-49 | -8.615850e-47 |
| Msa0297910 | Msa0661420 | 0.812988 | 3.213741e-51 | -8.615850e-47 |
| Msa0297910 | Msa0748670 | 0.833933 | 4.012081e-56 | -8.615850e-47 |
| Msa0297910 | Msa0810330 | 0.821054 | 4.950872e-53 | -8.615850e-47 |
| Msa0297910 | Msa0827200 | 0.804861 | 1.763170e-49 | -8.615850e-47 |
| Msa0297910 | Msa0907880 | 0.801532 | 8.612426e-49 | -8.615850e-47 |
| Msa0297910 | Msa0931620 | 0.966226 | 1.224878e-125 | -8.615850e-47 |
| Msa0297910 | Msa1012800 | 0.826926 | 2.075087e-54 | -8.615850e-47 |
| Msa0297910 | Msa1054250 | 0.820830 | 5.575371e-53 | -8.615850e-47 |
| Msa0297910 | Msa1094410 | 0.832759 | 7.869020e-56 | -8.615850e-47 |
| Msa0297910 | Msa1131270 | 0.862751 | 4.059359e-64 | -8.615850e-47 |
| Msa0297910 | Msa1202800 | 0.839927 | 1.182479e-57 | -8.615850e-47 |
| Msa0297910 | Msa1203440 | 0.868308 | 7.191765e-66 | -8.615850e-47 |
| Msa0297910 | Msa1238600 | 0.801867 | 7.352475e-49 | -8.615850e-47 |
| Msa0297910 | Msa1255210 | 0.840089 | 1.072705e-57 | -8.615850e-47 |
| Msa0297910 | Msa1255690 | 0.850221 | 1.953368e-60 | -8.615850e-47 |
| Msa0297910 | Msa1295650 | 0.845310 | 4.398304e-59 | -8.615850e-47 |
| Msa0297910 | Msa1386830 | 0.813978 | 1.946763e-51 | -8.615850e-47 |
| Msa0297910 | Msa1416130 | 0.812950 | 3.276114e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297910 | MtrunA17_Chr2g0321181 | 95.592 | 431 | 19 | 0 | 2 | 432 | 62 | 492 | 0.0 | 861 |
| Msa0297910 | MtrunA17_Chr4g0026701 | 70.930 | 430 | 125 | 0 | 2 | 431 | 63 | 492 | 0.0 | 659 |
| Msa0297910 | MtrunA17_Chr2g0321201 | 69.767 | 430 | 129 | 1 | 2 | 431 | 64 | 492 | 0.0 | 642 |
| Msa0297910 | MtrunA17_Chr4g0026691 | 67.442 | 430 | 140 | 0 | 2 | 431 | 62 | 491 | 0.0 | 620 |
| Msa0297910 | MtrunA17_Chr4g0026711 | 45.116 | 430 | 232 | 2 | 6 | 431 | 66 | 495 | 2.30e-134 | 395 |
| Msa0297910 | MtrunA17_Chr4g0026771 | 45.349 | 430 | 231 | 2 | 6 | 431 | 63 | 492 | 3.23e-133 | 392 |
| Msa0297910 | MtrunA17_Chr6g0465391 | 44.573 | 433 | 203 | 6 | 2 | 431 | 62 | 460 | 6.00e-122 | 362 |
| Msa0297910 | MtrunA17_Chr1g0176054 | 38.427 | 445 | 247 | 8 | 2 | 431 | 176 | 608 | 1.56e-97 | 304 |
| Msa0297910 | MtrunA17_Chr5g0419501 | 34.524 | 336 | 163 | 3 | 6 | 338 | 66 | 347 | 7.04e-60 | 199 |
| Msa0297910 | MtrunA17_Chr4g0026891 | 44.382 | 178 | 94 | 3 | 6 | 179 | 63 | 239 | 8.39e-44 | 154 |
| Msa0297910 | MtrunA17_Chr5g0431251 | 49.612 | 129 | 65 | 0 | 121 | 249 | 2 | 130 | 5.17e-42 | 145 |
| Msa0297910 | MtrunA17_Chr4g0026911 | 40.957 | 188 | 103 | 3 | 249 | 431 | 3 | 187 | 1.42e-40 | 143 |
| Msa0297910 | MtrunA17_Chr5g0431281 | 38.710 | 186 | 108 | 3 | 249 | 431 | 28 | 210 | 2.73e-34 | 127 |
| Msa0297910 | MtrunA17_Chr6g0465381 | 45.098 | 153 | 81 | 2 | 183 | 332 | 1 | 153 | 2.20e-31 | 118 |
| Msa0297910 | MtrunA17_Chr5g0419491 | 45.745 | 94 | 51 | 0 | 338 | 431 | 7 | 100 | 1.89e-23 | 94.4 |
| Msa0297910 | MtrunA17_Chr4g0026901 | 63.793 | 58 | 21 | 0 | 167 | 224 | 16 | 73 | 2.30e-22 | 90.5 |
| Msa0297910 | MtrunA17_Chr5g0431271 | 52.239 | 67 | 32 | 0 | 183 | 249 | 1 | 67 | 3.24e-20 | 86.3 |
| Msa0297910 | MtrunA17_Chr5g0431261 | 36.667 | 90 | 57 | 0 | 249 | 338 | 3 | 92 | 2.91e-14 | 68.2 |
| Msa0297910 | MtrunA17_Chr5g0431241 | 50.000 | 64 | 30 | 1 | 6 | 69 | 66 | 127 | 2.06e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297910 | AT4G33790.1 | 59.953 | 427 | 170 | 1 | 2 | 428 | 66 | 491 | 0.0 | 533 |
| Msa0297910 | AT4G33790.2 | 61.214 | 379 | 146 | 1 | 50 | 428 | 1 | 378 | 2.02e-173 | 490 |
| Msa0297910 | AT3G44540.1 | 51.852 | 432 | 206 | 2 | 2 | 431 | 61 | 492 | 3.48e-158 | 456 |
| Msa0297910 | AT5G22500.1 | 51.168 | 428 | 205 | 3 | 6 | 431 | 65 | 490 | 2.53e-157 | 454 |
| Msa0297910 | AT3G44550.1 | 49.654 | 433 | 211 | 4 | 5 | 431 | 64 | 495 | 7.72e-148 | 430 |
| Msa0297910 | AT3G44560.1 | 49.654 | 433 | 211 | 4 | 5 | 431 | 64 | 495 | 9.38e-140 | 409 |
| Msa0297910 | AT3G44550.2 | 50.781 | 384 | 183 | 3 | 53 | 431 | 4 | 386 | 4.05e-135 | 393 |
| Msa0297910 | AT5G22420.4 | 51.507 | 365 | 172 | 4 | 55 | 418 | 6 | 366 | 2.03e-129 | 378 |
| Msa0297910 | AT5G22500.2 | 52.096 | 334 | 157 | 2 | 6 | 338 | 65 | 396 | 2.88e-125 | 369 |
| Msa0297910 | AT5G22420.1 | 49.451 | 364 | 179 | 4 | 56 | 418 | 43 | 402 | 6.27e-122 | 360 |
| Msa0297910 | AT5G22420.3 | 50.852 | 352 | 168 | 4 | 68 | 418 | 3 | 350 | 9.44e-122 | 358 |
| Msa0297910 | AT5G22420.6 | 50.852 | 352 | 168 | 4 | 68 | 418 | 3 | 350 | 9.44e-122 | 358 |
| Msa0297910 | AT3G44560.3 | 49.344 | 381 | 189 | 3 | 5 | 382 | 64 | 443 | 7.29e-120 | 357 |
| Msa0297910 | AT3G44560.2 | 50.000 | 346 | 169 | 3 | 5 | 347 | 64 | 408 | 4.07e-110 | 331 |
| Msa0297910 | AT5G22420.5 | 49.051 | 316 | 156 | 4 | 104 | 418 | 4 | 315 | 8.28e-103 | 308 |
| Msa0297910 | AT5G22420.2 | 49.164 | 299 | 147 | 4 | 121 | 418 | 2 | 296 | 5.36e-98 | 296 |
| Msa0297910 | AT5G22420.7 | 49.164 | 299 | 147 | 4 | 121 | 418 | 2 | 296 | 5.36e-98 | 296 |
| Msa0297910 | AT3G11980.1 | 38.322 | 441 | 254 | 7 | 2 | 431 | 180 | 613 | 7.06e-95 | 298 |
| Msa0297910 | AT3G44540.2 | 52.590 | 251 | 118 | 1 | 2 | 251 | 61 | 311 | 2.46e-91 | 279 |
| Msa0297910 | AT3G44540.3 | 52.590 | 251 | 118 | 1 | 2 | 251 | 61 | 311 | 2.46e-91 | 279 |
| Msa0297910 | AT3G56700.2 | 37.413 | 433 | 238 | 8 | 2 | 427 | 133 | 539 | 1.34e-85 | 272 |
| Msa0297910 | AT3G56700.1 | 35.104 | 433 | 227 | 9 | 2 | 427 | 133 | 518 | 2.14e-73 | 239 |
Find 98 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCCCAATCAATAATTT+TGG | 0.099596 | 2_3:+51744238 | None:intergenic |
| ATGCTACTTGCTTCCTTTAA+AGG | 0.109660 | 2_3:-51745065 | Msa0297910:intron |
