Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1332230 | sp|Q8LC68|NRP2_ARATH | 73.182 | 220 | 57 | 2 | 1 | 218 | 1 | 220 | 7.45e-113 | 328 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1332230 | A0A072UQ45 | 99.248 | 266 | 1 | 1 | 1 | 265 | 1 | 266 | 0.0 | 520 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0002430 | Msa1332230 | 0.860276 | 2.312527e-63 | -8.615850e-47 |
Msa0018050 | Msa1332230 | 0.830649 | 2.607167e-55 | -8.615850e-47 |
Msa0071760 | Msa1332230 | 0.820680 | 6.036007e-53 | -8.615850e-47 |
Msa0097380 | Msa1332230 | 0.825170 | 5.423570e-54 | -8.615850e-47 |
Msa0648620 | Msa1332230 | 0.819122 | 1.370880e-52 | -8.615850e-47 |
Msa0648670 | Msa1332230 | 0.819555 | 1.092131e-52 | -8.615850e-47 |
Msa0728870 | Msa1332230 | 0.800207 | 1.605796e-48 | -8.615850e-47 |
Msa0136400 | Msa1332230 | 0.856680 | 2.731064e-62 | -8.615850e-47 |
Msa0208190 | Msa1332230 | 0.857251 | 1.854234e-62 | -8.615850e-47 |
Msa0208290 | Msa1332230 | 0.845119 | 4.955265e-59 | -8.615850e-47 |
Msa0208320 | Msa1332230 | 0.858626 | 7.240325e-63 | -8.615850e-47 |
Msa1257450 | Msa1332230 | 0.858383 | 8.557762e-63 | -8.615850e-47 |
Msa1299690 | Msa1332230 | 0.928817 | 1.687634e-92 | -8.615850e-47 |
Msa1305260 | Msa1332230 | 0.873073 | 1.949748e-67 | -8.615850e-47 |
Msa1331510 | Msa1332230 | 0.806569 | 7.718415e-50 | -8.615850e-47 |
Msa1332230 | Msa1341130 | 0.824676 | 7.095761e-54 | -8.615850e-47 |
Msa1332230 | Msa1341780 | 0.823491 | 1.346214e-53 | -8.615850e-47 |
Msa1332230 | Msa1344160 | 0.851893 | 6.596150e-61 | -8.615850e-47 |
Msa1332230 | Msa1344190 | 0.844447 | 7.518011e-59 | -8.615850e-47 |
Msa1332230 | Msa1364810 | 0.811689 | 6.175966e-51 | -8.615850e-47 |
Msa1332230 | Msa1415620 | 0.802457 | 5.560542e-49 | -8.615850e-47 |
Msa1332230 | Msa1418980 | 0.831515 | 1.598360e-55 | -8.615850e-47 |
Msa1332230 | Msa1433590 | 0.966276 | 1.051906e-125 | -8.615850e-47 |
Msa0383690 | Msa1332230 | 0.804366 | 2.235791e-49 | -8.615850e-47 |
Msa0432750 | Msa1332230 | 0.807552 | 4.779699e-50 | -8.615850e-47 |
Msa0479980 | Msa1332230 | 0.812731 | 3.657343e-51 | -8.615850e-47 |
Msa1022730 | Msa1332230 | 0.805234 | 1.473084e-49 | -8.615850e-47 |
Msa1037080 | Msa1332230 | 0.809749 | 1.622407e-50 | -8.615850e-47 |
Msa1070810 | Msa1332230 | 0.802193 | 6.299708e-49 | -8.615850e-47 |
Msa1106870 | Msa1332230 | 0.849149 | 3.892942e-60 | -8.615850e-47 |
Msa0262400 | Msa1332230 | 0.840132 | 1.045194e-57 | -8.615850e-47 |
Msa0337750 | Msa1332230 | 0.829554 | 4.824267e-55 | -8.615850e-47 |
Msa1115190 | Msa1332230 | 0.803255 | 3.803558e-49 | -8.615850e-47 |
Msa1116940 | Msa1332230 | 0.804861 | 1.762607e-49 | -8.615850e-47 |
Msa1136880 | Msa1332230 | 0.838680 | 2.490473e-57 | -8.615850e-47 |
Msa1158630 | Msa1332230 | 0.809526 | 1.811595e-50 | -8.615850e-47 |
Msa1207200 | Msa1332230 | 0.855150 | 7.652510e-62 | -8.615850e-47 |
Msa1211820 | Msa1332230 | 0.959019 | 5.546836e-117 | -8.615850e-47 |
Msa1218110 | Msa1332230 | 0.829404 | 5.246296e-55 | -8.615850e-47 |
Msa0550490 | Msa1332230 | 0.834987 | 2.180552e-56 | -8.615850e-47 |
Msa0554210 | Msa1332230 | 0.839307 | 1.713831e-57 | -8.615850e-47 |
Msa0560740 | Msa1332230 | 0.812134 | 4.938196e-51 | -8.615850e-47 |
Msa0587830 | Msa1332230 | 0.807369 | 5.228885e-50 | -8.615850e-47 |
Msa0587850 | Msa1332230 | 0.824439 | 8.066038e-54 | -8.615850e-47 |
Msa0877540 | Msa1332230 | 0.812568 | 3.971775e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1332230 | MtrunA17_Chr4g0060621 | 99.248 | 266 | 1 | 1 | 1 | 265 | 1 | 266 | 0.0 | 520 |
Msa1332230 | MtrunA17_Chr3g0092521 | 78.281 | 221 | 45 | 1 | 1 | 218 | 1 | 221 | 9.42e-127 | 360 |
Msa1332230 | MtrunA17_Chr4g0064221 | 62.868 | 272 | 81 | 5 | 5 | 265 | 105 | 367 | 7.19e-107 | 314 |
Msa1332230 | MtrunA17_Chr6g0487861 | 48.810 | 84 | 42 | 1 | 57 | 139 | 2 | 85 | 4.63e-25 | 95.1 |
Msa1332230 | MtrunA17_Chr6g0487691 | 48.810 | 84 | 42 | 1 | 57 | 139 | 2 | 85 | 4.63e-25 | 95.1 |
Msa1332230 | MtrunA17_Chr6g0487501 | 39.496 | 119 | 59 | 2 | 100 | 206 | 38 | 155 | 3.06e-20 | 84.7 |
Msa1332230 | MtrunA17_Chr2g0299501 | 27.957 | 186 | 103 | 4 | 5 | 160 | 30 | 214 | 1.01e-12 | 67.4 |
Msa1332230 | MtrunA17_Chr2g0330141 | 27.568 | 185 | 102 | 4 | 7 | 160 | 30 | 213 | 3.50e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1332230 | AT1G18800.1 | 72.851 | 221 | 57 | 3 | 1 | 218 | 1 | 221 | 5.40e-112 | 323 |
Msa1332230 | AT1G74560.1 | 73.171 | 205 | 53 | 2 | 17 | 219 | 22 | 226 | 4.57e-108 | 313 |
Msa1332230 | AT1G74560.3 | 73.333 | 195 | 50 | 2 | 17 | 209 | 22 | 216 | 3.01e-102 | 298 |
Msa1332230 | AT2G19480.2 | 26.380 | 163 | 91 | 3 | 26 | 160 | 55 | 216 | 9.78e-11 | 62.0 |
Msa1332230 | AT2G19480.1 | 26.380 | 163 | 91 | 3 | 26 | 160 | 55 | 216 | 9.93e-11 | 62.0 |
Find 99 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGACCATGGCCTTTCTTTC+AGG | 0.071837 | 8_4:+52133075 | Msa1332230:three_prime_UTR |
TCAAATCTATTCCTGATTTC+TGG | 0.142000 | 8_4:+52129025 | Msa1332230:CDS |
GGTATATTAGCTTTCTCTTT+TGG | 0.151187 | 8_4:+52133225 | Msa1332230:three_prime_UTR |
TTCGGTGAGTTTCTGCTTCT+TGG | 0.176469 | 8_4:-52128706 | None:intergenic |
TTGAGTATGTATTAGGCTTT+TGG | 0.206492 | 8_4:+52133047 | Msa1332230:three_prime_UTR |
TTGGGTATCTTAGCATAAAA+AGG | 0.247822 | 8_4:+52133295 | Msa1332230:three_prime_UTR |
ACAGGGTAATTGATAAATTA+TGG | 0.281625 | 8_4:-52133152 | None:intergenic |
TGCATGATTATAATTTATAT+TGG | 0.287040 | 8_4:+52133410 | Msa1332230:three_prime_UTR |
AATTAATCAAGGATGATTTA+TGG | 0.308424 | 8_4:+52132138 | Msa1332230:CDS |
TCTTGAGGTTGAAGATAATA+AGG | 0.335371 | 8_4:+52129620 | Msa1332230:CDS |
AGCTTTATGCATAACTTTCC+TGG | 0.337844 | 8_4:+52133372 | Msa1332230:three_prime_UTR |
TGAAAACGCGAAAGGGTGTT+AGG | 0.338957 | 8_4:-52128601 | None:intergenic |
