AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0021310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0021310 MtrunA17_Chr1g0201271 94.394 660 8 3 9 667 1 632 0.0 1268
Msa0021310 MtrunA17_Chr6g0466801 64.220 654 200 5 15 663 2 626 0.0 793
Msa0021310 MtrunA17_Chr4g0054951 39.347 643 304 14 15 654 2 561 2.39e-148 442
Msa0021310 MtrunA17_Chr5g0400311 40.390 666 328 17 15 657 2 621 6.95e-145 435
Msa0021310 MtrunA17_Chr4g0054941 38.450 658 278 13 19 651 3 558 9.16e-143 428
Msa0021310 MtrunA17_Chr1g0185281 50.890 281 132 3 390 664 272 552 9.43e-94 300
Msa0021310 MtrunA17_Chr1g0185281 32.597 181 101 4 26 199 13 179 3.73e-20 94.7
Msa0021310 MtrunA17_Chr5g0394901 55.172 261 110 4 403 657 351 610 1.44e-93 302
Msa0021310 MtrunA17_Chr5g0394901 33.908 174 102 2 30 199 17 181 1.79e-19 92.8
Msa0021310 MtrunA17_Chr7g0260081 51.119 268 125 3 404 665 286 553 3.66e-91 293
Msa0021310 MtrunA17_Chr7g0260081 35.632 174 104 2 26 199 14 179 3.65e-22 100
Msa0021310 MtrunA17_Chr1g0205121 52.256 266 120 4 404 663 313 577 1.06e-90 293
Msa0021310 MtrunA17_Chr1g0205121 32.584 178 105 3 26 199 13 179 5.13e-20 94.4
Msa0021310 MtrunA17_Chr8g0355021 55.085 236 99 3 406 634 227 462 4.82e-85 275
Msa0021310 MtrunA17_Chr8g0355021 41.111 90 53 0 92 181 42 131 3.63e-16 81.6
Msa0021310 MtrunA17_Chr7g0263111 52.263 243 104 5 409 647 174 408 3.45e-81 264
Msa0021310 MtrunA17_Chr7g0263111 47.826 92 47 1 104 194 81 172 1.42e-18 89.0
Msa0021310 MtrunA17_Chr8g0382571 48.473 262 128 4 403 657 210 471 1.48e-78 258
Msa0021310 MtrunA17_Chr8g0382571 54.167 72 33 0 110 181 37 108 1.88e-17 85.9
Msa0021310 MtrunA17_Chr6g0479511 50.000 230 111 2 409 634 155 384 1.35e-77 253
Msa0021310 MtrunA17_Chr6g0479511 45.161 93 48 2 113 204 47 137 4.21e-17 84.0
Msa0021310 MtrunA17_Chr1g0165011 52.586 232 104 2 409 634 180 411 4.43e-77 253
Msa0021310 MtrunA17_Chr1g0165011 37.705 122 65 4 66 182 20 135 1.02e-13 73.9
Msa0021310 MtrunA17_Chr8g0375751 48.864 264 127 4 402 660 142 402 1.47e-75 248
Msa0021310 MtrunA17_Chr8g0375751 42.529 87 49 1 97 182 45 131 3.95e-13 72.0
Msa0021310 MtrunA17_Chr6g0452181 49.174 242 113 6 403 634 160 401 1.29e-67 228
Msa0021310 MtrunA17_Chr6g0452181 49.351 77 37 1 107 181 51 127 1.94e-15 79.3
Msa0021310 MtrunA17_Chr1g0189231 31.982 222 122 6 404 600 606 823 3.66e-31 130
Msa0021310 MtrunA17_Chr6g0488541 28.682 258 120 5 405 600 642 897 5.81e-30 126
Msa0021310 MtrunA17_Chr1g0154491 31.020 245 146 12 394 626 94 327 1.94e-18 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0021310 AT1G71710.2 55.000 680 241 14 15 658 2 652 0.0 687
Msa0021310 AT1G71710.1 55.000 680 241 14 15 658 11 661 0.0 687
Msa0021310 AT1G34120.1 48.602 644 229 11 23 652 27 582 0.0 554
Msa0021310 AT1G34120.2 49.686 636 238 12 23 652 27 586 0.0 554
Msa0021310 AT1G34120.3 49.528 636 238 13 23 652 27 585 0.0 547
Msa0021310 AT1G34120.5 50.507 493 175 9 165 652 3 431 8.99e-153 449
Msa0021310 AT1G34120.4 45.438 537 192 10 23 546 27 475 4.33e-134 402
Msa0021310 AT4G18010.1 54.440 259 115 2 394 649 377 635 2.06e-96 310
Msa0021310 AT2G32010.2 55.385 260 109 4 404 657 324 582 5.67e-94 302
Msa0021310 AT2G32010.2 48.837 86 44 0 114 199 93 178 2.96e-19 92.4
Msa0021310 AT2G32010.1 55.385 260 109 4 404 657 324 582 5.67e-94 302
Msa0021310 AT2G32010.1 48.837 86 44 0 114 199 93 178 2.96e-19 92.4
Msa0021310 AT2G32010.4 55.385 260 109 4 404 657 324 582 5.67e-94 302
Msa0021310 AT2G32010.4 48.837 86 44 0 114 199 93 178 2.96e-19 92.4
Msa0021310 AT2G32010.3 55.385 260 109 4 404 657 324 582 5.67e-94 302
Msa0021310 AT2G32010.3 48.837 86 44 0 114 199 93 178 2.96e-19 92.4
Msa0021310 AT3G63240.2 52.830 265 119 3 399 657 271 535 1.72e-93 300
Msa0021310 AT3G63240.2 37.349 166 85 4 20 181 7 157 8.57e-20 94.0
Msa0021310 AT3G63240.1 52.830 265 119 3 399 657 271 535 1.72e-93 300
Msa0021310 AT3G63240.1 37.349 166 85 4 20 181 7 157 8.57e-20 94.0
Msa0021310 AT1G05470.2 53.462 260 114 4 404 657 347 605 1.16e-91 297
Msa0021310 AT1G05470.2 33.742 163 101 2 19 181 6 161 9.41e-21 97.4
Msa0021310 AT1G05470.1 53.462 260 114 4 404 657 347 605 1.16e-91 297
Msa0021310 AT1G05470.1 33.742 163 101 2 19 181 6 161 9.41e-21 97.4
Msa0021310 AT5G65090.2 50.189 265 126 3 393 651 186 450 2.05e-83 271
Msa0021310 AT5G65090.2 49.315 73 37 0 110 182 8 80 2.79e-17 85.5
Msa0021310 AT5G65090.3 50.189 265 126 3 393 651 249 513 7.49e-83 271
Msa0021310 AT5G65090.3 49.315 73 37 0 110 182 71 143 3.70e-17 85.5
Msa0021310 AT5G65090.1 50.189 265 126 3 393 651 249 513 7.49e-83 271
Msa0021310 AT5G65090.1 49.315 73 37 0 110 182 71 143 3.70e-17 85.5
Msa0021310 AT5G04980.4 48.828 256 124 3 394 642 145 400 1.28e-80 261
Msa0021310 AT2G37440.2 54.237 236 102 4 405 636 112 345 1.36e-80 261
Msa0021310 AT2G37440.2 42.857 112 36 3 116 204 3 109 3.64e-14 75.5
Msa0021310 AT2G37440.1 54.237 236 102 4 405 636 193 426 3.57e-80 263
Msa0021310 AT2G37440.1 48.571 105 51 2 108 209 79 183 6.42e-19 90.9
Msa0021310 AT2G37440.3 54.237 236 102 4 405 636 193 426 3.57e-80 263
Msa0021310 AT2G37440.3 48.571 105 51 2 108 209 79 183 6.42e-19 90.9
Msa0021310 AT5G04980.1 48.828 256 124 3 394 642 180 435 6.23e-80 261
Msa0021310 AT5G04980.1 47.826 69 36 0 110 178 7 75 4.50e-14 75.5
Msa0021310 AT5G04980.3 48.828 256 124 3 394 642 180 435 6.23e-80 261
Msa0021310 AT5G04980.3 47.826 69 36 0 110 178 7 75 4.50e-14 75.5
Msa0021310 AT5G04980.2 48.828 256 124 3 394 642 209 464 8.05e-80 261
Msa0021310 AT5G04980.2 47.826 69 36 0 110 178 36 104 4.46e-14 75.5
Msa0021310 AT2G01900.1 51.220 246 112 3 409 648 155 398 1.18e-76 251
Msa0021310 AT2G01900.1 37.500 120 67 3 77 195 29 141 1.60e-14 76.6
Msa0021310 AT2G01900.3 51.220 246 112 3 409 648 163 406 1.33e-76 251
Msa0021310 AT2G01900.3 37.500 120 67 3 77 195 37 149 1.36e-14 77.0
Msa0021310 AT2G01900.2 50.204 245 107 3 409 648 155 389 6.21e-74 244
Msa0021310 AT2G01900.2 37.500 120 67 3 77 195 29 141 1.81e-14 76.3
Msa0021310 AT4G18010.2 53.659 205 92 2 394 595 377 581 1.48e-73 248
Msa0021310 AT1G65580.2 31.618 272 141 8 404 632 351 620 3.63e-35 143
Msa0021310 AT1G65580.1 31.618 272 141 8 404 632 617 886 5.19e-35 142
Msa0021310 AT2G31830.2 29.766 299 149 8 403 656 658 940 1.41e-33 138
Msa0021310 AT2G31830.1 29.766 299 149 8 403 656 658 940 1.62e-33 138
Msa0021310 AT2G31830.3 32.510 243 132 6 403 617 658 896 1.29e-32 135
Msa0021310 AT1G05630.2 31.416 226 125 5 403 600 649 872 2.51e-32 134
Msa0021310 AT2G43900.1 30.973 226 126 5 403 600 655 878 3.26e-32 134
Msa0021310 AT1G05630.3 31.416 226 125 5 403 600 649 872 3.76e-32 134
Msa0021310 AT2G43900.2 30.973 226 126 5 403 600 655 878 3.81e-32 134
Msa0021310 AT1G47510.4 35.714 210 110 9 426 626 70 263 3.91e-24 103
Msa0021310 AT1G47510.1 35.714 210 110 9 426 626 132 325 1.42e-23 102
Msa0021310 AT1G05630.1 46.067 89 46 2 514 600 818 906 5.30e-17 85.9
Msa0021310 AT1G47510.2 43.590 117 55 5 518 626 149 262 2.70e-15 77.0

Find 152 sgRNAs with CRISPR-Local

Find 653 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTTTGTTTATAGAATTTA+TGG 0.063950 1_1:+37761968 Msa0021310:intron
GGTGAAGAACATAATTTATT+TGG 0.142900 1_1:+37763615 Msa0021310:CDS
TGAATTAATCTCGTACTTAT+AGG 0.195385 1_1:-37765506 None:intergenic
TCATTGTCTGAATCAGTTTC+AGG 0.208520 1_1:-37762090 None:intergenic
AAAATGTTACTCGTGTTTAA+AGG 0.232239 1_1:-37763384 None:intergenic
AACTGTTGGTGTTGGTGTTA+TGG 0.238835 1_1:+37764235 Msa0021310:CDS
AGAATTTCTTCTTCTATATC+TGG 0.254254 1_1:-37763549 None:intergenic
TCATGATAAGAGCATATAAT+TGG 0.254277 1_1:-37766477 None:intergenic
GCAAATGGCTTAACATTAAA+AGG 0.260784 1_1:+37762007 Msa0021310:CDS
AGTGCTCGCTGTAGCTTCTT+TGG 0.278921 1_1:-37765935 None:intergenic
ACTGTTGGTGTTGGTGTTAT+GGG 0.280728 1_1:+37764236 Msa0021310:CDS
TTTGATTTAATTTACAACTA+TGG 0.282676 1_1:-37766421 None:intergenic
TCTGATGGTTTAAACTTTGA+TGG 0.282944 1_1:-37763519 None:intergenic
TTATTTGCAGAAGAATAATT+TGG 0.290513 1_1:+37764899 Msa0021310:intron
AACAGATGCTATAGATTTAC+TGG 0.299403 1_1:+37764070 Msa0021310:CDS
GGTGTACGCCTCGCAACCTT+TGG 0.301674 1_1:-37765550 None:intergenic
GGGGAAGCCGGTCACGGATT+AGG 0.306749 1_1:+37762381 Msa0021310:CDS
CTCATGATCCAAGATACTTT+TGG 0.312592 1_1:-37764589 None:intergenic
CAGAATTTCTCCCAGGCTTA+AGG 0.327355 1_1:+37762737 Msa0021310:intron
ACCCGTGACTGCCACATATA+TGG 0.328230 1_1:+37765892 Msa0021310:CDS
CTTATCAAAGAAGGTTGAAT+AGG 0.329509 1_1:+37763736 Msa0021310:CDS
AAGCTATCTAGAATGATTAA+TGG 0.329819 1_1:+37763825 Msa0021310:CDS
GGGAAGCCGGTCACGGATTA+GGG 0.338322 1_1:+37762382 Msa0021310:CDS
TGGAATTTAGCAACATAATC+TGG 0.339847 1_1:+37766013 Msa0021310:exon
GGTGAGGAGATTCATCCTTT+AGG 0.342847 1_1:+37763594 Msa0021310:CDS
TTAAAACCTAGTTGATAGAT+TGG 0.348812 1_1:+37766332 Msa0021310:three_prime_UTR
TGGACTTCCCAAAAGTATCT+TGG 0.350599 1_1:+37764581 Msa0021310:CDS
AAGATATGTAGTGGATTAGT+AGG 0.370085 1_1:-37754908 None:intergenic
GTTGGTGTTATGGGCTATAT+TGG 0.372990 1_1:+37764245 Msa0021310:CDS
TTCAGTGCTTCATCTATGAT+TGG 0.386944 1_1:-37763651 None:intergenic
GAGTACCTGTTGTTGCTTGT+TGG 0.389738 1_1:-37761720 None:intergenic
CACAGCCAACAAGCAACAAC+AGG 0.389941 1_1:+37761715 Msa0021310:CDS
CAACAATGGTCATGCGCAAA+TGG 0.392807 1_1:+37761992 Msa0021310:CDS
ACTCTACATGTAGTATGAAT+TGG 0.393078 1_1:+37754842 Msa0021310:five_prime_UTR
