AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0071250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0071250 MtrunA17_Chr1g0176821 83.117 616 48 6 1 574 1 602 0.0 1006
Msa0071250 MtrunA17_Chr7g0267701 53.191 423 133 8 1 378 1 403 1.82e-136 413
Msa0071250 MtrunA17_Chr7g0267701 34.583 240 125 4 336 574 506 714 2.04e-27 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0071250 AT5G06440.3 52.412 311 108 7 1 275 1 307 1.87e-101 315
Msa0071250 AT5G06440.2 52.412 311 108 7 1 275 1 307 1.87e-101 315
Msa0071250 AT5G06440.4 50.629 318 110 7 1 275 1 314 8.94e-99 309
Msa0071250 AT3G11720.1 37.923 443 196 12 1 397 1 410 1.21e-89 287
Msa0071250 AT3G11720.2 37.923 443 196 12 1 397 1 410 1.21e-89 287
Msa0071250 AT5G06440.1 51.986 277 94 6 1 241 1 274 5.22e-89 277
Msa0071250 AT3G11720.3 37.923 443 196 12 1 397 55 464 5.82e-89 286
Msa0071250 AT5G06440.5 54.506 233 72 4 73 275 5 233 1.27e-80 259
Msa0071250 AT5G06440.6 54.505 222 67 4 84 275 1 218 1.17e-76 248
Msa0071250 AT3G11720.4 37.143 350 151 9 84 397 1 317 3.02e-68 228

Find 148 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTCCAATATATCTTTATT+TGG 0.153676 1_2:+42790562 None:intergenic
AGCATCATGGGAACCCTTTC+TGG 0.171527 1_2:-42793005 Msa0071250:CDS
CCAGGTTGGTTCATATTCTT+TGG 0.225748 1_2:-42790180 Msa0071250:CDS
TATGGCTCCTTCAGGTATTC+AGG 0.239648 1_2:-42790290 Msa0071250:intron
TTTGGACAGTGGCGCGATTA+TGG 0.252117 1_2:-42790162 Msa0071250:CDS
TTATAACCACTCAACTTCTT+TGG 0.259077 1_2:+42790008 None:intergenic
TTGTAGGACAATAGCGAATA+TGG 0.275278 1_2:-42792673 Msa0071250:intron
TTGAGTGAGATTGTAGAATT+AGG 0.277561 1_2:-42790895 Msa0071250:CDS
AGCACAATCACCTTAAGTTT+TGG 0.278051 1_2:+42790503 None:intergenic
GGATTTATTTCCTTTAAGTT+TGG 0.290070 1_2:+42790260 None:intergenic
CAGTGTTCGGTTGCTTGTTT+CGG 0.304274 1_2:+42790126 None:intergenic
GGTGAGGATTTCTTGAATAA+TGG 0.311152 1_2:-42789837 Msa0071250:three_prime_UTR
CATGCAAGGGGACCCATCTT+TGG 0.320178 1_2:+42790663 None:intergenic
TCATGTTCAACAAGACAAAA+AGG 0.320529 1_2:+42789593 None:intergenic
ACCAAATGGAGAGACGTTAA+TGG 0.323173 1_2:-42789955 Msa0071250:three_prime_UTR
CCAACTTTCTCATTTCGAAT+TGG 0.326024 1_2:+42790820 None:intergenic
AATTGTTGTTCTTACGAATT+CGG 0.343897 1_2:-42793139 Msa0071250:intron
GTTGGTGCAATTGTACAAAA+AGG 0.347121 1_2:-42790802 Msa0071250:CDS
TGATCGGACTCCCGGCTAAA+TGG 0.349610 1_2:+42789729 None:intergenic
CTATCAGAGCGGAGTCTTGC+CGG 0.360358 1_2:-42790218 Msa0071250:CDS
ACCATTAACGTCTCTCCATT+TGG 0.360433 1_2:+42789954 None:intergenic
TCCATTTCATACAATGTTAG+TGG 0.366187 1_2:-42794245 Msa0071250:CDS
ATATCGATTACATTCTGATA+TGG 0.368450 1_2:-42790701 Msa0071250:CDS
TCCACTAACATTGTATGAAA+TGG 0.368720 1_2:+42794244 None:intergenic
GGTACCAAATAAAGATATAT+TGG 0.374923 1_2:-42790566 Msa0071250:CDS