GATAATAAGGATGTCAAATC+TGG | 0.344818 | 8_4:+52129633 | Msa1332230:CDS |
TACTGCATTTACTAGCCGTT+TGG | 0.353047 | 8_4:+52133276 | Msa1332230:three_prime_UTR |
AGTTCAGCATCAACTTCTTC+GGG | 0.365326 | 8_4:-52128732 | None:intergenic |
CTTCTCATGATTGTCGCCAT+TGG | 0.369583 | 8_4:-52130628 | None:intergenic |
GAGTTCAGCATCAACTTCTT+CGG | 0.373422 | 8_4:-52128733 | None:intergenic |
ATGAATGCAGTTTCCTTAGT+TGG | 0.378489 | 8_4:+52131899 | Msa1332230:intron |
TTCTCATGATTGTCGCCATT+GGG | 0.394389 | 8_4:-52130627 | None:intergenic |
AGGCAATTGAAAATGCATTA+TGG | 0.398971 | 8_4:+52132998 | Msa1332230:exon |
TCCGACTATAGTTAACTTGC+GGG | 0.399219 | 8_4:-52133345 | None:intergenic |
ACTGCATTTACTAGCCGTTT+GGG | 0.400007 | 8_4:+52133277 | Msa1332230:three_prime_UTR |
TGAATCCTCAAAATAGGGAT+TGG | 0.404769 | 8_4:-52129854 | None:intergenic |
AGACCATGGCCTTTCTTTCA+GGG | 0.412109 | 8_4:+52133076 | Msa1332230:three_prime_UTR |
GAATCCTCAAAATAGGGATT+GGG | 0.412238 | 8_4:-52129853 | None:intergenic |
GTTCTGTCTCCAACCATCTT+CGG | 0.412928 | 8_4:-52128684 | None:intergenic |
GACACCAACCTGACATCAAC+AGG | 0.420723 | 8_4:-52130669 | None:intergenic |
TCTCTGTTGTTCCTTCTTCA+CGG | 0.428176 | 8_4:-52129900 | None:intergenic |
GCATTTATGTTTCAGTTGCC+AGG | 0.432385 | 8_4:-52133390 | None:intergenic |
ACTAGATGAAATTACTTGAC+AGG | 0.444435 | 8_4:-52133170 | None:intergenic |
AAGTTGATGAAGAAGAGAAA+AGG | 0.450896 | 8_4:-52128630 | None:intergenic |
ACAGCATTCAACCAGAAATC+AGG | 0.453818 | 8_4:-52129036 | None:intergenic |
TCATCGGCATCCTCTTCATC+AGG | 0.453926 | 8_4:-52132316 | None:intergenic |
ATGGTCGGAGAACCACTAAC+TGG | 0.454059 | 8_4:-52133133 | None:intergenic |
TCGTTCCGCTTATCGTAAAC+CGG | 0.454701 | 8_4:-52128997 | None:intergenic |
GAGTTAATGCCCTGAAAGAA+AGG | 0.464958 | 8_4:-52133085 | None:intergenic |
ATGAGAAGAAAGGGAACAAA+AGG | 0.469606 | 8_4:+52130643 | Msa1332230:CDS |
AGATGTTGATATTCGCCATC+GGG | 0.470851 | 8_4:+52133454 | Msa1332230:three_prime_UTR |
CTGTGAGCAGAAAGATGATA+TGG | 0.473510 | 8_4:+52131930 | Msa1332230:CDS |
AGTTGATGAAGAAGAGAAAA+GGG | 0.474749 | 8_4:-52128629 | None:intergenic |
GGCGACAATCATGAGAAGAA+AGG | 0.484157 | 8_4:+52130633 | Msa1332230:CDS |
ATCTAAATTCTAACAGAGGA+TGG | 0.486341 | 8_4:-52133435 | None:intergenic |
AAAGGCCTCCTGTTGATGTC+AGG | 0.487205 | 8_4:+52130661 | Msa1332230:CDS |
AGCAGAAGTATAATGAGATT+AGG | 0.487313 | 8_4:+52128971 | Msa1332230:CDS |
CACAGTCACAAAACCAACTA+AGG | 0.487948 | 8_4:-52131912 | None:intergenic |
GCAGCTTGCAGAATTAATCA+AGG | 0.516175 | 8_4:+52132127 | Msa1332230:intron |
GTATAATGAGATTAGGAAGC+CGG | 0.518765 | 8_4:+52128978 | Msa1332230:CDS |
TGTTGTTCCTTCTTCACGGA+AGG | 0.521205 | 8_4:-52129896 | None:intergenic |
ACACAGAGGCGAACCGAAGA+TGG | 0.523143 | 8_4:+52128671 | Msa1332230:exon |
GAGCTACACAAGCCAGTTAG+TGG | 0.523204 | 8_4:+52133121 | Msa1332230:three_prime_UTR |
TCTAAATTCTAACAGAGGAT+GGG | 0.525688 | 8_4:-52133434 | None:intergenic |
GCGACAATCATGAGAAGAAA+GGG | 0.529007 | 8_4:+52130634 | Msa1332230:CDS |
TAATGATGAAGCGAGTGATA+AGG | 0.530659 | 8_4:+52128936 | Msa1332230:CDS |
TGAAGCTGATGATGAGGTAA+TGG | 0.532222 | 8_4:+52132339 | Msa1332230:CDS |
GAAAACGCGAAAGGGTGTTA+GGG | 0.538787 | 8_4:-52128600 | None:intergenic |
GATCCAAGATGACCTCGAAA+AGG | 0.540267 | 8_4:+52128782 | Msa1332230:CDS |
TATCACTAAAATTGCACGAT+GGG | 0.540851 | 8_4:-52133197 | None:intergenic |
CTCATTCAGTAGTTCACTGA+GGG | 0.542426 | 8_4:-52129186 | None:intergenic |
TTCCGACTATAGTTAACTTG+CGG | 0.542706 | 8_4:-52133346 | None:intergenic |
TGACGAAGAGGGTGATGATG+AGG | 0.543527 | 8_4:+52132974 | Msa1332230:CDS |
CTCTTCTTCATCAACTTCCG+CGG | 0.546448 | 8_4:+52128636 | Msa1332230:five_prime_UTR |
CTCATCATCAGCTTCATCAT+CGG | 0.555556 | 8_4:-52132332 | None:intergenic |
CAAGTATTTGAGTTCTCTTG+AGG | 0.559002 | 8_4:+52129605 | Msa1332230:CDS |
GATCTCTTGCAATTTCTCGA+TGG | 0.566477 | 8_4:-52128763 | None:intergenic |
TCCCGCAAGTTAACTATAGT+CGG | 0.568159 | 8_4:+52133344 | Msa1332230:three_prime_UTR |
GTAGTTCACTGAGGGTAGGA+TGG | 0.569898 | 8_4:-52129178 | None:intergenic |
CCTCAGTGAACTACTGAATG+AGG | 0.570986 | 8_4:+52129187 | Msa1332230:CDS |
ACAGGAGGAGCCTGATGAAG+AGG | 0.571562 | 8_4:+52132306 | Msa1332230:intron |
CTAAATTCTAACAGAGGATG+GGG | 0.571769 | 8_4:-52133433 | None:intergenic |
GGTGGAATGAAAACGCGAAA+GGG | 0.576072 | 8_4:-52128608 | None:intergenic |
TAGATGTTGATATTCGCCAT+CGG | 0.578538 | 8_4:+52133453 | Msa1332230:three_prime_UTR |
AGAGGCGAACCGAAGATGGT+TGG | 0.579592 | 8_4:+52128675 | Msa1332230:exon |
CATAAAATGGAAAGAAGGCA+AGG | 0.587844 | 8_4:+52129936 | Msa1332230:CDS |
CAAGTTAACTATAGTCGGAA+AGG | 0.588633 | 8_4:+52133349 | Msa1332230:three_prime_UTR |
TTTATGCTAAGATACCCAAA+CGG | 0.589342 | 8_4:-52133291 | None:intergenic |
ATGCCCTGAAAGAAAGGCCA+TGG | 0.592269 | 8_4:-52133079 | None:intergenic |
TGATGAAGAAGAGAAAAGGG+TGG | 0.594767 | 8_4:-52128626 | None:intergenic |
CTAGATGAAATTACTTGACA+GGG | 0.597629 | 8_4:-52133169 | None:intergenic |
CTTGCAATTTCTCGATGGAG+AGG | 0.599246 | 8_4:-52128758 | None:intergenic |
AGACGAGGACGACTCTGAAG+AGG | 0.603159 | 8_4:+52132950 | Msa1332230:CDS |
GGGTGGAATGAAAACGCGAA+AGG | 0.604662 | 8_4:-52128609 | None:intergenic |
GGAAGCCGGTTTACGATAAG+CGG | 0.605546 | 8_4:+52128992 | Msa1332230:CDS |
CATTAACTCATGTCAGCAAG+TGG | 0.610410 | 8_4:+52133099 | Msa1332230:three_prime_UTR |
GGTAATTGATAAATTATGGT+CGG | 0.611413 | 8_4:-52133148 | None:intergenic |
CTCTGAAGAGGATGACGAAG+AGG | 0.619244 | 8_4:+52132962 | Msa1332230:CDS |
TCTGAAGAGGATGACGAAGA+GGG | 0.630726 | 8_4:+52132963 | Msa1332230:CDS |
TTCAGTAGTTCACTGAGGGT+AGG | 0.637147 | 8_4:-52129182 | None:intergenic |
GAAGAGGGTGATGATGAGGA+AGG | 0.646490 | 8_4:+52132978 | Msa1332230:CDS |
CAACATCTAAATTCTAACAG+AGG | 0.650545 | 8_4:-52133439 | None:intergenic |