AGCACTGAATATTAGTTTGA+AGG 0.396504 1_1:+37763665 Msa0021310:CDS
CCTGCTGATATCTATGTCCT+TGG 0.397019 1_1:+37762990 Msa0021310:CDS
ATGTGGCAGTCACGGGTCTA+TGG 0.397224 1_1:-37765886 None:intergenic
TCATGACAAGTTTCGGCACT+TGG 0.403840 1_1:+37765993 Msa0021310:CDS
TTAGAAAGCGATAGTGATAT+TGG 0.406935 1_1:+37763573 Msa0021310:CDS
GAAGAAGTCATGACAAGTTT+CGG 0.412405 1_1:+37765986 Msa0021310:CDS
ATGACTTTGATATTGATGAT+TGG 0.413325 1_1:+37762952 Msa0021310:CDS
TTGTAAATTAAATCAAATAT+AGG 0.414138 1_1:+37766427 Msa0021310:three_prime_UTR
GTCTTATTAAACGATTTAAC+CGG 0.414616 1_1:-37764011 None:intergenic
AGCTATCTAGAATGATTAAT+GGG 0.418456 1_1:+37763826 Msa0021310:CDS
CGTATTCTATCACATGGAAA+TGG 0.418767 1_1:+37765818 Msa0021310:CDS
CACATATATGGCAGAGGTTG+AGG 0.419355 1_1:+37765904 Msa0021310:CDS
ATCAGTTATCTTATCAAAGA+AGG 0.426818 1_1:+37763727 Msa0021310:CDS
GTGTACGCCTCGCAACCTTT+GGG 0.433772 1_1:-37765549 None:intergenic
GTTAGTGGGACTGAAAGAAT+TGG 0.433816 1_1:+37763918 Msa0021310:CDS
CTGACGAAGGAACATATATC+TGG 0.435370 1_1:+37754981 Msa0021310:five_prime_UTR
TTTGTTGCCTCAGAAAGTAT+TGG 0.436972 1_1:+37763968 Msa0021310:CDS
TCTTTGTTTATAGAATTTAT+GGG 0.438492 1_1:+37761969 Msa0021310:intron
TGGAAGTATGATCTCTCTTA+AGG 0.438808 1_1:+37756823 Msa0021310:exon
TACTCGTCCTGTACCGAAAT+GGG 0.439941 1_1:+37763419 Msa0021310:CDS
TGCAGAAGAATAATTTGGTT+CGG 0.440082 1_1:+37764904 Msa0021310:intron
TTCTTCAATCCCTTTCCTCA+TGG 0.444295 1_1:+37754807 Msa0021310:five_prime_UTR
ATATTATTTACTGAATTTGA+AGG 0.445218 1_1:+37766154 Msa0021310:three_prime_UTR
AACAAATGTAATGGTGGCTC+TGG 0.447550 1_1:-37763951 None:intergenic
TCATCAATATCAAAGTCATT+AGG 0.451910 1_1:-37762948 None:intergenic
TTTCTATTAGAGTATGTGTT+GGG 0.452675 1_1:+37762898 Msa0021310:intron
CCACCTTACGGCAGGTGAAA+AGG 0.453682 1_1:+37764482 Msa0021310:CDS
ATACTCGTCCTGTACCGAAA+TGG 0.454190 1_1:+37763418 Msa0021310:CDS
AATTGGAAGAATTGTAATTG+AGG 0.457576 1_1:-37766460 None:intergenic
AAATTATGTTCTTCACCTAA+AGG 0.459993 1_1:-37763609 None:intergenic
TGCCATATATGTGGCAGTCA+CGG 0.462589 1_1:-37765894 None:intergenic
TATAAATAGCCATGAGGAAA+GGG 0.464206 1_1:-37754816 None:intergenic
GATTAGTAGGTATACTGATC+AGG 0.468889 1_1:-37754895 None:intergenic
GGCAAAAGTCATTGACTGTA+AGG 0.470476 1_1:+37762761 Msa0021310:CDS
ATCTTGAAGCTTTGATGAAG+AGG 0.470630 1_1:+37764102 Msa0021310:CDS
AGCATTTCGTTTGATTTCAT+CGG 0.472148 1_1:-37764508 None:intergenic
CTTTATATGCACCCACCTTA+CGG 0.476641 1_1:+37764470 Msa0021310:CDS
GGTTTAAACTTTGATGGAGA+TGG 0.477628 1_1:-37763513 None:intergenic
GACTGTATGATTTGTACATA+TGG 0.478230 1_1:+37766292 Msa0021310:three_prime_UTR
ATATCTGGTGCATCATCTGA+TGG 0.479222 1_1:-37763534 None:intergenic
GCCATATATGTGGCAGTCAC+GGG 0.485409 1_1:-37765893 None:intergenic
ATCTCGTACTTATAGGTTGG+TGG 0.485679 1_1:-37765499 None:intergenic
GATTAGTAAGCTATCTAGAA+TGG 0.486586 1_1:+37763896 Msa0021310:CDS
TATCATATGGCAAGCTGATA+CGG 0.487049 1_1:-37764939 None:intergenic
TGTTGCAACCGTTGCTTGCA+AGG 0.487428 1_1:-37754957 None:intergenic
TTAACCGGTTTAAAAGAAGT+TGG 0.498071 1_1:-37763996 None:intergenic
CTGAAAGAATTGGTTTGAGC+TGG 0.499133 1_1:+37763928 Msa0021310:CDS
CTGCTGATATCTATGTCCTT+GGG 0.499146 1_1:+37762991 Msa0021310:CDS
AACATGAAGGTTTCAACTGT+TGG 0.500406 1_1:+37764221 Msa0021310:CDS
CAGGAGAGAGGATGAAGCTC+CGG 0.509164 1_1:+37762406 Msa0021310:CDS
TGAGATTACTGAGTTACAAA+AGG 0.512142 1_1:+37765843 Msa0021310:CDS
TCCTGTCCCTAATCCGTGAC+CGG 0.513210 1_1:-37762388 None:intergenic
AAGGTTTCAACTGTTGGTGT+TGG 0.514208 1_1:+37764227 Msa0021310:CDS
TTAATCTCGTACTTATAGGT+TGG 0.517794 1_1:-37765502 None:intergenic
TTCTGAGGCAACAAATGTAA+TGG 0.523939 1_1:-37763960 None:intergenic
TGAACTGCAGAATTTCTCCC+AGG 0.530982 1_1:+37762730 Msa0021310:intron
CCAAGGACATAGATATCAGC+AGG 0.535441 1_1:-37762990 None:intergenic
GCCGGTCACGGATTAGGGAC+AGG 0.536950 1_1:+37762387 Msa0021310:CDS
TTAGAGTATGTGTTGGGACA+TGG 0.539774 1_1:+37762904 Msa0021310:intron
ATTAATTCAGACAAGTACAT+TGG 0.541947 1_1:+37765520 Msa0021310:CDS
TGTTCTGAATATGTTTCCGC+AGG 0.543544 1_1:-37764202 None:intergenic
CAGAGTGGGGAAGCCGGTCA+CGG 0.545381 1_1:+37762375 Msa0021310:intron
TCTACGAAGAAGAGTGGCTA+TGG 0.548822 1_1:+37756803 Msa0021310:intron
ATATAAATAGCCATGAGGAA+AGG 0.550987 1_1:-37754817 None:intergenic
TCATCACGGTATGGGTTCGA+AGG 0.552651 1_1:+37764177 Msa0021310:CDS
TTTAGCAACATAATCTGGAC+AGG 0.552955 1_1:+37766018 Msa0021310:exon
CTTGTGAAAGAATTAGAGAA+AGG 0.553223 1_1:+37765439 Msa0021310:CDS
TGTGTTGGGACATGGAATGT+TGG 0.555711 1_1:+37762912 Msa0021310:CDS
TCTCGTACTTATAGGTTGGT+GGG 0.555840 1_1:-37765498 None:intergenic
TGGAGATGGAGGATCACTAA+AGG 0.558217 1_1:-37763499 None:intergenic
GAAACATATTCAGAACATGA+AGG 0.559314 1_1:+37764208 Msa0021310:CDS
CTCAACCTCTGCCATATATG+TGG 0.563035 1_1:-37765903 None:intergenic
ATAGAATTTATGGGCAACAA+TGG 0.563404 1_1:+37761978 Msa0021310:intron
AAGCTATCTAGAATGGTTAG+TGG 0.565033 1_1:+37763903 Msa0021310:CDS
ATATGCACCCACCTTACGGC+AGG 0.566040 1_1:+37764474 Msa0021310:CDS
GAAACTGATTCAGACAATGA+AGG 0.567354 1_1:+37762093 Msa0021310:CDS
ATGGCTTAACATTAAAAGGA+AGG 0.567804 1_1:+37762011 Msa0021310:CDS
TTAAACTTTGATGGAGATGG+AGG 0.571133 1_1:-37763510 None:intergenic
TAGTCACCATCTGATTCAGC+CGG 0.571583 1_1:-37762425 None:intergenic
AGCTATCTAGAATGGTTAGT+GGG 0.573263 1_1:+37763904 Msa0021310:CDS
GGTCTCTCCAATACTTTCTG+AGG 0.576164 1_1:-37763975 None:intergenic
TGCGATCGTATTCTATCACA+TGG 0.579104 1_1:+37765812 Msa0021310:CDS
TTTCCGCGAGGAAGATTCAT+CGG 0.585056 1_1:+37763767 Msa0021310:CDS
ATTGTGCAGAGTGGGGAAGC+CGG 0.586219 1_1:+37762369 Msa0021310:intron
GTGGTATTTGAATCATCACT+TGG 0.586257 1_1:-37766397 None:intergenic
TCAATATCAAAGTCATTAGG+TGG 0.586310 1_1:-37762945 None:intergenic
GACTGCCACATATATGGCAG+AGG 0.590077 1_1:+37765898 Msa0021310:CDS
GTCTCAATATATAAACAAGA+AGG 0.590829 1_1:+37762783 Msa0021310:CDS
ACAAAGCCAATCTATCAACT+AGG 0.591192 1_1:-37766338 None:intergenic
TCAAGTGTCCTTGCAAGCAA+CGG 0.593561 1_1:+37754949 Msa0021310:five_prime_UTR
GAAGCTCCGGCTGAATCAGA+TGG 0.599862 1_1:+37762419 Msa0021310:CDS
CAAACTAAAGCATACCATGC+TGG 0.608342 1_1:-37765571 None:intergenic
ATAGTGAGCAAGCAGATGGT+TGG 0.609242 1_1:+37764149 Msa0021310:CDS
GTTGGGACATGGAATGTTGG+AGG 0.610467 1_1:+37762915 Msa0021310:CDS
AAGCGATAGTGATATTGGTG+AGG 0.614723 1_1:+37763578 Msa0021310:CDS
AATTTCTCCCAGGCTTAAGG+AGG 0.618284 1_1:+37762740 Msa0021310:CDS
ACGGATTAGGGACAGGAGAG+AGG 0.618825 1_1:+37762394 Msa0021310:CDS
TATGGGCTATATTGGTAACA+AGG 0.624421 1_1:+37764253 Msa0021310:CDS
TCATCACTTGGAAATTCACA+TGG 0.626583 1_1:-37766385 None:intergenic
TTCAGACAAGTACATTGGAG+AGG 0.633311 1_1:+37765525 Msa0021310:CDS
GAGAGGACCCAAAGGTTGCG+AGG 0.634911 1_1:+37765542 Msa0021310:CDS
TGAGGCAACAAATGTAATGG+TGG 0.637973 1_1:-37763957 None:intergenic
TTTAATTTACAACTATGGAG+TGG 0.639270 1_1:-37766416 None:intergenic
TATAACAAGAAGATATGTAG+TGG 0.643028 1_1:-37754917 None:intergenic
GGACATAGATATCAGCAGGA+TGG 0.644979 1_1:-37762986 None:intergenic
TTGCGAGGCGTACACCAGCA+TGG 0.653553 1_1:+37765557 Msa0021310:CDS
AAGTATGATCTCTCTTAAGG+AGG 0.673903 1_1:+37756826 Msa0021310:exon
TATGGGTTCGAAGGAGCCTG+CGG 0.674551 1_1:+37764186 Msa0021310:CDS
GTACATTGGAGAGGACCCAA+AGG 0.674845 1_1:+37765534 Msa0021310:CDS
ACACTTTCTCTCAGTCTCAG+TGG 0.676726 1_1:-37754865 None:intergenic
GAAGATAGTGAGCAAGCAGA+TGG 0.678985 1_1:+37764145 Msa0021310:CDS
ATGTTCGTGAAATACATCAG+AGG 0.682749 1_1:+37764532 Msa0021310:CDS
ACGGTTGCAACAGCTGACGA+AGG 0.696375 1_1:+37754968 Msa0021310:five_prime_UTR
AAAATTGGTTGAGAGAGACC+AGG 0.701785 1_1:+37764996 Msa0021310:CDS
ATATAAACAAGAAGGAACTG+AGG 0.702635 1_1:+37762791 Msa0021310:CDS
AGTTAATATAAATAGCCATG+AGG 0.717619 1_1:-37754822 None:intergenic
TTTCCGATGAATCTTCCTCG+CGG 0.752096 1_1:-37763770 None:intergenic
TAGGCTAAATCATTTCCGCG+AGG 0.776950 1_1:+37763755 Msa0021310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATATATAATTTTTTAA+CGG + chr1_1:37757872-37757891 Msa0021310:intron 0.0%
!!! TTTTTTAATTTTCTTTTTGA+AGG - chr1_1:37755296-37755315 None:intergenic 10.0%
!! AAAATTAAAAAAAGAGAATA+AGG + chr1_1:37755304-37755323 Msa0021310:intron 10.0%
!! AAATTAAAAAAAGAGAATAA+GGG + chr1_1:37755305-37755324 Msa0021310:intron 10.0%
!! ATAATTTCTCTTAATTTATA+TGG - chr1_1:37755585-37755604 None:intergenic 10.0%
!!! ATGATATTATATTTGTTATA+TGG + chr1_1:37755962-37755981 Msa0021310:intron 10.0%
!! TAATTCATATAAATTATGAA+CGG - chr1_1:37756110-37756129 None:intergenic 10.0%
!!! ATATACATAAGTATTTTTTT+AGG + chr1_1:37757044-37757063 Msa0021310:intron 10.0%
!!! TATACATAAGTATTTTTTTA+GGG + chr1_1:37757045-37757064 Msa0021310:intron 10.0%
!! AACACTAATTTATTTATATT+TGG - chr1_1:37757161-37757180 None:intergenic 10.0%
!! TATTTAAAAAAAAATCTTAC+TGG - chr1_1:37758653-37758672 None:intergenic 10.0%
!! TAAAAAAATTTAGATATGTT+TGG + chr1_1:37759509-37759528 Msa0021310:intron 10.0%
!! TATTGTAATTAATAAAACAT+TGG + chr1_1:37762138-37762157 Msa0021310:intron 10.0%
!!! TAATCACTTTTTTTTTTTTA+TGG + chr1_1:37763100-37763119 Msa0021310:intron 10.0%
!! TTGTAAATTAAATCAAATAT+AGG + chr1_1:37766427-37766446 Msa0021310:three_prime_UTR 10.0%
!! ATTAATTAATTATAGAGAAG+AGG - chr1_1:37755067-37755086 None:intergenic 15.0%
!! ATGTTAAGAATATAAAACAA+TGG - chr1_1:37755523-37755542 None:intergenic 15.0%
!!! GTTTTTTTTTTGACAAAATA+TGG - chr1_1:37755553-37755572 None:intergenic 15.0%