| AACTAATTAAGTACCTTTAA+AGG | 0.213810 | 2_3:+51745052 | None:intergenic |
| TTTATTAGAGCTACTAAATA+TGG | 0.217777 | 2_3:-51745990 | Msa0297910:intron |
| GGAGAAATTGAATCAATTTC+AGG | 0.252213 | 2_3:-51746176 | Msa0297910:CDS |
| CGCTACGGTGTGTCACTAAA+TGG | 0.280988 | 2_3:-51746241 | Msa0297910:CDS |
| TCCAGGACTTGACATTAATA+TGG | 0.292005 | 2_3:-51746215 | Msa0297910:CDS |
| TAAATTGCTGAAGGAAAATC+AGG | 0.305746 | 2_3:-51748870 | Msa0297910:CDS |
| CCTTTCCCTGGATGGGTTGA+AGG | 0.316231 | 2_3:-51745849 | Msa0297910:CDS |
| GTGTGTGATATGTAGATAAT+AGG | 0.330986 | 2_3:-51748905 | Msa0297910:intron |
| TTCCATACCCAAGTCCTTCA+TGG | 0.332535 | 2_3:+51746120 | None:intergenic |
| CTAAAAGTACGATACGTAAT+TGG | 0.334933 | 2_3:+51745208 | None:intergenic |
| CAAGGATGGAAAATCGATTA+AGG | 0.341341 | 2_3:-51745143 | Msa0297910:CDS |
| TTGATCCCAAAATTATTGAT+TGG | 0.345050 | 2_3:-51744244 | Msa0297910:CDS |
| AATGCTTGTAGAAGCTTTCA+AGG | 0.362448 | 2_3:-51745928 | Msa0297910:CDS |
| CTGGATGGGTTGAAGGCTTA+AGG | 0.363182 | 2_3:-51745842 | Msa0297910:intron |
| CTGCCTTACTTGTTCTTCAA+TGG | 0.371170 | 2_3:-51744434 | Msa0297910:CDS |
| TATATAGTCCCCGAAAATAT+TGG | 0.376701 | 2_3:+51744507 | None:intergenic |
| TTAGTAAACACATATGTGTT+TGG | 0.387989 | 2_3:+51745963 | None:intergenic |
| GACTATATACTGACCTAAAC+CGG | 0.388295 | 2_3:-51744493 | Msa0297910:CDS |
| TAAAGAAGGCTTGAATTTGA+AGG | 0.399264 | 2_3:-51748789 | Msa0297910:CDS |
| GCATTGGGTATAAATACATT+AGG | 0.408311 | 2_3:-51748556 | Msa0297910:CDS |
| TGATCCCAAAATTATTGATT+GGG | 0.408779 | 2_3:-51744243 | Msa0297910:CDS |
| TGCAACGACTACACTGTCTA+TGG | 0.409749 | 2_3:+51745507 | None:intergenic |
| GTGCTTGTCCACGTTTCAAC+AGG | 0.413950 | 2_3:-51748487 | Msa0297910:intron |
| GTGTCACTAAATGGAGTTCC+AGG | 0.414231 | 2_3:-51746232 | Msa0297910:CDS |
| CTTAAGCCTTCAACCCATCC+AGG | 0.415537 | 2_3:+51745843 | None:intergenic |
| TTTCCATCCTTGTTTATCAA+TGG | 0.421890 | 2_3:+51745154 | None:intergenic |
| TGCAATTATAGTAGCTATGA+TGG | 0.435605 | 2_3:-51745290 | Msa0297910:CDS |
| TTCAGATACGATGTTGCATT+GGG | 0.438035 | 2_3:-51748571 | Msa0297910:intron |
| GCAAATCTCCTCTTCTAGAA+TGG | 0.446223 | 2_3:+51748763 | None:intergenic |
| TGTCTCTGAAAAGCTGACTT+TGG | 0.449863 | 2_3:-51748828 | Msa0297910:CDS |
| ATTCAGATACGATGTTGCAT+TGG | 0.456501 | 2_3:-51748572 | Msa0297910:intron |
| TGAAGTGGCCATGAAGGACT+TGG | 0.457057 | 2_3:-51746128 | Msa0297910:CDS |
| TCCATATTAATGTCAAGTCC+TGG | 0.464243 | 2_3:+51746214 | None:intergenic |
| CCTGGAGACATTTCTAAAGA+AGG | 0.474431 | 2_3:-51748803 | Msa0297910:CDS |
| GGGAGGAGGACTCATATTAG+AGG | 0.478325 | 2_3:-51746272 | Msa0297910:CDS |
| TAGAGAACCTTTCCCTGGAT+GGG | 0.479839 | 2_3:-51745856 | Msa0297910:CDS |
| GACAGTGTAGTCGTTGCATA+TGG | 0.482402 | 2_3:-51745502 | Msa0297910:CDS |
| TTAGCAACATAGCTAGCTTC+CGG | 0.485475 | 2_3:-51745102 | Msa0297910:CDS |
| GCATTTACCACCATGTCTGC+TGG | 0.493984 | 2_3:+51745310 | None:intergenic |
| AGGAAAGTTAACAAGCTTCA+TGG | 0.499436 | 2_3:-51745476 | Msa0297910:CDS |
| TAATATGGAAAAGAAATTAG+TGG | 0.500685 | 2_3:-51746200 | Msa0297910:CDS |
| ATATGATATGATCACTAGGT+TGG | 0.502614 | 2_3:+51745257 | None:intergenic |
| AGCATATGAACATGTATCTC+CGG | 0.504087 | 2_3:+51745083 | None:intergenic |
| CCTTCTTTAGAAATGTCTCC+AGG | 0.506599 | 2_3:+51748803 | None:intergenic |
| GGCCATGAAGGACTTGGGTA+TGG | 0.510522 | 2_3:-51746122 | Msa0297910:CDS |
| ATAGAGAACCTTTCCCTGGA+TGG | 0.514953 | 2_3:-51745857 | Msa0297910:CDS |
| TATGTGTTTACTAAAGCAAT+GGG | 0.517278 | 2_3:-51745954 | Msa0297910:CDS |
| ACTTATAGAGAACCTTTCCC+TGG | 0.521820 | 2_3:-51745861 | Msa0297910:CDS |
| TGTGTGATATGTAGATAATA+GGG | 0.522338 | 2_3:-51748904 | Msa0297910:intron |
| GGACTTGTTTAAATTGCTGA+AGG | 0.524442 | 2_3:-51748879 | Msa0297910:CDS |
| ATGCCATTGAAGAACAAGTA+AGG | 0.526421 | 2_3:+51744431 | None:intergenic |
| AATGCATACTTGAAGATACC+AGG | 0.527697 | 2_3:+51744194 | None:intergenic |
| GATGGAAAATCGATTAAGGT+TGG | 0.528376 | 2_3:-51745139 | Msa0297910:CDS |
| TTGAATCAATTTCAGGCACA+TGG | 0.537509 | 2_3:-51746169 | Msa0297910:CDS |
| GTAGTCGTTGCATATGGTAA+AGG | 0.544268 | 2_3:-51745496 | Msa0297910:CDS |
| GAAAAGCTGACTTTGGTACC+TGG | 0.548218 | 2_3:-51748821 | Msa0297910:CDS |
| ACTTGAAGATACCAGGGATG+TGG | 0.554747 | 2_3:+51744201 | None:intergenic |
| TATGTGTGTGGCGAGGGAGG+AGG | 0.556285 | 2_3:-51746286 | Msa0297910:CDS |
| TGATATTGAAGTGGCCATGA+AGG | 0.557614 | 2_3:-51746134 | Msa0297910:CDS |
| GAAGGAATCCATTCTAGAAG+AGG | 0.557792 | 2_3:-51748771 | Msa0297910:CDS |
| CATTGAAGAACAAGTAAGGC+AGG | 0.559598 | 2_3:+51744435 | None:intergenic |
| CCTTCAACCCATCCAGGGAA+AGG | 0.559711 | 2_3:+51745849 | None:intergenic |
| GCAGCTTATGTGTGTGGCGA+GGG | 0.560041 | 2_3:-51746292 | Msa0297910:intron |
| CAACAACAAAATTTGATGAA+AGG | 0.560811 | 2_3:-51748709 | Msa0297910:intron |
| AACTGAACATGATATTGAAG+TGG | 0.563421 | 2_3:-51746143 | Msa0297910:CDS |
| TGAGCAGATACCAGCAGACA+TGG | 0.567707 | 2_3:-51745320 | Msa0297910:intron |
| TTCATGAATATCCACATCCC+TGG | 0.572586 | 2_3:-51744212 | Msa0297910:CDS |
| TCTATAAGTGCTAGTAACAA+TGG | 0.574995 | 2_3:+51745875 | None:intergenic |
| AATCAGTACAGTTATGCGGT+TGG | 0.578216 | 2_3:-51744468 | Msa0297910:CDS |
| AAACCATTGATAAACAAGGA+TGG | 0.580526 | 2_3:-51745157 | Msa0297910:CDS |
| TTAGAGCTACTAAATATGGA+TGG | 0.583899 | 2_3:-51745986 | Msa0297910:intron |
| ATATGTGTTTACTAAAGCAA+TGG | 0.585671 | 2_3:-51745955 | Msa0297910:CDS |
| TTTCATCTAACAGGGACTAG+AGG | 0.593969 | 2_3:-51744549 | Msa0297910:intron |
| TGCAGCTTATGTGTGTGGCG+AGG | 0.595421 | 2_3:-51746293 | Msa0297910:intron |