GACTATAGTTAACTTGCGGG+AGG | 0.653498 | 8_4:-52133342 | None:intergenic |
TACATGTAGGGAATACCCAA+TGG | 0.673035 | 8_4:+52130612 | Msa1332230:intron |
CGATGATGAAGCTGATGATG+AGG | 0.673202 | 8_4:+52132333 | Msa1332230:CDS |
ACACTGTTGAAATAAATGAG+TGG | 0.676235 | 8_4:-52132167 | None:intergenic |
CCTCATTCAGTAGTTCACTG+AGG | 0.684849 | 8_4:-52129187 | None:intergenic |
ACCAACCTGACATCAACAGG+AGG | 0.699036 | 8_4:-52130666 | None:intergenic |
GTATCACTAAAATTGCACGA+TGG | 0.702616 | 8_4:-52133198 | None:intergenic |
GGCAATCTTCACTCACACAG+AGG | 0.721891 | 8_4:+52128657 | Msa1332230:five_prime_UTR |
TATGGCTGACATTCACGACG+AGG | 0.776284 | 8_4:+52131948 | Msa1332230:CDS |
TGTGTGAGTGAAGATTGCCG+CGG | 0.840253 | 8_4:-52128653 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTAAATATATGATAGTTTA+AGG | + | chr8_4:52130411-52130430 | Msa1332230:intron | 10.0% |
!! | TTAAATATATGATAGTTTAA+GGG | + | chr8_4:52130412-52130431 | Msa1332230:intron | 10.0% |
!! | AAATGTTAATATAAAGAATA+TGG | + | chr8_4:52132627-52132646 | Msa1332230:intron | 10.0% |
!!! | ATTGTGTTTTAATAATTATG+TGG | + | chr8_4:52128886-52128905 | Msa1332230:intron | 15.0% |
!! | ATATCTATCAAATAAAGAAT+TGG | - | chr8_4:52129584-52129603 | None:intergenic | 15.0% |
!! | AAAAATTATAAATGCTGATA+GGG | - | chr8_4:52129988-52130007 | None:intergenic | 15.0% |
!! | TAAAAATTATAAATGCTGAT+AGG | - | chr8_4:52129989-52130008 | None:intergenic | 15.0% |
!! | TCAACAACAAAAAATATATA+AGG | - | chr8_4:52130488-52130507 | None:intergenic | 15.0% |
!!! | CATTTTGTATAAACATATAA+AGG | - | chr8_4:52130791-52130810 | None:intergenic | 15.0% |
!!! | AAATGTTTTTTTACATGAAA+GGG | - | chr8_4:52131660-52131679 | None:intergenic | 15.0% |
!!! | AAAATGTTTTTTTACATGAA+AGG | - | chr8_4:52131661-52131680 | None:intergenic | 15.0% |
!!! | TTCACATTATTTATTGTTTT+CGG | - | chr8_4:52132732-52132751 | None:intergenic | 15.0% |
!! | TGTTTGTCATTAATTTAAAA+TGG | - | chr8_4:52132881-52132900 | None:intergenic | 15.0% |
!! | TGCATGATTATAATTTATAT+TGG | + | chr8_4:52133410-52133429 | Msa1332230:three_prime_UTR | 15.0% |
!! | GCTTCAATTGAATAAAAAAA+CGG | - | chr8_4:52128810-52128829 | None:intergenic | 20.0% |
!! | AACACAATTCAAATCAAATT+AGG | - | chr8_4:52128874-52128893 | None:intergenic | 20.0% |
!!! | TGAAGTGATTTTCAAATTTT+CGG | - | chr8_4:52129705-52129724 | None:intergenic | 20.0% |
!! | AAAATTATAAATGCTGATAG+GGG | - | chr8_4:52129987-52130006 | None:intergenic | 20.0% |
!!! | ATAAATCATAAGTTTCAAGT+AGG | + | chr8_4:52130156-52130175 | Msa1332230:intron | 20.0% |
!!! | TAAATCATAAGTTTCAAGTA+GGG | + | chr8_4:52130157-52130176 | Msa1332230:intron | 20.0% |
!! | TGATTAGAAATACAATCATT+AGG | + | chr8_4:52130341-52130360 | Msa1332230:intron | 20.0% |
!!! | AATCCTTTTAAAGTAGATTT+AGG | - | chr8_4:52131063-52131082 | None:intergenic | 20.0% |
!! | ATTTGCAAATGAAAATACTT+TGG | - | chr8_4:52131283-52131302 | None:intergenic | 20.0% |
!! | TTTGAGAAATATGTTGTTAA+AGG | + | chr8_4:52131811-52131830 | Msa1332230:intron | 20.0% |
!! | AGTGAATTGAATATTATACA+AGG | - | chr8_4:52132102-52132121 | None:intergenic | 20.0% |
!! | AATTAATCAAGGATGATTTA+TGG | + | chr8_4:52132138-52132157 | Msa1332230:CDS | 20.0% |
!! | AAAATGACAAATAATGCATT+TGG | - | chr8_4:52132233-52132252 | None:intergenic | 20.0% |
!!! | TCTATTTTTTCCAAGAAAAA+CGG | - | chr8_4:52132370-52132389 | None:intergenic | 20.0% |
!! | TATTGCTCATAATAATTGTT+TGG | + | chr8_4:52132414-52132433 | Msa1332230:intron | 20.0% |
!! | TGAAAATTATGAATTCAGTA+TGG | - | chr8_4:52132459-52132478 | None:intergenic | 20.0% |
!! | TTAATCCTAAACATTGTTAA+AGG | + | chr8_4:52132822-52132841 | Msa1332230:intron | 20.0% |
!! | CTCAAACCAAAAAAATAAAA+AGG | - | chr8_4:52133032-52133051 | None:intergenic | 20.0% |
! | ATTATTTGATCCACCAAATT+AGG | + | chr8_4:52128844-52128863 | Msa1332230:intron | 25.0% |
! | CAAATTAGGTTAACCTAATT+TGG | - | chr8_4:52128858-52128877 | None:intergenic | 25.0% |
!!! | TTCTGTGGAAGTATTTTTTA+AGG | + | chr8_4:52129324-52129343 | Msa1332230:intron | 25.0% |
! | CATGAAAGAACATAATAAGT+GGG | - | chr8_4:52129484-52129503 | None:intergenic | 25.0% |
! | ACATGAAAGAACATAATAAG+TGG | - | chr8_4:52129485-52129504 | None:intergenic | 25.0% |
!! | ATTTTCAAATTTTCGGAAGA+GGG | - | chr8_4:52129698-52129717 | None:intergenic | 25.0% |
! | CTTCATTGCAATGAAAAATA+TGG | + | chr8_4:52129720-52129739 | Msa1332230:intron | 25.0% |
!!! | AGTTTTGAATCCTCAAAATA+GGG | - | chr8_4:52129862-52129881 | None:intergenic | 25.0% |
!!! | AAGTTTTGAATCCTCAAAAT+AGG | - | chr8_4:52129863-52129882 | None:intergenic | 25.0% |
!!! | TTAAACTTGCTAAAAGTAGA+GGG | + | chr8_4:52130071-52130090 | Msa1332230:intron | 25.0% |
! | AATCTGTAAATCTCACAATT+TGG | - | chr8_4:52130448-52130467 | None:intergenic | 25.0% |
! | TTGTGAGATTTACAGATTAA+TGG | + | chr8_4:52130450-52130469 | Msa1332230:intron | 25.0% |
! | CTGTCGAAAAAAAAAAAAGA+AGG | - | chr8_4:52130548-52130567 | None:intergenic | 25.0% |
!!! | TCTTTTTTTTTTTTCGACAG+AGG | + | chr8_4:52130548-52130567 | Msa1332230:intron | 25.0% |
! | GTTAGTAAAATACAACAACA+AGG | - | chr8_4:52130580-52130599 | None:intergenic | 25.0% |
! | GTTTATACAAAATGAACTTC+TGG | + | chr8_4:52130797-52130816 | Msa1332230:intron | 25.0% |
! | TTTATTGATGTCCTAATTGA+CGG | - | chr8_4:52130879-52130898 | None:intergenic | 25.0% |
! | TCAATTAGGACATCAATAAA+GGG | + | chr8_4:52130879-52130898 | Msa1332230:intron | 25.0% |
! | AAAAAAGGAAAAGAGGAATT+TGG | - | chr8_4:52130939-52130958 | None:intergenic | 25.0% |
! | ACTGAAAAGAAGAAGAAAAA+AGG | - | chr8_4:52130954-52130973 | None:intergenic | 25.0% |
! | ATGCCTAAATCTACTTTAAA+AGG | + | chr8_4:52131057-52131076 | Msa1332230:intron | 25.0% |
! | ACTTTGGTATTGTTAAATAG+CGG | - | chr8_4:52131267-52131286 | None:intergenic | 25.0% |
! | TTCATTTGCAAATAATTGAC+TGG | + | chr8_4:52131290-52131309 | Msa1332230:intron | 25.0% |