AGGAATAGATCCAAACTTAA+AGG 0.382257 1_2:-42790270 Msa0071250:CDS
AGAAGAATTCAGCAAGGCCT+TGG 0.384310 1_2:-42791154 Msa0071250:CDS
AGAGTTGGAATCACTTTGTT+GGG 0.386815 1_2:+42790239 None:intergenic
CTAACTTTCTAGATATGTTA+AGG 0.386935 1_2:-42794712 Msa0071250:CDS
ACGAAAGATTGTGCAGTATA+GGG 0.388133 1_2:-42795237 Msa0071250:CDS
GAGGATGATGAGAAAGTAAA+TGG 0.388969 1_2:-42790847 Msa0071250:CDS
AATAGCGAATATGGATATAA+AGG 0.391283 1_2:-42792664 Msa0071250:CDS
CCCATGATGCTCTTCGACTC+AGG 0.391541 1_2:+42793017 None:intergenic
CCTTGATAAACTTTATTTCA+AGG 0.392531 1_2:-42792623 Msa0071250:CDS
CTTCTTCCAATAGTTAAAAC+AGG 0.395022 1_2:-42794314 Msa0071250:intron
CAAGCAACCGAACACTGATT+TGG 0.395540 1_2:-42790120 Msa0071250:CDS
CTCACGACATCCTTCACTTC+AGG 0.396279 1_2:+42792963 None:intergenic
TTGGTTCTGTGCAGAATATA+AGG 0.396321 1_2:-42794768 Msa0071250:intron
GCTTGTTTCGGCATGTTGTT+TGG 0.411877 1_2:+42790138 None:intergenic
CAAAGAACTCAAATATCTTC+CGG 0.413162 1_2:+42789753 None:intergenic
CTAATACATCACAAAATGAT+TGG 0.420944 1_2:-42794664 Msa0071250:CDS
AACGAAAGATTGTGCAGTAT+AGG 0.423682 1_2:-42795238 Msa0071250:CDS
GAAGAATTCAGCAAGGCCTT+GGG 0.429545 1_2:-42791153 Msa0071250:CDS
GTAAGGTATCCTTGTGCAAA+AGG 0.431633 1_2:+42789625 None:intergenic
ATCTCAACATTTGTAAGATC+AGG 0.432552 1_2:+42795188 None:intergenic
CATCAGAAAGAAGTTACTTT+CGG 0.436473 1_2:-42792902 Msa0071250:intron
TCGAGCAGCTTTGCCAAAGA+TGG 0.436494 1_2:-42790676 Msa0071250:CDS
TAGAGTTGGAATCACTTTGT+TGG 0.441452 1_2:+42790238 None:intergenic
TGTAACTTACAAACATCAAC+AGG 0.447445 1_2:+42794205 None:intergenic
GAGAGACGTTAATGGTTAAG+AGG 0.449314 1_2:-42789947 Msa0071250:three_prime_UTR
GGATGTCGTGAGAGTTGATT+TGG 0.451455 1_2:-42792952 Msa0071250:CDS
ATATTCTCTAATCATTGAAA+TGG 0.454965 1_2:+42790720 None:intergenic
TTTCGTGGCCTCTGTCTTCG+AGG 0.463033 1_2:-42793209 Msa0071250:CDS
TATCAGCTCAGATGTCAAAC+AGG 0.464812 1_2:-42790764 Msa0071250:CDS
CTTTCAACAAGGTATTCAGC+AGG 0.465161 1_2:+42791027 None:intergenic
TTTATTTCAAGGCAGCTCAT+TGG 0.469289 1_2:-42792612 Msa0071250:CDS
CCTTGAAATAAAGTTTATCA+AGG 0.469741 1_2:+42792623 None:intergenic
CCAATTCGAAATGAGAAAGT+TGG 0.474583 1_2:-42790820 Msa0071250:CDS
GGAAGAGATTATACAAAGTG+TGG 0.479943 1_2:-42790869 Msa0071250:CDS
ACTCTGGCATCCAAAACTTA+AGG 0.483606 1_2:-42790513 Msa0071250:intron
GAGTTCTTTGACCATTTAGC+CGG 0.486276 1_2:-42789740 Msa0071250:three_prime_UTR
AATGTTAGTGGAAGGCTTTG+TGG 0.487941 1_2:-42794233 Msa0071250:CDS
CCGACATAGTGTGTCAAAAC+CGG 0.492257 1_2:-42789772 Msa0071250:three_prime_UTR
CGGACCTACTGAGGCAAGCC+AGG 0.494719 1_2:-42790198 Msa0071250:CDS
TGTCATCTGAAGACATGTCT+TGG 0.497622 1_2:+42790096 None:intergenic
CAAAGATGGGTCCCCTTGCA+TGG 0.502640 1_2:-42790662 Msa0071250:CDS
TACTAAGCTACTGAGATTTG+TGG 0.509500 1_2:+42789878 None:intergenic