| CATCTAACAGGGACTAGAGG+TGG | 0.596877 | 2_3:-51744546 | Msa0297910:intron |
| TTAAGCCTTCAACCCATCCA+GGG | 0.602292 | 2_3:+51745844 | None:intergenic |
| GATCATATCATATATCATGT+TGG | 0.604822 | 2_3:-51745247 | Msa0297910:CDS |
| TGATATATGATATGATCACT+AGG | 0.608722 | 2_3:+51745253 | None:intergenic |
| TTAGAGGATCCTCATCGCTA+CGG | 0.609694 | 2_3:-51746256 | Msa0297910:CDS |
| TACCTTGCAGCTTATGTGTG+TGG | 0.614766 | 2_3:-51746298 | Msa0297910:intron |
| TGAAGGACTTGGGTATGGAA+AGG | 0.621339 | 2_3:-51746117 | Msa0297910:intron |
| GAAGTGGCCATGAAGGACTT+GGG | 0.622183 | 2_3:-51746127 | Msa0297910:CDS |
| TAAGTGCTAGTAACAATGGT+GGG | 0.626774 | 2_3:+51745879 | None:intergenic |
| GCTTATGTGTGTGGCGAGGG+AGG | 0.631650 | 2_3:-51746289 | Msa0297910:CDS |
| TATACCAACCTGTTGAAACG+TGG | 0.633034 | 2_3:+51748479 | None:intergenic |
| ATGCATACTTGAAGATACCA+GGG | 0.639179 | 2_3:+51744195 | None:intergenic |
| CTATTAGCCGTAAAACAAGA+AGG | 0.639438 | 2_3:-51744290 | Msa0297910:CDS |
| TATGGAAAAGAAATTAGTGG+AGG | 0.640125 | 2_3:-51746197 | Msa0297910:CDS |
| TGATATGTAGATAATAGGGA+AGG | 0.651637 | 2_3:-51748900 | Msa0297910:intron |
| ATAAGTGCTAGTAACAATGG+TGG | 0.663958 | 2_3:+51745878 | None:intergenic |
| AAATTGCTGAAGGAAAATCA+GGG | 0.670151 | 2_3:-51748869 | Msa0297910:CDS |
| CGTAATTGGATTTCTAACAG+AGG | 0.693256 | 2_3:+51745222 | None:intergenic |
| AGTGACACACCGTAGCGATG+AGG | 0.698254 | 2_3:+51746247 | None:intergenic |
| GGAAAATCAGTACAGTTATG+CGG | 0.717584 | 2_3:-51744472 | Msa0297910:CDS |
| GCAGATACCAGCAGACATGG+TGG | 0.717961 | 2_3:-51745317 | Msa0297910:intron |
| AAAGTTAACAAGCTTCATGG+CGG | 0.733783 | 2_3:-51745473 | Msa0297910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACATTAGAATAATTAAA+AGG | - | chr2_3:51744656-51744675 | Msa0297910:intron | 10.0% |
| !! | TCAAAAAAAAAATTTCTTTA+TGG | - | chr2_3:51745113-51745132 | Msa0297910:CDS | 10.0% |
| !! | TATAGTTAATAATAGTATAT+TGG | - | chr2_3:51745449-51745468 | Msa0297910:intron | 10.0% |
| !!! | TTTTGTATTTTATTTTGTTA+GGG | + | chr2_3:51745776-51745795 | None:intergenic | 10.0% |
| !!! | TTTTGTATTTTATTTTGTTA+GGG | - | chr2_3:51745776-51745795 | Msa0297910:intron | 10.0% |
| !! | TTAGTAAATGTAAATATATT+AGG | + | chr2_3:51745851-51745870 | None:intergenic | 10.0% |
| !! | TGTAAACTAATAAATTTAAA+TGG | - | chr2_3:51745908-51745927 | Msa0297910:CDS | 10.0% |
| !!! | AATATGTTCATTATTTTTTT+AGG | - | chr2_3:51746736-51746755 | Msa0297910:intron | 10.0% |
| !!! | ATATGTTCATTATTTTTTTA+GGG | - | chr2_3:51746737-51746756 | Msa0297910:intron | 10.0% |
| !!! | TATAATTTTTCTCTAATTTT+AGG | - | chr2_3:51748137-51748156 | Msa0297910:intron | 10.0% |
| !!! | GTTTTTTTTTGAAATATTTA+AGG | + | chr2_3:51748573-51748592 | None:intergenic | 10.0% |
| !!! | AAATATTATAATAAAGCATT+TGG | - | chr2_3:51749369-51749388 | Msa0297910:intron | 10.0% |
| !!! | TTTGTATTTTATTTTGTTAG+GGG | + | chr2_3:51745777-51745796 | None:intergenic | 15.0% |
| !!! | GTTTTGTATTTTATTTTGTT+AGG | + | chr2_3:51745775-51745794 | None:intergenic | 15.0% |
| !! | AATTAAAAAAAATACACATG+TGG | + | chr2_3:51745622-51745641 | None:intergenic | 15.0% |
| !!! | GTTTTGTATTTTATTTTGTT+AGG | - | chr2_3:51745775-51745794 | Msa0297910:intron | 15.0% |
| !!! | TTTGTATTTTATTTTGTTAG+GGG | - | chr2_3:51745777-51745796 | Msa0297910:intron | 15.0% |
| !!! | CAAATTAGAGAAATTATTTT+CGG | - | chr2_3:51746174-51746193 | Msa0297910:CDS | 15.0% |
| !! | AAAAATGATTGATGAAATTT+AGG | - | chr2_3:51746415-51746434 | Msa0297910:intron | 15.0% |
| !!! | TTACTTTTTTTTTCTTTTGA+AGG | + | chr2_3:51746653-51746672 | None:intergenic | 15.0% |
| !!! | TATGTTCATTATTTTTTTAG+GGG | - | chr2_3:51746738-51746757 | Msa0297910:intron | 15.0% |
| !! | TATGTTTATATGTTATTGTA+TGG | - | chr2_3:51746765-51746784 | Msa0297910:intron | 15.0% |
| !! | TCGATTTAAAAAAATATAAG+TGG | + | chr2_3:51746920-51746939 | None:intergenic | 15.0% |
| !! | AGCATATATATTTCTTAAAA+AGG | - | chr2_3:51747011-51747030 | Msa0297910:intron | 15.0% |
| !! | ATTATTGAACTAATATTTCT+TGG | - | chr2_3:51748053-51748072 | Msa0297910:intron | 15.0% |
| !! | AACAGGAAAAAAAAATTATT+TGG | + | chr2_3:51748330-51748349 | None:intergenic | 15.0% |
| !!! | ATAATTTTTTTTTCCTGTTT+TGG | - | chr2_3:51748331-51748350 | Msa0297910:intron | 15.0% |
| !! | TGATAGTACAATATTAATAT+TGG | - | chr2_3:51748393-51748412 | Msa0297910:intron | 15.0% |
| !!! | AAATCAAAATCTTTTACAAA+AGG | + | chr2_3:51748754-51748773 | None:intergenic | 15.0% |
| !!! | TTTTGTAAAAGATTTTGATT+TGG | - | chr2_3:51748753-51748772 | Msa0297910:CDS | 15.0% |
| !! | AATTTCTATATATTTCTCTT+TGG | - | chr2_3:51749064-51749083 | Msa0297910:intron | 15.0% |
| !!! | TTTAATTAATGCATCTTTTT+TGG | + | chr2_3:51749593-51749612 | None:intergenic | 15.0% |
| !!! | ATTTCTTCCTTTATTTCAAA+TGG | - | chr2_3:51744139-51744158 | Msa0297910:three_prime_UTR | 20.0% |
| !! | TATTAGAACAAATATAAGCA+TGG | - | chr2_3:51744436-51744455 | Msa0297910:CDS | 20.0% |
| !!! | CTTTAGTTGAATACATTTTT+TGG | + | chr2_3:51745239-51745258 | None:intergenic | 20.0% |
| !! | CAAAAAATGTATTCAACTAA+AGG | - | chr2_3:51745237-51745256 | Msa0297910:CDS | 20.0% |
| !!! | TTGTATTTTATTTTGTTAGG+GGG | + | chr2_3:51745778-51745797 | None:intergenic | 20.0% |
| !! | TTGTTAAAATAGATATTTGG+GGG | + | chr2_3:51746069-51746088 | None:intergenic | 20.0% |
| !! | CTTGTTAAAATAGATATTTG+GGG | + | chr2_3:51746070-51746089 | None:intergenic | 20.0% |
| !! | CCTTGTTAAAATAGATATTT+GGG | + | chr2_3:51746071-51746090 | None:intergenic | 20.0% |
| !! | ACCTTGTTAAAATAGATATT+TGG | + | chr2_3:51746072-51746091 | None:intergenic | 20.0% |