! | ACAATTGATCAAATTTCTCT+TGG | - | chr8_4:52131398-52131417 | None:intergenic | 25.0% |
! | TGATCAATTGTATACTTGAT+TGG | + | chr8_4:52131407-52131426 | Msa1332230:intron | 25.0% |
!!! | TTTTTTACATGAAAGGGTTT+TGG | - | chr8_4:52131654-52131673 | None:intergenic | 25.0% |
!! | GTTTTTCTTGGAAAAAATAG+AGG | + | chr8_4:52132369-52132388 | Msa1332230:CDS | 25.0% |
!! | AGGTGATTAACAAAAGTTTT+TGG | + | chr8_4:52132389-52132408 | Msa1332230:intron | 25.0% |
!! | GGTGATTAACAAAAGTTTTT+GGG | + | chr8_4:52132390-52132409 | Msa1332230:intron | 25.0% |
! | TTCAATTAAAGAGTTTGATG+CGG | + | chr8_4:52132475-52132494 | Msa1332230:intron | 25.0% |
! | AAGAATATGGAACTATAAGT+TGG | + | chr8_4:52132640-52132659 | Msa1332230:intron | 25.0% |
! | TCATTCTAACTTAAAGCTTT+AGG | - | chr8_4:52132699-52132718 | None:intergenic | 25.0% |
! | TAGATCCTTTAACAATGTTT+AGG | - | chr8_4:52132830-52132849 | None:intergenic | 25.0% |
! | AAATAATATTTCTTGTTCGC+AGG | + | chr8_4:52132923-52132942 | Msa1332230:intron | 25.0% |
!!! | GTGTGACCTTTTTATTTTTT+TGG | + | chr8_4:52133023-52133042 | Msa1332230:three_prime_UTR | 25.0% |
!!! | TTTTGGTTTGAGTATGTATT+AGG | + | chr8_4:52133040-52133059 | Msa1332230:three_prime_UTR | 25.0% |
! | GGTAATTGATAAATTATGGT+CGG | - | chr8_4:52133151-52133170 | None:intergenic | 25.0% |
! | ACAGGGTAATTGATAAATTA+TGG | - | chr8_4:52133155-52133174 | None:intergenic | 25.0% |
!!! | GTATATTAGCTTTCTCTTTT+GGG | + | chr8_4:52133226-52133245 | Msa1332230:three_prime_UTR | 25.0% |
!! | AGTTGATGAAGAAGAGAAAA+GGG | - | chr8_4:52128632-52128651 | None:intergenic | 30.0% |
!! | AAGTTGATGAAGAAGAGAAA+AGG | - | chr8_4:52128633-52128652 | None:intergenic | 30.0% |
ATTAGGTTAACCTAATTTGG+TGG | - | chr8_4:52128857-52128876 | None:intergenic | 30.0% | |
! | AGCAGAAGTATAATGAGATT+AGG | + | chr8_4:52128971-52128990 | Msa1332230:CDS | 30.0% |
TCAAATCTATTCCTGATTTC+TGG | + | chr8_4:52129025-52129044 | Msa1332230:CDS | 30.0% | |
!! | TTGGTTTGTTTGTATGATTC+TGG | + | chr8_4:52129286-52129305 | Msa1332230:intron | 30.0% |
! | GTATGATTCTGGAAATTACT+CGG | + | chr8_4:52129297-52129316 | Msa1332230:intron | 30.0% |
! | AAAACGAAACAGAATGGTTT+TGG | + | chr8_4:52129371-52129390 | Msa1332230:intron | 30.0% |
TACTTTGATTCCATGGAAAA+TGG | - | chr8_4:52129402-52129421 | None:intergenic | 30.0% | |
GTGATATTACTTTGATTCCA+TGG | - | chr8_4:52129409-52129428 | None:intergenic | 30.0% | |
!!! | GGTTTTGTTCCTTTGATTAA+CGG | + | chr8_4:52129532-52129551 | Msa1332230:intron | 30.0% |
TCTTGAGGTTGAAGATAATA+AGG | + | chr8_4:52129620-52129639 | Msa1332230:CDS | 30.0% | |
GATAATAAGGATGTCAAATC+TGG | + | chr8_4:52129633-52129652 | Msa1332230:CDS | 30.0% | |
! | TTTTCAAATTTTCGGAAGAG+GGG | - | chr8_4:52129697-52129716 | None:intergenic | 30.0% |
! | GATTTTCAAATTTTCGGAAG+AGG | - | chr8_4:52129699-52129718 | None:intergenic | 30.0% |
GTCAGTAGAAAATCAACATT+TGG | - | chr8_4:52129793-52129812 | None:intergenic | 30.0% | |
TCTGAACATGAAATGATTAC+TGG | - | chr8_4:52129825-52129844 | None:intergenic | 30.0% | |
! | TTGCCTTCTTTCCATTTTAT+GGG | - | chr8_4:52129937-52129956 | None:intergenic | 30.0% |
GATTTGAAGAAGTTTCACAT+TGG | - | chr8_4:52130033-52130052 | None:intergenic | 30.0% | |
TTCTTCAAATCTACATGACA+TGG | + | chr8_4:52130042-52130061 | Msa1332230:intron | 30.0% | |
!! | CTTAAACTTGCTAAAAGTAG+AGG | + | chr8_4:52130070-52130089 | Msa1332230:intron | 30.0% |
TGAGTGATACTTTACTATTG+CGG | - | chr8_4:52130209-52130228 | None:intergenic | 30.0% | |
AAAGTTACCCCACAATTAAA+AGG | + | chr8_4:52130240-52130259 | Msa1332230:intron | 30.0% | |
!! | ATTACAGGCCTTTTAATTGT+GGG | - | chr8_4:52130251-52130270 | None:intergenic | 30.0% |
ACAGATTCATACAACATTAC+AGG | - | chr8_4:52130266-52130285 | None:intergenic | 30.0% | |
TTGTATGAATCTGTTCACTT+GGG | + | chr8_4:52130272-52130291 | Msa1332230:intron | 30.0% | |
ACATAATCCTGATACATGTA+GGG | + | chr8_4:52130600-52130619 | Msa1332230:intron | 30.0% | |
ACTAATATGCATCATGAACA+TGG | - | chr8_4:52130748-52130767 | None:intergenic | 30.0% | |
! | TATTAGTTTCCACTTGTTCT+TGG | + | chr8_4:52130761-52130780 | Msa1332230:intron | 30.0% |
GTCAATTAGGACATCAATAA+AGG | + | chr8_4:52130878-52130897 | Msa1332230:intron | 30.0% | |
AAACAAGCATCACTAATCAA+GGG | - | chr8_4:52130905-52130924 | None:intergenic | 30.0% | |
AAAACAAGCATCACTAATCA+AGG | - | chr8_4:52130906-52130925 | None:intergenic | 30.0% | |
! | TTGATTAGTGATGCTTGTTT+TGG | + | chr8_4:52130905-52130924 | Msa1332230:intron | 30.0% |
GAAGAAGAAAAAAGGAAAAG+AGG | - | chr8_4:52130946-52130965 | None:intergenic | 30.0% | |
TTTATTCCAATATGACCAAG+CGG | + | chr8_4:52130978-52130997 | Msa1332230:intron | 30.0% | |
CATAACACAATACAATACAG+AGG | + | chr8_4:52131034-52131053 | Msa1332230:intron | 30.0% | |
TATCTCCGTCAATTATTTGA+CGG | + | chr8_4:52131334-52131353 | Msa1332230:intron | 30.0% | |
TCAATTGTATACTTGATTGG+AGG | + | chr8_4:52131410-52131429 | Msa1332230:intron | 30.0% | |
!!! | TGGTACCAATTTTTTCCAAT+AGG | + | chr8_4:52131468-52131487 | Msa1332230:intron | 30.0% |
!! | CAAATATGAAGGTGGTTTTA+AGG | - | chr8_4:52131749-52131768 | None:intergenic | 30.0% |
TAAAACCACCTTCATATTTG+AGG | + | chr8_4:52131749-52131768 | Msa1332230:intron | 30.0% | |
TCATTAGCACAAGAAATCAA+AGG | - | chr8_4:52131883-52131902 | None:intergenic | 30.0% | |
ACACTGTTGAAATAAATGAG+TGG | - | chr8_4:52132170-52132189 | None:intergenic | 30.0% | |
AGCTACAGTTAGAAACATAA+CGG | - | chr8_4:52132274-52132293 | None:intergenic | 30.0% | |
GTAGCTGATTGTAATATAAC+AGG | + | chr8_4:52132288-52132307 | Msa1332230:intron | 30.0% | |
AAAAAGTTATGCATTCAGCA+TGG | - | chr8_4:52132521-52132540 | None:intergenic | 30.0% | |
TGAAAATTAAAGTTCGGTTC+AGG | - | chr8_4:52132582-52132601 | None:intergenic | 30.0% | |
CGCGAATGAAAATTAAAGTT+CGG | - | chr8_4:52132588-52132607 | None:intergenic | 30.0% | |
