AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1332230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1332230 MtrunA17_Chr4g0060621 99.248 266 1 1 1 265 1 266 0.0 520
Msa1332230 MtrunA17_Chr3g0092521 78.281 221 45 1 1 218 1 221 9.42e-127 360
Msa1332230 MtrunA17_Chr4g0064221 62.868 272 81 5 5 265 105 367 7.19e-107 314
Msa1332230 MtrunA17_Chr6g0487861 48.810 84 42 1 57 139 2 85 4.63e-25 95.1
Msa1332230 MtrunA17_Chr6g0487691 48.810 84 42 1 57 139 2 85 4.63e-25 95.1
Msa1332230 MtrunA17_Chr6g0487501 39.496 119 59 2 100 206 38 155 3.06e-20 84.7
Msa1332230 MtrunA17_Chr2g0299501 27.957 186 103 4 5 160 30 214 1.01e-12 67.4
Msa1332230 MtrunA17_Chr2g0330141 27.568 185 102 4 7 160 30 213 3.50e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1332230 AT1G18800.1 72.851 221 57 3 1 218 1 221 5.40e-112 323
Msa1332230 AT1G74560.1 73.171 205 53 2 17 219 22 226 4.57e-108 313
Msa1332230 AT1G74560.3 73.333 195 50 2 17 209 22 216 3.01e-102 298
Msa1332230 AT2G19480.2 26.380 163 91 3 26 160 55 216 9.78e-11 62.0
Msa1332230 AT2G19480.1 26.380 163 91 3 26 160 55 216 9.93e-11 62.0

Find 99 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGACCATGGCCTTTCTTTC+AGG 0.071837 8_4:+52133075 Msa1332230:three_prime_UTR
TCAAATCTATTCCTGATTTC+TGG 0.142000 8_4:+52129025 Msa1332230:CDS
GGTATATTAGCTTTCTCTTT+TGG 0.151187 8_4:+52133225 Msa1332230:three_prime_UTR
TTCGGTGAGTTTCTGCTTCT+TGG 0.176469 8_4:-52128706 None:intergenic
TTGAGTATGTATTAGGCTTT+TGG 0.206492 8_4:+52133047 Msa1332230:three_prime_UTR
TTGGGTATCTTAGCATAAAA+AGG 0.247822 8_4:+52133295 Msa1332230:three_prime_UTR
ACAGGGTAATTGATAAATTA+TGG 0.281625 8_4:-52133152 None:intergenic
TGCATGATTATAATTTATAT+TGG 0.287040 8_4:+52133410 Msa1332230:three_prime_UTR
AATTAATCAAGGATGATTTA+TGG 0.308424 8_4:+52132138 Msa1332230:CDS
TCTTGAGGTTGAAGATAATA+AGG 0.335371 8_4:+52129620 Msa1332230:CDS
AGCTTTATGCATAACTTTCC+TGG 0.337844 8_4:+52133372 Msa1332230:three_prime_UTR
TGAAAACGCGAAAGGGTGTT+AGG 0.338957 8_4:-52128601 None:intergenic
GATAATAAGGATGTCAAATC+TGG 0.344818 8_4:+52129633 Msa1332230:CDS
TACTGCATTTACTAGCCGTT+TGG 0.353047 8_4:+52133276 Msa1332230:three_prime_UTR
AGTTCAGCATCAACTTCTTC+GGG 0.365326 8_4:-52128732 None:intergenic
CTTCTCATGATTGTCGCCAT+TGG 0.369583 8_4:-52130628 None:intergenic
GAGTTCAGCATCAACTTCTT+CGG 0.373422 8_4:-52128733 None:intergenic
ATGAATGCAGTTTCCTTAGT+TGG 0.378489 8_4:+52131899 Msa1332230:intron
TTCTCATGATTGTCGCCATT+GGG 0.394389 8_4:-52130627 None:intergenic
AGGCAATTGAAAATGCATTA+TGG 0.398971 8_4:+52132998 Msa1332230:exon
TCCGACTATAGTTAACTTGC+GGG 0.399219 8_4:-52133345 None:intergenic
ACTGCATTTACTAGCCGTTT+GGG 0.400007 8_4:+52133277 Msa1332230:three_prime_UTR
TGAATCCTCAAAATAGGGAT+TGG 0.404769 8_4:-52129854 None:intergenic
AGACCATGGCCTTTCTTTCA+GGG 0.412109 8_4:+52133076 Msa1332230:three_prime_UTR
GAATCCTCAAAATAGGGATT+GGG 0.412238 8_4:-52129853 None:intergenic
GTTCTGTCTCCAACCATCTT+CGG 0.412928 8_4:-52128684 None:intergenic
GACACCAACCTGACATCAAC+AGG 0.420723 8_4:-52130669 None:intergenic
TCTCTGTTGTTCCTTCTTCA+CGG 0.428176 8_4:-52129900 None:intergenic
GCATTTATGTTTCAGTTGCC+AGG 0.432385 8_4:-52133390 None:intergenic
ACTAGATGAAATTACTTGAC+AGG 0.444435 8_4:-52133170 None:intergenic
AAGTTGATGAAGAAGAGAAA+AGG 0.450896 8_4:-52128630 None:intergenic
ACAGCATTCAACCAGAAATC+AGG 0.453818 8_4:-52129036 None:intergenic
TCATCGGCATCCTCTTCATC+AGG 0.453926 8_4:-52132316 None:intergenic
ATGGTCGGAGAACCACTAAC+TGG 0.454059 8_4:-52133133 None:intergenic
TCGTTCCGCTTATCGTAAAC+CGG 0.454701 8_4:-52128997 None:intergenic
GAGTTAATGCCCTGAAAGAA+AGG 0.464958 8_4:-52133085 None:intergenic
ATGAGAAGAAAGGGAACAAA+AGG 0.469606 8_4:+52130643 Msa1332230:CDS
AGATGTTGATATTCGCCATC+GGG 0.470851 8_4:+52133454 Msa1332230:three_prime_UTR
CTGTGAGCAGAAAGATGATA+TGG 0.473510 8_4:+52131930 Msa1332230:CDS
AGTTGATGAAGAAGAGAAAA+GGG 0.474749 8_4:-52128629 None:intergenic
GGCGACAATCATGAGAAGAA+AGG 0.484157 8_4:+52130633 Msa1332230:CDS
ATCTAAATTCTAACAGAGGA+TGG 0.486341 8_4:-52133435 None:intergenic
AAAGGCCTCCTGTTGATGTC+AGG 0.487205 8_4:+52130661 Msa1332230:CDS
AGCAGAAGTATAATGAGATT+AGG 0.487313 8_4:+52128971 Msa1332230:CDS
CACAGTCACAAAACCAACTA+AGG 0.487948 8_4:-52131912 None:intergenic
GCAGCTTGCAGAATTAATCA+AGG 0.516175 8_4:+52132127 Msa1332230:intron
GTATAATGAGATTAGGAAGC+CGG 0.518765 8_4:+52128978 Msa1332230:CDS
TGTTGTTCCTTCTTCACGGA+AGG 0.521205 8_4:-52129896 None:intergenic
ACACAGAGGCGAACCGAAGA+TGG 0.523143 8_4:+52128671 Msa1332230:exon
GAGCTACACAAGCCAGTTAG+TGG 0.523204 8_4:+52133121 Msa1332230:three_prime_UTR
TCTAAATTCTAACAGAGGAT+GGG 0.525688 8_4:-52133434 None:intergenic
GCGACAATCATGAGAAGAAA+GGG 0.529007 8_4:+52130634 Msa1332230:CDS
TAATGATGAAGCGAGTGATA+AGG 0.530659 8_4:+52128936 Msa1332230:CDS
TGAAGCTGATGATGAGGTAA+TGG 0.532222 8_4:+52132339 Msa1332230:CDS