| !! | TATTCACTTACAGTTAAATT+GGG | + | chr2_3:51746206-51746225 | None:intergenic | 20.0% |
| !! | TTATTCACTTACAGTTAAAT+TGG | + | chr2_3:51746207-51746226 | None:intergenic | 20.0% |
| !! | ATTAGGAAGACATTATTAAA+TGG | + | chr2_3:51746280-51746299 | None:intergenic | 20.0% |
| !! | TAATAATTGATGAGTGTATT+AGG | + | chr2_3:51746297-51746316 | None:intergenic | 20.0% |
| !! | ATACACTCATCAATTATTAT+CGG | - | chr2_3:51746298-51746317 | Msa0297910:intron | 20.0% |
| !!! | ATTTTAAACTTCTTAACAAG+AGG | - | chr2_3:51746501-51746520 | Msa0297910:intron | 20.0% |
| !!! | TTTTAAACTTCTTAACAAGA+GGG | - | chr2_3:51746502-51746521 | Msa0297910:intron | 20.0% |
| !!! | ATTTGACTTTATTATATGGA+TGG | + | chr2_3:51746806-51746825 | None:intergenic | 20.0% |
| !!! | GAAGATTTGACTTTATTATA+TGG | + | chr2_3:51746810-51746829 | None:intergenic | 20.0% |
| !!! | ACATAATCACTAGTTTTATT+AGG | + | chr2_3:51747119-51747138 | None:intergenic | 20.0% |
| !!! | ACTACTGAAACTATTATTTT+AGG | + | chr2_3:51747151-51747170 | None:intergenic | 20.0% |
| !! | TAATATGGAAAAGAAATTAG+TGG | - | chr2_3:51747546-51747565 | Msa0297910:intron | 20.0% |
| !! | TTTATTAGAGCTACTAAATA+TGG | - | chr2_3:51747756-51747775 | Msa0297910:intron | 20.0% |
| !! | TTATCTAACGTAATTAAAGA+TGG | - | chr2_3:51748113-51748132 | Msa0297910:intron | 20.0% |
| !! | AACTCCAAATATTAGAAAAA+TGG | + | chr2_3:51748209-51748228 | None:intergenic | 20.0% |
| !! | AATATTGTACTATCAATTTG+TGG | + | chr2_3:51748388-51748407 | None:intergenic | 20.0% |
| !! | AAAAAAACCATTGATAAACA+AGG | - | chr2_3:51748585-51748604 | Msa0297910:intron | 20.0% |
| !! | AACTAATTAAGTACCTTTAA+AGG | + | chr2_3:51748697-51748716 | None:intergenic | 20.0% |
| !! | AAAAGGAATTTGAATTGTAA+TGG | + | chr2_3:51748737-51748756 | None:intergenic | 20.0% |
| !! | TCTCCTTTATAATTTGAAAA+TGG | - | chr2_3:51748791-51748810 | Msa0297910:CDS | 20.0% |
| !! | CTCCTTTATAATTTGAAAAT+GGG | - | chr2_3:51748792-51748811 | Msa0297910:CDS | 20.0% |
| !!! | TTCCCATTTTCAAATTATAA+AGG | + | chr2_3:51748797-51748816 | None:intergenic | 20.0% |
| !! | TATTTATGAAATGACATTGT+TGG | - | chr2_3:51748970-51748989 | Msa0297910:intron | 20.0% |
| !! | ATTTATGAAATGACATTGTT+GGG | - | chr2_3:51748971-51748990 | Msa0297910:intron | 20.0% |
| !!! | TAACAAAATTTTCATCTAAC+AGG | - | chr2_3:51749188-51749207 | Msa0297910:intron | 20.0% |
| !!! | AACAAAATTTTCATCTAACA+GGG | - | chr2_3:51749189-51749208 | Msa0297910:intron | 20.0% |
| ! | AATTATGATTAATGCCTTGA+TGG | + | chr2_3:51744060-51744079 | None:intergenic | 25.0% |
| !! | TCCTTTATTTCAAATGGAAT+TGG | - | chr2_3:51744145-51744164 | Msa0297910:three_prime_UTR | 25.0% |
| !! | CCTTTATTTCAAATGGAATT+GGG | - | chr2_3:51744146-51744165 | Msa0297910:three_prime_UTR | 25.0% |
| ! | AGATAAAGTTTCTTCACATT+TGG | + | chr2_3:51744345-51744364 | None:intergenic | 25.0% |
| ! | GAAAATGAGACTTATATTCA+GGG | + | chr2_3:51744729-51744748 | None:intergenic | 25.0% |
| ! | TGTGTGATATGTAGATAATA+GGG | - | chr2_3:51744842-51744861 | Msa0297910:intron | 25.0% |
| ! | CAACAACAAAATTTGATGAA+AGG | - | chr2_3:51745037-51745056 | Msa0297910:intron | 25.0% |
| !! | AGAAATTAACTTGACACATA+AGG | + | chr2_3:51745078-51745097 | None:intergenic | 25.0% |
| ! | GTGTCAAGTTAATTTCTTTA+TGG | - | chr2_3:51745081-51745100 | Msa0297910:CDS | 25.0% |
| !! | AGTTAGACTTTTAAATGCTT+AGG | - | chr2_3:51745343-51745362 | Msa0297910:intron | 25.0% |
| ! | TAGAAAAAAAATTACACACG+TGG | - | chr2_3:51745683-51745702 | Msa0297910:intron | 25.0% |
| !!! | CATATTTTAACCCTTTAAAG+AGG | - | chr2_3:51745997-51746016 | Msa0297910:intron | 25.0% |
| ! | CTGAAAATTACCTCTTTAAA+GGG | + | chr2_3:51746010-51746029 | None:intergenic | 25.0% |
| ! | ACTGAAAATTACCTCTTTAA+AGG | + | chr2_3:51746011-51746030 | None:intergenic | 25.0% |
| !!! | CCCAAATATCTATTTTAACA+AGG | - | chr2_3:51746068-51746087 | Msa0297910:intron | 25.0% |
| !!! | ATATCTATTTTAACAAGGTG+AGG | - | chr2_3:51746073-51746092 | Msa0297910:intron | 25.0% |
| !!! | TATCTATTTTAACAAGGTGA+GGG | - | chr2_3:51746074-51746093 | Msa0297910:intron | 25.0% |
| !! | TATGAAGAGTTCAAAAGTAT+AGG | - | chr2_3:51746102-51746121 | Msa0297910:intron | 25.0% |
| !! | ATGAAGAGTTCAAAAGTATA+GGG | - | chr2_3:51746103-51746122 | Msa0297910:intron | 25.0% |
| ! | CACTTTACACATATACATAA+TGG | + | chr2_3:51746365-51746384 | None:intergenic | 25.0% |
| ! | GTAAAGTGTAAGATATTGAA+TGG | - | chr2_3:51746377-51746396 | Msa0297910:intron | 25.0% |
| ! | GTTAGTGTTACAAATAAACT+TGG | + | chr2_3:51747217-51747236 | None:intergenic | 25.0% |
| ! | TTTATTCACAAAATACTTGC+AGG | + | chr2_3:51747363-51747382 | None:intergenic | 25.0% |
| ! | TATCATCTAAGTTGTACTTA+TGG | - | chr2_3:51747401-51747420 | Msa0297910:intron | 25.0% |
| ! | TTAGTAAACACATATGTGTT+TGG | + | chr2_3:51747786-51747805 | None:intergenic | 25.0% |
| ! | ATATGTGTTTACTAAAGCAA+TGG | - | chr2_3:51747791-51747810 | Msa0297910:intron | 25.0% |
| ! | TATGTGTTTACTAAAGCAAT+GGG | - | chr2_3:51747792-51747811 | Msa0297910:intron | 25.0% |
| ! | AAGTTGAATGATGACATTTA+TGG | - | chr2_3:51747961-51747980 | Msa0297910:intron | 25.0% |
| !! | TCATTTTACAATTGTTACCT+AGG | - | chr2_3:51747988-51748007 | Msa0297910:intron | 25.0% |
| !!! | TCCTCCATTTTTCTAATATT+TGG | - | chr2_3:51748202-51748221 | Msa0297910:intron | 25.0% |
| ! | TCCAAATATTAGAAAAATGG+AGG | + | chr2_3:51748206-51748225 | None:intergenic | 25.0% |
| ! | TGATATATGATATGATCACT+AGG | + | chr2_3:51748496-51748515 | None:intergenic | 25.0% |
| ! | GATCATATCATATATCATGT+TGG | - | chr2_3:51748499-51748518 | Msa0297910:CDS | 25.0% |