!!! TTAAGTTTAATTTGTCTATT+TGG - chr1_1:37755612-37755631 None:intergenic 15.0%
!!! CTTTTTTTACAAATAGATTT+GGG - chr1_1:37755722-37755741 None:intergenic 15.0%
!!! TCTTTTTTTACAAATAGATT+TGG - chr1_1:37755723-37755742 None:intergenic 15.0%
!!! TATTATATTTGTTATATGGT+TGG + chr1_1:37755966-37755985 Msa0021310:intron 15.0%
!!! TTTTATTTATAGTTTCCTTT+AGG + chr1_1:37756469-37756488 Msa0021310:intron 15.0%
!! TTTATTTATAGTTTCCTTTA+GGG + chr1_1:37756470-37756489 Msa0021310:intron 15.0%
!! TTTATACAATAATTCATGAT+CGG + chr1_1:37756605-37756624 Msa0021310:intron 15.0%
!!! GTTTGTGAAATTTTAAAATT+TGG + chr1_1:37756771-37756790 Msa0021310:intron 15.0%
!! AACACATTAAATTTACTAAA+TGG - chr1_1:37756975-37756994 None:intergenic 15.0%
!! AATTTAATGTGTTAAATTAG+TGG + chr1_1:37756982-37757001 Msa0021310:intron 15.0%
!! TGAAAAAAAATAGAGAATTT+AGG - chr1_1:37757100-37757119 None:intergenic 15.0%
!! TAATTCTCATGTTTAATAAA+CGG - chr1_1:37757788-37757807 None:intergenic 15.0%
!!! AGAGTTTTTTTTTGTAATTA+TGG - chr1_1:37758034-37758053 None:intergenic 15.0%
!! AAAGTCAAACTATAATATAA+AGG + chr1_1:37758256-37758275 Msa0021310:intron 15.0%
!! AAGTCAAACTATAATATAAA+GGG + chr1_1:37758257-37758276 Msa0021310:intron 15.0%
!!! AAGGTTTTTTTTTTCAATTT+GGG - chr1_1:37758519-37758538 None:intergenic 15.0%
!! TTGATCACTTATTTATATTA+GGG - chr1_1:37759380-37759399 None:intergenic 15.0%
!! TTTGATCACTTATTTATATT+AGG - chr1_1:37759381-37759400 None:intergenic 15.0%
!! CAATTCATAAATATTAGTTA+AGG - chr1_1:37759753-37759772 None:intergenic 15.0%
!!! TATTATGATAATGTACAAAA+AGG + chr1_1:37760615-37760634 Msa0021310:intron 15.0%
!! AATAAAAAAATTAAGACTGT+TGG + chr1_1:37760745-37760764 Msa0021310:intron 15.0%
!!! TAAGTTTAGATTTTCTATAA+TGG - chr1_1:37761429-37761448 None:intergenic 15.0%
!! ATTAATTTAAATTCCATACA+AGG + chr1_1:37761477-37761496 Msa0021310:intron 15.0%
!! ATTTCTTTATAAATTCTAGT+CGG + chr1_1:37761832-37761851 Msa0021310:intron 15.0%
!!! TCTTTGTTTATAGAATTTAT+GGG + chr1_1:37761969-37761988 Msa0021310:intron 15.0%
!!! CATTTTTCGATTTAAATTTA+GGG - chr1_1:37762617-37762636 None:intergenic 15.0%
!! TATTAAAAGTGATTTCAAAA+TGG - chr1_1:37763068-37763087 None:intergenic 15.0%
!! TAAATTAACATATTTGAATG+TGG - chr1_1:37764634-37764653 None:intergenic 15.0%
!!! TTACCTTAATTTTAATCAAA+AGG - chr1_1:37764685-37764704 None:intergenic 15.0%
!! TTCTAATTTAATCATATAGA+AGG - chr1_1:37764769-37764788 None:intergenic 15.0%
!! TTATGAGTATGATAAAAAAA+TGG - chr1_1:37765657-37765676 None:intergenic 15.0%
!! ATATTATTTACTGAATTTGA+AGG + chr1_1:37766154-37766173 Msa0021310:three_prime_UTR 15.0%
!!! TTTGATTTAATTTACAACTA+TGG - chr1_1:37766424-37766443 None:intergenic 15.0%
!! CCATCTTAAACATAAATAAA+GGG - chr1_1:37755183-37755202 None:intergenic 20.0%
!! ACCATCTTAAACATAAATAA+AGG - chr1_1:37755184-37755203 None:intergenic 20.0%
!! AGATCTTAACCATAAATAAA+GGG - chr1_1:37755256-37755275 None:intergenic 20.0%
!! TAGATCTTAACCATAAATAA+AGG - chr1_1:37755257-37755276 None:intergenic 20.0%
!! TTAAGATCTAAATAGAGTAA+GGG + chr1_1:37755267-37755286 Msa0021310:intron 20.0%
!!! ATGTCATTTTTTCACTTTAT+AGG - chr1_1:37755473-37755492 None:intergenic 20.0%
!! TCTAGATTGGATAATTAATA+AGG - chr1_1:37755637-37755656 None:intergenic 20.0%
!!! TTTGGGATATTTTCATAATT+GGG - chr1_1:37755705-37755724 None:intergenic 20.0%
!!! ATTTGGGATATTTTCATAAT+TGG - chr1_1:37755706-37755725 None:intergenic 20.0%
!! AATCCCATATATAATTATGA+AGG + chr1_1:37755777-37755796 Msa0021310:intron 20.0%
!! ACTCCTTCATAATTATATAT+GGG - chr1_1:37755783-37755802 None:intergenic 20.0%
!! TACTCCTTCATAATTATATA+TGG - chr1_1:37755784-37755803 None:intergenic 20.0%
!!! AATTAGCTTAAGGTTATAAT+TGG - chr1_1:37755866-37755885 None:intergenic 20.0%
!! AATTAACGCAATAAGAATAA+GGG + chr1_1:37756125-37756144 Msa0021310:intron 20.0%
!! ATACTGAAAGACTTAATTAA+TGG + chr1_1:37756245-37756264 Msa0021310:intron 20.0%
!! ATGAAACATGTATATCATTA+TGG - chr1_1:37756719-37756738 None:intergenic 20.0%
!! AATATTCACATCTTTAATGT+CGG - chr1_1:37757228-37757247 None:intergenic 20.0%
!! AATTATAACAACATTCACAA+TGG + chr1_1:37757803-37757822 Msa0021310:intron 20.0%
!! TTAACTGATTAAACTTTACA+GGG - chr1_1:37758360-37758379 None:intergenic 20.0%
!! TTTAACTGATTAAACTTTAC+AGG - chr1_1:37758361-37758380 None:intergenic 20.0%
!!! GAAGGTTTTTTTTTTCAATT+TGG - chr1_1:37758520-37758539 None:intergenic 20.0%
!!! AATTGATTTCTTGTTTGTAT+TGG - chr1_1:37758613-37758632 None:intergenic 20.0%
!! AAAAAAAAAGGATTAACGAT+TGG + chr1_1:37759302-37759321 Msa0021310:intron 20.0%
!! ATAAATAAGTGATCAAATTG+AGG + chr1_1:37759384-37759403 Msa0021310:intron 20.0%
!!! AATCTTTTTTTATATCTTGC+CGG - chr1_1:37759589-37759608 None:intergenic 20.0%
!! TGATAAAATATAAGTCAAGT+GGG - chr1_1:37759849-37759868 None:intergenic 20.0%
!! ATGATAAAATATAAGTCAAG+TGG - chr1_1:37759850-37759869 None:intergenic 20.0%
!!! ACTTGACTTATATTTTATCA+TGG + chr1_1:37759849-37759868 Msa0021310:intron 20.0%
!! TTTATAGACAAATACGTAAT+TGG - chr1_1:37760458-37760477 None:intergenic 20.0%
!! TCTTCAATGAGAAAAATATT+AGG - chr1_1:37760511-37760530 None:intergenic 20.0%
!! AATGAAACATAGAAGAAATA+TGG - chr1_1:37760806-37760825 None:intergenic 20.0%
!! TCATATTAAAGCCATTTAAT+TGG + chr1_1:37761239-37761258 Msa0021310:intron 20.0%
!!! ATCAAAGAAGTATAGTAATT+TGG + chr1_1:37761276-37761295 Msa0021310:intron 20.0%
!!! TGTATTTTATTATATCTGCT+AGG + chr1_1:37761378-37761397 Msa0021310:intron 20.0%
!!! GTCTTTGTTTATAGAATTTA+TGG + chr1_1:37761968-37761987 Msa0021310:intron 20.0%
!!! CCATTTTTCGATTTAAATTT+AGG - chr1_1:37762618-37762637 None:intergenic 20.0%
!! CCTAAATTTAAATCGAAAAA+TGG + chr1_1:37762615-37762634 Msa0021310:intron 20.0%
!!! AAAGTGTTTTTATATACACT+TGG + chr1_1:37763292-37763311 Msa0021310:intron 20.0%
!! ATCAGAAAGTGAATAAAAAT+GGG - chr1_1:37764559-37764578 None:intergenic 20.0%
!! AATCAGAAAGTGAATAAAAA+TGG - chr1_1:37764560-37764579 None:intergenic 20.0%
!!! TTTTATTCACTTTCTGATTT+TGG + chr1_1:37764561-37764580 Msa0021310:CDS 20.0%
!!! ATGCCTTTTGATTAAAATTA+AGG + chr1_1:37764679-37764698 Msa0021310:intron 20.0%
!! TTATTTGCAGAAGAATAATT+TGG + chr1_1:37764899-37764918 Msa0021310:intron 20.0%
!! TCATGAAATCAAAATGAATA+AGG - chr1_1:37765365-37765384 None:intergenic 20.0%
!!! ATTTTGAACTCAAGTTAAAA+GGG + chr1_1:37765390-37765409 Msa0021310:intron 20.0%
! AGTTAATATAAATAGCCATG+AGG - chr1_1:37754825-37754844 None:intergenic 25.0%
! TATAACAAGAAGATATGTAG+TGG - chr1_1:37754920-37754939 None:intergenic 25.0%
!! CCCTTTATTTATGTTTAAGA+TGG + chr1_1:37755180-37755199 Msa0021310:intron 25.0%
!!! TTTTAAAGTTCCTCTTATAC+TGG - chr1_1:37755210-37755229 None:intergenic 25.0%
!! AGGAACTTTAAAAAGAGTAA+GGG + chr1_1:37755217-37755236 Msa0021310:intron 25.0%
! CCATAAATAAAGGGAAATAA+AGG - chr1_1:37755247-37755266 None:intergenic 25.0%
!! CCTTTATTTCCCTTTATTTA+TGG + chr1_1:37755244-37755263 Msa0021310:intron 25.0%
! GTTAAGATCTAAATAGAGTA+AGG + chr1_1:37755266-37755285 Msa0021310:intron 25.0%
! CCAACAAAATAACATTATGA+TGG - chr1_1:37755892-37755911 None:intergenic 25.0%
!!! CCATCATAATGTTATTTTGT+TGG + chr1_1:37755889-37755908 Msa0021310:intron 25.0%
! GAATTAACGCAATAAGAATA+AGG + chr1_1:37756124-37756143 Msa0021310:intron 25.0%
!!! TACTAGATTTTTGTTGTTGA+CGG + chr1_1:37756309-37756328 Msa0021310:intron 25.0%
! GAAGTTAAACCGATAAAATA+AGG + chr1_1:37756356-37756375 Msa0021310:intron 25.0%
!!! ATCTCGATTCCTTATTTTAT+CGG - chr1_1:37756368-37756387 None:intergenic 25.0%
! AAATAAGGAATCGAGATAAA+AGG + chr1_1:37756371-37756390 Msa0021310:intron 25.0%
! TTCGTTACGAGATTTATAAT+TGG + chr1_1:37756445-37756464 Msa0021310:intron 25.0%
!! TAGCCATGTTGTTTATTTAA+TGG - chr1_1:37756558-37756577 None:intergenic 25.0%
! CGAGATGTCTATATTTAATT+TGG - chr1_1:37756752-37756771 None:intergenic 25.0%
! CTCATGTATGTGTTAAATTA+TGG + chr1_1:37757015-37757034 Msa0021310:intron 25.0%
! GGAAATTACTATACATAAGT+TGG + chr1_1:37757066-37757085 Msa0021310:intron 25.0%
! ATATTTCTTTACGTCTTACA+TGG + chr1_1:37757243-37757262 Msa0021310:intron 25.0%
! CAGCTCATCTAAATTAATAT+TGG - chr1_1:37757496-37757515 None:intergenic 25.0%
!! TAGCTGATTTATATTGTGTT+CGG + chr1_1:37757540-37757559 Msa0021310:intron 25.0%
!!! ATGACATGTCGATTTTTATT+TGG + chr1_1:37757665-37757684 Msa0021310:intron 25.0%
!!! TGACATGTCGATTTTTATTT+GGG + chr1_1:37757666-37757685 Msa0021310:intron 25.0%
!!! TGATATTTTTAGACAACACA+AGG - chr1_1:37757742-37757761 None:intergenic 25.0%
! GGACTCTAAATATCATAAAT+TGG - chr1_1:37757767-37757786 None:intergenic 25.0%
! AACATTCATTATCTTCAACT+AGG + chr1_1:37757906-37757925 Msa0021310:intron 25.0%
! ACATTCATTATCTTCAACTA+GGG + chr1_1:37757907-37757926 Msa0021310:intron 25.0%
!! AAAAAAAAAGGATTAGCGAT+TGG - chr1_1:37758335-37758354 None:intergenic 25.0%
! TAACTGATTAAACTTTACAG+GGG - chr1_1:37758359-37758378 None:intergenic 25.0%
! CATTCCAATTTCAATTTCAT+GGG - chr1_1:37758764-37758783 None:intergenic 25.0%
! TCATTCCAATTTCAATTTCA+TGG - chr1_1:37758765-37758784 None:intergenic 25.0%
!!! ATGCACTAGTTTAAAGTTTT+TGG + chr1_1:37759475-37759494 Msa0021310:intron 25.0%
!! AAATTTAGATATGTTTGGTG+TGG + chr1_1:37759514-37759533 Msa0021310:intron 25.0%
! AAAAAATTTGCGTTGAAAAG+TGG - chr1_1:37759720-37759739 None:intergenic 25.0%
! ACATTAGAAAGAGAAAAAGA+AGG + chr1_1:37760006-37760025 Msa0021310:intron 25.0%