GAAAACGCGAAAGGGTGTTA+GGG 0.538787 8_4:-52128600 None:intergenic
GATCCAAGATGACCTCGAAA+AGG 0.540267 8_4:+52128782 Msa1332230:CDS
TATCACTAAAATTGCACGAT+GGG 0.540851 8_4:-52133197 None:intergenic
CTCATTCAGTAGTTCACTGA+GGG 0.542426 8_4:-52129186 None:intergenic
TTCCGACTATAGTTAACTTG+CGG 0.542706 8_4:-52133346 None:intergenic
TGACGAAGAGGGTGATGATG+AGG 0.543527 8_4:+52132974 Msa1332230:CDS
CTCTTCTTCATCAACTTCCG+CGG 0.546448 8_4:+52128636 Msa1332230:five_prime_UTR
CTCATCATCAGCTTCATCAT+CGG 0.555556 8_4:-52132332 None:intergenic
CAAGTATTTGAGTTCTCTTG+AGG 0.559002 8_4:+52129605 Msa1332230:CDS
GATCTCTTGCAATTTCTCGA+TGG 0.566477 8_4:-52128763 None:intergenic
TCCCGCAAGTTAACTATAGT+CGG 0.568159 8_4:+52133344 Msa1332230:three_prime_UTR
GTAGTTCACTGAGGGTAGGA+TGG 0.569898 8_4:-52129178 None:intergenic
CCTCAGTGAACTACTGAATG+AGG 0.570986 8_4:+52129187 Msa1332230:CDS
ACAGGAGGAGCCTGATGAAG+AGG 0.571562 8_4:+52132306 Msa1332230:intron
CTAAATTCTAACAGAGGATG+GGG 0.571769 8_4:-52133433 None:intergenic
GGTGGAATGAAAACGCGAAA+GGG 0.576072 8_4:-52128608 None:intergenic
TAGATGTTGATATTCGCCAT+CGG 0.578538 8_4:+52133453 Msa1332230:three_prime_UTR
AGAGGCGAACCGAAGATGGT+TGG 0.579592 8_4:+52128675 Msa1332230:exon
CATAAAATGGAAAGAAGGCA+AGG 0.587844 8_4:+52129936 Msa1332230:CDS
CAAGTTAACTATAGTCGGAA+AGG 0.588633 8_4:+52133349 Msa1332230:three_prime_UTR
TTTATGCTAAGATACCCAAA+CGG 0.589342 8_4:-52133291 None:intergenic
ATGCCCTGAAAGAAAGGCCA+TGG 0.592269 8_4:-52133079 None:intergenic
TGATGAAGAAGAGAAAAGGG+TGG 0.594767 8_4:-52128626 None:intergenic
CTAGATGAAATTACTTGACA+GGG 0.597629 8_4:-52133169 None:intergenic
CTTGCAATTTCTCGATGGAG+AGG 0.599246 8_4:-52128758 None:intergenic
AGACGAGGACGACTCTGAAG+AGG 0.603159 8_4:+52132950 Msa1332230:CDS
GGGTGGAATGAAAACGCGAA+AGG 0.604662 8_4:-52128609 None:intergenic
GGAAGCCGGTTTACGATAAG+CGG 0.605546 8_4:+52128992 Msa1332230:CDS
CATTAACTCATGTCAGCAAG+TGG 0.610410 8_4:+52133099 Msa1332230:three_prime_UTR
GGTAATTGATAAATTATGGT+CGG 0.611413 8_4:-52133148 None:intergenic
CTCTGAAGAGGATGACGAAG+AGG 0.619244 8_4:+52132962 Msa1332230:CDS
TCTGAAGAGGATGACGAAGA+GGG 0.630726 8_4:+52132963 Msa1332230:CDS
TTCAGTAGTTCACTGAGGGT+AGG 0.637147 8_4:-52129182 None:intergenic
GAAGAGGGTGATGATGAGGA+AGG 0.646490 8_4:+52132978 Msa1332230:CDS
CAACATCTAAATTCTAACAG+AGG 0.650545 8_4:-52133439 None:intergenic
GACTATAGTTAACTTGCGGG+AGG 0.653498 8_4:-52133342 None:intergenic
TACATGTAGGGAATACCCAA+TGG 0.673035 8_4:+52130612 Msa1332230:intron
CGATGATGAAGCTGATGATG+AGG 0.673202 8_4:+52132333 Msa1332230:CDS
ACACTGTTGAAATAAATGAG+TGG 0.676235 8_4:-52132167 None:intergenic
CCTCATTCAGTAGTTCACTG+AGG 0.684849 8_4:-52129187 None:intergenic
ACCAACCTGACATCAACAGG+AGG 0.699036 8_4:-52130666 None:intergenic
GTATCACTAAAATTGCACGA+TGG 0.702616 8_4:-52133198 None:intergenic
GGCAATCTTCACTCACACAG+AGG 0.721891 8_4:+52128657 Msa1332230:five_prime_UTR
TATGGCTGACATTCACGACG+AGG 0.776284 8_4:+52131948 Msa1332230:CDS
TGTGTGAGTGAAGATTGCCG+CGG 0.840253 8_4:-52128653 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATATATGATAGTTTA+AGG + chr8_4:52130411-52130430 Msa1332230:intron 10.0%
!! TTAAATATATGATAGTTTAA+GGG + chr8_4:52130412-52130431 Msa1332230:intron 10.0%
!! AAATGTTAATATAAAGAATA+TGG + chr8_4:52132627-52132646 Msa1332230:intron 10.0%
!!! ATTGTGTTTTAATAATTATG+TGG + chr8_4:52128886-52128905 Msa1332230:intron 15.0%
!! ATATCTATCAAATAAAGAAT+TGG - chr8_4:52129584-52129603 None:intergenic 15.0%
!! AAAAATTATAAATGCTGATA+GGG - chr8_4:52129988-52130007 None:intergenic 15.0%
!! TAAAAATTATAAATGCTGAT+AGG - chr8_4:52129989-52130008 None:intergenic 15.0%
!! TCAACAACAAAAAATATATA+AGG - chr8_4:52130488-52130507 None:intergenic 15.0%
!!! CATTTTGTATAAACATATAA+AGG - chr8_4:52130791-52130810 None:intergenic 15.0%
!!! AAATGTTTTTTTACATGAAA+GGG - chr8_4:52131660-52131679 None:intergenic 15.0%
!!! AAAATGTTTTTTTACATGAA+AGG - chr8_4:52131661-52131680 None:intergenic 15.0%
!!! TTCACATTATTTATTGTTTT+CGG - chr8_4:52132732-52132751 None:intergenic 15.0%
!! TGTTTGTCATTAATTTAAAA+TGG - chr8_4:52132881-52132900 None:intergenic 15.0%
!! TGCATGATTATAATTTATAT+TGG + chr8_4:52133410-52133429 Msa1332230:three_prime_UTR 15.0%
!! GCTTCAATTGAATAAAAAAA+CGG - chr8_4:52128810-52128829 None:intergenic 20.0%
!! AACACAATTCAAATCAAATT+AGG - chr8_4:52128874-52128893 None:intergenic 20.0%
!!! TGAAGTGATTTTCAAATTTT+CGG - chr8_4:52129705-52129724 None:intergenic 20.0%
!! AAAATTATAAATGCTGATAG+GGG - chr8_4:52129987-52130006 None:intergenic 20.0%
!!! ATAAATCATAAGTTTCAAGT+AGG + chr8_4:52130156-52130175 Msa1332230:intron 20.0%
!!! TAAATCATAAGTTTCAAGTA+GGG + chr8_4:52130157-52130176 Msa1332230:intron 20.0%
!! TGATTAGAAATACAATCATT+AGG + chr8_4:52130341-52130360 Msa1332230:intron 20.0%
!!! AATCCTTTTAAAGTAGATTT+AGG - chr8_4:52131063-52131082 None:intergenic 20.0%