! | TTAATTTTCATTCGCGATCT+AGG | + | chr8_4:52132592-52132611 | Msa1332230:intron | 30.0% |
TGATAACCTCCAAAAAAACT+TGG | + | chr8_4:52132775-52132794 | Msa1332230:intron | 30.0% | |
!!! | GATAACTTGCCAAGTTTTTT+TGG | - | chr8_4:52132787-52132806 | None:intergenic | 30.0% |
ATTAATGACAAACACAGCTT+TGG | + | chr8_4:52132887-52132906 | Msa1332230:intron | 30.0% | |
AGGCAATTGAAAATGCATTA+TGG | + | chr8_4:52132998-52133017 | Msa1332230:exon | 30.0% | |
! | TTGAGTATGTATTAGGCTTT+TGG | + | chr8_4:52133047-52133066 | Msa1332230:three_prime_UTR | 30.0% |
! | TGAGTATGTATTAGGCTTTT+GGG | + | chr8_4:52133048-52133067 | Msa1332230:three_prime_UTR | 30.0% |
CTAGATGAAATTACTTGACA+GGG | - | chr8_4:52133172-52133191 | None:intergenic | 30.0% | |
ACTAGATGAAATTACTTGAC+AGG | - | chr8_4:52133173-52133192 | None:intergenic | 30.0% | |
TATCACTAAAATTGCACGAT+GGG | - | chr8_4:52133200-52133219 | None:intergenic | 30.0% | |
!! | TGCAATTTTAGTGATACTCA+TGG | + | chr8_4:52133204-52133223 | Msa1332230:three_prime_UTR | 30.0% |
!!! | GGTATATTAGCTTTCTCTTT+TGG | + | chr8_4:52133225-52133244 | Msa1332230:three_prime_UTR | 30.0% |
TTTATGCTAAGATACCCAAA+CGG | - | chr8_4:52133294-52133313 | None:intergenic | 30.0% | |
TTGGGTATCTTAGCATAAAA+AGG | + | chr8_4:52133295-52133314 | Msa1332230:three_prime_UTR | 30.0% | |
TCTAAATTCTAACAGAGGAT+GGG | - | chr8_4:52133437-52133456 | None:intergenic | 30.0% | |
ATCTAAATTCTAACAGAGGA+TGG | - | chr8_4:52133438-52133457 | None:intergenic | 30.0% | |
CAACATCTAAATTCTAACAG+AGG | - | chr8_4:52133442-52133461 | None:intergenic | 30.0% | |
! | ATCAACTTCTTCGGGATTTT+CGG | - | chr8_4:52128727-52128746 | None:intergenic | 35.0% |
! | AAAAAAACGGTACCTTTTCG+AGG | - | chr8_4:52128797-52128816 | None:intergenic | 35.0% |
TAATGATGAAGCGAGTGATA+AGG | + | chr8_4:52128936-52128955 | Msa1332230:CDS | 35.0% | |
GTATAATGAGATTAGGAAGC+CGG | + | chr8_4:52128978-52128997 | Msa1332230:CDS | 35.0% | |
! | GTTTTCCATGTTGTTACGTT+TGG | + | chr8_4:52129267-52129286 | Msa1332230:intron | 35.0% |
ACAAACCAAACGTAACAACA+TGG | - | chr8_4:52129275-52129294 | None:intergenic | 35.0% | |
!! | TTTGGTTTCACCATTTTCCA+TGG | + | chr8_4:52129389-52129408 | Msa1332230:intron | 35.0% |
AAACCTAGCAATTGTTCAGA+AGG | - | chr8_4:52129517-52129536 | None:intergenic | 35.0% | |
CTTTGATTAACGGTTCTGTT+GGG | + | chr8_4:52129542-52129561 | Msa1332230:intron | 35.0% | |
! | CAAGTATTTGAGTTCTCTTG+AGG | + | chr8_4:52129605-52129624 | Msa1332230:CDS | 35.0% |
! | TTTCAAATTTTCGGAAGAGG+GGG | - | chr8_4:52129696-52129715 | None:intergenic | 35.0% |
GAATCCTCAAAATAGGGATT+GGG | - | chr8_4:52129856-52129875 | None:intergenic | 35.0% | |
TGAATCCTCAAAATAGGGAT+TGG | - | chr8_4:52129857-52129876 | None:intergenic | 35.0% | |
! | TGCCTTCTTTCCATTTTATG+GGG | - | chr8_4:52129936-52129955 | None:intergenic | 35.0% |
! | CTTGCCTTCTTTCCATTTTA+TGG | - | chr8_4:52129938-52129957 | None:intergenic | 35.0% |
CATAAAATGGAAAGAAGGCA+AGG | + | chr8_4:52129936-52129955 | Msa1332230:CDS | 35.0% | |
! | AAAGTATCACTCAAGTTTGC+AGG | + | chr8_4:52130216-52130235 | Msa1332230:intron | 35.0% |
!! | TTACAGGCCTTTTAATTGTG+GGG | - | chr8_4:52130250-52130269 | None:intergenic | 35.0% |
!! | CATTACAGGCCTTTTAATTG+TGG | - | chr8_4:52130252-52130271 | None:intergenic | 35.0% |
GTTGTATGAATCTGTTCACT+TGG | + | chr8_4:52130271-52130290 | Msa1332230:intron | 35.0% | |
TGTATGAATCTGTTCACTTG+GGG | + | chr8_4:52130273-52130292 | Msa1332230:intron | 35.0% | |
AAGACCTCTACAAGAACAAA+TGG | + | chr8_4:52130374-52130393 | Msa1332230:intron | 35.0% | |
AGACCTCTACAAGAACAAAT+GGG | + | chr8_4:52130375-52130394 | Msa1332230:intron | 35.0% | |
GATAGTTTAAGGGAAACTGT+TGG | + | chr8_4:52130422-52130441 | Msa1332230:intron | 35.0% | |
TTGTTGAGTGATCCATATAG+TGG | + | chr8_4:52130501-52130520 | Msa1332230:intron | 35.0% | |
CACATAATCCTGATACATGT+AGG | + | chr8_4:52130599-52130618 | Msa1332230:intron | 35.0% | |
ATGAGAAGAAAGGGAACAAA+AGG | + | chr8_4:52130643-52130662 | Msa1332230:CDS | 35.0% | |
! | TTTGTTATCATGGACAAAGC+TGG | - | chr8_4:52130837-52130856 | None:intergenic | 35.0% |
!! | AACTCGTGAGTTTGTTATCA+TGG | - | chr8_4:52130847-52130866 | None:intergenic | 35.0% |
TTATAATCCTGCCGTCAATT+AGG | + | chr8_4:52130865-52130884 | Msa1332230:intron | 35.0% | |
! | ATCCCACAGTTTGATGATTA+CGG | + | chr8_4:52131089-52131108 | Msa1332230:intron | 35.0% |
ATCCGTAATCATCAAACTGT+GGG | - | chr8_4:52131094-52131113 | None:intergenic | 35.0% | |
TATCCGTAATCATCAAACTG+TGG | - | chr8_4:52131095-52131114 | None:intergenic | 35.0% | |
! | TAGTAATGGGAAAGTTGTTC+AGG | - | chr8_4:52131143-52131162 | None:intergenic | 35.0% |
TCCATAGCAACGATAGTAAT+GGG | - | chr8_4:52131156-52131175 | None:intergenic | 35.0% | |
TTCCATAGCAACGATAGTAA+TGG | - | chr8_4:52131157-52131176 | None:intergenic | 35.0% | |
GCGAAAGAATCATATTGTAG+CGG | + | chr8_4:52131201-52131220 | Msa1332230:intron | 35.0% | |
TGACGGAGATAATTCTTCAA+AGG | - | chr8_4:52131325-52131344 | None:intergenic | 35.0% | |
TGTATACTTGATTGGAGGTT+TGG | + | chr8_4:52131415-52131434 | Msa1332230:intron | 35.0% | |
GTATACTTGATTGGAGGTTT+GGG | + | chr8_4:52131416-52131435 | Msa1332230:intron | 35.0% | |
AGGGACCTATTGGAAAAAAT+TGG | - | chr8_4:52131476-52131495 | None:intergenic | 35.0% | |
!! | GTGAAAAGTATTGACCTTTC+AGG | + | chr8_4:52131580-52131599 | Msa1332230:intron | 35.0% |
! | TAAAGGCTTAAAGCTCCTTT+TGG | + | chr8_4:52131828-52131847 | Msa1332230:intron | 35.0% |
! | TTCAATGAAGCGTTTCCAAA+AGG | - | chr8_4:52131846-52131865 | None:intergenic | 35.0% |
GAAACGCTTCATTGAACAAA+TGG | + | chr8_4:52131850-52131869 | Msa1332230:intron | 35.0% | |
ATGAATGCAGTTTCCTTAGT+TGG | + | chr8_4:52131899-52131918 | Msa1332230:intron | 35.0% | |
AGAAACTACTTGAGAAGAAC+AGG | - | chr8_4:52131987-52132006 | None:intergenic | 35.0% | |