| ! | TATTCATGAATTAAATGACC+TGG | - | chr2_3:51748909-51748928 | Msa0297910:intron | 25.0% |
| ! | ATTCATGAATTAAATGACCT+GGG | - | chr2_3:51748910-51748929 | Msa0297910:intron | 25.0% |
| !! | CAATTTTGTGCCAATATTTT+CGG | - | chr2_3:51749229-51749248 | Msa0297910:intron | 25.0% |
| !! | AATTTTGTGCCAATATTTTC+GGG | - | chr2_3:51749230-51749249 | Msa0297910:intron | 25.0% |
| ! | TTGATCCCAAAATTATTGAT+TGG | - | chr2_3:51749502-51749521 | Msa0297910:intron | 25.0% |
| !! | TGATCCCAAAATTATTGATT+GGG | - | chr2_3:51749503-51749522 | Msa0297910:intron | 25.0% |
| !! | TCTTCCCAATCAATAATTTT+GGG | + | chr2_3:51749510-51749529 | None:intergenic | 25.0% |
| !! | ATCTTCCCAATCAATAATTT+TGG | + | chr2_3:51749511-51749530 | None:intergenic | 25.0% |
| TCGCTACAAATGAATGAAAT+GGG | + | chr2_3:51744102-51744121 | None:intergenic | 30.0% | |
| TTCGCTACAAATGAATGAAA+TGG | + | chr2_3:51744103-51744122 | None:intergenic | 30.0% | |
| ! | CCCAATTCCATTTGAAATAA+AGG | + | chr2_3:51744149-51744168 | None:intergenic | 30.0% |
| AAGCATATTGAACTTTCTTG+AGG | - | chr2_3:51744169-51744188 | Msa0297910:exon | 30.0% | |
| AGCATATTGAACTTTCTTGA+GGG | - | chr2_3:51744170-51744189 | Msa0297910:exon | 30.0% | |
| !! | AGATATGTATACTTTTTGCG+AGG | + | chr2_3:51744229-51744248 | None:intergenic | 30.0% |
| !!! | CTTGTTTAGTTTTGCAGTTT+TGG | - | chr2_3:51744296-51744315 | Msa0297910:CDS | 30.0% |
| ! | TTATCTTCTTCTAAGAGCTA+AGG | - | chr2_3:51744359-51744378 | Msa0297910:intron | 30.0% |
| AAATATTCATCACCTCATTG+CGG | + | chr2_3:51744410-51744429 | None:intergenic | 30.0% | |
| AAATATAAGCATGGTCCTAA+GGG | - | chr2_3:51744445-51744464 | Msa0297910:CDS | 30.0% | |
| !! | TTTTAGTGCCACTAAGAAAA+TGG | + | chr2_3:51744499-51744518 | None:intergenic | 30.0% |
| !!! | TTCTAAGATTTTTGATGCTC+TGG | + | chr2_3:51744702-51744721 | None:intergenic | 30.0% |
| AGCATCAAAAATCTTAGAAC+CGG | - | chr2_3:51744703-51744722 | Msa0297910:intron | 30.0% | |
| CGAAAATGAGACTTATATTC+AGG | + | chr2_3:51744730-51744749 | None:intergenic | 30.0% | |
| GTGTGTGATATGTAGATAAT+AGG | - | chr2_3:51744841-51744860 | Msa0297910:intron | 30.0% | |
| TGATATGTAGATAATAGGGA+AGG | - | chr2_3:51744846-51744865 | Msa0297910:intron | 30.0% | |
| TAAATTGCTGAAGGAAAATC+AGG | - | chr2_3:51744876-51744895 | Msa0297910:intron | 30.0% | |
| AAATTGCTGAAGGAAAATCA+GGG | - | chr2_3:51744877-51744896 | Msa0297910:intron | 30.0% | |
| TAAAGAAGGCTTGAATTTGA+AGG | - | chr2_3:51744957-51744976 | Msa0297910:intron | 30.0% | |
| GCATTGGGTATAAATACATT+AGG | - | chr2_3:51745190-51745209 | Msa0297910:CDS | 30.0% | |
| ACAACTTCTTGAAACATAAG+GGG | + | chr2_3:51745492-51745511 | None:intergenic | 30.0% | |
| CACAACTTCTTGAAACATAA+GGG | + | chr2_3:51745493-51745512 | None:intergenic | 30.0% | |
| TCACAACTTCTTGAAACATA+AGG | + | chr2_3:51745494-51745513 | None:intergenic | 30.0% | |
| ! | GTTTCAAGAAGTTGTGATTT+TGG | - | chr2_3:51745497-51745516 | Msa0297910:CDS | 30.0% |
| !! | TGCATTGACTTGGTTAAAAT+TGG | - | chr2_3:51745716-51745735 | Msa0297910:intron | 30.0% |
| TGCAAAAGGGGTAATATTTA+GGG | - | chr2_3:51745748-51745767 | Msa0297910:intron | 30.0% | |
| !! | AGGTTCAACTCTAGAAATTT+TGG | - | chr2_3:51745968-51745987 | Msa0297910:CDS | 30.0% |
| ! | TTTAAAATTGTCCTCGCAAA+AGG | + | chr2_3:51746042-51746061 | None:intergenic | 30.0% |
| ! | TGAAGAGTTCAAAAGTATAG+GGG | - | chr2_3:51746104-51746123 | Msa0297910:intron | 30.0% |
| !! | GTCTCAAATGAAAGTTTTGA+AGG | + | chr2_3:51746563-51746582 | None:intergenic | 30.0% |
| ATATGTTATTGTATGGCAGA+AGG | - | chr2_3:51746772-51746791 | Msa0297910:intron | 30.0% | |
| CATGCATGTTTGAATACAAA+GGG | + | chr2_3:51746845-51746864 | None:intergenic | 30.0% | |
| ACATGCATGTTTGAATACAA+AGG | + | chr2_3:51746846-51746865 | None:intergenic | 30.0% | |
| GCACATCAAAAATTTAGTCT+TGG | + | chr2_3:51747071-51747090 | None:intergenic | 30.0% | |
| GTAACACTAACAATTGCTAA+CGG | - | chr2_3:51747226-51747245 | Msa0297910:intron | 30.0% | |
| TAACACTAACAATTGCTAAC+GGG | - | chr2_3:51747227-51747246 | Msa0297910:intron | 30.0% | |
| CTCCATCCTATGTAAAAATA+TGG | - | chr2_3:51747294-51747313 | Msa0297910:intron | 30.0% | |
| !! | CACCATATTTTTACATAGGA+TGG | + | chr2_3:51747299-51747318 | None:intergenic | 30.0% |
| !! | AGCACACCATATTTTTACAT+AGG | + | chr2_3:51747303-51747322 | None:intergenic | 30.0% |
| !! | ATTTAGCATAAGGATTGGTT+TGG | + | chr2_3:51747331-51747350 | None:intergenic | 30.0% |
| TATGGAAAAGAAATTAGTGG+AGG | - | chr2_3:51747549-51747568 | Msa0297910:intron | 30.0% | |
| GGAGAAATTGAATCAATTTC+AGG | - | chr2_3:51747570-51747589 | Msa0297910:intron | 30.0% | |
| AACTGAACATGATATTGAAG+TGG | - | chr2_3:51747603-51747622 | Msa0297910:intron | 30.0% | |
| TTAGAGCTACTAAATATGGA+TGG | - | chr2_3:51747760-51747779 | Msa0297910:intron | 30.0% | |
| TCTATAAGTGCTAGTAACAA+TGG | + | chr2_3:51747874-51747893 | None:intergenic | 30.0% | |
| TGAATGATGACATTTATGGT+TGG | - | chr2_3:51747965-51747984 | Msa0297910:intron | 30.0% | |
| TGCAATTATAGTAGCTATGA+TGG | - | chr2_3:51748456-51748475 | Msa0297910:intron | 30.0% | |
| ATATGATATGATCACTAGGT+TGG | + | chr2_3:51748492-51748511 | None:intergenic | 30.0% | |
| ! | CTAAAAGTACGATACGTAAT+TGG | + | chr2_3:51748541-51748560 | None:intergenic | 30.0% |
| AAACCATTGATAAACAAGGA+TGG | - | chr2_3:51748589-51748608 | Msa0297910:intron | 30.0% | |
| ! | TTTCCATCCTTGTTTATCAA+TGG | + | chr2_3:51748595-51748614 | None:intergenic | 30.0% |
| ATGATCGAGATTTAAACTTC+TGG | - | chr2_3:51748881-51748900 | Msa0297910:CDS | 30.0% | |
| TGATCGAGATTTAAACTTCT+GGG | - | chr2_3:51748882-51748901 | Msa0297910:CDS | 30.0% | |