!! ATTTGCAAATGAAAATACTT+TGG - chr8_4:52131283-52131302 None:intergenic 20.0%
!! TTTGAGAAATATGTTGTTAA+AGG + chr8_4:52131811-52131830 Msa1332230:intron 20.0%
!! AGTGAATTGAATATTATACA+AGG - chr8_4:52132102-52132121 None:intergenic 20.0%
!! AATTAATCAAGGATGATTTA+TGG + chr8_4:52132138-52132157 Msa1332230:CDS 20.0%
!! AAAATGACAAATAATGCATT+TGG - chr8_4:52132233-52132252 None:intergenic 20.0%
!!! TCTATTTTTTCCAAGAAAAA+CGG - chr8_4:52132370-52132389 None:intergenic 20.0%
!! TATTGCTCATAATAATTGTT+TGG + chr8_4:52132414-52132433 Msa1332230:intron 20.0%
!! TGAAAATTATGAATTCAGTA+TGG - chr8_4:52132459-52132478 None:intergenic 20.0%
!! TTAATCCTAAACATTGTTAA+AGG + chr8_4:52132822-52132841 Msa1332230:intron 20.0%
!! CTCAAACCAAAAAAATAAAA+AGG - chr8_4:52133032-52133051 None:intergenic 20.0%
! ATTATTTGATCCACCAAATT+AGG + chr8_4:52128844-52128863 Msa1332230:intron 25.0%
! CAAATTAGGTTAACCTAATT+TGG - chr8_4:52128858-52128877 None:intergenic 25.0%
!!! TTCTGTGGAAGTATTTTTTA+AGG + chr8_4:52129324-52129343 Msa1332230:intron 25.0%
! CATGAAAGAACATAATAAGT+GGG - chr8_4:52129484-52129503 None:intergenic 25.0%
! ACATGAAAGAACATAATAAG+TGG - chr8_4:52129485-52129504 None:intergenic 25.0%
!! ATTTTCAAATTTTCGGAAGA+GGG - chr8_4:52129698-52129717 None:intergenic 25.0%
! CTTCATTGCAATGAAAAATA+TGG + chr8_4:52129720-52129739 Msa1332230:intron 25.0%
!!! AGTTTTGAATCCTCAAAATA+GGG - chr8_4:52129862-52129881 None:intergenic 25.0%
!!! AAGTTTTGAATCCTCAAAAT+AGG - chr8_4:52129863-52129882 None:intergenic 25.0%
!!! TTAAACTTGCTAAAAGTAGA+GGG + chr8_4:52130071-52130090 Msa1332230:intron 25.0%
! AATCTGTAAATCTCACAATT+TGG - chr8_4:52130448-52130467 None:intergenic 25.0%
! TTGTGAGATTTACAGATTAA+TGG + chr8_4:52130450-52130469 Msa1332230:intron 25.0%
! CTGTCGAAAAAAAAAAAAGA+AGG - chr8_4:52130548-52130567 None:intergenic 25.0%
!!! TCTTTTTTTTTTTTCGACAG+AGG + chr8_4:52130548-52130567 Msa1332230:intron 25.0%
! GTTAGTAAAATACAACAACA+AGG - chr8_4:52130580-52130599 None:intergenic 25.0%
! GTTTATACAAAATGAACTTC+TGG + chr8_4:52130797-52130816 Msa1332230:intron 25.0%
! TTTATTGATGTCCTAATTGA+CGG - chr8_4:52130879-52130898 None:intergenic 25.0%
! TCAATTAGGACATCAATAAA+GGG + chr8_4:52130879-52130898 Msa1332230:intron 25.0%
! AAAAAAGGAAAAGAGGAATT+TGG - chr8_4:52130939-52130958 None:intergenic 25.0%
! ACTGAAAAGAAGAAGAAAAA+AGG - chr8_4:52130954-52130973 None:intergenic 25.0%
! ATGCCTAAATCTACTTTAAA+AGG + chr8_4:52131057-52131076 Msa1332230:intron 25.0%
! ACTTTGGTATTGTTAAATAG+CGG - chr8_4:52131267-52131286 None:intergenic 25.0%
! TTCATTTGCAAATAATTGAC+TGG + chr8_4:52131290-52131309 Msa1332230:intron 25.0%
! ACAATTGATCAAATTTCTCT+TGG - chr8_4:52131398-52131417 None:intergenic 25.0%
! TGATCAATTGTATACTTGAT+TGG + chr8_4:52131407-52131426 Msa1332230:intron 25.0%
!!! TTTTTTACATGAAAGGGTTT+TGG - chr8_4:52131654-52131673 None:intergenic 25.0%
!! GTTTTTCTTGGAAAAAATAG+AGG + chr8_4:52132369-52132388 Msa1332230:CDS 25.0%
!! AGGTGATTAACAAAAGTTTT+TGG + chr8_4:52132389-52132408 Msa1332230:intron 25.0%
!! GGTGATTAACAAAAGTTTTT+GGG + chr8_4:52132390-52132409 Msa1332230:intron 25.0%
! TTCAATTAAAGAGTTTGATG+CGG + chr8_4:52132475-52132494 Msa1332230:intron 25.0%
! AAGAATATGGAACTATAAGT+TGG + chr8_4:52132640-52132659 Msa1332230:intron 25.0%
! TCATTCTAACTTAAAGCTTT+AGG - chr8_4:52132699-52132718 None:intergenic 25.0%
! TAGATCCTTTAACAATGTTT+AGG - chr8_4:52132830-52132849 None:intergenic 25.0%
! AAATAATATTTCTTGTTCGC+AGG + chr8_4:52132923-52132942 Msa1332230:intron 25.0%
!!! GTGTGACCTTTTTATTTTTT+TGG + chr8_4:52133023-52133042 Msa1332230:three_prime_UTR 25.0%
!!! TTTTGGTTTGAGTATGTATT+AGG + chr8_4:52133040-52133059 Msa1332230:three_prime_UTR 25.0%
! GGTAATTGATAAATTATGGT+CGG - chr8_4:52133151-52133170 None:intergenic 25.0%
! ACAGGGTAATTGATAAATTA+TGG - chr8_4:52133155-52133174 None:intergenic 25.0%
!!! GTATATTAGCTTTCTCTTTT+GGG + chr8_4:52133226-52133245 Msa1332230:three_prime_UTR 25.0%
!! AGTTGATGAAGAAGAGAAAA+GGG - chr8_4:52128632-52128651 None:intergenic 30.0%
!! AAGTTGATGAAGAAGAGAAA+AGG - chr8_4:52128633-52128652 None:intergenic 30.0%
ATTAGGTTAACCTAATTTGG+TGG - chr8_4:52128857-52128876 None:intergenic 30.0%
! AGCAGAAGTATAATGAGATT+AGG + chr8_4:52128971-52128990 Msa1332230:CDS 30.0%
TCAAATCTATTCCTGATTTC+TGG + chr8_4:52129025-52129044 Msa1332230:CDS 30.0%
!! TTGGTTTGTTTGTATGATTC+TGG + chr8_4:52129286-52129305 Msa1332230:intron 30.0%
! GTATGATTCTGGAAATTACT+CGG + chr8_4:52129297-52129316 Msa1332230:intron 30.0%
! AAAACGAAACAGAATGGTTT+TGG + chr8_4:52129371-52129390 Msa1332230:intron 30.0%
TACTTTGATTCCATGGAAAA+TGG - chr8_4:52129402-52129421 None:intergenic 30.0%
GTGATATTACTTTGATTCCA+TGG - chr8_4:52129409-52129428 None:intergenic 30.0%
!!! GGTTTTGTTCCTTTGATTAA+CGG + chr8_4:52129532-52129551 Msa1332230:intron 30.0%
TCTTGAGGTTGAAGATAATA+AGG + chr8_4:52129620-52129639 Msa1332230:CDS 30.0%