! ATACTGAAATGACAAAGAAA+AGG - chr1_1:37760277-37760296 None:intergenic 25.0%
! TTGTTCAACAATCAACAATA+TGG + chr1_1:37760303-37760322 Msa0021310:intron 25.0%
!! ATTTTTCTCATTGAAGATGT+TGG + chr1_1:37760514-37760533 Msa0021310:intron 25.0%
!! TTTTTCTCATTGAAGATGTT+GGG + chr1_1:37760515-37760534 Msa0021310:intron 25.0%
! TATGGACATAATTCAATGTT+CGG + chr1_1:37760556-37760575 Msa0021310:intron 25.0%
!!! CAAAAAGGTACTTTATTGTA+TGG + chr1_1:37760630-37760649 Msa0021310:intron 25.0%
! AAATATGGACAAATTAAGGT+CGG - chr1_1:37760791-37760810 None:intergenic 25.0%
! GAAGAAATATGGACAAATTA+AGG - chr1_1:37760795-37760814 None:intergenic 25.0%
!! ATGGAGTATTACCAATTATA+AGG - chr1_1:37761201-37761220 None:intergenic 25.0%
!!! ATGATTAGTCTACTAACATA+TGG - chr1_1:37761220-37761239 None:intergenic 25.0%
! TTTAGTGCAAACCAATTAAA+TGG - chr1_1:37761253-37761272 None:intergenic 25.0%
!! AAAGAAGTATAGTAATTTGG+AGG + chr1_1:37761279-37761298 Msa0021310:intron 25.0%
! TTCACATGCAAATATTTGAA+TGG - chr1_1:37761405-37761424 None:intergenic 25.0%
! ATTCCATACAAGGAAAAAAA+AGG + chr1_1:37761487-37761506 Msa0021310:intron 25.0%
! TTTGTTTGCATCTTCAAATA+CGG + chr1_1:37761545-37761564 Msa0021310:intron 25.0%
!!! CTTATTTTTATACTGGATAC+CGG + chr1_1:37761766-37761785 Msa0021310:intron 25.0%
! ACCTTATCTATAATCTATGT+GGG + chr1_1:37761855-37761874 Msa0021310:intron 25.0%
! AGACTATTCATTTGAAGATT+TGG + chr1_1:37762192-37762211 Msa0021310:intron 25.0%
! ATTTGAAGATTTGGAAATTG+AGG + chr1_1:37762201-37762220 Msa0021310:intron 25.0%
!! TGATCTGTCTCAATTTTATT+TGG + chr1_1:37762342-37762361 Msa0021310:intron 25.0%
!!! GATCTGTCTCAATTTTATTT+GGG + chr1_1:37762343-37762362 Msa0021310:intron 25.0%
! GTCTCAATATATAAACAAGA+AGG + chr1_1:37762783-37762802 Msa0021310:CDS 25.0%
!! TTTTCTATTAGAGTATGTGT+TGG + chr1_1:37762897-37762916 Msa0021310:intron 25.0%
! TTTCTATTAGAGTATGTGTT+GGG + chr1_1:37762898-37762917 Msa0021310:intron 25.0%
! TCATCAATATCAAAGTCATT+AGG - chr1_1:37762951-37762970 None:intergenic 25.0%
!! ATGACTTTGATATTGATGAT+TGG + chr1_1:37762952-37762971 Msa0021310:CDS 25.0%
! TGCATATACACTCAAATATA+AGG + chr1_1:37763042-37763061 Msa0021310:intron 25.0%
! AAAATGTTACTCGTGTTTAA+AGG - chr1_1:37763387-37763406 None:intergenic 25.0%
!! CTAAAGGATTTTATCTTTGA+AGG - chr1_1:37763486-37763505 None:intergenic 25.0%
! AGAATTTCTTCTTCTATATC+TGG - chr1_1:37763552-37763571 None:intergenic 25.0%
! AAATTATGTTCTTCACCTAA+AGG - chr1_1:37763612-37763631 None:intergenic 25.0%
! GGTGAAGAACATAATTTATT+TGG + chr1_1:37763615-37763634 Msa0021310:CDS 25.0%
! ATCAGTTATCTTATCAAAGA+AGG + chr1_1:37763727-37763746 Msa0021310:CDS 25.0%
!! AAGCTATCTAGAATGATTAA+TGG + chr1_1:37763825-37763844 Msa0021310:CDS 25.0%
!! AGCTATCTAGAATGATTAAT+GGG + chr1_1:37763826-37763845 Msa0021310:CDS 25.0%
!! GTCTTATTAAACGATTTAAC+CGG - chr1_1:37764014-37764033 None:intergenic 25.0%
!!! TTTTGATTTGAAAGAATCAC+AGG - chr1_1:37764051-37764070 None:intergenic 25.0%
! AACAATGTCTTGAATTTACA+TGG + chr1_1:37764713-37764732 Msa0021310:intron 25.0%
!!! AGATCTCTTGTTTTATCATA+TGG - chr1_1:37764955-37764974 None:intergenic 25.0%
!! ATCTTATCTCAAAAAAGCAT+TGG + chr1_1:37764971-37764990 Msa0021310:CDS 25.0%
!!! AAAAAAGCATTGGTCAAAAT+TGG + chr1_1:37764981-37765000 Msa0021310:CDS 25.0%
!!! TATCAAGTTGATACATCTAA+TGG - chr1_1:37765034-37765053 None:intergenic 25.0%
!!! TTATTGATGTCTTATTTCTG+AGG + chr1_1:37765104-37765123 Msa0021310:intron 25.0%
! ACGGAACATATATTTCTTAA+TGG - chr1_1:37765145-37765164 None:intergenic 25.0%
! CGATTATCTATGTTACAAAA+TGG - chr1_1:37765308-37765327 None:intergenic 25.0%
! AACATAGATAATCGTGTTTA+AGG + chr1_1:37765314-37765333 Msa0021310:intron 25.0%
! ACATAGATAATCGTGTTTAA+GGG + chr1_1:37765315-37765334 Msa0021310:intron 25.0%
!! GATTTTGAACTCAAGTTAAA+AGG + chr1_1:37765389-37765408 Msa0021310:intron 25.0%
! TGAATTAATCTCGTACTTAT+AGG - chr1_1:37765509-37765528 None:intergenic 25.0%
! ATTAATTCAGACAAGTACAT+TGG + chr1_1:37765520-37765539 Msa0021310:CDS 25.0%
!! TCATTTTACTAAGAACAGTT+TGG - chr1_1:37765681-37765700 None:intergenic 25.0%
! AATGTTTGCAATTACCTTAT+AGG + chr1_1:37765789-37765808 Msa0021310:intron 25.0%
!! ACATATGGTATTTTATGAAC+AGG + chr1_1:37766307-37766326 Msa0021310:three_prime_UTR 25.0%
!!! TTAAAACCTAGTTGATAGAT+TGG + chr1_1:37766332-37766351 Msa0021310:three_prime_UTR 25.0%
!! TTTAATTTACAACTATGGAG+TGG - chr1_1:37766419-37766438 None:intergenic 25.0%
! AATTGGAAGAATTGTAATTG+AGG - chr1_1:37766463-37766482 None:intergenic 25.0%
TATAAATAGCCATGAGGAAA+GGG - chr1_1:37754819-37754838 None:intergenic 30.0%
ATATAAATAGCCATGAGGAA+AGG - chr1_1:37754820-37754839 None:intergenic 30.0%
ACTCTACATGTAGTATGAAT+TGG + chr1_1:37754842-37754861 Msa0021310:five_prime_UTR 30.0%
!! AAGATATGTAGTGGATTAGT+AGG - chr1_1:37754911-37754930 None:intergenic 30.0%
AGAAGAGGAGAAATAGAAAA+AGG - chr1_1:37755052-37755071 None:intergenic 30.0%
! TTTCTTGTCTTATTGAGAAG+AGG - chr1_1:37755135-37755154 None:intergenic 30.0%
! GAGGAACTTTAAAAAGAGTA+AGG + chr1_1:37755216-37755235 Msa0021310:intron 30.0%
AAACCTTCTCTCAATATTTG+AGG + chr1_1:37755331-37755350 Msa0021310:intron 30.0%
AACCTTCTCTCAATATTTGA+GGG + chr1_1:37755332-37755351 Msa0021310:intron 30.0%
TGAATATGCTAACAAACACT+TGG + chr1_1:37755375-37755394 Msa0021310:intron 30.0%
! TAGAGTTTTCTCATCTAGAT+TGG - chr1_1:37755650-37755669 None:intergenic 30.0%
GGGTTATACTTACAAATTGT+TGG - chr1_1:37755685-37755704 None:intergenic 30.0%
AGCTTAAGGTTATAATTGGA+AGG - chr1_1:37755862-37755881 None:intergenic 30.0%
! ATGATGGTCAAATTAGCTTA+AGG - chr1_1:37755876-37755895 None:intergenic 30.0%
AACGTTGCTGTAAATATAAC+TGG + chr1_1:37756161-37756180 Msa0021310:intron 30.0%
! AGTCTTTCAGTATCCTTTTA+GGG - chr1_1:37756238-37756257 None:intergenic 30.0%
! AAGTCTTTCAGTATCCTTTT+AGG - chr1_1:37756239-37756258 None:intergenic 30.0%
!! TCGAGATAAAAGGTACTATT+TGG + chr1_1:37756381-37756400 Msa0021310:intron 30.0%
!!! TATTTGGTTTTGTCTATCTC+AGG + chr1_1:37756397-37756416 Msa0021310:intron 30.0%
!!! ATTTGGTTTTGTCTATCTCA+GGG + chr1_1:37756398-37756417 Msa0021310:intron 30.0%
TATTTCCACTCATAAAGTTG+AGG - chr1_1:37756498-37756517 None:intergenic 30.0%
TGAGTGGAAATATGTTTAAG+TGG + chr1_1:37756506-37756525 Msa0021310:intron 30.0%
GCTCCATTAAATAAACAACA+TGG + chr1_1:37756552-37756571 Msa0021310:intron 30.0%
AACAACATGGCTACTATAAA+AGG + chr1_1:37756565-37756584 Msa0021310:intron 30.0%
AAATTGCTATGACGTATTGA+AGG + chr1_1:37756657-37756676 Msa0021310:intron 30.0%
AGCTTTCTCAATACCAAATA+GGG + chr1_1:37757318-37757337 Msa0021310:intron 30.0%
TATTAGCTGTACAATCCATT+CGG + chr1_1:37757401-37757420 Msa0021310:intron 30.0%
!!! ATGGTGTTGACTTAGAATTT+TGG + chr1_1:37757433-37757452 Msa0021310:intron 30.0%
!!! TGGTGTTGACTTAGAATTTT+GGG + chr1_1:37757434-37757453 Msa0021310:intron 30.0%
!!! GACATGTCGATTTTTATTTG+GGG + chr1_1:37757667-37757686 Msa0021310:intron 30.0%
TCAAACATGAATGCATATGA+CGG - chr1_1:37757714-37757733 None:intergenic 30.0%
CATTCATTATCTTCAACTAG+GGG + chr1_1:37757908-37757927 Msa0021310:intron 30.0%
! GTTGACCAAATTTGATAACA+TGG - chr1_1:37758413-37758432 None:intergenic 30.0%
! TGATTTCTTGTTTGTATTGG+TGG - chr1_1:37758610-37758629 None:intergenic 30.0%
AGTTCCCATGAAATTGAAAT+TGG + chr1_1:37758757-37758776 Msa0021310:intron 30.0%
!!! CTTGTTGTTGTTTTTGTTCT+TGG + chr1_1:37759021-37759040 Msa0021310:intron 30.0%
AGAAGAACACGATAAAGAAT+AGG + chr1_1:37759074-37759093 Msa0021310:intron 30.0%
GAAGAACACGATAAAGAATA+GGG + chr1_1:37759075-37759094 Msa0021310:intron 30.0%
TCAAATTAGCAAAATGGCAT+GGG - chr1_1:37759218-37759237 None:intergenic 30.0%
ATCAAATTAGCAAAATGGCA+TGG - chr1_1:37759219-37759238 None:intergenic 30.0%
ACGTCATCAAATTAGCAAAA+TGG - chr1_1:37759224-37759243 None:intergenic 30.0%
!!! ATTTTGCTAATTTGATGACG+TGG + chr1_1:37759223-37759242 Msa0021310:intron 30.0%
TTTAACCGATTAAACTTTGC+AGG + chr1_1:37759275-37759294 Msa0021310:intron 30.0%
TTAACCGATTAAACTTTGCA+GGG + chr1_1:37759276-37759295 Msa0021310:intron 30.0%
AAAAAAGGATTAACGATTGG+AGG + chr1_1:37759305-37759324 Msa0021310:intron 30.0%
AAAAAGGATTAACGATTGGA+GGG + chr1_1:37759306-37759325 Msa0021310:intron 30.0%
CTATCATATCCTATATGAAC+CGG + chr1_1:37759567-37759586 Msa0021310:intron 30.0%
!! ACTTTTTAACTAGTATCTCG+AGG - chr1_1:37759625-37759644 None:intergenic 30.0%
!! CATTTTAACAGCTCTATTAG+AGG - chr1_1:37759819-37759838 None:intergenic 30.0%
! AATTTCACCTAAACCTGTTT+TGG + chr1_1:37760124-37760143 Msa0021310:intron 30.0%
! ATTTCACCTAAACCTGTTTT+GGG + chr1_1:37760125-37760144 Msa0021310:intron 30.0%
!! TTTCTTATAGGACTAGTTGT+GGG + chr1_1:37760219-37760238 Msa0021310:intron 30.0%
AAAGAAAAGGAGACATTAAG+GGG - chr1_1:37760264-37760283 None:intergenic 30.0%
CAAAGAAAAGGAGACATTAA+GGG - chr1_1:37760265-37760284 None:intergenic 30.0%
ACAAAGAAAAGGAGACATTA+AGG - chr1_1:37760266-37760285 None:intergenic 30.0%
! CTTTGTCATTTCAGTATAGT+AGG + chr1_1:37760280-37760299 Msa0021310:intron 30.0%
CAATCAACAATATGGAGTAA+AGG + chr1_1:37760311-37760330 Msa0021310:intron 30.0%
ATGTTGAGTGAACAATTCTT+AGG + chr1_1:37760412-37760431 Msa0021310:intron 30.0%
! TTTTCTCATTGAAGATGTTG+GGG + chr1_1:37760516-37760535 Msa0021310:intron 30.0%
! TATTGTATGGTAGTGAAAAG+TGG + chr1_1:37760643-37760662 Msa0021310:intron 30.0%
!! TTAGTAATTTTGGCCTTTCA+CGG + chr1_1:37760865-37760884 Msa0021310:intron 30.0%