GCTGATTGTAATATAACAGG+AGG | + | chr8_4:52132291-52132310 | Msa1332230:intron | 35.0% | |
!! | AATGGAAGTTCCGTTTTTCT+TGG | + | chr8_4:52132357-52132376 | Msa1332230:CDS | 35.0% |
!!! | AACTTGCCAAGTTTTTTTGG+AGG | - | chr8_4:52132784-52132803 | None:intergenic | 35.0% |
GTATCACTAAAATTGCACGA+TGG | - | chr8_4:52133201-52133220 | None:intergenic | 35.0% | |
! | TTCCGACTATAGTTAACTTG+CGG | - | chr8_4:52133349-52133368 | None:intergenic | 35.0% |
CAAGTTAACTATAGTCGGAA+AGG | + | chr8_4:52133349-52133368 | Msa1332230:three_prime_UTR | 35.0% | |
! | AGCTTTATGCATAACTTTCC+TGG | + | chr8_4:52133372-52133391 | Msa1332230:three_prime_UTR | 35.0% |
CTAAATTCTAACAGAGGATG+GGG | - | chr8_4:52133436-52133455 | None:intergenic | 35.0% | |
TAGATGTTGATATTCGCCAT+CGG | + | chr8_4:52133453-52133472 | Msa1332230:three_prime_UTR | 35.0% | |
TGATGAAGAAGAGAAAAGGG+TGG | - | chr8_4:52128629-52128648 | None:intergenic | 40.0% | |
AGTTCAGCATCAACTTCTTC+GGG | - | chr8_4:52128735-52128754 | None:intergenic | 40.0% | |
GAGTTCAGCATCAACTTCTT+CGG | - | chr8_4:52128736-52128755 | None:intergenic | 40.0% | |
GATCTCTTGCAATTTCTCGA+TGG | - | chr8_4:52128766-52128785 | None:intergenic | 40.0% | |
ACAGCATTCAACCAGAAATC+AGG | - | chr8_4:52129039-52129058 | None:intergenic | 40.0% | |
CTCATTCAGTAGTTCACTGA+GGG | - | chr8_4:52129189-52129208 | None:intergenic | 40.0% | |
GTGGACAAAACGAAACAGAA+TGG | + | chr8_4:52129365-52129384 | Msa1332230:intron | 40.0% | |
CCAACAGAACCGTTAATCAA+AGG | - | chr8_4:52129544-52129563 | None:intergenic | 40.0% | |
CCTTTGATTAACGGTTCTGT+TGG | + | chr8_4:52129541-52129560 | Msa1332230:intron | 40.0% | |
AGAAGAAGGGCAACTTACAA+GGG | - | chr8_4:52129670-52129689 | None:intergenic | 40.0% | |
! | CAATCCCAATCCCTATTTTG+AGG | + | chr8_4:52129849-52129868 | Msa1332230:CDS | 40.0% |
! | ACTTTTACCTTCCGTGAAGA+AGG | + | chr8_4:52129889-52129908 | Msa1332230:CDS | 40.0% |
TCTCTGTTGTTCCTTCTTCA+CGG | - | chr8_4:52129903-52129922 | None:intergenic | 40.0% | |
ACCCCCATAAAATGGAAAGA+AGG | + | chr8_4:52129931-52129950 | Msa1332230:CDS | 40.0% | |
! | GCCTTCTTTCCATTTTATGG+GGG | - | chr8_4:52129935-52129954 | None:intergenic | 40.0% |
AATGGAAAGAAGGCAAGGTA+AGG | + | chr8_4:52129941-52129960 | Msa1332230:intron | 40.0% | |
ATGGAAAGAAGGCAAGGTAA+GGG | + | chr8_4:52129942-52129961 | Msa1332230:intron | 40.0% | |
TCGAACTTGATGAGATGCAT+AGG | + | chr8_4:52130108-52130127 | Msa1332230:intron | 40.0% | |
CGAACTTGATGAGATGCATA+GGG | + | chr8_4:52130109-52130128 | Msa1332230:intron | 40.0% | |
GAGATGCATAGGGAAAATAG+TGG | + | chr8_4:52130119-52130138 | Msa1332230:intron | 40.0% | |
GTATGAATCTGTTCACTTGG+GGG | + | chr8_4:52130274-52130293 | Msa1332230:intron | 40.0% | |
GACCTCTACAAGAACAAATG+GGG | + | chr8_4:52130376-52130395 | Msa1332230:intron | 40.0% | |
TCTACAAGAACAAATGGGGA+GGG | + | chr8_4:52130380-52130399 | Msa1332230:intron | 40.0% | |
! | AGGTCTTTTACCATGAGCTT+GGG | - | chr8_4:52130528-52130547 | None:intergenic | 40.0% |
! | AAGGTCTTTTACCATGAGCT+TGG | - | chr8_4:52130529-52130548 | None:intergenic | 40.0% |
TACATGTAGGGAATACCCAA+TGG | + | chr8_4:52130612-52130631 | Msa1332230:intron | 40.0% | |
TTCTCATGATTGTCGCCATT+GGG | - | chr8_4:52130630-52130649 | None:intergenic | 40.0% | |
GCGACAATCATGAGAAGAAA+GGG | + | chr8_4:52130634-52130653 | Msa1332230:CDS | 40.0% | |
ATATTTCCTTACCTTCCGCT+TGG | - | chr8_4:52130996-52131015 | None:intergenic | 40.0% | |
AGCGGAAGGTAAGGAAATAT+TGG | + | chr8_4:52130996-52131015 | Msa1332230:intron | 40.0% | |
GCGGAAGGTAAGGAAATATT+GGG | + | chr8_4:52130997-52131016 | Msa1332230:intron | 40.0% | |
!! | GAAAGTTGTTCAGGTTGTTG+AGG | - | chr8_4:52131134-52131153 | None:intergenic | 40.0% |
TCCCATTACTATCGTTGCTA+TGG | + | chr8_4:52131152-52131171 | Msa1332230:intron | 40.0% | |
TTTCGCTATCAGTGCAATAG+CGG | - | chr8_4:52131187-52131206 | None:intergenic | 40.0% | |
TCCGTCAATTATTTGACGGA+TGG | + | chr8_4:52131338-52131357 | Msa1332230:intron | 40.0% | |
GCCATCCGTCAAATAATTGA+CGG | - | chr8_4:52131342-52131361 | None:intergenic | 40.0% | |
TGAATCCACCCGTCAAATAT+GGG | - | chr8_4:52131365-52131384 | None:intergenic | 40.0% | |
TTGAATCCACCCGTCAAATA+TGG | - | chr8_4:52131366-52131385 | None:intergenic | 40.0% | |
! | TATTTGACGGGTGGATTCAA+TGG | + | chr8_4:52131366-52131385 | Msa1332230:intron | 40.0% |
!! | ATGGTGGATGTTTAAGAGTC+TGG | + | chr8_4:52131448-52131467 | Msa1332230:intron | 40.0% |
! | GCAAAGCACACAAGTTTTAC+TGG | - | chr8_4:52131500-52131519 | None:intergenic | 40.0% |
GAGACTGCTCTTGACAATAT+GGG | - | chr8_4:52131533-52131552 | None:intergenic | 40.0% | |
AGAGACTGCTCTTGACAATA+TGG | - | chr8_4:52131534-52131553 | None:intergenic | 40.0% | |
!! | TGGAAGAGTATCTTTATGCC+TGG | + | chr8_4:52131609-52131628 | Msa1332230:intron | 40.0% |
AGCAAGACAGAGAGTAAAGT+AGG | + | chr8_4:52131702-52131721 | Msa1332230:intron | 40.0% | |
TCTGTCCTCAAATATGAAGG+TGG | - | chr8_4:52131757-52131776 | None:intergenic | 40.0% | |
GCTTCTGTCCTCAAATATGA+AGG | - | chr8_4:52131760-52131779 | None:intergenic | 40.0% | |
CACAGTCACAAAACCAACTA+AGG | - | chr8_4:52131915-52131934 | None:intergenic | 40.0% | |
CTGTGAGCAGAAAGATGATA+TGG | + | chr8_4:52131930-52131949 | Msa1332230:CDS | 40.0% | |
ACACGTGGAAAACAAAGACA+GGG | - | chr8_4:52132022-52132041 | None:intergenic | 40.0% | |
ATTAGTCAAGTAGAGACACG+TGG | - | chr8_4:52132037-52132056 | None:intergenic | 40.0% | |
GCAGCTTGCAGAATTAATCA+AGG | + | chr8_4:52132127-52132146 | Msa1332230:intron | 40.0% | |
CTCATCATCAGCTTCATCAT+CGG | - | chr8_4:52132335-52132354 | None:intergenic | 40.0% | |
! | TGAAGCTGATGATGAGGTAA+TGG | + | chr8_4:52132339-52132358 | Msa1332230:CDS | 40.0% |
GAGTTAATGCCCTGAAAGAA+AGG | - | chr8_4:52133088-52133107 | None:intergenic | 40.0% | |
CATTAACTCATGTCAGCAAG+TGG | + | chr8_4:52133099-52133118 | Msa1332230:three_prime_UTR | 40.0% | |