GATAATAAGGATGTCAAATC+TGG + chr8_4:52129633-52129652 Msa1332230:CDS 30.0%
! TTTTCAAATTTTCGGAAGAG+GGG - chr8_4:52129697-52129716 None:intergenic 30.0%
! GATTTTCAAATTTTCGGAAG+AGG - chr8_4:52129699-52129718 None:intergenic 30.0%
GTCAGTAGAAAATCAACATT+TGG - chr8_4:52129793-52129812 None:intergenic 30.0%
TCTGAACATGAAATGATTAC+TGG - chr8_4:52129825-52129844 None:intergenic 30.0%
! TTGCCTTCTTTCCATTTTAT+GGG - chr8_4:52129937-52129956 None:intergenic 30.0%
GATTTGAAGAAGTTTCACAT+TGG - chr8_4:52130033-52130052 None:intergenic 30.0%
TTCTTCAAATCTACATGACA+TGG + chr8_4:52130042-52130061 Msa1332230:intron 30.0%
!! CTTAAACTTGCTAAAAGTAG+AGG + chr8_4:52130070-52130089 Msa1332230:intron 30.0%
TGAGTGATACTTTACTATTG+CGG - chr8_4:52130209-52130228 None:intergenic 30.0%
AAAGTTACCCCACAATTAAA+AGG + chr8_4:52130240-52130259 Msa1332230:intron 30.0%
!! ATTACAGGCCTTTTAATTGT+GGG - chr8_4:52130251-52130270 None:intergenic 30.0%
ACAGATTCATACAACATTAC+AGG - chr8_4:52130266-52130285 None:intergenic 30.0%
TTGTATGAATCTGTTCACTT+GGG + chr8_4:52130272-52130291 Msa1332230:intron 30.0%
ACATAATCCTGATACATGTA+GGG + chr8_4:52130600-52130619 Msa1332230:intron 30.0%
ACTAATATGCATCATGAACA+TGG - chr8_4:52130748-52130767 None:intergenic 30.0%
! TATTAGTTTCCACTTGTTCT+TGG + chr8_4:52130761-52130780 Msa1332230:intron 30.0%
GTCAATTAGGACATCAATAA+AGG + chr8_4:52130878-52130897 Msa1332230:intron 30.0%
AAACAAGCATCACTAATCAA+GGG - chr8_4:52130905-52130924 None:intergenic 30.0%
AAAACAAGCATCACTAATCA+AGG - chr8_4:52130906-52130925 None:intergenic 30.0%
! TTGATTAGTGATGCTTGTTT+TGG + chr8_4:52130905-52130924 Msa1332230:intron 30.0%
GAAGAAGAAAAAAGGAAAAG+AGG - chr8_4:52130946-52130965 None:intergenic 30.0%
TTTATTCCAATATGACCAAG+CGG + chr8_4:52130978-52130997 Msa1332230:intron 30.0%
CATAACACAATACAATACAG+AGG + chr8_4:52131034-52131053 Msa1332230:intron 30.0%
TATCTCCGTCAATTATTTGA+CGG + chr8_4:52131334-52131353 Msa1332230:intron 30.0%
TCAATTGTATACTTGATTGG+AGG + chr8_4:52131410-52131429 Msa1332230:intron 30.0%
!!! TGGTACCAATTTTTTCCAAT+AGG + chr8_4:52131468-52131487 Msa1332230:intron 30.0%
!! CAAATATGAAGGTGGTTTTA+AGG - chr8_4:52131749-52131768 None:intergenic 30.0%
TAAAACCACCTTCATATTTG+AGG + chr8_4:52131749-52131768 Msa1332230:intron 30.0%
TCATTAGCACAAGAAATCAA+AGG - chr8_4:52131883-52131902 None:intergenic 30.0%
ACACTGTTGAAATAAATGAG+TGG - chr8_4:52132170-52132189 None:intergenic 30.0%
AGCTACAGTTAGAAACATAA+CGG - chr8_4:52132274-52132293 None:intergenic 30.0%
GTAGCTGATTGTAATATAAC+AGG + chr8_4:52132288-52132307 Msa1332230:intron 30.0%
AAAAAGTTATGCATTCAGCA+TGG - chr8_4:52132521-52132540 None:intergenic 30.0%
TGAAAATTAAAGTTCGGTTC+AGG - chr8_4:52132582-52132601 None:intergenic 30.0%
CGCGAATGAAAATTAAAGTT+CGG - chr8_4:52132588-52132607 None:intergenic 30.0%
! TTAATTTTCATTCGCGATCT+AGG + chr8_4:52132592-52132611 Msa1332230:intron 30.0%
TGATAACCTCCAAAAAAACT+TGG + chr8_4:52132775-52132794 Msa1332230:intron 30.0%
!!! GATAACTTGCCAAGTTTTTT+TGG - chr8_4:52132787-52132806 None:intergenic 30.0%
ATTAATGACAAACACAGCTT+TGG + chr8_4:52132887-52132906 Msa1332230:intron 30.0%
AGGCAATTGAAAATGCATTA+TGG + chr8_4:52132998-52133017 Msa1332230:exon 30.0%
! TTGAGTATGTATTAGGCTTT+TGG + chr8_4:52133047-52133066 Msa1332230:three_prime_UTR 30.0%
! TGAGTATGTATTAGGCTTTT+GGG + chr8_4:52133048-52133067 Msa1332230:three_prime_UTR 30.0%
CTAGATGAAATTACTTGACA+GGG - chr8_4:52133172-52133191 None:intergenic 30.0%
ACTAGATGAAATTACTTGAC+AGG - chr8_4:52133173-52133192 None:intergenic 30.0%
TATCACTAAAATTGCACGAT+GGG - chr8_4:52133200-52133219 None:intergenic 30.0%
!! TGCAATTTTAGTGATACTCA+TGG + chr8_4:52133204-52133223 Msa1332230:three_prime_UTR 30.0%
!!! GGTATATTAGCTTTCTCTTT+TGG + chr8_4:52133225-52133244 Msa1332230:three_prime_UTR 30.0%
TTTATGCTAAGATACCCAAA+CGG - chr8_4:52133294-52133313 None:intergenic 30.0%
TTGGGTATCTTAGCATAAAA+AGG + chr8_4:52133295-52133314 Msa1332230:three_prime_UTR 30.0%
TCTAAATTCTAACAGAGGAT+GGG - chr8_4:52133437-52133456 None:intergenic 30.0%
ATCTAAATTCTAACAGAGGA+TGG - chr8_4:52133438-52133457 None:intergenic 30.0%
CAACATCTAAATTCTAACAG+AGG - chr8_4:52133442-52133461 None:intergenic 30.0%
! ATCAACTTCTTCGGGATTTT+CGG - chr8_4:52128727-52128746 None:intergenic 35.0%
! AAAAAAACGGTACCTTTTCG+AGG - chr8_4:52128797-52128816 None:intergenic 35.0%
TAATGATGAAGCGAGTGATA+AGG + chr8_4:52128936-52128955 Msa1332230:CDS 35.0%
GTATAATGAGATTAGGAAGC+CGG + chr8_4:52128978-52128997 Msa1332230:CDS 35.0%
! GTTTTCCATGTTGTTACGTT+TGG + chr8_4:52129267-52129286 Msa1332230:intron 35.0%
ACAAACCAAACGTAACAACA+TGG - chr8_4:52129275-52129294 None:intergenic 35.0%
!! TTTGGTTTCACCATTTTCCA+TGG + chr8_4:52129389-52129408 Msa1332230:intron 35.0%
AAACCTAGCAATTGTTCAGA+AGG - chr8_4:52129517-52129536 None:intergenic 35.0%