GAAATAAAGTTTATCAAGGA+TGG 0.510256 1_2:+42792627 None:intergenic
TCTTGGACCAAATCAGTGTT+CGG 0.511411 1_2:+42790113 None:intergenic
TAGCCGGGAGTCCGATCACT+TGG 0.514448 1_2:-42789724 Msa0071250:three_prime_UTR
CTGGCTTGCCTCAGTAGGTC+CGG 0.514534 1_2:+42790199 None:intergenic
ACACCAAGTGATCGGACTCC+CGG 0.519062 1_2:+42789721 None:intergenic
TTTCAGGTTTATGTATCTCA+TGG 0.519297 1_2:-42794083 Msa0071250:intron
AAGGGCGGAGACTTAATCTC+TGG 0.520143 1_2:+42789644 None:intergenic
CCTGAGTCGAAGAGCATCAT+GGG 0.525362 1_2:-42793017 Msa0071250:CDS
TTTCATACAATGTTAGTGGA+AGG 0.532311 1_2:-42794241 Msa0071250:CDS
ATTCAAGAAATCCTCACCTA+TGG 0.533621 1_2:+42789842 None:intergenic
CGTCGTCGTTGAAACCAGAA+AGG 0.534938 1_2:+42792991 None:intergenic
TGAGATTGTAGAATTAGGTG+AGG 0.535511 1_2:-42790890 Msa0071250:CDS
AGGAGTACTTCAGATGATCA+TGG 0.539089 1_2:-42794692 Msa0071250:CDS
CCATGATGCTCTTCGACTCA+GGG 0.540019 1_2:+42793018 None:intergenic
TCAAGGCAGCTCATTGGCAA+TGG 0.540578 1_2:-42792606 Msa0071250:CDS
CGAGCAGCTTTGCCAAAGAT+GGG 0.543231 1_2:-42790675 Msa0071250:CDS
ACCAAATAAAGATATATTGG+AGG 0.544818 1_2:-42790563 Msa0071250:CDS
TTCGTGGCCTCTGTCTTCGA+GGG 0.545193 1_2:-42793208 Msa0071250:CDS
AAGAAAGGATGAAGGTTTCG+TGG 0.545994 1_2:-42793224 Msa0071250:intron
TACATCACAAAATGATTGGA+AGG 0.546178 1_2:-42794660 Msa0071250:intron
TACCTTGTTGAAAGTAAACC+AGG 0.546522 1_2:-42791018 Msa0071250:CDS
CCCTGAGTCGAAGAGCATCA+TGG 0.547608 1_2:-42793018 Msa0071250:CDS
GGGAGGCTTTGCTTTGCAGA+AGG 0.548882 1_2:-42792928 Msa0071250:CDS
AGATAGTAGTATACATTACA+TGG 0.552880 1_2:+42789540 None:intergenic
TTGTAAGATCAGGTGAGGCA+AGG 0.553784 1_2:+42795198 None:intergenic
AGACTCCGCTCTGATAGAGT+TGG 0.558018 1_2:+42790224 None:intergenic
TAATGTCATGCCACTGACAA+TGG 0.561994 1_2:-42790947 Msa0071250:CDS
ATGACAAAGTCAAGTCAAGA+AGG 0.562383 1_2:-42790079 Msa0071250:CDS
TTCCAATAGTTAAAACAGGA+TGG 0.564355 1_2:-42794310 Msa0071250:intron
CCAACCTGGCTTGCCTCAGT+AGG 0.565505 1_2:+42790194 None:intergenic
ATCTTTGGCAAAGCTGCTCG+AGG 0.567403 1_2:+42790678 None:intergenic
CACCTGGTTTACTTTCAACA+AGG 0.568099 1_2:+42791016 None:intergenic
TAAGGTATCCTTGTGCAAAA+GGG 0.569231 1_2:+42789626 None:intergenic
GAAGCACGTTCGACACACTC+TGG 0.571822 1_2:-42790529 Msa0071250:CDS
TGTAAGATCAGGTGAGGCAA+GGG 0.572242 1_2:+42795199 None:intergenic
AAAGATGGGTCCCCTTGCAT+GGG 0.574113 1_2:-42790661 Msa0071250:CDS
CACGACTACTAGTGCATCAG+AGG 0.576208 1_2:-42791091 Msa0071250:CDS
CCTACTGAGGCAAGCCAGGT+TGG 0.578292 1_2:-42790194 Msa0071250:CDS
AGTTCTTTGACCATTTAGCC+GGG 0.579921 1_2:-42789739 Msa0071250:three_prime_UTR
AAGAACTACAAATTTGTGCA+TGG 0.581856 1_2:-42789472 Msa0071250:three_prime_UTR
AATGTACCAAAGAAGTTGAG+TGG 0.582780 1_2:-42790014 Msa0071250:CDS
GTCGTGAGAGTTGATTTGGT+GGG 0.584180 1_2:-42792948 Msa0071250:CDS