CCAATTATAAGGCAATAAGT+GGG - chr1_1:37761190-37761209 None:intergenic 30.0%
ACCAATTATAAGGCAATAAG+TGG - chr1_1:37761191-37761210 None:intergenic 30.0%
!!! AAGCCTTTTTTTTCCTTGTA+TGG - chr1_1:37761493-37761512 None:intergenic 30.0%
! TTTGAAACTGAAGCAAAAGA+AGG - chr1_1:37761640-37761659 None:intergenic 30.0%
GTATAAAAATAAGCCATGCA+AGG - chr1_1:37761759-37761778 None:intergenic 30.0%
!!! TGCATGGCTTATTTTTATAC+TGG + chr1_1:37761759-37761778 Msa0021310:intron 30.0%
GACCTTATCTATAATCTATG+TGG + chr1_1:37761854-37761873 Msa0021310:intron 30.0%
TCCCACATAGATTATAGATA+AGG - chr1_1:37761859-37761878 None:intergenic 30.0%
ATAGAATTTATGGGCAACAA+TGG + chr1_1:37761978-37761997 Msa0021310:intron 30.0%
GCAAATGGCTTAACATTAAA+AGG + chr1_1:37762007-37762026 Msa0021310:CDS 30.0%
ATGGCTTAACATTAAAAGGA+AGG + chr1_1:37762011-37762030 Msa0021310:CDS 30.0%
GATTTGGAAATTGAGGATTA+TGG + chr1_1:37762208-37762227 Msa0021310:intron 30.0%
TTGACAATTCTTCCTGTATT+AGG + chr1_1:37762571-37762590 Msa0021310:intron 30.0%
! AATTTTGAATGGCCTAATAC+AGG - chr1_1:37762586-37762605 None:intergenic 30.0%
ATTAGGCCATTCAAAATTTG+TGG + chr1_1:37762588-37762607 Msa0021310:intron 30.0%
ATATAAACAAGAAGGAACTG+AGG + chr1_1:37762791-37762810 Msa0021310:CDS 30.0%
TCAATATCAAAGTCATTAGG+TGG - chr1_1:37762948-37762967 None:intergenic 30.0%
!! GTGTTTTTATATACACTTGG+TGG + chr1_1:37763295-37763314 Msa0021310:intron 30.0%
! CGAATTAAGTTTTCCCATTT+CGG - chr1_1:37763435-37763454 None:intergenic 30.0%
TCTGATGGTTTAAACTTTGA+TGG - chr1_1:37763522-37763541 None:intergenic 30.0%
TTAGAAAGCGATAGTGATAT+TGG + chr1_1:37763573-37763592 Msa0021310:CDS 30.0%
! AGCACTGAATATTAGTTTGA+AGG + chr1_1:37763665-37763684 Msa0021310:CDS 30.0%
CTTATCAAAGAAGGTTGAAT+AGG + chr1_1:37763736-37763755 Msa0021310:CDS 30.0%
GATTAGTAAGCTATCTAGAA+TGG + chr1_1:37763818-37763837 Msa0021310:CDS 30.0%
! TTAACCGGTTTAAAAGAAGT+TGG - chr1_1:37763999-37764018 None:intergenic 30.0%
AACAGATGCTATAGATTTAC+TGG + chr1_1:37764070-37764089 Msa0021310:CDS 30.0%
GAAACATATTCAGAACATGA+AGG + chr1_1:37764208-37764227 Msa0021310:CDS 30.0%
! AACTCTAGGGAAAATTTCAA+AGG - chr1_1:37764291-37764310 None:intergenic 30.0%
ACCAAAAACTACAAACTCTA+GGG - chr1_1:37764304-37764323 None:intergenic 30.0%
! AGCATTTCGTTTGATTTCAT+CGG - chr1_1:37764511-37764530 None:intergenic 30.0%
! TCATGATCCAAGATACTTTT+GGG - chr1_1:37764591-37764610 None:intergenic 30.0%
AGGCATTAGCATATAATTCA+AGG - chr1_1:37764665-37764684 None:intergenic 30.0%
TGCAGAAGAATAATTTGGTT+CGG + chr1_1:37764904-37764923 Msa0021310:intron 30.0%
! AGTTGATACATCTAATGGAA+GGG - chr1_1:37765029-37765048 None:intergenic 30.0%
!! AAGTTGATACATCTAATGGA+AGG - chr1_1:37765030-37765049 None:intergenic 30.0%
ATAATCGTGTTTAAGGGTTT+AGG + chr1_1:37765321-37765340 Msa0021310:intron 30.0%
TAATCGTGTTTAAGGGTTTA+GGG + chr1_1:37765322-37765341 Msa0021310:intron 30.0%
CTTGTGAAAGAATTAGAGAA+AGG + chr1_1:37765439-37765458 Msa0021310:CDS 30.0%
!!! TTAGAGAAAGGTGTTTTTGA+TGG + chr1_1:37765451-37765470 Msa0021310:CDS 30.0%
TTAATCTCGTACTTATAGGT+TGG - chr1_1:37765505-37765524 None:intergenic 30.0%
TGAGATTACTGAGTTACAAA+AGG + chr1_1:37765843-37765862 Msa0021310:CDS 30.0%
TGGAATTTAGCAACATAATC+TGG + chr1_1:37766013-37766032 Msa0021310:exon 30.0%
! TTTTCCGTAACCTTTACTTT+CGG + chr1_1:37766102-37766121 Msa0021310:intron 30.0%
! GACTGTATGATTTGTACATA+TGG + chr1_1:37766292-37766311 Msa0021310:three_prime_UTR 30.0%
GATTAGTAGGTATACTGATC+AGG - chr1_1:37754898-37754917 None:intergenic 35.0%
TTTGAGGGTCATTTCGTTTA+AGG + chr1_1:37755347-37755366 Msa0021310:intron 35.0%
TTGAGGGTCATTTCGTTTAA+GGG + chr1_1:37755348-37755367 Msa0021310:intron 35.0%
TAAAGTGCAAAAGCCCTAAA+AGG + chr1_1:37756222-37756241 Msa0021310:intron 35.0%
! TGGAAGTATGATCTCTCTTA+AGG + chr1_1:37756823-37756842 Msa0021310:exon 35.0%
AAGTATGATCTCTCTTAAGG+AGG + chr1_1:37756826-37756845 Msa0021310:exon 35.0%
TAGATAAGAGCAATGAAGCA+TGG - chr1_1:37757198-37757217 None:intergenic 35.0%
ATCCATTTCTCACATCTATG+TGG - chr1_1:37757281-37757300 None:intergenic 35.0%
GAGCTTTCTCAATACCAAAT+AGG + chr1_1:37757317-37757336 Msa0021310:intron 35.0%
!!! TGAGTTTGTTTTGCCCTATT+TGG - chr1_1:37757334-37757353 None:intergenic 35.0%
!!! GGTGTTGACTTAGAATTTTG+GGG + chr1_1:37757435-37757454 Msa0021310:intron 35.0%
CAACTAAGTAACAAGATGAG+TGG - chr1_1:37758157-37758176 None:intergenic 35.0%
! AAAAAGGATTAGCGATTGGA+GGG - chr1_1:37758331-37758350 None:intergenic 35.0%
! AAAAAAGGATTAGCGATTGG+AGG - chr1_1:37758332-37758351 None:intergenic 35.0%
CTTTACAGGGGCAAAAAAAA+AGG - chr1_1:37758347-37758366 None:intergenic 35.0%
TAACATGGCAGTCATTAACT+GGG - chr1_1:37758398-37758417 None:intergenic 35.0%
ATAACATGGCAGTCATTAAC+TGG - chr1_1:37758399-37758418 None:intergenic 35.0%
GACTGCCATGTTATCAAATT+TGG + chr1_1:37758405-37758424 Msa0021310:intron 35.0%
AAGAGAAGAAGATGAAGAGA+GGG - chr1_1:37758460-37758479 None:intergenic 35.0%
AAAGAGAAGAAGATGAAGAG+AGG - chr1_1:37758461-37758480 None:intergenic 35.0%
TGCAGATCGTAAGAAAAAGA+GGG - chr1_1:37758484-37758503 None:intergenic 35.0%
TTGCAGATCGTAAGAAAAAG+AGG - chr1_1:37758485-37758504 None:intergenic 35.0%
!! AAGAAAGCTTTGAAGTAGGA+AGG - chr1_1:37758538-37758557 None:intergenic 35.0%
!! GAAGAAGAAAGCTTTGAAGT+AGG - chr1_1:37758542-37758561 None:intergenic 35.0%
ATGGAAGAGATGGATACAAT+TGG - chr1_1:37758585-37758604 None:intergenic 35.0%
!! AATGTTCTTGGTCTTGTTCT+TGG + chr1_1:37759121-37759140 Msa0021310:intron 35.0%
!! ATGTTCTTGGTCTTGTTCTT+GGG + chr1_1:37759122-37759141 Msa0021310:intron 35.0%
TAACCGATTAAACTTTGCAG+GGG + chr1_1:37759277-37759296 Msa0021310:intron 35.0%
TTTGCAGGGGCAAAAAAAAA+AGG + chr1_1:37759290-37759309 Msa0021310:intron 35.0%
AAGTGATCAAATTGAGGCAA+AGG + chr1_1:37759390-37759409 Msa0021310:intron 35.0%
TTGTGCTATCAAATGCATGT+AGG + chr1_1:37759427-37759446 Msa0021310:intron 35.0%
!! TATATCTTGCCGGTTCATAT+AGG - chr1_1:37759579-37759598 None:intergenic 35.0%
CATGATCAACGCTTTCTTAT+AGG + chr1_1:37760207-37760226 Msa0021310:intron 35.0%
!! CTTTCTTATAGGACTAGTTG+TGG + chr1_1:37760218-37760237 Msa0021310:intron 35.0%
!! TTCTTATAGGACTAGTTGTG+GGG + chr1_1:37760220-37760239 Msa0021310:intron 35.0%
AGAATTGTTCACTCAACATG+TGG - chr1_1:37760411-37760430 None:intergenic 35.0%
ACAATTCTTAGGCCAACATA+CGG + chr1_1:37760423-37760442 Msa0021310:intron 35.0%
ATTAGGACGTCACAGTTATT+TGG - chr1_1:37760494-37760513 None:intergenic 35.0%
TTTCTCATTGAAGATGTTGG+GGG + chr1_1:37760517-37760536 Msa0021310:intron 35.0%
CATGCAGGAAAGGAATTATT+AGG + chr1_1:37760689-37760708 Msa0021310:intron 35.0%
AAGTCGTCCAAAATCACTTA+TGG - chr1_1:37760917-37760936 None:intergenic 35.0%
CCCACTTATTGCCTTATAAT+TGG + chr1_1:37761187-37761206 Msa0021310:intron 35.0%
ATTTGGAGGATAAAACAGAG+TGG + chr1_1:37761293-37761312 Msa0021310:intron 35.0%
TTTGCATCTTCAAATACGGT+CGG + chr1_1:37761549-37761568 Msa0021310:intron 35.0%
GAACAAGAACAAGCAAAAGA+AGG - chr1_1:37761581-37761600 None:intergenic 35.0%
CAAGAACATGAAGCAAAAGA+AGG - chr1_1:37761609-37761628 None:intergenic 35.0%
CTAACTCATCCTTACAAAAC+CGG + chr1_1:37761790-37761809 Msa0021310:intron 35.0%
! AGTTGGTGTTTGTGAGTATT+TGG + chr1_1:37761892-37761911 Msa0021310:intron 35.0%
TTGTGAGTATTTGGAAACTG+AGG + chr1_1:37761901-37761920 Msa0021310:intron 35.0%
! GAGCTGAAGTGTATATTTTC+TGG + chr1_1:37761941-37761960 Msa0021310:intron 35.0%
!!! GAAGTGTATATTTTCTGGCT+TGG + chr1_1:37761946-37761965 Msa0021310:intron 35.0%
CATCATCATCATCATCATCA+GGG - chr1_1:37762059-37762078 None:intergenic 35.0%
TCATCATCATCATCATCATC+AGG - chr1_1:37762060-37762079 None:intergenic 35.0%
! TGATGATGATGATGATGATG+AGG + chr1_1:37762059-37762078 Msa0021310:CDS 35.0%
TCATTGTCTGAATCAGTTTC+AGG - chr1_1:37762093-37762112 None:intergenic 35.0%
! GAAACTGATTCAGACAATGA+AGG + chr1_1:37762093-37762112 Msa0021310:CDS 35.0%
ATAGTCTTCTGCTAATGACA+CGG - chr1_1:37762179-37762198 None:intergenic 35.0%
TGTGTGATGAATGATGATTC+TGG + chr1_1:37762300-37762319 Msa0021310:intron 35.0%
!! ATGATGATTCTGGTTCAGTT+TGG + chr1_1:37762310-37762329 Msa0021310:intron 35.0%
AATGATGTATCACCATCCAA+CGG - chr1_1:37762523-37762542 None:intergenic 35.0%
! GGGAATCCACAAATTTTGAA+TGG - chr1_1:37762597-37762616 None:intergenic 35.0%
TTTAGTGTGAAACTTACCCA+AGG - chr1_1:37763010-37763029 None:intergenic 35.0%
TTAAACTTTGATGGAGATGG+AGG - chr1_1:37763513-37763532 None:intergenic 35.0%
GGTTTAAACTTTGATGGAGA+TGG - chr1_1:37763516-37763535 None:intergenic 35.0%
TTCAGTGCTTCATCTATGAT+TGG - chr1_1:37763654-37763673 None:intergenic 35.0%
TGGGACTGAAAAAGATTCAT+CGG + chr1_1:37763845-37763864 Msa0021310:CDS 35.0%
! AAGCTATCTAGAATGGTTAG+TGG + chr1_1:37763903-37763922 Msa0021310:CDS 35.0%
! AGCTATCTAGAATGGTTAGT+GGG + chr1_1:37763904-37763923 Msa0021310:CDS 35.0%
!! TTCTGAGGCAACAAATGTAA+TGG - chr1_1:37763963-37763982 None:intergenic 35.0%
! TTTGTTGCCTCAGAAAGTAT+TGG + chr1_1:37763968-37763987 Msa0021310:CDS 35.0%
! GAGACCAACTTCTTTTAAAC+CGG + chr1_1:37763992-37764011 Msa0021310:CDS 35.0%
! ATCTTGAAGCTTTGATGAAG+AGG + chr1_1:37764102-37764121 Msa0021310:CDS 35.0%
!! GATGGTTGGTATTTTCATCA+CGG + chr1_1:37764163-37764182 Msa0021310:CDS 35.0%
! TTGGTATTTTCATCACGGTA+TGG + chr1_1:37764168-37764187 Msa0021310:CDS 35.0%
! TGGTATTTTCATCACGGTAT+GGG + chr1_1:37764169-37764188 Msa0021310:CDS 35.0%
AACATGAAGGTTTCAACTGT+TGG + chr1_1:37764221-37764240 Msa0021310:CDS 35.0%