CTTTGATTAACGGTTCTGTT+GGG + chr8_4:52129542-52129561 Msa1332230:intron 35.0%
! CAAGTATTTGAGTTCTCTTG+AGG + chr8_4:52129605-52129624 Msa1332230:CDS 35.0%
! TTTCAAATTTTCGGAAGAGG+GGG - chr8_4:52129696-52129715 None:intergenic 35.0%
GAATCCTCAAAATAGGGATT+GGG - chr8_4:52129856-52129875 None:intergenic 35.0%
TGAATCCTCAAAATAGGGAT+TGG - chr8_4:52129857-52129876 None:intergenic 35.0%
! TGCCTTCTTTCCATTTTATG+GGG - chr8_4:52129936-52129955 None:intergenic 35.0%
! CTTGCCTTCTTTCCATTTTA+TGG - chr8_4:52129938-52129957 None:intergenic 35.0%
CATAAAATGGAAAGAAGGCA+AGG + chr8_4:52129936-52129955 Msa1332230:CDS 35.0%
! AAAGTATCACTCAAGTTTGC+AGG + chr8_4:52130216-52130235 Msa1332230:intron 35.0%
!! TTACAGGCCTTTTAATTGTG+GGG - chr8_4:52130250-52130269 None:intergenic 35.0%
!! CATTACAGGCCTTTTAATTG+TGG - chr8_4:52130252-52130271 None:intergenic 35.0%
GTTGTATGAATCTGTTCACT+TGG + chr8_4:52130271-52130290 Msa1332230:intron 35.0%
TGTATGAATCTGTTCACTTG+GGG + chr8_4:52130273-52130292 Msa1332230:intron 35.0%
AAGACCTCTACAAGAACAAA+TGG + chr8_4:52130374-52130393 Msa1332230:intron 35.0%
AGACCTCTACAAGAACAAAT+GGG + chr8_4:52130375-52130394 Msa1332230:intron 35.0%
GATAGTTTAAGGGAAACTGT+TGG + chr8_4:52130422-52130441 Msa1332230:intron 35.0%
TTGTTGAGTGATCCATATAG+TGG + chr8_4:52130501-52130520 Msa1332230:intron 35.0%
CACATAATCCTGATACATGT+AGG + chr8_4:52130599-52130618 Msa1332230:intron 35.0%
ATGAGAAGAAAGGGAACAAA+AGG + chr8_4:52130643-52130662 Msa1332230:CDS 35.0%
! TTTGTTATCATGGACAAAGC+TGG - chr8_4:52130837-52130856 None:intergenic 35.0%
!! AACTCGTGAGTTTGTTATCA+TGG - chr8_4:52130847-52130866 None:intergenic 35.0%
TTATAATCCTGCCGTCAATT+AGG + chr8_4:52130865-52130884 Msa1332230:intron 35.0%
! ATCCCACAGTTTGATGATTA+CGG + chr8_4:52131089-52131108 Msa1332230:intron 35.0%
ATCCGTAATCATCAAACTGT+GGG - chr8_4:52131094-52131113 None:intergenic 35.0%
TATCCGTAATCATCAAACTG+TGG - chr8_4:52131095-52131114 None:intergenic 35.0%
! TAGTAATGGGAAAGTTGTTC+AGG - chr8_4:52131143-52131162 None:intergenic 35.0%
TCCATAGCAACGATAGTAAT+GGG - chr8_4:52131156-52131175 None:intergenic 35.0%
TTCCATAGCAACGATAGTAA+TGG - chr8_4:52131157-52131176 None:intergenic 35.0%
GCGAAAGAATCATATTGTAG+CGG + chr8_4:52131201-52131220 Msa1332230:intron 35.0%
TGACGGAGATAATTCTTCAA+AGG - chr8_4:52131325-52131344 None:intergenic 35.0%
TGTATACTTGATTGGAGGTT+TGG + chr8_4:52131415-52131434 Msa1332230:intron 35.0%
GTATACTTGATTGGAGGTTT+GGG + chr8_4:52131416-52131435 Msa1332230:intron 35.0%
AGGGACCTATTGGAAAAAAT+TGG - chr8_4:52131476-52131495 None:intergenic 35.0%
!! GTGAAAAGTATTGACCTTTC+AGG + chr8_4:52131580-52131599 Msa1332230:intron 35.0%
! TAAAGGCTTAAAGCTCCTTT+TGG + chr8_4:52131828-52131847 Msa1332230:intron 35.0%
! TTCAATGAAGCGTTTCCAAA+AGG - chr8_4:52131846-52131865 None:intergenic 35.0%
GAAACGCTTCATTGAACAAA+TGG + chr8_4:52131850-52131869 Msa1332230:intron 35.0%
ATGAATGCAGTTTCCTTAGT+TGG + chr8_4:52131899-52131918 Msa1332230:intron 35.0%
AGAAACTACTTGAGAAGAAC+AGG - chr8_4:52131987-52132006 None:intergenic 35.0%
GCTGATTGTAATATAACAGG+AGG + chr8_4:52132291-52132310 Msa1332230:intron 35.0%
!! AATGGAAGTTCCGTTTTTCT+TGG + chr8_4:52132357-52132376 Msa1332230:CDS 35.0%
!!! AACTTGCCAAGTTTTTTTGG+AGG - chr8_4:52132784-52132803 None:intergenic 35.0%
GTATCACTAAAATTGCACGA+TGG - chr8_4:52133201-52133220 None:intergenic 35.0%
! TTCCGACTATAGTTAACTTG+CGG - chr8_4:52133349-52133368 None:intergenic 35.0%
CAAGTTAACTATAGTCGGAA+AGG + chr8_4:52133349-52133368 Msa1332230:three_prime_UTR 35.0%
! AGCTTTATGCATAACTTTCC+TGG + chr8_4:52133372-52133391 Msa1332230:three_prime_UTR 35.0%
CTAAATTCTAACAGAGGATG+GGG - chr8_4:52133436-52133455 None:intergenic 35.0%
TAGATGTTGATATTCGCCAT+CGG + chr8_4:52133453-52133472 Msa1332230:three_prime_UTR 35.0%
TGATGAAGAAGAGAAAAGGG+TGG - chr8_4:52128629-52128648 None:intergenic 40.0%
AGTTCAGCATCAACTTCTTC+GGG - chr8_4:52128735-52128754 None:intergenic 40.0%
GAGTTCAGCATCAACTTCTT+CGG - chr8_4:52128736-52128755 None:intergenic 40.0%
GATCTCTTGCAATTTCTCGA+TGG - chr8_4:52128766-52128785 None:intergenic 40.0%
ACAGCATTCAACCAGAAATC+AGG - chr8_4:52129039-52129058 None:intergenic 40.0%
CTCATTCAGTAGTTCACTGA+GGG - chr8_4:52129189-52129208 None:intergenic 40.0%
GTGGACAAAACGAAACAGAA+TGG + chr8_4:52129365-52129384 Msa1332230:intron 40.0%
CCAACAGAACCGTTAATCAA+AGG - chr8_4:52129544-52129563 None:intergenic 40.0%
CCTTTGATTAACGGTTCTGT+TGG + chr8_4:52129541-52129560 Msa1332230:intron 40.0%
AGAAGAAGGGCAACTTACAA+GGG - chr8_4:52129670-52129689 None:intergenic 40.0%
! CAATCCCAATCCCTATTTTG+AGG + chr8_4:52129849-52129868 Msa1332230:CDS 40.0%
! ACTTTTACCTTCCGTGAAGA+AGG + chr8_4:52129889-52129908 Msa1332230:CDS 40.0%
TCTCTGTTGTTCCTTCTTCA+CGG - chr8_4:52129903-52129922 None:intergenic 40.0%
ACCCCCATAAAATGGAAAGA+AGG + chr8_4:52129931-52129950 Msa1332230:CDS 40.0%