| GGTTGCAAATTAAATATGAG+TGG | - | chr2_3:51748943-51748962 | Msa0297910:intron | 30.0% | |
| ATAGAACATATGTATCACTG+TGG | - | chr2_3:51749123-51749142 | Msa0297910:intron | 30.0% | |
| ! | ATTTTGTGCCAATATTTTCG+GGG | - | chr2_3:51749231-51749250 | Msa0297910:intron | 30.0% |
| TATATAGTCCCCGAAAATAT+TGG | + | chr2_3:51749242-51749261 | None:intergenic | 30.0% | |
| ! | GTATTGGTATATCACCATCA+AGG | - | chr2_3:51744043-51744062 | Msa0297910:three_prime_UTR | 35.0% |
| CAAATATAAGCATGGTCCTA+AGG | - | chr2_3:51744444-51744463 | Msa0297910:CDS | 35.0% | |
| ! | GGACTTGTTTAAATTGCTGA+AGG | - | chr2_3:51744867-51744886 | Msa0297910:intron | 35.0% |
| ATTCAGATACGATGTTGCAT+TGG | - | chr2_3:51745174-51745193 | Msa0297910:CDS | 35.0% | |
| TTCAGATACGATGTTGCATT+GGG | - | chr2_3:51745175-51745194 | Msa0297910:CDS | 35.0% | |
| TGAAAATTACTACTCTCCGA+GGG | - | chr2_3:51745302-51745321 | Msa0297910:CDS | 35.0% | |
| ACTTGGTCAAAATTGATCTG+AGG | + | chr2_3:51745582-51745601 | None:intergenic | 35.0% | |
| !! | TGACTTGGTTAAAATTGGTC+AGG | - | chr2_3:51745721-51745740 | Msa0297910:intron | 35.0% |
| ! | GACTTGGTTAAAATTGGTCA+GGG | - | chr2_3:51745722-51745741 | Msa0297910:intron | 35.0% |
| CTGCAAAAGGGGTAATATTT+AGG | - | chr2_3:51745747-51745766 | Msa0297910:intron | 35.0% | |
| GCAAAAGGGGTAATATTTAG+GGG | - | chr2_3:51745749-51745768 | Msa0297910:intron | 35.0% | |
| CAAAAGGGGTAATATTTAGG+GGG | - | chr2_3:51745750-51745769 | Msa0297910:intron | 35.0% | |
| !!! | GTTTTAAGACGTTGCGATTT+TGG | + | chr2_3:51745803-51745822 | None:intergenic | 35.0% |
| ATCGCAACGTCTTAAAACAT+AGG | - | chr2_3:51745805-51745824 | Msa0297910:intron | 35.0% | |
| TCGCAACGTCTTAAAACATA+GGG | - | chr2_3:51745806-51745825 | Msa0297910:intron | 35.0% | |
| GTATGTAGAAGAAAAACCAC+AGG | - | chr2_3:51745948-51745967 | Msa0297910:CDS | 35.0% | |
| !! | AATTTCTAGAGTTGAACCTG+TGG | + | chr2_3:51745967-51745986 | None:intergenic | 35.0% |
| ! | TGTTTTATGTCCATGCAAGT+AGG | - | chr2_3:51747038-51747057 | Msa0297910:intron | 35.0% |
| ! | GTTTTATGTCCATGCAAGTA+GGG | - | chr2_3:51747039-51747058 | Msa0297910:intron | 35.0% |
| ! | TTTTATGTCCATGCAAGTAG+GGG | - | chr2_3:51747040-51747059 | Msa0297910:intron | 35.0% |
| ACCAATCCTTATGCTAAATC+CGG | - | chr2_3:51747332-51747351 | Msa0297910:intron | 35.0% | |
| TCCAGGACTTGACATTAATA+TGG | - | chr2_3:51747531-51747550 | Msa0297910:intron | 35.0% | |
| TCCATATTAATGTCAAGTCC+TGG | + | chr2_3:51747535-51747554 | None:intergenic | 35.0% | |
| TTGAATCAATTTCAGGCACA+TGG | - | chr2_3:51747577-51747596 | Msa0297910:intron | 35.0% | |
| AATGCTTGTAGAAGCTTTCA+AGG | - | chr2_3:51747818-51747837 | Msa0297910:intron | 35.0% | |
| TAAGTGCTAGTAACAATGGT+GGG | + | chr2_3:51747870-51747889 | None:intergenic | 35.0% | |
| ATAAGTGCTAGTAACAATGG+TGG | + | chr2_3:51747871-51747890 | None:intergenic | 35.0% | |
| AAACGTAATTCAAATCGCCT+AGG | + | chr2_3:51748008-51748027 | None:intergenic | 35.0% | |
| AGGAAAGTTAACAAGCTTCA+TGG | - | chr2_3:51748270-51748289 | Msa0297910:intron | 35.0% | |
| AAAGTTAACAAGCTTCATGG+CGG | - | chr2_3:51748273-51748292 | Msa0297910:intron | 35.0% | |
| TTTCATGCATAGACCAAAAC+AGG | + | chr2_3:51748347-51748366 | None:intergenic | 35.0% | |
| CGTAATTGGATTTCTAACAG+AGG | + | chr2_3:51748527-51748546 | None:intergenic | 35.0% | |
| CAAGGATGGAAAATCGATTA+AGG | - | chr2_3:51748603-51748622 | Msa0297910:intron | 35.0% | |
| GATGGAAAATCGATTAAGGT+TGG | - | chr2_3:51748607-51748626 | Msa0297910:intron | 35.0% | |
| AGCATATGAACATGTATCTC+CGG | + | chr2_3:51748666-51748685 | None:intergenic | 35.0% | |
| ! | ATGCTACTTGCTTCCTTTAA+AGG | - | chr2_3:51748681-51748700 | Msa0297910:intron | 35.0% |
| TTTGAAAATGGGAATGTGTG+TGG | - | chr2_3:51748803-51748822 | Msa0297910:CDS | 35.0% | |
| TTGAAAATGGGAATGTGTGT+GGG | - | chr2_3:51748804-51748823 | Msa0297910:CDS | 35.0% | |
| ! | AATGACCTGGGTTCAAATTT+TGG | - | chr2_3:51748922-51748941 | Msa0297910:intron | 35.0% |
| ATGACATTGTTGGGACTTTA+TGG | - | chr2_3:51748980-51748999 | Msa0297910:intron | 35.0% | |
| ! | TTATGGTTTACCTAGCTCTT+TGG | - | chr2_3:51748997-51749016 | Msa0297910:intron | 35.0% |
| ATATGTATCACTGTGGTGTA+GGG | - | chr2_3:51749130-51749149 | Msa0297910:intron | 35.0% | |
| GACTATATACTGACCTAAAC+CGG | - | chr2_3:51749253-51749272 | Msa0297910:intron | 35.0% | |
| !!! | GCATAACTGTACTGATTTTC+CGG | + | chr2_3:51749275-51749294 | None:intergenic | 35.0% |
| GGAAAATCAGTACAGTTATG+CGG | - | chr2_3:51749274-51749293 | Msa0297910:intron | 35.0% | |
| ATGCCATTGAAGAACAAGTA+AGG | + | chr2_3:51749318-51749337 | None:intergenic | 35.0% | |
| CTATTAGCCGTAAAACAAGA+AGG | - | chr2_3:51749456-51749475 | Msa0297910:intron | 35.0% | |
| !!! | TTCTGCACCTTCTTGTTTTA+CGG | + | chr2_3:51749466-51749485 | None:intergenic | 35.0% |
| ATGCATACTTGAAGATACCA+GGG | + | chr2_3:51749554-51749573 | None:intergenic | 35.0% | |
| AATGCATACTTGAAGATACC+AGG | + | chr2_3:51749555-51749574 | None:intergenic | 35.0% | |
| !! | GGCAGAACAATTTTAGTCAC+TGG | - | chr2_3:51744191-51744210 | Msa0297910:CDS | 40.0% |
| ATGAGACTTATATTCAGGGC+CGG | + | chr2_3:51744725-51744744 | None:intergenic | 40.0% | |
| ! | TGTCTCTGAAAAGCTGACTT+TGG | - | chr2_3:51744918-51744937 | Msa0297910:intron | 40.0% |
| ! | CCTTCTTTAGAAATGTCTCC+AGG | + | chr2_3:51744946-51744965 | None:intergenic | 40.0% |
| ! | CCTGGAGACATTTCTAAAGA+AGG | - | chr2_3:51744943-51744962 | Msa0297910:intron | 40.0% |
| ! | GAAGGAATCCATTCTAGAAG+AGG | - | chr2_3:51744975-51744994 | Msa0297910:intron | 40.0% |
| ! | GCAAATCTCCTCTTCTAGAA+TGG | + | chr2_3:51744986-51745005 | None:intergenic | 40.0% |