! TATGGGCTATATTGGTAACA+AGG + chr1_1:37764253-37764272 Msa0021310:CDS 35.0%
! TCCCTAGAGTTTGTAGTTTT+TGG + chr1_1:37764300-37764319 Msa0021310:intron 35.0%
GACCAAAAACTACAAACTCT+AGG - chr1_1:37764305-37764324 None:intergenic 35.0%
ATGTTCGTGAAATACATCAG+AGG + chr1_1:37764532-37764551 Msa0021310:CDS 35.0%
! CTCATGATCCAAGATACTTT+TGG - chr1_1:37764592-37764611 None:intergenic 35.0%
TGCTGAAATTCTGTATTCAC+TGG + chr1_1:37764835-37764854 Msa0021310:intron 35.0%
TATCATATGGCAAGCTGATA+CGG - chr1_1:37764942-37764961 None:intergenic 35.0%
! TAATGGAAGGGTATATTACC+TGG - chr1_1:37765017-37765036 None:intergenic 35.0%
TCGATGAATTTACTGAGTGA+CGG - chr1_1:37765164-37765183 None:intergenic 35.0%
!!! AGAAAGGTGTTTTTGATGGA+TGG + chr1_1:37765455-37765474 Msa0021310:CDS 35.0%
CGTATTCTATCACATGGAAA+TGG + chr1_1:37765818-37765837 Msa0021310:CDS 35.0%
! TTCATTTTCGATCTCTGCAT+CGG - chr1_1:37765969-37765988 None:intergenic 35.0%
GAAGAAGTCATGACAAGTTT+CGG + chr1_1:37765986-37766005 Msa0021310:CDS 35.0%
TTTAGCAACATAATCTGGAC+AGG + chr1_1:37766018-37766037 Msa0021310:exon 35.0%
ACAAAGCCAATCTATCAACT+AGG - chr1_1:37766341-37766360 None:intergenic 35.0%
TCATCACTTGGAAATTCACA+TGG - chr1_1:37766388-37766407 None:intergenic 35.0%
GTGGTATTTGAATCATCACT+TGG - chr1_1:37766400-37766419 None:intergenic 35.0%
TTCTTCAATCCCTTTCCTCA+TGG + chr1_1:37754807-37754826 Msa0021310:five_prime_UTR 40.0%
CTGACGAAGGAACATATATC+TGG + chr1_1:37754981-37755000 Msa0021310:five_prime_UTR 40.0%
AGATGGTACTCCAGTATAAG+AGG + chr1_1:37755197-37755216 Msa0021310:intron 40.0%
GACCCTCAAATATTGAGAGA+AGG - chr1_1:37755337-37755356 None:intergenic 40.0%
ATAAAGTTGAGGCTCCCTAA+AGG - chr1_1:37756487-37756506 None:intergenic 40.0%
TCATGTTCTACGAAGAAGAG+TGG + chr1_1:37756797-37756816 Msa0021310:intron 40.0%
CACATCTTTAATGTCGGTGA+TGG - chr1_1:37757222-37757241 None:intergenic 40.0%
!! ATCCATTCGGATTGAGTTGA+TGG + chr1_1:37757414-37757433 Msa0021310:intron 40.0%
TCATTATCTTCAACTAGGGG+CGG + chr1_1:37757911-37757930 Msa0021310:intron 40.0%
CTCACCAATATTGTAAGTCC+AGG - chr1_1:37757938-37757957 None:intergenic 40.0%
GTAACAAGATGAGTGGTCAA+TGG - chr1_1:37758150-37758169 None:intergenic 40.0%
TAGCTACTAAATCCCCACAT+CGG + chr1_1:37758216-37758235 Msa0021310:intron 40.0%
! AAAACTGTCATTTCGCGTGT+GGG - chr1_1:37758435-37758454 None:intergenic 40.0%
! TAAAACTGTCATTTCGCGTG+TGG - chr1_1:37758436-37758455 None:intergenic 40.0%
AGAGAAGAAGATGAAGAGAG+GGG - chr1_1:37758459-37758478 None:intergenic 40.0%
GAAGAGATGGATACAATTGG+TGG - chr1_1:37758582-37758601 None:intergenic 40.0%
!! CTTGTTTGTATTGGTGGTGA+TGG - chr1_1:37758604-37758623 None:intergenic 40.0%
! AGGGAGAAGAAAAACGGATT+GGG - chr1_1:37758720-37758739 None:intergenic 40.0%
AAGGAGAGGGAGAAGAAAAA+CGG - chr1_1:37758726-37758745 None:intergenic 40.0%
AACCACGTGAATAACAAGAC+CGG + chr1_1:37758785-37758804 Msa0021310:intron 40.0%
ATTGGTGCATGTTATTCACG+TGG - chr1_1:37758833-37758852 None:intergenic 40.0%
CATGCACCAATTTCAGAAAC+CGG + chr1_1:37758842-37758861 Msa0021310:intron 40.0%
!! GAGTTTCCGGTTTCTGAAAT+TGG - chr1_1:37758851-37758870 None:intergenic 40.0%
AGGGAAGAAGAGGTTGTTAT+CGG + chr1_1:37758878-37758897 Msa0021310:intron 40.0%
!! AGTTTGGTCTGGTTTGGTTA+TGG + chr1_1:37758989-37759008 Msa0021310:intron 40.0%
!! GTTTGGTCTGGTTTGGTTAT+GGG + chr1_1:37758990-37759009 Msa0021310:intron 40.0%
!! TTTGTTCTTGGTCTTGTTGC+TGG + chr1_1:37759033-37759052 Msa0021310:intron 40.0%
CACGATAAAGAATAGGGAGA+AGG + chr1_1:37759081-37759100 Msa0021310:intron 40.0%
GAAGAGGGAATGAATGTTCT+TGG + chr1_1:37759109-37759128 Msa0021310:intron 40.0%
TGTTCTGCAGATCAGTAAGA+AGG + chr1_1:37759150-37759169 Msa0021310:intron 40.0%
GGAATGAGAAGATGAAGACA+GGG + chr1_1:37759177-37759196 Msa0021310:intron 40.0%
GAATGAGAAGATGAAGACAG+GGG + chr1_1:37759178-37759197 Msa0021310:intron 40.0%
TTAGCAAAATGGCATGGGAA+TGG - chr1_1:37759213-37759232 None:intergenic 40.0%
TTGCCCCTGCAAAGTTTAAT+CGG - chr1_1:37759283-37759302 None:intergenic 40.0%
TGATTCGTCCTTGCAAATAG+GGG - chr1_1:37759348-37759367 None:intergenic 40.0%
GTGATTCGTCCTTGCAAATA+GGG - chr1_1:37759349-37759368 None:intergenic 40.0%
TGTGATTCGTCCTTGCAAAT+AGG - chr1_1:37759350-37759369 None:intergenic 40.0%
TTCTCATTGAAGATGTTGGG+GGG + chr1_1:37760518-37760537 Msa0021310:intron 40.0%
GAAAAGTGGCATAAAGCAAC+AGG + chr1_1:37760657-37760676 Msa0021310:intron 40.0%
ATTCCTTTCCTGCATGTGAT+TGG - chr1_1:37760685-37760704 None:intergenic 40.0%
! CTGTGAGCCATAAGTGATTT+TGG + chr1_1:37760907-37760926 Msa0021310:intron 40.0%
TTTCTTTGTTCAGCCTTGCA+TGG + chr1_1:37761743-37761762 Msa0021310:intron 40.0%
TTTGTAAGGATGAGTTAGGC+CGG - chr1_1:37761788-37761807 None:intergenic 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG - chr1_1:37761792-37761811 None:intergenic 40.0%
!! TCTTACAAGCCGGTTTTGTA+AGG - chr1_1:37761802-37761821 None:intergenic 40.0%
!! TTACAAAACCGGCTTGTAAG+AGG + chr1_1:37761801-37761820 Msa0021310:intron 40.0%
ATCATCATCATCATCAGGGT+CGG - chr1_1:37762055-37762074 None:intergenic 40.0%
CATTCATCACACACAAGACA+TGG - chr1_1:37762293-37762312 None:intergenic 40.0%
CAAGACTAGTATAATGCCGT+TGG + chr1_1:37762504-37762523 Msa0021310:intron 40.0%
ACTAGTATAATGCCGTTGGA+TGG + chr1_1:37762508-37762527 Msa0021310:intron 40.0%
GCTCTCAAAAGTCGAATATG+AGG - chr1_1:37762643-37762662 None:intergenic 40.0%
! GGCAAAAGTCATTGACTGTA+AGG + chr1_1:37762761-37762780 Msa0021310:CDS 40.0%
AACAAGAAGGAACTGAGGTT+AGG + chr1_1:37762796-37762815 Msa0021310:intron 40.0%
CAGCAGAATTCAGATATGAG+AGG - chr1_1:37762872-37762891 None:intergenic 40.0%
TTAGAGTATGTGTTGGGACA+TGG + chr1_1:37762904-37762923 Msa0021310:intron 40.0%
CTGCTGATATCTATGTCCTT+GGG + chr1_1:37762991-37763010 Msa0021310:CDS 40.0%
! AAGTTTTCCCATTTCGGTAC+AGG - chr1_1:37763429-37763448 None:intergenic 40.0%
ATATCTGGTGCATCATCTGA+TGG - chr1_1:37763537-37763556 None:intergenic 40.0%
AAGCGATAGTGATATTGGTG+AGG + chr1_1:37763578-37763597 Msa0021310:CDS 40.0%
GTTAGTGGGACTGAAAGAAT+TGG + chr1_1:37763918-37763937 Msa0021310:CDS 40.0%
!! CTGAAAGAATTGGTTTGAGC+TGG + chr1_1:37763928-37763947 Msa0021310:CDS 40.0%
AACAAATGTAATGGTGGCTC+TGG - chr1_1:37763954-37763973 None:intergenic 40.0%
TGAGGCAACAAATGTAATGG+TGG - chr1_1:37763960-37763979 None:intergenic 40.0%
! TGTTCTGAATATGTTTCCGC+AGG - chr1_1:37764205-37764224 None:intergenic 40.0%
AAGGTTTCAACTGTTGGTGT+TGG + chr1_1:37764227-37764246 Msa0021310:CDS 40.0%
!! AACTGTTGGTGTTGGTGTTA+TGG + chr1_1:37764235-37764254 Msa0021310:CDS 40.0%
!! ACTGTTGGTGTTGGTGTTAT+GGG + chr1_1:37764236-37764255 Msa0021310:CDS 40.0%
!! GTTGGTGTTATGGGCTATAT+TGG + chr1_1:37764245-37764264 Msa0021310:CDS 40.0%
CTTTATATGCACCCACCTTA+CGG + chr1_1:37764470-37764489 Msa0021310:CDS 40.0%
!! TGGACTTCCCAAAAGTATCT+TGG + chr1_1:37764581-37764600 Msa0021310:CDS 40.0%
!! CTGCAAATTCTGTTTCTGCT+TGG + chr1_1:37764811-37764830 Msa0021310:intron 40.0%
AAAATTGGTTGAGAGAGACC+AGG + chr1_1:37764996-37765015 Msa0021310:CDS 40.0%
!! GTTTTTGATGGATGGTCAGA+AGG + chr1_1:37765463-37765482 Msa0021310:CDS 40.0%
!! TCTCGTACTTATAGGTTGGT+GGG - chr1_1:37765501-37765520 None:intergenic 40.0%
! ATCTCGTACTTATAGGTTGG+TGG - chr1_1:37765502-37765521 None:intergenic 40.0%
TTCAGACAAGTACATTGGAG+AGG + chr1_1:37765525-37765544 Msa0021310:CDS 40.0%
CAAACTAAAGCATACCATGC+TGG - chr1_1:37765574-37765593 None:intergenic 40.0%
AGAATACGATCGCACCTATA+AGG - chr1_1:37765806-37765825 None:intergenic 40.0%
TGCGATCGTATTCTATCACA+TGG + chr1_1:37765812-37765831 Msa0021310:CDS 40.0%
TGCACCGAAAGTAAAGGTTA+CGG - chr1_1:37766109-37766128 None:intergenic 40.0%
ATATCCTGCACCGAAAGTAA+AGG - chr1_1:37766115-37766134 None:intergenic 40.0%
ACACTTTCTCTCAGTCTCAG+TGG - chr1_1:37754868-37754887 None:intergenic 45.0%
TCAAGTGTCCTTGCAAGCAA+CGG + chr1_1:37754949-37754968 Msa0021310:five_prime_UTR 45.0%
!! GGTTTTGTCTATCTCAGGGT+TGG + chr1_1:37756402-37756421 Msa0021310:intron 45.0%
TCTACGAAGAAGAGTGGCTA+TGG + chr1_1:37756803-37756822 Msa0021310:intron 45.0%
CGCCACATAGATGTGAGAAA+TGG + chr1_1:37757276-37757295 Msa0021310:intron 45.0%
CACCATCAACTCAATCCGAA+TGG - chr1_1:37757419-37757438 None:intergenic 45.0%
CGGACCTGGACTTACAATAT+TGG + chr1_1:37757931-37757950 Msa0021310:intron 45.0%
TGTGATTCGTCCCTGCAAAT+AGG + chr1_1:37758287-37758306 Msa0021310:intron 45.0%
GTGATTCGTCCCTGCAAATA+GGG + chr1_1:37758288-37758307 Msa0021310:intron 45.0%
TGATTCGTCCCTGCAAATAG+GGG + chr1_1:37758289-37758308 Msa0021310:intron 45.0%
TTAAGCGACCCCTATTTGCA+GGG - chr1_1:37759337-37759356 None:intergenic 45.0%
TTTAAGCGACCCCTATTTGC+AGG - chr1_1:37759336-37759355 None:intergenic 45.0%
GCAGTCATTAACTGGGTCAA+GGG - chr1_1:37759245-37759264 None:intergenic 45.0%
!! ATGGATACAATTGGTGGTGG+TGG - chr1_1:37758576-37758595 None:intergenic 45.0%
GAGATGGATACAATTGGTGG+TGG - chr1_1:37758579-37758598 None:intergenic 45.0%
!! ATTGGTGGTGATGGAAGAGA+TGG - chr1_1:37758595-37758614 None:intergenic 45.0%
! TGGGTTGTTGTTGTGGTTGT+TGG - chr1_1:37758701-37758720 None:intergenic 45.0%
!! AACGGATTGGGTTGTTGTTG+TGG - chr1_1:37758708-37758727 None:intergenic 45.0%
GAGGGAGAAGAAAAACGGAT+TGG - chr1_1:37758721-37758740 None:intergenic 45.0%
TTCATGGGAACTGATGCATC+TGG - chr1_1:37758749-37758768 None:intergenic 45.0%
!! TTCCGGTCTTGTTATTCACG+TGG - chr1_1:37758790-37758809 None:intergenic 45.0%