! GCCTTCTTTCCATTTTATGG+GGG - chr8_4:52129935-52129954 None:intergenic 40.0%
AATGGAAAGAAGGCAAGGTA+AGG + chr8_4:52129941-52129960 Msa1332230:intron 40.0%
ATGGAAAGAAGGCAAGGTAA+GGG + chr8_4:52129942-52129961 Msa1332230:intron 40.0%
TCGAACTTGATGAGATGCAT+AGG + chr8_4:52130108-52130127 Msa1332230:intron 40.0%
CGAACTTGATGAGATGCATA+GGG + chr8_4:52130109-52130128 Msa1332230:intron 40.0%
GAGATGCATAGGGAAAATAG+TGG + chr8_4:52130119-52130138 Msa1332230:intron 40.0%
GTATGAATCTGTTCACTTGG+GGG + chr8_4:52130274-52130293 Msa1332230:intron 40.0%
GACCTCTACAAGAACAAATG+GGG + chr8_4:52130376-52130395 Msa1332230:intron 40.0%
TCTACAAGAACAAATGGGGA+GGG + chr8_4:52130380-52130399 Msa1332230:intron 40.0%
! AGGTCTTTTACCATGAGCTT+GGG - chr8_4:52130528-52130547 None:intergenic 40.0%
! AAGGTCTTTTACCATGAGCT+TGG - chr8_4:52130529-52130548 None:intergenic 40.0%
TACATGTAGGGAATACCCAA+TGG + chr8_4:52130612-52130631 Msa1332230:intron 40.0%
TTCTCATGATTGTCGCCATT+GGG - chr8_4:52130630-52130649 None:intergenic 40.0%
GCGACAATCATGAGAAGAAA+GGG + chr8_4:52130634-52130653 Msa1332230:CDS 40.0%
ATATTTCCTTACCTTCCGCT+TGG - chr8_4:52130996-52131015 None:intergenic 40.0%
AGCGGAAGGTAAGGAAATAT+TGG + chr8_4:52130996-52131015 Msa1332230:intron 40.0%
GCGGAAGGTAAGGAAATATT+GGG + chr8_4:52130997-52131016 Msa1332230:intron 40.0%
!! GAAAGTTGTTCAGGTTGTTG+AGG - chr8_4:52131134-52131153 None:intergenic 40.0%
TCCCATTACTATCGTTGCTA+TGG + chr8_4:52131152-52131171 Msa1332230:intron 40.0%
TTTCGCTATCAGTGCAATAG+CGG - chr8_4:52131187-52131206 None:intergenic 40.0%
TCCGTCAATTATTTGACGGA+TGG + chr8_4:52131338-52131357 Msa1332230:intron 40.0%
GCCATCCGTCAAATAATTGA+CGG - chr8_4:52131342-52131361 None:intergenic 40.0%
TGAATCCACCCGTCAAATAT+GGG - chr8_4:52131365-52131384 None:intergenic 40.0%
TTGAATCCACCCGTCAAATA+TGG - chr8_4:52131366-52131385 None:intergenic 40.0%
! TATTTGACGGGTGGATTCAA+TGG + chr8_4:52131366-52131385 Msa1332230:intron 40.0%
!! ATGGTGGATGTTTAAGAGTC+TGG + chr8_4:52131448-52131467 Msa1332230:intron 40.0%
! GCAAAGCACACAAGTTTTAC+TGG - chr8_4:52131500-52131519 None:intergenic 40.0%
GAGACTGCTCTTGACAATAT+GGG - chr8_4:52131533-52131552 None:intergenic 40.0%
AGAGACTGCTCTTGACAATA+TGG - chr8_4:52131534-52131553 None:intergenic 40.0%
!! TGGAAGAGTATCTTTATGCC+TGG + chr8_4:52131609-52131628 Msa1332230:intron 40.0%
AGCAAGACAGAGAGTAAAGT+AGG + chr8_4:52131702-52131721 Msa1332230:intron 40.0%
TCTGTCCTCAAATATGAAGG+TGG - chr8_4:52131757-52131776 None:intergenic 40.0%
GCTTCTGTCCTCAAATATGA+AGG - chr8_4:52131760-52131779 None:intergenic 40.0%
CACAGTCACAAAACCAACTA+AGG - chr8_4:52131915-52131934 None:intergenic 40.0%
CTGTGAGCAGAAAGATGATA+TGG + chr8_4:52131930-52131949 Msa1332230:CDS 40.0%
ACACGTGGAAAACAAAGACA+GGG - chr8_4:52132022-52132041 None:intergenic 40.0%
ATTAGTCAAGTAGAGACACG+TGG - chr8_4:52132037-52132056 None:intergenic 40.0%
GCAGCTTGCAGAATTAATCA+AGG + chr8_4:52132127-52132146 Msa1332230:intron 40.0%
CTCATCATCAGCTTCATCAT+CGG - chr8_4:52132335-52132354 None:intergenic 40.0%
! TGAAGCTGATGATGAGGTAA+TGG + chr8_4:52132339-52132358 Msa1332230:CDS 40.0%
GAGTTAATGCCCTGAAAGAA+AGG - chr8_4:52133088-52133107 None:intergenic 40.0%
CATTAACTCATGTCAGCAAG+TGG + chr8_4:52133099-52133118 Msa1332230:three_prime_UTR 40.0%
TACTGCATTTACTAGCCGTT+TGG + chr8_4:52133276-52133295 Msa1332230:three_prime_UTR 40.0%
ACTGCATTTACTAGCCGTTT+GGG + chr8_4:52133277-52133296 Msa1332230:three_prime_UTR 40.0%
TCCCGCAAGTTAACTATAGT+CGG + chr8_4:52133344-52133363 Msa1332230:three_prime_UTR 40.0%
!! TCCGACTATAGTTAACTTGC+GGG - chr8_4:52133348-52133367 None:intergenic 40.0%
GCATTTATGTTTCAGTTGCC+AGG - chr8_4:52133393-52133412 None:intergenic 40.0%
AGATGTTGATATTCGCCATC+GGG + chr8_4:52133454-52133473 Msa1332230:three_prime_UTR 40.0%
!! GAAAACGCGAAAGGGTGTTA+GGG - chr8_4:52128603-52128622 None:intergenic 45.0%
!! TGAAAACGCGAAAGGGTGTT+AGG - chr8_4:52128604-52128623 None:intergenic 45.0%
GGTGGAATGAAAACGCGAAA+GGG - chr8_4:52128611-52128630 None:intergenic 45.0%
CTCTTCTTCATCAACTTCCG+CGG + chr8_4:52128636-52128655 Msa1332230:five_prime_UTR 45.0%
GTTCTGTCTCCAACCATCTT+CGG - chr8_4:52128687-52128706 None:intergenic 45.0%
TTCGGTGAGTTTCTGCTTCT+TGG - chr8_4:52128709-52128728 None:intergenic 45.0%
CTTGCAATTTCTCGATGGAG+AGG - chr8_4:52128761-52128780 None:intergenic 45.0%
GATCCAAGATGACCTCGAAA+AGG + chr8_4:52128782-52128801 Msa1332230:CDS 45.0%
!! GTACCTTTTCGAGGTCATCT+TGG - chr8_4:52128788-52128807 None:intergenic 45.0%
TCGTTCCGCTTATCGTAAAC+CGG - chr8_4:52129000-52129019 None:intergenic 45.0%
TTCAGTAGTTCACTGAGGGT+AGG - chr8_4:52129185-52129204 None:intergenic 45.0%
CCTCATTCAGTAGTTCACTG+AGG - chr8_4:52129190-52129209 None:intergenic 45.0%
CCTCAGTGAACTACTGAATG+AGG + chr8_4:52129187-52129206 Msa1332230:CDS 45.0%
AAATTACTCGGCGTGTTCTG+TGG + chr8_4:52129309-52129328 Msa1332230:intron 45.0%