| TATACCAACCTGTTGAAACG+TGG | + | chr2_3:51745270-51745289 | None:intergenic | 40.0% | |
| GTGAAAATTACTACTCTCCG+AGG | - | chr2_3:51745301-51745320 | Msa0297910:CDS | 40.0% | |
| TGCAAAAGGGGCAATACTTA+GGG | + | chr2_3:51745552-51745571 | None:intergenic | 40.0% | |
| ! | TATTGCCCCTTTTGCAGTTT+TGG | - | chr2_3:51745556-51745575 | Msa0297910:intron | 40.0% |
| TAACCAAGTCAATGCACAAG+TGG | + | chr2_3:51745712-51745731 | None:intergenic | 40.0% | |
| GTATTGCAATGACGTACTCA+AGG | - | chr2_3:51746323-51746342 | Msa0297910:intron | 40.0% | |
| TCACAAAATACTTGCAGGCA+TGG | + | chr2_3:51747358-51747377 | None:intergenic | 40.0% | |
| TGATATTGAAGTGGCCATGA+AGG | - | chr2_3:51747612-51747631 | Msa0297910:intron | 40.0% | |
| ACTTATAGAGAACCTTTCCC+TGG | - | chr2_3:51747885-51747904 | Msa0297910:intron | 40.0% | |
| GTAGTCGTTGCATATGGTAA+AGG | - | chr2_3:51748250-51748269 | Msa0297910:intron | 40.0% | |
| ! | TTAGCAACATAGCTAGCTTC+CGG | - | chr2_3:51748644-51748663 | Msa0297910:intron | 40.0% |
| TGCAACCAAAATTTGAACCC+AGG | + | chr2_3:51748930-51748949 | None:intergenic | 40.0% | |
| CATATGTATCACTGTGGTGT+AGG | - | chr2_3:51749129-51749148 | Msa0297910:intron | 40.0% | |
| TTTCATCTAACAGGGACTAG+AGG | - | chr2_3:51749197-51749216 | Msa0297910:intron | 40.0% | |
| !!! | CTGTACTGATTTTCCGGTTT+AGG | + | chr2_3:51749269-51749288 | None:intergenic | 40.0% |
| AATCAGTACAGTTATGCGGT+TGG | - | chr2_3:51749278-51749297 | Msa0297910:intron | 40.0% | |
| CATTGAAGAACAAGTAAGGC+AGG | + | chr2_3:51749314-51749333 | None:intergenic | 40.0% | |
| CTGCCTTACTTGTTCTTCAA+TGG | - | chr2_3:51749312-51749331 | Msa0297910:intron | 40.0% | |
| TTCATGAATATCCACATCCC+TGG | - | chr2_3:51749534-51749553 | Msa0297910:intron | 40.0% | |
| TGGGCACAATGACAATGTTC+TGG | + | chr2_3:51744083-51744102 | None:intergenic | 45.0% | |
| !!! | ATTTTAGTCACTGGTGCCAC+TGG | - | chr2_3:51744200-51744219 | Msa0297910:CDS | 45.0% |
| TATAAGCATGGTCCTAAGGG+TGG | - | chr2_3:51744448-51744467 | Msa0297910:CDS | 45.0% | |
| ATAAGCATGGTCCTAAGGGT+GGG | - | chr2_3:51744449-51744468 | Msa0297910:CDS | 45.0% | |
| CCACTAAGAAAATGGTGTCC+TGG | + | chr2_3:51744491-51744510 | None:intergenic | 45.0% | |
| ! | CCAGGACACCATTTTCTTAG+TGG | - | chr2_3:51744488-51744507 | Msa0297910:CDS | 45.0% |
| ! | GAAAAGCTGACTTTGGTACC+TGG | - | chr2_3:51744925-51744944 | Msa0297910:intron | 45.0% |
| TTGTCCACGTTTCAACAGGT+TGG | - | chr2_3:51745263-51745282 | Msa0297910:CDS | 45.0% | |
| TACTCTCCGAGGGTCAAAAT+AGG | - | chr2_3:51745312-51745331 | Msa0297910:CDS | 45.0% | |
| !!! | GTCGAACCTATTTTGACCCT+CGG | + | chr2_3:51745321-51745340 | None:intergenic | 45.0% |
| GCAAAAGGGGCAATACTTAG+GGG | + | chr2_3:51745551-51745570 | None:intergenic | 45.0% | |
| CTGCAAAAGGGGCAATACTT+AGG | + | chr2_3:51745553-51745572 | None:intergenic | 45.0% | |
| TGAGGCCAAAACTGCAAAAG+GGG | + | chr2_3:51745564-51745583 | None:intergenic | 45.0% | |
| CTGAGGCCAAAACTGCAAAA+GGG | + | chr2_3:51745565-51745584 | None:intergenic | 45.0% | |
| ! | TCTGAGGCCAAAACTGCAAA+AGG | + | chr2_3:51745566-51745585 | None:intergenic | 45.0% |
| ATTGGTCAGGGAACTGCAAA+AGG | - | chr2_3:51745734-51745753 | Msa0297910:intron | 45.0% | |
| TTGGTCAGGGAACTGCAAAA+GGG | - | chr2_3:51745735-51745754 | Msa0297910:intron | 45.0% | |
| ! | AGTCATCTTGACCTTTTGCG+AGG | - | chr2_3:51746028-51746047 | Msa0297910:intron | 45.0% |
| GCCGGATTTAGCATAAGGAT+TGG | + | chr2_3:51747336-51747355 | None:intergenic | 45.0% | |
| AAAATACTTGCAGGCATGGC+CGG | + | chr2_3:51747354-51747373 | None:intergenic | 45.0% | |
| TACCTTGCAGCTTATGTGTG+TGG | - | chr2_3:51747448-51747467 | Msa0297910:intron | 45.0% | |
| TTAGAGGATCCTCATCGCTA+CGG | - | chr2_3:51747490-51747509 | Msa0297910:intron | 45.0% | |
| ! | GTGTCACTAAATGGAGTTCC+AGG | - | chr2_3:51747514-51747533 | Msa0297910:intron | 45.0% |
| TTCCATACCCAAGTCCTTCA+TGG | + | chr2_3:51747629-51747648 | None:intergenic | 45.0% | |
| TGAAGGACTTGGGTATGGAA+AGG | - | chr2_3:51747629-51747648 | Msa0297910:intron | 45.0% | |
| ATAGAGAACCTTTCCCTGGA+TGG | - | chr2_3:51747889-51747908 | Msa0297910:intron | 45.0% | |
| TAGAGAACCTTTCCCTGGAT+GGG | - | chr2_3:51747890-51747909 | Msa0297910:intron | 45.0% | |
| TTAAGCCTTCAACCCATCCA+GGG | + | chr2_3:51747905-51747924 | None:intergenic | 45.0% | |
| TGCAACGACTACACTGTCTA+TGG | + | chr2_3:51748242-51748261 | None:intergenic | 45.0% | |
| GACAGTGTAGTCGTTGCATA+TGG | - | chr2_3:51748244-51748263 | Msa0297910:intron | 45.0% | |
| GGAAACACAACCAAAGAGCT+AGG | + | chr2_3:51749010-51749029 | None:intergenic | 45.0% | |
| ACTTGAAGATACCAGGGATG+TGG | + | chr2_3:51749548-51749567 | None:intergenic | 45.0% | |
| !! | TAATATAATAAGATATAATT+TGG | + | chr2_3:51747937-51747956 | None:intergenic | 5.0% |
| ! | ACTTTTTGCGAGGAAGCCAG+TGG | + | chr2_3:51744219-51744238 | None:intergenic | 50.0% |
| CACCTCATTGCGGAAACGTT+GGG | + | chr2_3:51744400-51744419 | None:intergenic | 50.0% | |
| TCACCTCATTGCGGAAACGT+TGG | + | chr2_3:51744401-51744420 | None:intergenic | 50.0% | |
| AAAATGGTGTCCTGGACTGC+CGG | + | chr2_3:51744483-51744502 | None:intergenic | 50.0% | |
| GTGCTTGTCCACGTTTCAAC+AGG | - | chr2_3:51745259-51745278 | Msa0297910:CDS | 50.0% | |
| AAAGGGGCAATACTTAGGGG+CGG | + | chr2_3:51745548-51745567 | None:intergenic | 50.0% | |
| TGACCAAGTCAAAGCTGACG+TGG | - | chr2_3:51745593-51745612 | Msa0297910:intron | 50.0% | |
| !! | CGTCCACTTGTGCATTGACT+TGG | - | chr2_3:51745706-51745725 | Msa0297910:intron | 50.0% |
| TGGTCAGGGAACTGCAAAAG+GGG | - | chr2_3:51745736-51745755 | Msa0297910:intron | 50.0% | |