GAAGAAGAGGTTGTTATCGG+CGG + chr1_1:37758881-37758900 Msa0021310:intron 45.0%
ACTGGATGCGAAATCATGAC+CGG + chr1_1:37758917-37758936 Msa0021310:intron 45.0%
TATCTGCTCTGATCCTCTTC+CGG - chr1_1:37758939-37758958 None:intergenic 45.0%
GAAGAGGATCAGAGCAGATA+CGG + chr1_1:37758939-37758958 Msa0021310:intron 45.0%
ATCGGAAGTTTGGTCTGGTT+TGG + chr1_1:37758983-37759002 Msa0021310:intron 45.0%
TAGGGAGAAGGAAGAAGAAG+AGG + chr1_1:37759093-37759112 Msa0021310:intron 45.0%
AGGGAGAAGGAAGAAGAAGA+GGG + chr1_1:37759094-37759113 Msa0021310:intron 45.0%
TGCAGATCAGTAAGAAGGAG+AGG + chr1_1:37759155-37759174 Msa0021310:intron 45.0%
GCAGATCAGTAAGAAGGAGA+GGG + chr1_1:37759156-37759175 Msa0021310:intron 45.0%
GGGAATGAGAAGATGAAGAC+AGG + chr1_1:37759176-37759195 Msa0021310:intron 45.0%
ATGACGTGGCAGTCATTAAC+TGG + chr1_1:37759237-37759256 Msa0021310:intron 45.0%
TGACGTGGCAGTCATTAACT+GGG + chr1_1:37759238-37759257 Msa0021310:intron 45.0%
GCAGTCATTAACTGGGTCAA+GGG + chr1_1:37759245-37759264 Msa0021310:intron 45.0%
TTAAGCGACCCCTATTTGCA+AGG + chr1_1:37759337-37759356 Msa0021310:intron 45.0%
TTCTGGCCCAAAACAGGTTT+AGG - chr1_1:37760134-37760153 None:intergenic 45.0%
!! AAACCTGTTTTGGGCCAGAA+TGG + chr1_1:37760134-37760153 Msa0021310:intron 45.0%
!! AACCTGTTTTGGGCCAGAAT+GGG + chr1_1:37760135-37760154 Msa0021310:intron 45.0%
!! TCAATGAAGGTACCCCATTC+TGG - chr1_1:37760151-37760170 None:intergenic 45.0%
GGGTACCTTCATTGAATGCT+GGG + chr1_1:37760156-37760175 Msa0021310:intron 45.0%
GGTACCTTCATTGAATGCTG+GGG + chr1_1:37760157-37760176 Msa0021310:intron 45.0%
ATCACACACATCACGACCAT+TGG - chr1_1:37760184-37760203 None:intergenic 45.0%
TCTCATTGAAGATGTTGGGG+GGG + chr1_1:37760519-37760538 Msa0021310:intron 45.0%
AACAGGAACCAATCACATGC+AGG + chr1_1:37760674-37760693 Msa0021310:intron 45.0%
GAACCAATCACATGCAGGAA+AGG + chr1_1:37760679-37760698 Msa0021310:intron 45.0%
GAAACCAAAGACACCGTGAA+AGG - chr1_1:37760881-37760900 None:intergenic 45.0%
TTGACCCGTGATTATAGCCA+CGG + chr1_1:37761163-37761182 Msa0021310:intron 45.0%
! GAGTACCTGTTGTTGCTTGT+TGG - chr1_1:37761723-37761742 None:intergenic 45.0%
ACACTCATCCTCTTACAAGC+CGG - chr1_1:37761812-37761831 None:intergenic 45.0%
!! GGGACTTGATTTGTGCAAGT+TGG + chr1_1:37761875-37761894 Msa0021310:intron 45.0%
CAACAATGGTCATGCGCAAA+TGG + chr1_1:37761992-37762011 Msa0021310:CDS 45.0%
TTTGGGTGTATTGTGCAGAG+TGG + chr1_1:37762360-37762379 Msa0021310:intron 45.0%
TTGGGTGTATTGTGCAGAGT+GGG + chr1_1:37762361-37762380 Msa0021310:intron 45.0%
TAGTCACCATCTGATTCAGC+CGG - chr1_1:37762428-37762447 None:intergenic 45.0%
TGAACTGCAGAATTTCTCCC+AGG + chr1_1:37762730-37762749 Msa0021310:intron 45.0%
CAGAATTTCTCCCAGGCTTA+AGG + chr1_1:37762737-37762756 Msa0021310:intron 45.0%
AATTTCTCCCAGGCTTAAGG+AGG + chr1_1:37762740-37762759 Msa0021310:CDS 45.0%
! ACTTTTGCCTCCTTAAGCCT+GGG - chr1_1:37762750-37762769 None:intergenic 45.0%
TGTGTTGGGACATGGAATGT+TGG + chr1_1:37762912-37762931 Msa0021310:CDS 45.0%
GGACATAGATATCAGCAGGA+TGG - chr1_1:37762989-37763008 None:intergenic 45.0%
CCAAGGACATAGATATCAGC+AGG - chr1_1:37762993-37763012 None:intergenic 45.0%
CCTGCTGATATCTATGTCCT+TGG + chr1_1:37762990-37763009 Msa0021310:CDS 45.0%
ATACTCGTCCTGTACCGAAA+TGG + chr1_1:37763418-37763437 Msa0021310:CDS 45.0%
TACTCGTCCTGTACCGAAAT+GGG + chr1_1:37763419-37763438 Msa0021310:CDS 45.0%
TGGAGATGGAGGATCACTAA+AGG - chr1_1:37763502-37763521 None:intergenic 45.0%
GGTGAGGAGATTCATCCTTT+AGG + chr1_1:37763594-37763613 Msa0021310:CDS 45.0%
TAGGCTAAATCATTTCCGCG+AGG + chr1_1:37763755-37763774 Msa0021310:CDS 45.0%
TTTCCGCGAGGAAGATTCAT+CGG + chr1_1:37763767-37763786 Msa0021310:CDS 45.0%
TTTCCGATGAATCTTCCTCG+CGG - chr1_1:37763773-37763792 None:intergenic 45.0%
GGTCTCTCCAATACTTTCTG+AGG - chr1_1:37763978-37763997 None:intergenic 45.0%
GAAGATAGTGAGCAAGCAGA+TGG + chr1_1:37764145-37764164 Msa0021310:CDS 45.0%
ATAGTGAGCAAGCAGATGGT+TGG + chr1_1:37764149-37764168 Msa0021310:CDS 45.0%
!! TCCAGAGGAAGGTGTTAATG+CGG - chr1_1:37765069-37765088 None:intergenic 45.0%
ATGAATTGTGCTCCAGAGGA+AGG - chr1_1:37765080-37765099 None:intergenic 45.0%
TCACATGAATTGTGCTCCAG+AGG - chr1_1:37765084-37765103 None:intergenic 45.0%
TGCCATATATGTGGCAGTCA+CGG - chr1_1:37765897-37765916 None:intergenic 45.0%
CTCAACCTCTGCCATATATG+TGG - chr1_1:37765906-37765925 None:intergenic 45.0%
CACATATATGGCAGAGGTTG+AGG + chr1_1:37765904-37765923 Msa0021310:CDS 45.0%
TCATGACAAGTTTCGGCACT+TGG + chr1_1:37765993-37766012 Msa0021310:CDS 45.0%
! GTAACCTTTACTTTCGGTGC+AGG + chr1_1:37766108-37766127 Msa0021310:intron 45.0%
!!! CAAAAAAATTAATTTTATAT+GGG - chr1_1:37755748-37755767 None:intergenic 5.0%
!!! ACAAAAAAATTAATTTTATA+TGG - chr1_1:37755749-37755768 None:intergenic 5.0%
!!! TTTTAATATTTTAATGTAAT+AGG - chr1_1:37756882-37756901 None:intergenic 5.0%
!!! ATTAATTAATTTAGTAATTT+TGG + chr1_1:37760855-37760874 Msa0021310:intron 5.0%
!!! TTATTTTATTTATATTTTTC+AGG + chr1_1:37764404-37764423 Msa0021310:intron 5.0%
!!! TATTTTATTTATATTTTTCA+GGG + chr1_1:37764405-37764424 Msa0021310:intron 5.0%
TGTTGCAACCGTTGCTTGCA+AGG - chr1_1:37754960-37754979 None:intergenic 50.0%
GGGAGCCTCAACTTTATGAG+TGG + chr1_1:37756490-37756509 Msa0021310:intron 50.0%
GAGAAAGCTCAACACACGAC+AGG - chr1_1:37757307-37757326 None:intergenic 50.0%
CTTGCAATGTAGCCGATGTG+GGG - chr1_1:37758231-37758250 None:intergenic 50.0%
GCTTGCAATGTAGCCGATGT+GGG - chr1_1:37758232-37758251 None:intergenic 50.0%
AGCTTGCAATGTAGCCGATG+TGG - chr1_1:37758233-37758252 None:intergenic 50.0%
GGCAGTCATTAACTGGGTCA+AGG - chr1_1:37759244-37759263 None:intergenic 50.0%
!! ATTGGTGGTGGTGGAAGAGA+TGG - chr1_1:37758567-37758586 None:intergenic 50.0%
CTGATGCATCTGGAAGGAGA+GGG - chr1_1:37758739-37758758 None:intergenic 50.0%
ACTGATGCATCTGGAAGGAG+AGG - chr1_1:37758740-37758759 None:intergenic 50.0%
TGGGAACTGATGCATCTGGA+AGG - chr1_1:37758745-37758764 None:intergenic 50.0%
TCACGTGGTTATTCCCTCTC+CGG - chr1_1:37758818-37758837 None:intergenic 50.0%
TTCAGAAACCGGAAACTCGC+CGG + chr1_1:37758853-37758872 Msa0021310:intron 50.0%
ACAACCTCTTCTTCCCTCTC+CGG - chr1_1:37758875-37758894 None:intergenic 50.0%
TGCGAAATCATGACCGGAAG+AGG + chr1_1:37758923-37758942 Msa0021310:intron 50.0%
GGCAGTCATTAACTGGGTCA+AGG + chr1_1:37759244-37759263 Msa0021310:intron 50.0%
!! TATGTTTGGTGTGGCCCACA+TGG + chr1_1:37759523-37759542 Msa0021310:intron 50.0%
!! ATGTTTGGTGTGGCCCACAT+GGG + chr1_1:37759524-37759543 Msa0021310:intron 50.0%
TCTTAGACCATCCCCCATGT+GGG - chr1_1:37759540-37759559 None:intergenic 50.0%
!! ACCTGTTTTGGGCCAGAATG+GGG + chr1_1:37760136-37760155 Msa0021310:intron 50.0%
! GGGGTACCTTCATTGAATGC+TGG + chr1_1:37760155-37760174 Msa0021310:intron 50.0%
TGGTCCCCAGCATTCAATGA+AGG - chr1_1:37760164-37760183 None:intergenic 50.0%
CATTGAATGCTGGGGACCAA+TGG + chr1_1:37760165-37760184 Msa0021310:intron 50.0%
TGGTTGTGTGCACCGTATGT+TGG - chr1_1:37760438-37760457 None:intergenic 50.0%
CTCATTGAAGATGTTGGGGG+GGG + chr1_1:37760520-37760539 Msa0021310:intron 50.0%
TCATTGAAGATGTTGGGGGG+GGG + chr1_1:37760521-37760540 Msa0021310:intron 50.0%
! TTGGCCTTTCACGGTGTCTT+TGG + chr1_1:37760874-37760893 Msa0021310:intron 50.0%
TGGGTCCGTGGCTATAATCA+CGG - chr1_1:37761171-37761190 None:intergenic 50.0%
TAAGGCAATAAGTGGGTCCG+TGG - chr1_1:37761183-37761202 None:intergenic 50.0%
CACAGCCAACAAGCAACAAC+AGG + chr1_1:37761715-37761734 Msa0021310:CDS 50.0%
TGGGTGTATTGTGCAGAGTG+GGG + chr1_1:37762362-37762381 Msa0021310:intron 50.0%
! GACTTTTGCCTCCTTAAGCC+TGG - chr1_1:37762751-37762770 None:intergenic 50.0%
GTTGGGACATGGAATGTTGG+AGG + chr1_1:37762915-37762934 Msa0021310:CDS 50.0%
TCATCACGGTATGGGTTCGA+AGG + chr1_1:37764177-37764196 Msa0021310:CDS 50.0%
! CTTTTCACCTGCCGTAAGGT+GGG - chr1_1:37764484-37764503 None:intergenic 50.0%
! CTTCCTTTTCACCTGCCGTA+AGG - chr1_1:37764488-37764507 None:intergenic 50.0%
ACCGCATTAACACCTTCCTC+TGG + chr1_1:37765065-37765084 Msa0021310:intron 50.0%
GTACATTGGAGAGGACCCAA+AGG + chr1_1:37765534-37765553 Msa0021310:CDS 50.0%
ACCCGTGACTGCCACATATA+TGG + chr1_1:37765892-37765911 Msa0021310:CDS 50.0%
GCCATATATGTGGCAGTCAC+GGG - chr1_1:37765896-37765915 None:intergenic 50.0%
GACTGCCACATATATGGCAG+AGG + chr1_1:37765898-37765917 Msa0021310:CDS 50.0%
AGTGCTCGCTGTAGCTTCTT+TGG - chr1_1:37765938-37765957 None:intergenic 50.0%
ACGGTTGCAACAGCTGACGA+AGG + chr1_1:37754968-37754987 Msa0021310:five_prime_UTR 55.0%
TAACAAGACCGGAAGCTCGC+CGG + chr1_1:37758796-37758815 Msa0021310:intron 55.0%
GGTTGTTATCGGCGGAGAGA+CGG + chr1_1:37758889-37758908 Msa0021310:intron 55.0%
GAGGATCAGAGCAGATACGG+CGG + chr1_1:37758942-37758961 Msa0021310:intron 55.0%
ATGGCTCGCGATCGGAAGTT+TGG + chr1_1:37758973-37758992 Msa0021310:intron 55.0%
TCGCGATCGGAAGTTTGGTC+TGG + chr1_1:37758978-37758997 Msa0021310:intron 55.0%
!! TGTTTGGTGTGGCCCACATG+GGG + chr1_1:37759525-37759544 Msa0021310:intron 55.0%
CTCTTAGACCATCCCCCATG+TGG - chr1_1:37759541-37759560 None:intergenic 55.0%
CACATGGGGGATGGTCTAAG+AGG + chr1_1:37759539-37759558 Msa0021310:intron 55.0%
ACCCCATTCTGGCCCAAAAC+AGG - chr1_1:37760140-37760159 None:intergenic 55.0%
CATTGAAGATGTTGGGGGGG+GGG + chr1_1:37760522-37760541 Msa0021310:intron 55.0%
ATTGAAGATGTTGGGGGGGG+GGG + chr1_1:37760523-37760542 Msa0021310:intron 55.0%