! TGTTTCGTTTTGTCCACGCT+GGG - chr8_4:52129362-52129381 None:intergenic 45.0%
CTAGCAATTGTTCAGAAGGC+AGG - chr8_4:52129513-52129532 None:intergenic 45.0%
CTGCCTTCTGAACAATTGCT+AGG + chr8_4:52129511-52129530 Msa1332230:intron 45.0%
GAGAAGAAGGGCAACTTACA+AGG - chr8_4:52129671-52129690 None:intergenic 45.0%
TGTTGTTCCTTCTTCACGGA+AGG - chr8_4:52129899-52129918 None:intergenic 45.0%
TCACTGCTACCCCCATAAAA+TGG + chr8_4:52129923-52129942 Msa1332230:CDS 45.0%
CTCCCCATTTGTTCTTGTAG+AGG - chr8_4:52130381-52130400 None:intergenic 45.0%
CTCTACAAGAACAAATGGGG+AGG + chr8_4:52130379-52130398 Msa1332230:intron 45.0%
ATGAGCTTGGGTCCACTATA+TGG - chr8_4:52130516-52130535 None:intergenic 45.0%
!! ATATAGTGGACCCAAGCTCA+TGG + chr8_4:52130515-52130534 Msa1332230:intron 45.0%
GGGTATTCCCTACATGTATC+AGG - chr8_4:52130610-52130629 None:intergenic 45.0%
CTTCTCATGATTGTCGCCAT+TGG - chr8_4:52130631-52130650 None:intergenic 45.0%
GGCGACAATCATGAGAAGAA+AGG + chr8_4:52130633-52130652 Msa1332230:CDS 45.0%
AAAGGTCAGCCAAGAACAAG+TGG - chr8_4:52130773-52130792 None:intergenic 45.0%
TTGATGTCCTAATTGACGGC+AGG - chr8_4:52130875-52130894 None:intergenic 45.0%
TTCCAATATGACCAAGCGGA+AGG + chr8_4:52130982-52131001 Msa1332230:intron 45.0%
TACCTTCCGCTTGGTCATAT+TGG - chr8_4:52130987-52131006 None:intergenic 45.0%
ATATGACCAAGCGGAAGGTA+AGG + chr8_4:52130987-52131006 Msa1332230:intron 45.0%
!! TTGTTCAGGTTGTTGAGGTC+TGG - chr8_4:52131129-52131148 None:intergenic 45.0%
! ATAGCGGAGCTATTGTGTAG+CGG - chr8_4:52131251-52131270 None:intergenic 45.0%
GAATCCACCCGTCAAATATG+GGG - chr8_4:52131364-52131383 None:intergenic 45.0%
! TTGATTGGAGGTTTGGGATC+AGG + chr8_4:52131422-52131441 Msa1332230:intron 45.0%
! TGATTGGAGGTTTGGGATCA+GGG + chr8_4:52131423-52131442 Msa1332230:intron 45.0%
! TTTTACTGGCAGGGACCTAT+TGG - chr8_4:52131486-52131505 None:intergenic 45.0%
! GCACACAAGTTTTACTGGCA+GGG - chr8_4:52131495-52131514 None:intergenic 45.0%
! AGCACACAAGTTTTACTGGC+AGG - chr8_4:52131496-52131515 None:intergenic 45.0%
ATTGACCTTTCAGGAGTCGA+TGG + chr8_4:52131589-52131608 Msa1332230:intron 45.0%
! AGAGTATCTTTATGCCTGGC+TGG + chr8_4:52131613-52131632 Msa1332230:intron 45.0%
GACACGTGGAAAACAAAGAC+AGG - chr8_4:52132023-52132042 None:intergenic 45.0%
! CGATGATGAAGCTGATGATG+AGG + chr8_4:52132333-52132352 Msa1332230:CDS 45.0%
CTTCTAGCAGCGATTTCTGA+AGG + chr8_4:52132555-52132574 Msa1332230:intron 45.0%
TTGTTCGCAGGAAAAAGACG+AGG + chr8_4:52132935-52132954 Msa1332230:intron 45.0%
TCTGAAGAGGATGACGAAGA+GGG + chr8_4:52132963-52132982 Msa1332230:CDS 45.0%
AGACCATGGCCTTTCTTTCA+GGG + chr8_4:52133076-52133095 Msa1332230:three_prime_UTR 45.0%
!! GACTATAGTTAACTTGCGGG+AGG - chr8_4:52133345-52133364 None:intergenic 45.0%
GGGTGGAATGAAAACGCGAA+AGG - chr8_4:52128612-52128631 None:intergenic 50.0%
TGTGTGAGTGAAGATTGCCG+CGG - chr8_4:52128656-52128675 None:intergenic 50.0%
GGCAATCTTCACTCACACAG+AGG + chr8_4:52128657-52128676 Msa1332230:five_prime_UTR 50.0%
! GGAAGCCGGTTTACGATAAG+CGG + chr8_4:52128992-52129011 Msa1332230:CDS 50.0%
GTAGTTCACTGAGGGTAGGA+TGG - chr8_4:52129181-52129200 None:intergenic 50.0%
!!! GTAGTAGTTTTGACCCAGCG+TGG + chr8_4:52129346-52129365 Msa1332230:intron 50.0%
! CTGTTTCGTTTTGTCCACGC+TGG - chr8_4:52129363-52129382 None:intergenic 50.0%
GAAGAGGGGGAAGAGAAGAA+GGG - chr8_4:52129683-52129702 None:intergenic 50.0%
CAAGAACAAATGGGGAGGGT+TGG + chr8_4:52130384-52130403 Msa1332230:intron 50.0%
AAAGGCCTCCTGTTGATGTC+AGG + chr8_4:52130661-52130680 Msa1332230:CDS 50.0%
ACCAACCTGACATCAACAGG+AGG - chr8_4:52130669-52130688 None:intergenic 50.0%
GACACCAACCTGACATCAAC+AGG - chr8_4:52130672-52130691 None:intergenic 50.0%
CATGGACAAAGCTGGAGAGT+GGG - chr8_4:52130829-52130848 None:intergenic 50.0%
TCATGGACAAAGCTGGAGAG+TGG - chr8_4:52130830-52130849 None:intergenic 50.0%
! GTTGAGGTCTGGAACGAACA+GGG - chr8_4:52131118-52131137 None:intergenic 50.0%
! TGTTGAGGTCTGGAACGAAC+AGG - chr8_4:52131119-52131138 None:intergenic 50.0%
TAGCGGAGCTATTGTGTAGC+GGG - chr8_4:52131250-52131269 None:intergenic 50.0%
ACGGATGGCCCCATATTTGA+CGG + chr8_4:52131353-52131372 Msa1332230:intron 50.0%
! GATTGGAGGTTTGGGATCAG+GGG + chr8_4:52131424-52131443 Msa1332230:intron 50.0%
!! CTCTTCCATCGACTCCTGAA+AGG - chr8_4:52131597-52131616 None:intergenic 50.0%
TATGGCTGACATTCACGACG+AGG + chr8_4:52131948-52131967 Msa1332230:CDS 50.0%
TCATCGGCATCCTCTTCATC+AGG - chr8_4:52132319-52132338 None:intergenic 50.0%
TGCGGTGATACTGTGCATAC+TGG + chr8_4:52132493-52132512 Msa1332230:intron 50.0%
! CTCTGAAGAGGATGACGAAG+AGG + chr8_4:52132962-52132981 Msa1332230:CDS 50.0%
! TGACGAAGAGGGTGATGATG+AGG + chr8_4:52132974-52132993 Msa1332230:CDS 50.0%
! GAAGAGGGTGATGATGAGGA+AGG + chr8_4:52132978-52132997 Msa1332230:CDS 50.0%
CAGACCATGGCCTTTCTTTC+AGG + chr8_4:52133075-52133094 Msa1332230:three_prime_UTR 50.0%