| TATGTCCATGCAAGTAGGGG+TGG | - | chr2_3:51747043-51747062 | Msa0297910:intron | 50.0% | |
| GCATGGCCGGATTTAGCATA+AGG | + | chr2_3:51747341-51747360 | None:intergenic | 50.0% | |
| GGGAGGAGGACTCATATTAG+AGG | - | chr2_3:51747474-51747493 | Msa0297910:intron | 50.0% | |
| ! | CGCTACGGTGTGTCACTAAA+TGG | - | chr2_3:51747505-51747524 | Msa0297910:intron | 50.0% |
| TGAAGTGGCCATGAAGGACT+TGG | - | chr2_3:51747618-51747637 | Msa0297910:intron | 50.0% | |
| GAAGTGGCCATGAAGGACTT+GGG | - | chr2_3:51747619-51747638 | Msa0297910:intron | 50.0% | |
| CTTAAGCCTTCAACCCATCC+AGG | + | chr2_3:51747906-51747925 | None:intergenic | 50.0% | |
| !! | CTGGATGGGTTGAAGGCTTA+AGG | - | chr2_3:51747904-51747923 | Msa0297910:intron | 50.0% |
| TGAGCAGATACCAGCAGACA+TGG | - | chr2_3:51748426-51748445 | Msa0297910:intron | 50.0% | |
| GCATTTACCACCATGTCTGC+TGG | + | chr2_3:51748439-51748458 | None:intergenic | 50.0% | |
| TGTATCACTGTGGTGTAGGG+AGG | - | chr2_3:51749133-51749152 | Msa0297910:intron | 50.0% | |
| CATCTAACAGGGACTAGAGG+TGG | - | chr2_3:51749200-51749219 | Msa0297910:intron | 50.0% | |
| TGCCCAACGTTTCCGCAATG+AGG | - | chr2_3:51744395-51744414 | Msa0297910:intron | 55.0% | |
| ! | CCTCCACGTCAGCTTTGACT+TGG | + | chr2_3:51745599-51745618 | None:intergenic | 55.0% |
| CCAAGTCAAAGCTGACGTGG+AGG | - | chr2_3:51745596-51745615 | Msa0297910:intron | 55.0% | |
| TGGATCCACCCCTACTTGCA+TGG | + | chr2_3:51747051-51747070 | None:intergenic | 55.0% | |
| CGCCACACACATAAGCTGCA+AGG | + | chr2_3:51747453-51747472 | None:intergenic | 55.0% | |
| TGCAGCTTATGTGTGTGGCG+AGG | - | chr2_3:51747453-51747472 | Msa0297910:intron | 55.0% | |
| GCAGCTTATGTGTGTGGCGA+GGG | - | chr2_3:51747454-51747473 | Msa0297910:intron | 55.0% | |
| AGTGACACACCGTAGCGATG+AGG | + | chr2_3:51747502-51747521 | None:intergenic | 55.0% | |
| GGCCATGAAGGACTTGGGTA+TGG | - | chr2_3:51747624-51747643 | Msa0297910:intron | 55.0% | |
| CCTTCAACCCATCCAGGGAA+AGG | + | chr2_3:51747900-51747919 | None:intergenic | 55.0% | |
| !! | CCTTTCCCTGGATGGGTTGA+AGG | - | chr2_3:51747897-51747916 | Msa0297910:intron | 55.0% |
| ! | TCTCGACGCAGTTTTCGACG+TGG | - | chr2_3:51748297-51748316 | Msa0297910:intron | 55.0% |
| GCAGATACCAGCAGACATGG+TGG | - | chr2_3:51748429-51748448 | Msa0297910:intron | 55.0% | |
| TGGGAATGTGTGTGGGACTG+TGG | - | chr2_3:51748811-51748830 | Msa0297910:CDS | 55.0% | |
| GGGAATGTGTGTGGGACTGT+GGG | - | chr2_3:51748812-51748831 | Msa0297910:CDS | 55.0% | |
| GGAATGTGTGTGGGACTGTG+GGG | - | chr2_3:51748813-51748832 | Msa0297910:CDS | 55.0% | |
| AGCATGGTCCTAAGGGTGGG+TGG | - | chr2_3:51744452-51744471 | Msa0297910:CDS | 60.0% | |
| GGTCCTAAGGGTGGGTGGAA+AGG | - | chr2_3:51744457-51744476 | Msa0297910:CDS | 60.0% | |
| CTAAGGGTGGGTGGAAAGGC+CGG | - | chr2_3:51744461-51744480 | Msa0297910:CDS | 60.0% | |
| GCTTATGTGTGTGGCGAGGG+AGG | - | chr2_3:51747457-51747476 | Msa0297910:intron | 60.0% | |
| TATGTGTGTGGCGAGGGAGG+AGG | - | chr2_3:51747460-51747479 | Msa0297910:intron | 60.0% | |
| CGGCCTTTCCACCCACCCTT+AGG | + | chr2_3:51744463-51744482 | None:intergenic | 65.0% | |
| GGTGGAAAGGCCGGCAGTCC+AGG | - | chr2_3:51744470-51744489 | Msa0297910:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 51744040 | 51749728 | 51744040 | ID=Msa0297910;Name=Msa0297910 |
| chr2_3 | mRNA | 51744040 | 51749728 | 51744040 | ID=Msa0297910-mRNA-1;Parent=Msa0297910;Name=Msa0297910-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0.87|0.77|0.88|0.87|0.88|9|144|432 |
| chr2_3 | exon | 51744040 | 51744340 | 51744040 | ID=Msa0297910-mRNA-1:exon:16491;Parent=Msa0297910-mRNA-1 |
| chr2_3 | exon | 51744431 | 51744558 | 51744431 | ID=Msa0297910-mRNA-1:exon:16490;Parent=Msa0297910-mRNA-1 |
| chr2_3 | exon | 51745066 | 51745335 | 51745066 | ID=Msa0297910-mRNA-1:exon:16489;Parent=Msa0297910-mRNA-1 |
| chr2_3 | exon | 51745450 | 51745531 | 51745450 | ID=Msa0297910-mRNA-1:exon:16488;Parent=Msa0297910-mRNA-1 |
| chr2_3 | exon | 51745843 | 51746004 | 51745843 | ID=Msa0297910-mRNA-1:exon:16487;Parent=Msa0297910-mRNA-1 |
| chr2_3 | exon | 51746118 | 51746310 | 51746118 | ID=Msa0297910-mRNA-1:exon:16486;Parent=Msa0297910-mRNA-1 |
| chr2_3 | exon | 51748488 | 51748588 | 51748488 | ID=Msa0297910-mRNA-1:exon:16485;Parent=Msa0297910-mRNA-1 |
| chr2_3 | exon | 51748710 | 51748912 | 51748710 | ID=Msa0297910-mRNA-1:exon:16484;Parent=Msa0297910-mRNA-1 |
| chr2_3 | exon | 51749726 | 51749728 | 51749726 | ID=Msa0297910-mRNA-1:exon:16483;Parent=Msa0297910-mRNA-1 |
| chr2_3 | CDS | 51749726 | 51749728 | 51749726 | ID=Msa0297910-mRNA-1:cds;Parent=Msa0297910-mRNA-1 |
| chr2_3 | CDS | 51748710 | 51748912 | 51748710 | ID=Msa0297910-mRNA-1:cds;Parent=Msa0297910-mRNA-1 |
| chr2_3 | CDS | 51748488 | 51748588 | 51748488 | ID=Msa0297910-mRNA-1:cds;Parent=Msa0297910-mRNA-1 |
| chr2_3 | CDS | 51746118 | 51746310 | 51746118 | ID=Msa0297910-mRNA-1:cds;Parent=Msa0297910-mRNA-1 |
| chr2_3 | CDS | 51745843 | 51746004 | 51745843 | ID=Msa0297910-mRNA-1:cds;Parent=Msa0297910-mRNA-1 |
| chr2_3 | CDS | 51745450 | 51745531 | 51745450 | ID=Msa0297910-mRNA-1:cds;Parent=Msa0297910-mRNA-1 |
| chr2_3 | CDS | 51745066 | 51745335 | 51745066 | ID=Msa0297910-mRNA-1:cds;Parent=Msa0297910-mRNA-1 |
| chr2_3 | CDS | 51744431 | 51744558 | 51744431 | ID=Msa0297910-mRNA-1:cds;Parent=Msa0297910-mRNA-1 |
| chr2_3 | CDS | 51744184 | 51744340 | 51744184 | ID=Msa0297910-mRNA-1:cds;Parent=Msa0297910-mRNA-1 |
| chr2_3 | three_prime_UTR | 51744040 | 51744183 | 51744040 | ID=Msa0297910-mRNA-1:three_prime_utr;Parent=Msa0297910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