GGGTCCGTGGCTATAATCAC+GGG - chr1_1:37761170-37761189 None:intergenic 55.0%
ATTGTGCAGAGTGGGGAAGC+CGG + chr1_1:37762369-37762388 Msa0021310:intron 55.0%
TCCTGTCCCTAATCCGTGAC+CGG - chr1_1:37762391-37762410 None:intergenic 55.0%
!! ACGGATTAGGGACAGGAGAG+AGG + chr1_1:37762394-37762413 Msa0021310:CDS 55.0%
CAGGAGAGAGGATGAAGCTC+CGG + chr1_1:37762406-37762425 Msa0021310:CDS 55.0%
GAAGCTCCGGCTGAATCAGA+TGG + chr1_1:37762419-37762438 Msa0021310:CDS 55.0%
TATGGGTTCGAAGGAGCCTG+CGG + chr1_1:37764186-37764205 Msa0021310:CDS 55.0%
ATATGCACCCACCTTACGGC+AGG + chr1_1:37764474-37764493 Msa0021310:CDS 55.0%
! CCTTTTCACCTGCCGTAAGG+TGG - chr1_1:37764485-37764504 None:intergenic 55.0%
CCACCTTACGGCAGGTGAAA+AGG + chr1_1:37764482-37764501 Msa0021310:CDS 55.0%
GTGTACGCCTCGCAACCTTT+GGG - chr1_1:37765552-37765571 None:intergenic 55.0%
ATGTGGCAGTCACGGGTCTA+TGG - chr1_1:37765889-37765908 None:intergenic 55.0%
TCTTCAACTAGGGGCGGACC+TGG + chr1_1:37757917-37757936 Msa0021310:intron 60.0%
AAACCGGAAACTCGCCGGAG+AGG + chr1_1:37758858-37758877 Msa0021310:intron 60.0%
AACCGGAAACTCGCCGGAGA+GGG + chr1_1:37758859-37758878 Msa0021310:intron 60.0%
TTCCCTCTCCGGCGAGTTTC+CGG - chr1_1:37758864-37758883 None:intergenic 60.0%
TGTTATCGGCGGAGAGACGG+TGG + chr1_1:37758892-37758911 Msa0021310:intron 60.0%
GATCAGAGCAGATACGGCGG+CGG + chr1_1:37758945-37758964 Msa0021310:intron 60.0%
AGATACGGCGGCGGCATGTA+TGG + chr1_1:37758954-37758973 Msa0021310:intron 60.0%
CGGCATGTATGGCTCGCGAT+CGG + chr1_1:37758965-37758984 Msa0021310:intron 60.0%
!! GTTTGGTGTGGCCCACATGG+GGG + chr1_1:37759526-37759545 Msa0021310:intron 60.0%
TTGAAGATGTTGGGGGGGGG+GGG + chr1_1:37760524-37760543 Msa0021310:intron 60.0%
! GGGAAGCCGGTCACGGATTA+GGG + chr1_1:37762382-37762401 Msa0021310:CDS 60.0%
GAGAGGACCCAAAGGTTGCG+AGG + chr1_1:37765542-37765561 Msa0021310:CDS 60.0%
GGTGTACGCCTCGCAACCTT+TGG - chr1_1:37765553-37765572 None:intergenic 60.0%
TTGCGAGGCGTACACCAGCA+TGG + chr1_1:37765557-37765576 Msa0021310:CDS 60.0%
TTCCCTCTCCGGCGAGCTTC+CGG - chr1_1:37758807-37758826 None:intergenic 65.0%
CTCGCCGGAGAGGGAAGAAG+AGG + chr1_1:37758868-37758887 Msa0021310:intron 65.0%
TGAAGATGTTGGGGGGGGGG+GGG + chr1_1:37760525-37760544 Msa0021310:intron 65.0%
CAGAGTGGGGAAGCCGGTCA+CGG + chr1_1:37762375-37762394 Msa0021310:intron 65.0%
GGGGAAGCCGGTCACGGATT+AGG + chr1_1:37762381-37762400 Msa0021310:CDS 65.0%
!! GCCGGTCACGGATTAGGGAC+AGG + chr1_1:37762387-37762406 Msa0021310:CDS 65.0%
AGACCGGAAGCTCGCCGGAG+AGG + chr1_1:37758801-37758820 Msa0021310:intron 70.0%
GACCGGAAGCTCGCCGGAGA+GGG + chr1_1:37758802-37758821 Msa0021310:intron 70.0%
GGCGGAGAGACGGTGGTGAC+TGG + chr1_1:37758899-37758918 Msa0021310:intron 70.0%
GGTGTGGCCCACATGGGGGA+TGG + chr1_1:37759530-37759549 Msa0021310:intron 70.0%
GAAGATGTTGGGGGGGGGGG+GGG + chr1_1:37760526-37760545 Msa0021310:intron 70.0%
AAGATGTTGGGGGGGGGGGG+GGG + chr1_1:37760527-37760546 Msa0021310:intron 70.0%
AGATGTTGGGGGGGGGGGGG+GGG + chr1_1:37760528-37760547 Msa0021310:intron 75.0%
! GATGTTGGGGGGGGGGGGGG+GGG + chr1_1:37760529-37760548 Msa0021310:intron 80.0%
! ATGTTGGGGGGGGGGGGGGG+GGG + chr1_1:37760530-37760549 Msa0021310:intron 80.0%
! TGTTGGGGGGGGGGGGGGGG+GGG + chr1_1:37760531-37760550 Msa0021310:intron 85.0%
! GTTGGGGGGGGGGGGGGGGG+GGG + chr1_1:37760532-37760551 Msa0021310:intron 90.0%
! TTGGGGGGGGGGGGGGGGGG+GGG + chr1_1:37760533-37760552 Msa0021310:intron 90.0%
! GGGGGGGGGGGGGGGGGGTA+TGG + chr1_1:37760538-37760557 Msa0021310:intron 90.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 37754798 37766490 37754798 ID=Msa0021310;Name=Msa0021310
chr1_1 mRNA 37754798 37766490 37754798 ID=Msa0021310-mRNA-1;Parent=Msa0021310;Name=Msa0021310-mRNA-1;_AED=0.13;_eAED=0.13;_QI=220|1|0.84|1|0.75|0.61|13|430|667
chr1_1 exon 37754798 37755002 37754798 ID=Msa0021310-mRNA-1:exon:11796;Parent=Msa0021310-mRNA-1
chr1_1 exon 37756815 37756847 37756815 ID=Msa0021310-mRNA-1:exon:11797;Parent=Msa0021310-mRNA-1
chr1_1 exon 37761686 37761736 37761686 ID=Msa0021310-mRNA-1:exon:11798;Parent=Msa0021310-mRNA-1
chr1_1 exon 37761982 37762114 37761982 ID=Msa0021310-mRNA-1:exon:11799;Parent=Msa0021310-mRNA-1
chr1_1 exon 37762378 37762440 37762378 ID=Msa0021310-mRNA-1:exon:11800;Parent=Msa0021310-mRNA-1
chr1_1 exon 37762740 37762812 37762740 ID=Msa0021310-mRNA-1:exon:11801;Parent=Msa0021310-mRNA-1
chr1_1 exon 37762908 37763012 37762908 ID=Msa0021310-mRNA-1:exon:11802;Parent=Msa0021310-mRNA-1
chr1_1 exon 37763368 37764274 37763368 ID=Msa0021310-mRNA-1:exon:11803;Parent=Msa0021310-mRNA-1
chr1_1 exon 37764426 37764610 37764426 ID=Msa0021310-mRNA-1:exon:11804;Parent=Msa0021310-mRNA-1
chr1_1 exon 37764909 37765017 37764909 ID=Msa0021310-mRNA-1:exon:11805;Parent=Msa0021310-mRNA-1
chr1_1 exon 37765439 37765578 37765439 ID=Msa0021310-mRNA-1:exon:11806;Parent=Msa0021310-mRNA-1
chr1_1 exon 37765811 37766096 37765811 ID=Msa0021310-mRNA-1:exon:11807;Parent=Msa0021310-mRNA-1
chr1_1 exon 37766127 37766490 37766127 ID=Msa0021310-mRNA-1:exon:11808;Parent=Msa0021310-mRNA-1
chr1_1 five_prime_UTR 37754798 37755002 37754798 ID=Msa0021310-mRNA-1:five_prime_utr;Parent=Msa0021310-mRNA-1
chr1_1 five_prime_UTR 37756815 37756829 37756815 ID=Msa0021310-mRNA-1:five_prime_utr;Parent=Msa0021310-mRNA-1
chr1_1 CDS 37756830 37756847 37756830 ID=Msa0021310-mRNA-1:cds;Parent=Msa0021310-mRNA-1
chr1_1 CDS 37761686 37761736 37761686 ID=Msa0021310-mRNA-1:cds;Parent=Msa0021310-mRNA-1
chr1_1 CDS 37761982 37762114 37761982 ID=Msa0021310-mRNA-1:cds;Parent=Msa0021310-mRNA-1
chr1_1 CDS 37762378 37762440 37762378 ID=Msa0021310-mRNA-1:cds;Parent=Msa0021310-mRNA-1
chr1_1 CDS 37762740 37762812 37762740 ID=Msa0021310-mRNA-1:cds;Parent=Msa0021310-mRNA-1
chr1_1 CDS 37762908 37763012 37762908 ID=Msa0021310-mRNA-1:cds;Parent=Msa0021310-mRNA-1
chr1_1 CDS 37763368 37764274 37763368 ID=Msa0021310-mRNA-1:cds;Parent=Msa0021310-mRNA-1
chr1_1 CDS 37764426 37764610 37764426 ID=Msa0021310-mRNA-1:cds;Parent=Msa0021310-mRNA-1
chr1_1 CDS 37764909 37765017 37764909 ID=Msa0021310-mRNA-1:cds;Parent=Msa0021310-mRNA-1
chr1_1 CDS 37765439 37765578 37765439 ID=Msa0021310-mRNA-1:cds;Parent=Msa0021310-mRNA-1
chr1_1 CDS 37765811 37766030 37765811 ID=Msa0021310-mRNA-1:cds;Parent=Msa0021310-mRNA-1
chr1_1 three_prime_UTR 37766031 37766096 37766031 ID=Msa0021310-mRNA-1:three_prime_utr;Parent=Msa0021310-mRNA-1
chr1_1 three_prime_UTR 37766127 37766490 37766127 ID=Msa0021310-mRNA-1:three_prime_utr;Parent=Msa0021310-mRNA-1
Gene Sequence

>Msa0021310

ATGATCTCTCTTAAGGAGACAGTGATGAAGCAGCAGCAGCAGAAGCACACAGCCAACAAGCAACAACAGAATTTATGGGCAACAATGGTCATGCGCAAATGGCTTAACATTAAAAGGAAGGAGTCTGATGATTACAGCACCGACCCTGATGATGATGATGATGATGATGAGGATGATCCTGAAACTGATTCAGACAATGAAGAGTGGGGAAGCCGGTCACGGATTAGGGACAGGAGAGAGGATGAAGCTCCGGCTGAATCAGATGAATTTCTCCCAGGCTTAAGGAGGCAAAAGTCATTGACTGTAAGGTCTCAATATATAAACAAGAAGGAACTGAGAGTATGTGTTGGGACATGGAATGTTGGAGGAAAACTTCCACCTAATGACTTTGATATTGATGATTGGCTAGACATTAACCATCCTGCTGATATCTATGTCCTTGGTCTTCAAGAGATTGTACCTTTAAACACGAGTAACATTTTTGTTGCTGTAGATACTCGTCCTGTACCGAAATGGGAAAACTTAATTCGAGAAGCTCTGAATAGAGTTCGATCAAAACCTTCAAAGATAAAATCCTTTAGTGATCCTCCATCTCCATCAAAGTTTAAACCATCAGATGATGCACCAGATATAGAAGAAGAAATTCTATTAGAAAGCGATAGTGATATTGGTGAGGAGATTCATCCTTTAGGTGAAGAACATAATTTATTTGGAGTCACAGATAAACCAATCATAGATGAAGCACTGAATATTAGTTTGAAGGATTCAAATGCTTCTGATATAGCTGAGAACGATCTACAGAATCAGTTATCTTATCAAAGAAGGTTGAATAGGCTAAATCATTTCCGCGAGGAAGATTCATCGGAAAACAATGAAACAACTTCTTCTCAACAGATTAGTAAGCTATCTAGAATGATTAATGGGACTGAAAAAGATTCATCGGAAAACAATGAAACGACTTCTTCTCAACAGATTAGTAAGCTATCTAGAATGGTTAGTGGGACTGAAAGAATTGGTTTGAGCTGGCCAGAGCCACCATTACATTTGTTGCCTCAGAAAGTATTGGAGAGACCAACTTCTTTTAAACCGGTTAAATCGTTTAATAAGACAAAGTCATTTAGAGCCTGTGATTCTTTCAAATCAAAAACAGATGCTATAGATTTACTGGCTGATATTGATCTTGAAGCTTTGATGAAGAGGAAAACAAGATCGTCGTATGTGAAGATAGTGAGCAAGCAGATGGTTGGTATTTTCATCACGGTATGGGTTCGAAGGAGCCTGCGGAAACATATTCAGAACATGAAGGTTTCAACTGTTGGTGTTGGTGTTATGGGCTATATTGGTAACAAGGGATCAATATCTGTCAGCATGTCTATTTATCAGACGCTTTTTTGCTTTATATGCACCCACCTTACGGCAGGTGAAAAGGAAGCCGATGAAATCAAACGAAATGCTGATGTTCGTGAAATACATCAGAGGACCCATTTTTATTCACTTTCTGATTTTGGACTTCCCAAAAGTATCTTGGATCATGAAAGAATAATTTGGTTCGGTGATCTGAATTACCGTATCAGCTTGCCATATGATAAAACAAGAGATCTTATCTCAAAAAAGCATTGGTCAAAATTGGTTGAGAGAGACCAGCTTGTGAAAGAATTAGAGAAAGGTGTTTTTGATGGATGGTCAGAAGGTGCGTTAAACTTCCCACCAACCTATAAGTACGAGATTAATTCAGACAAGTACATTGGAGAGGACCCAAAGGTTGCGAGGCGTACACCAGCATGGTGCGATCGTATTCTATCACATGGAAATGGAATGAGATTACTGAGTTACAAAAGGAGTGAACTTAAATTTTCAGACCATAGACCCGTGACTGCCACATATATGGCAGAGGTTGAGGTGTTCAATCCAAAGAAGCTACAGCGAGCACTTAATTACACCGATGCAGAGATCGAAAATGAAGAAGTCATGACAAGTTTCGGCACTTGGAATTTAGCAACATAA
Protein sequence

>Msa0021310

MISLKETVMKQQQQKHTANKQQQNLWATMVMRKWLNIKRKESDDYSTDPDDDDDDDEDDPETDSDNEEWGSRSRIRDRREDEAPAESDEFLPGLRRQKSLTVRSQYINKKELRVCVGTWNVGGKLPPNDFDIDDWLDINHPADIYVLGLQEIVPLNTSNIFVAVDTRPVPKWENLIREALNRVRSKPSKIKSFSDPPSPSKFKPSDDAPDIEEEILLESDSDIGEEIHPLGEEHNLFGVTDKPIIDEALNISLKDSNASDIAENDLQNQLSYQRRLNRLNHFREEDSSENNETTSSQQISKLSRMINGTEKDSSENNETTSSQQISKLSRMVSGTERIGLSWPEPPLHLLPQKVLERPTSFKPVKSFNKTKSFRACDSFKSKTDAIDLLADIDLEALMKRKTRSSYVKIVSKQMVGIFITVWVRRSLRKHIQNMKVSTVGVGVMGYIGNKGSISVSMSIYQTLFCFICTHLTAGEKEADEIKRNADVREIHQRTHFYSLSDFGLPKSILDHERIIWFGDLNYRISLPYDKTRDLISKKHWSKLVERDQLVKELEKGVFDGWSEGALNFPPTYKYEINSDKYIGEDPKVARRTPAWCDRILSHGNGMRLLSYKRSELKFSDHRPVTATYMAEVEVFNPKKLQRALNYTDAEIENEEVMTSFGTWNLAT*