TACTGCATTTACTAGCCGTT+TGG | + | chr8_4:52133276-52133295 | Msa1332230:three_prime_UTR | 40.0% | |
ACTGCATTTACTAGCCGTTT+GGG | + | chr8_4:52133277-52133296 | Msa1332230:three_prime_UTR | 40.0% | |
TCCCGCAAGTTAACTATAGT+CGG | + | chr8_4:52133344-52133363 | Msa1332230:three_prime_UTR | 40.0% | |
!! | TCCGACTATAGTTAACTTGC+GGG | - | chr8_4:52133348-52133367 | None:intergenic | 40.0% |
GCATTTATGTTTCAGTTGCC+AGG | - | chr8_4:52133393-52133412 | None:intergenic | 40.0% | |
AGATGTTGATATTCGCCATC+GGG | + | chr8_4:52133454-52133473 | Msa1332230:three_prime_UTR | 40.0% | |
!! | GAAAACGCGAAAGGGTGTTA+GGG | - | chr8_4:52128603-52128622 | None:intergenic | 45.0% |
!! | TGAAAACGCGAAAGGGTGTT+AGG | - | chr8_4:52128604-52128623 | None:intergenic | 45.0% |
GGTGGAATGAAAACGCGAAA+GGG | - | chr8_4:52128611-52128630 | None:intergenic | 45.0% | |
CTCTTCTTCATCAACTTCCG+CGG | + | chr8_4:52128636-52128655 | Msa1332230:five_prime_UTR | 45.0% | |
GTTCTGTCTCCAACCATCTT+CGG | - | chr8_4:52128687-52128706 | None:intergenic | 45.0% | |
TTCGGTGAGTTTCTGCTTCT+TGG | - | chr8_4:52128709-52128728 | None:intergenic | 45.0% | |
CTTGCAATTTCTCGATGGAG+AGG | - | chr8_4:52128761-52128780 | None:intergenic | 45.0% | |
GATCCAAGATGACCTCGAAA+AGG | + | chr8_4:52128782-52128801 | Msa1332230:CDS | 45.0% | |
!! | GTACCTTTTCGAGGTCATCT+TGG | - | chr8_4:52128788-52128807 | None:intergenic | 45.0% |
TCGTTCCGCTTATCGTAAAC+CGG | - | chr8_4:52129000-52129019 | None:intergenic | 45.0% | |
TTCAGTAGTTCACTGAGGGT+AGG | - | chr8_4:52129185-52129204 | None:intergenic | 45.0% | |
CCTCATTCAGTAGTTCACTG+AGG | - | chr8_4:52129190-52129209 | None:intergenic | 45.0% | |
CCTCAGTGAACTACTGAATG+AGG | + | chr8_4:52129187-52129206 | Msa1332230:CDS | 45.0% | |
AAATTACTCGGCGTGTTCTG+TGG | + | chr8_4:52129309-52129328 | Msa1332230:intron | 45.0% | |
! | TGTTTCGTTTTGTCCACGCT+GGG | - | chr8_4:52129362-52129381 | None:intergenic | 45.0% |
CTAGCAATTGTTCAGAAGGC+AGG | - | chr8_4:52129513-52129532 | None:intergenic | 45.0% | |
CTGCCTTCTGAACAATTGCT+AGG | + | chr8_4:52129511-52129530 | Msa1332230:intron | 45.0% | |
GAGAAGAAGGGCAACTTACA+AGG | - | chr8_4:52129671-52129690 | None:intergenic | 45.0% | |
TGTTGTTCCTTCTTCACGGA+AGG | - | chr8_4:52129899-52129918 | None:intergenic | 45.0% | |
TCACTGCTACCCCCATAAAA+TGG | + | chr8_4:52129923-52129942 | Msa1332230:CDS | 45.0% | |
CTCCCCATTTGTTCTTGTAG+AGG | - | chr8_4:52130381-52130400 | None:intergenic | 45.0% | |
CTCTACAAGAACAAATGGGG+AGG | + | chr8_4:52130379-52130398 | Msa1332230:intron | 45.0% | |
ATGAGCTTGGGTCCACTATA+TGG | - | chr8_4:52130516-52130535 | None:intergenic | 45.0% | |
!! | ATATAGTGGACCCAAGCTCA+TGG | + | chr8_4:52130515-52130534 | Msa1332230:intron | 45.0% |
GGGTATTCCCTACATGTATC+AGG | - | chr8_4:52130610-52130629 | None:intergenic | 45.0% | |
CTTCTCATGATTGTCGCCAT+TGG | - | chr8_4:52130631-52130650 | None:intergenic | 45.0% | |
GGCGACAATCATGAGAAGAA+AGG | + | chr8_4:52130633-52130652 | Msa1332230:CDS | 45.0% | |
AAAGGTCAGCCAAGAACAAG+TGG | - | chr8_4:52130773-52130792 | None:intergenic | 45.0% | |
TTGATGTCCTAATTGACGGC+AGG | - | chr8_4:52130875-52130894 | None:intergenic | 45.0% | |
TTCCAATATGACCAAGCGGA+AGG | + | chr8_4:52130982-52131001 | Msa1332230:intron | 45.0% | |
TACCTTCCGCTTGGTCATAT+TGG | - | chr8_4:52130987-52131006 | None:intergenic | 45.0% | |
ATATGACCAAGCGGAAGGTA+AGG | + | chr8_4:52130987-52131006 | Msa1332230:intron | 45.0% | |
!! | TTGTTCAGGTTGTTGAGGTC+TGG | - | chr8_4:52131129-52131148 | None:intergenic | 45.0% |
! | ATAGCGGAGCTATTGTGTAG+CGG | - | chr8_4:52131251-52131270 | None:intergenic | 45.0% |
GAATCCACCCGTCAAATATG+GGG | - | chr8_4:52131364-52131383 | None:intergenic | 45.0% | |
! | TTGATTGGAGGTTTGGGATC+AGG | + | chr8_4:52131422-52131441 | Msa1332230:intron | 45.0% |
! | TGATTGGAGGTTTGGGATCA+GGG | + | chr8_4:52131423-52131442 | Msa1332230:intron | 45.0% |
! | TTTTACTGGCAGGGACCTAT+TGG | - | chr8_4:52131486-52131505 | None:intergenic | 45.0% |
! | GCACACAAGTTTTACTGGCA+GGG | - | chr8_4:52131495-52131514 | None:intergenic | 45.0% |
! | AGCACACAAGTTTTACTGGC+AGG | - | chr8_4:52131496-52131515 | None:intergenic | 45.0% |
ATTGACCTTTCAGGAGTCGA+TGG | + | chr8_4:52131589-52131608 | Msa1332230:intron | 45.0% | |
! | AGAGTATCTTTATGCCTGGC+TGG | + | chr8_4:52131613-52131632 | Msa1332230:intron | 45.0% |
GACACGTGGAAAACAAAGAC+AGG | - | chr8_4:52132023-52132042 | None:intergenic | 45.0% | |
! | CGATGATGAAGCTGATGATG+AGG | + | chr8_4:52132333-52132352 | Msa1332230:CDS | 45.0% |
CTTCTAGCAGCGATTTCTGA+AGG | + | chr8_4:52132555-52132574 | Msa1332230:intron | 45.0% | |
TTGTTCGCAGGAAAAAGACG+AGG | + | chr8_4:52132935-52132954 | Msa1332230:intron | 45.0% | |
TCTGAAGAGGATGACGAAGA+GGG | + | chr8_4:52132963-52132982 | Msa1332230:CDS | 45.0% | |
AGACCATGGCCTTTCTTTCA+GGG | + | chr8_4:52133076-52133095 | Msa1332230:three_prime_UTR | 45.0% | |
!! | GACTATAGTTAACTTGCGGG+AGG | - | chr8_4:52133345-52133364 | None:intergenic | 45.0% |
GGGTGGAATGAAAACGCGAA+AGG | - | chr8_4:52128612-52128631 | None:intergenic | 50.0% | |
TGTGTGAGTGAAGATTGCCG+CGG | - | chr8_4:52128656-52128675 | None:intergenic | 50.0% | |
GGCAATCTTCACTCACACAG+AGG | + | chr8_4:52128657-52128676 | Msa1332230:five_prime_UTR | 50.0% | |
! | GGAAGCCGGTTTACGATAAG+CGG | + | chr8_4:52128992-52129011 | Msa1332230:CDS | 50.0% |
GTAGTTCACTGAGGGTAGGA+TGG | - | chr8_4:52129181-52129200 | None:intergenic | 50.0% | |
!!! | GTAGTAGTTTTGACCCAGCG+TGG | + | chr8_4:52129346-52129365 | Msa1332230:intron | 50.0% |
! | CTGTTTCGTTTTGTCCACGC+TGG | - | chr8_4:52129363-52129382 | None:intergenic | 50.0% |
GAAGAGGGGGAAGAGAAGAA+GGG | - | chr8_4:52129683-52129702 | None:intergenic | 50.0% | |
CAAGAACAAATGGGGAGGGT+TGG | + | chr8_4:52130384-52130403 | Msa1332230:intron | 50.0% | |
AAAGGCCTCCTGTTGATGTC+AGG | + | chr8_4:52130661-52130680 | Msa1332230:CDS | 50.0% | |