ATGCCCTGAAAGAAAGGCCA+TGG - chr8_4:52133082-52133101 None:intergenic 50.0%
GAGCTACACAAGCCAGTTAG+TGG + chr8_4:52133121-52133140 Msa1332230:three_prime_UTR 50.0%
ATGGTCGGAGAACCACTAAC+TGG - chr8_4:52133136-52133155 None:intergenic 50.0%
ACACAGAGGCGAACCGAAGA+TGG + chr8_4:52128671-52128690 Msa1332230:exon 55.0%
AGAGGCGAACCGAAGATGGT+TGG + chr8_4:52128675-52128694 Msa1332230:exon 55.0%
GGAAGAGGGGGAAGAGAAGA+AGG - chr8_4:52129684-52129703 None:intergenic 55.0%
ACTTGGGGGTTGCACAAGAC+AGG + chr8_4:52130288-52130307 Msa1332230:intron 55.0%
CTTGGGGGTTGCACAAGACA+GGG + chr8_4:52130289-52130308 Msa1332230:intron 55.0%
GCCTCCTGTTGATGTCAGGT+TGG + chr8_4:52130665-52130684 Msa1332230:intron 55.0%
CGGATGGCCCCATATTTGAC+GGG + chr8_4:52131354-52131373 Msa1332230:intron 55.0%
ATGGCCCCATATTTGACGGG+TGG + chr8_4:52131357-52131376 Msa1332230:intron 55.0%
! GAGGTTTGGGATCAGGGGTA+TGG + chr8_4:52131429-52131448 Msa1332230:intron 55.0%
! GTTTGGGATCAGGGGTATGG+TGG + chr8_4:52131432-52131451 Msa1332230:intron 55.0%
AGAGTAATGCACAGCCAGCC+AGG - chr8_4:52131630-52131649 None:intergenic 55.0%
ACAGGAGGAGCCTGATGAAG+AGG + chr8_4:52132306-52132325 Msa1332230:intron 55.0%
! AGACGAGGACGACTCTGAAG+AGG + chr8_4:52132950-52132969 Msa1332230:CDS 55.0%
! GCTTTTGGGCGTGCAGACCA+TGG + chr8_4:52133062-52133081 Msa1332230:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 52128595 52133490 52128595 ID=Msa1332230;Name=Msa1332230
chr8_4 mRNA 52128595 52133490 52128595 ID=Msa1332230-mRNA-1;Parent=Msa1332230;Name=Msa1332230-mRNA-1;_AED=0.04;_eAED=0.04;_QI=95|1|1|1|1|1|10|483|265
chr8_4 exon 52128595 52128803 52128595 ID=Msa1332230-mRNA-1:exon:15582;Parent=Msa1332230-mRNA-1
chr8_4 exon 52128934 52129056 52128934 ID=Msa1332230-mRNA-1:exon:15583;Parent=Msa1332230-mRNA-1
chr8_4 exon 52129170 52129220 52129170 ID=Msa1332230-mRNA-1:exon:15584;Parent=Msa1332230-mRNA-1
chr8_4 exon 52129600 52129671 52129600 ID=Msa1332230-mRNA-1:exon:15585;Parent=Msa1332230-mRNA-1
chr8_4 exon 52129844 52129957 52129844 ID=Msa1332230-mRNA-1:exon:15586;Parent=Msa1332230-mRNA-1
chr8_4 exon 52130621 52130682 52130621 ID=Msa1332230-mRNA-1:exon:15587;Parent=Msa1332230-mRNA-1
chr8_4 exon 52131909 52131969 52131909 ID=Msa1332230-mRNA-1:exon:15588;Parent=Msa1332230-mRNA-1
chr8_4 exon 52132131 52132187 52132131 ID=Msa1332230-mRNA-1:exon:15589;Parent=Msa1332230-mRNA-1
chr8_4 exon 52132310 52132390 52132310 ID=Msa1332230-mRNA-1:exon:15590;Parent=Msa1332230-mRNA-1
chr8_4 exon 52132945 52133490 52132945 ID=Msa1332230-mRNA-1:exon:15591;Parent=Msa1332230-mRNA-1
chr8_4 five_prime_UTR 52128595 52128689 52128595 ID=Msa1332230-mRNA-1:five_prime_utr;Parent=Msa1332230-mRNA-1
chr8_4 CDS 52128690 52128803 52128690 ID=Msa1332230-mRNA-1:cds;Parent=Msa1332230-mRNA-1
chr8_4 CDS 52128934 52129056 52128934 ID=Msa1332230-mRNA-1:cds;Parent=Msa1332230-mRNA-1
chr8_4 CDS 52129170 52129220 52129170 ID=Msa1332230-mRNA-1:cds;Parent=Msa1332230-mRNA-1
chr8_4 CDS 52129600 52129671 52129600 ID=Msa1332230-mRNA-1:cds;Parent=Msa1332230-mRNA-1
chr8_4 CDS 52129844 52129957 52129844 ID=Msa1332230-mRNA-1:cds;Parent=Msa1332230-mRNA-1
chr8_4 CDS 52130621 52130682 52130621 ID=Msa1332230-mRNA-1:cds;Parent=Msa1332230-mRNA-1
chr8_4 CDS 52131909 52131969 52131909 ID=Msa1332230-mRNA-1:cds;Parent=Msa1332230-mRNA-1
chr8_4 CDS 52132131 52132187 52132131 ID=Msa1332230-mRNA-1:cds;Parent=Msa1332230-mRNA-1
chr8_4 CDS 52132310 52132390 52132310 ID=Msa1332230-mRNA-1:cds;Parent=Msa1332230-mRNA-1
chr8_4 CDS 52132945 52133007 52132945 ID=Msa1332230-mRNA-1:cds;Parent=Msa1332230-mRNA-1
chr8_4 three_prime_UTR 52133008 52133490 52133008 ID=Msa1332230-mRNA-1:three_prime_utr;Parent=Msa1332230-mRNA-1
Gene Sequence

>Msa1332230

ATGGTTGGAGACAGAACCAAGAAGCAGAAACTCACCGAAAATCCCGAAGAAGTTGATGCTGAACTCATCCTCTCCATCGAGAAATTGCAAGAGATCCAAGATGACCTCGAAAAGATTAATGATGAAGCGAGTGATAAGGTTCTCGAAATTGAGCAGAAGTATAATGAGATTAGGAAGCCGGTTTACGATAAGCGGAACGAGATTATCAAATCTATTCCTGATTTCTGGTTGAATGCTTTTTTGAGCCATCCTACCCTCAGTGAACTACTGAATGAGGAAGATCAAAAAATATTCAAGTATTTGAGTTCTCTTGAGGTTGAAGATAATAAGGATGTCAAATCTGGATACACAATCACCCTTAATTTCAATCCCAATCCCTATTTTGAGGATTCAAAACTTTCAAAGACTTTTACCTTCCGTGAAGAAGGAACAACAGAGATCACTGCTACCCCCATAAAATGGAAAGAAGGCAAGGGAATACCCAATGGCGACAATCATGAGAAGAAAGGGAACAAAAGGCCTCCTGTTGATGTCAGTTTCCTTAGTTGGTTTTGTGACTGTGAGCAGAAAGATGATATGGCTGACATTCACGACGAGCTTGCAGAATTAATCAAGGATGATTTATGGTCAAATCCACTCATTTATTTCAACAGTGAGGAGCCTGATGAAGAGGATGCCGATGATGAAGCTGATGATGAGGTAATGGAAGTTCCGTTTTTCTTGGAAAAAATAGAGGAAAAAGACGAGGACGACTCTGAAGAGGATGACGAAGAGGGTGATGATGAGGAAGGCAATTGA

Protein sequence

>Msa1332230

MVGDRTKKQKLTENPEEVDAELILSIEKLQEIQDDLEKINDEASDKVLEIEQKYNEIRKPVYDKRNEIIKSIPDFWLNAFLSHPTLSELLNEEDQKIFKYLSSLEVEDNKDVKSGYTITLNFNPNPYFEDSKLSKTFTFREEGTTEITATPIKWKEGKGIPNGDNHEKKGNKRPPVDVSFLSWFCDCEQKDDMADIHDELAELIKDDLWSNPLIYFNSEEPDEEDADDEADDEVMEVPFFLEKIEEKDEDDSEEDDEEGDDEEGN*