ACCAACCTGACATCAACAGG+AGG | - | chr8_4:52130669-52130688 | None:intergenic | 50.0% | |
GACACCAACCTGACATCAAC+AGG | - | chr8_4:52130672-52130691 | None:intergenic | 50.0% | |
CATGGACAAAGCTGGAGAGT+GGG | - | chr8_4:52130829-52130848 | None:intergenic | 50.0% | |
TCATGGACAAAGCTGGAGAG+TGG | - | chr8_4:52130830-52130849 | None:intergenic | 50.0% | |
! | GTTGAGGTCTGGAACGAACA+GGG | - | chr8_4:52131118-52131137 | None:intergenic | 50.0% |
! | TGTTGAGGTCTGGAACGAAC+AGG | - | chr8_4:52131119-52131138 | None:intergenic | 50.0% |
TAGCGGAGCTATTGTGTAGC+GGG | - | chr8_4:52131250-52131269 | None:intergenic | 50.0% | |
ACGGATGGCCCCATATTTGA+CGG | + | chr8_4:52131353-52131372 | Msa1332230:intron | 50.0% | |
! | GATTGGAGGTTTGGGATCAG+GGG | + | chr8_4:52131424-52131443 | Msa1332230:intron | 50.0% |
!! | CTCTTCCATCGACTCCTGAA+AGG | - | chr8_4:52131597-52131616 | None:intergenic | 50.0% |
TATGGCTGACATTCACGACG+AGG | + | chr8_4:52131948-52131967 | Msa1332230:CDS | 50.0% | |
TCATCGGCATCCTCTTCATC+AGG | - | chr8_4:52132319-52132338 | None:intergenic | 50.0% | |
TGCGGTGATACTGTGCATAC+TGG | + | chr8_4:52132493-52132512 | Msa1332230:intron | 50.0% | |
! | CTCTGAAGAGGATGACGAAG+AGG | + | chr8_4:52132962-52132981 | Msa1332230:CDS | 50.0% |
! | TGACGAAGAGGGTGATGATG+AGG | + | chr8_4:52132974-52132993 | Msa1332230:CDS | 50.0% |
! | GAAGAGGGTGATGATGAGGA+AGG | + | chr8_4:52132978-52132997 | Msa1332230:CDS | 50.0% |
CAGACCATGGCCTTTCTTTC+AGG | + | chr8_4:52133075-52133094 | Msa1332230:three_prime_UTR | 50.0% | |
ATGCCCTGAAAGAAAGGCCA+TGG | - | chr8_4:52133082-52133101 | None:intergenic | 50.0% | |
GAGCTACACAAGCCAGTTAG+TGG | + | chr8_4:52133121-52133140 | Msa1332230:three_prime_UTR | 50.0% | |
ATGGTCGGAGAACCACTAAC+TGG | - | chr8_4:52133136-52133155 | None:intergenic | 50.0% | |
ACACAGAGGCGAACCGAAGA+TGG | + | chr8_4:52128671-52128690 | Msa1332230:exon | 55.0% | |
AGAGGCGAACCGAAGATGGT+TGG | + | chr8_4:52128675-52128694 | Msa1332230:exon | 55.0% | |
GGAAGAGGGGGAAGAGAAGA+AGG | - | chr8_4:52129684-52129703 | None:intergenic | 55.0% | |
ACTTGGGGGTTGCACAAGAC+AGG | + | chr8_4:52130288-52130307 | Msa1332230:intron | 55.0% | |
CTTGGGGGTTGCACAAGACA+GGG | + | chr8_4:52130289-52130308 | Msa1332230:intron | 55.0% | |
GCCTCCTGTTGATGTCAGGT+TGG | + | chr8_4:52130665-52130684 | Msa1332230:intron | 55.0% | |
CGGATGGCCCCATATTTGAC+GGG | + | chr8_4:52131354-52131373 | Msa1332230:intron | 55.0% | |
ATGGCCCCATATTTGACGGG+TGG | + | chr8_4:52131357-52131376 | Msa1332230:intron | 55.0% | |
! | GAGGTTTGGGATCAGGGGTA+TGG | + | chr8_4:52131429-52131448 | Msa1332230:intron | 55.0% |
! | GTTTGGGATCAGGGGTATGG+TGG | + | chr8_4:52131432-52131451 | Msa1332230:intron | 55.0% |
AGAGTAATGCACAGCCAGCC+AGG | - | chr8_4:52131630-52131649 | None:intergenic | 55.0% | |
ACAGGAGGAGCCTGATGAAG+AGG | + | chr8_4:52132306-52132325 | Msa1332230:intron | 55.0% | |
! | AGACGAGGACGACTCTGAAG+AGG | + | chr8_4:52132950-52132969 | Msa1332230:CDS | 55.0% |
! | GCTTTTGGGCGTGCAGACCA+TGG | + | chr8_4:52133062-52133081 | Msa1332230:three_prime_UTR | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_4 | gene | 52128595 | 52133490 | 52128595 | ID=Msa1332230;Name=Msa1332230 |
chr8_4 | mRNA | 52128595 | 52133490 | 52128595 | ID=Msa1332230-mRNA-1;Parent=Msa1332230;Name=Msa1332230-mRNA-1;_AED=0.04;_eAED=0.04;_QI=95|1|1|1|1|1|10|483|265 |
chr8_4 | exon | 52128595 | 52128803 | 52128595 | ID=Msa1332230-mRNA-1:exon:15582;Parent=Msa1332230-mRNA-1 |
chr8_4 | exon | 52128934 | 52129056 | 52128934 | ID=Msa1332230-mRNA-1:exon:15583;Parent=Msa1332230-mRNA-1 |
chr8_4 | exon | 52129170 | 52129220 | 52129170 | ID=Msa1332230-mRNA-1:exon:15584;Parent=Msa1332230-mRNA-1 |
chr8_4 | exon | 52129600 | 52129671 | 52129600 | ID=Msa1332230-mRNA-1:exon:15585;Parent=Msa1332230-mRNA-1 |
chr8_4 | exon | 52129844 | 52129957 | 52129844 | ID=Msa1332230-mRNA-1:exon:15586;Parent=Msa1332230-mRNA-1 |
chr8_4 | exon | 52130621 | 52130682 | 52130621 | ID=Msa1332230-mRNA-1:exon:15587;Parent=Msa1332230-mRNA-1 |
chr8_4 | exon | 52131909 | 52131969 | 52131909 | ID=Msa1332230-mRNA-1:exon:15588;Parent=Msa1332230-mRNA-1 |
chr8_4 | exon | 52132131 | 52132187 | 52132131 | ID=Msa1332230-mRNA-1:exon:15589;Parent=Msa1332230-mRNA-1 |
chr8_4 | exon | 52132310 | 52132390 | 52132310 | ID=Msa1332230-mRNA-1:exon:15590;Parent=Msa1332230-mRNA-1 |
chr8_4 | exon | 52132945 | 52133490 | 52132945 | ID=Msa1332230-mRNA-1:exon:15591;Parent=Msa1332230-mRNA-1 |
chr8_4 | five_prime_UTR | 52128595 | 52128689 | 52128595 | ID=Msa1332230-mRNA-1:five_prime_utr;Parent=Msa1332230-mRNA-1 |
chr8_4 | CDS | 52128690 | 52128803 | 52128690 | ID=Msa1332230-mRNA-1:cds;Parent=Msa1332230-mRNA-1 |
chr8_4 | CDS | 52128934 | 52129056 | 52128934 | ID=Msa1332230-mRNA-1:cds;Parent=Msa1332230-mRNA-1 |
chr8_4 | CDS | 52129170 | 52129220 | 52129170 | ID=Msa1332230-mRNA-1:cds;Parent=Msa1332230-mRNA-1 |
chr8_4 | CDS | 52129600 | 52129671 | 52129600 | ID=Msa1332230-mRNA-1:cds;Parent=Msa1332230-mRNA-1 |
chr8_4 | CDS | 52129844 | 52129957 | 52129844 | ID=Msa1332230-mRNA-1:cds;Parent=Msa1332230-mRNA-1 |
chr8_4 | CDS | 52130621 | 52130682 | 52130621 | ID=Msa1332230-mRNA-1:cds;Parent=Msa1332230-mRNA-1 |
chr8_4 | CDS | 52131909 | 52131969 | 52131909 | ID=Msa1332230-mRNA-1:cds;Parent=Msa1332230-mRNA-1 |
chr8_4 | CDS | 52132131 | 52132187 | 52132131 | ID=Msa1332230-mRNA-1:cds;Parent=Msa1332230-mRNA-1 |
chr8_4 | CDS | 52132310 | 52132390 | 52132310 | ID=Msa1332230-mRNA-1:cds;Parent=Msa1332230-mRNA-1 |
chr8_4 | CDS | 52132945 | 52133007 | 52132945 | ID=Msa1332230-mRNA-1:cds;Parent=Msa1332230-mRNA-1 |
chr8_4 | three_prime_UTR | 52133008 | 52133490 | 52133008 | ID=Msa1332230-mRNA-1:three_prime_utr;Parent=Msa1332230-mRNA-1 |
Gene Sequence |
Protein sequence |