TGCACAAGGATACCTTACTC+AGG 0.584534 1_2:-42789620 Msa0071250:three_prime_UTR
GTATGAAATGGAGTTCCCTC+CGG 0.586840 1_2:+42794256 None:intergenic
CCAAAGAATATGAACCAACC+TGG 0.590279 1_2:+42790180 None:intergenic
TGGTTTCAGACTTTATCAGA+AGG 0.594007 1_2:-42792586 Msa0071250:intron
TGTTATGTATCGTGAAGGAC+CGG 0.595211 1_2:-42794275 Msa0071250:CDS
CCAAATAAAGATATATTGGA+GGG 0.596929 1_2:-42790562 Msa0071250:CDS
GAGTCTTGCCGGACCTACTG+AGG 0.598835 1_2:-42790207 Msa0071250:CDS
GGTTCATATTCTTTGGACAG+TGG 0.601042 1_2:-42790173 Msa0071250:CDS
TTTCAACAAGGTATTCAGCA+GGG 0.601536 1_2:+42791028 None:intergenic
AAGAATTCAGCAAGGCCTTG+GGG 0.602284 1_2:-42791152 Msa0071250:CDS
CGACGCAATTCCTGAAGTGA+AGG 0.604308 1_2:-42792973 Msa0071250:CDS
GTGAGAGTTGATTTGGTGGG+AGG 0.607591 1_2:-42792945 Msa0071250:CDS
GTCGTCGTTGAAACCAGAAA+GGG 0.613736 1_2:+42792992 None:intergenic
AGATTGTGCAGTATAGGGAG+AGG 0.617001 1_2:-42795232 Msa0071250:CDS
AGAGATTATACAAAGTGTGG+AGG 0.618599 1_2:-42790866 Msa0071250:CDS
TTAGTGGAAGGCTTTGTGGA+CGG 0.620121 1_2:-42794229 Msa0071250:CDS
AACATTTGTAAGATCAGGTG+AGG 0.620685 1_2:+42795193 None:intergenic
TGTCGTGAGAGTTGATTTGG+TGG 0.621107 1_2:-42792949 Msa0071250:CDS
AGCGAATATGGATATAAAGG+TGG 0.622613 1_2:-42792661 Msa0071250:CDS
TAGTGAAATATACTCATCCA+AGG 0.623444 1_2:-42789809 Msa0071250:three_prime_UTR
ATAAAGTTTATCAAGGATGG+AGG 0.627020 1_2:+42792630 None:intergenic
TTTCGTGTTATGTATCGTGA+AGG 0.628433 1_2:-42794280 Msa0071250:CDS
GGCGGAGACTTAATCTCTGG+AGG 0.628667 1_2:+42789647 None:intergenic
GCATCAGAGGTTGCAAATAG+CGG 0.632157 1_2:-42791078 Msa0071250:CDS
TTGCGAATTCTAGCATACAA+TGG 0.633231 1_2:+42791126 None:intergenic
ATTGTATGCTAGAATTCGCA+AGG 0.634051 1_2:-42791124 Msa0071250:CDS
ACGGTTGCATCCATTGTCAG+TGG 0.634936 1_2:+42790937 None:intergenic
GTACTTCAGATGATCATGGA+AGG 0.636905 1_2:-42794688 Msa0071250:CDS
GGTATCCTTGTGCAAAAGGG+CGG 0.643583 1_2:+42789629 None:intergenic
GGCTATAGAAACATTAGACA+AGG 0.647239 1_2:-42790743 Msa0071250:CDS
TATGTATCGTGAAGGACCGG+AGG 0.650001 1_2:-42794272 Msa0071250:CDS
ACTAACACCATTGTGACTCG+AGG 0.660623 1_2:-42790047 Msa0071250:CDS
AGACATACCTCGAGTCACAA+TGG 0.669331 1_2:+42790040 None:intergenic
ATGTATCGTGAAGGACCGGA+GGG 0.674262 1_2:-42794271 Msa0071250:CDS
AGAATTCAGCAAGGCCTTGG+GGG 0.674619 1_2:-42791151 Msa0071250:CDS
ACAGCTTCCCTCGAAGACAG+AGG 0.692663 1_2:+42793201 None:intergenic
CTTGTTGAAAGTAAACCAGG+TGG 0.713962 1_2:-42791015 Msa0071250:CDS
TGATAAAGAAGAATTCAGCA+AGG 0.714264 1_2:-42791160 Msa0071250:CDS
TGATTCCAACTCTATCAGAG+CGG 0.775218 1_2:-42790229 Msa0071250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAACATTCTTTTATTTATTT+TGG - chr1_2:42789583-42789602 Msa0071250:three_prime_UTR 10.0%
!! AATAACGATAAAAATGTTAA+TGG + chr1_2:42790711-42790730 None:intergenic 15.0%
!!! TTCAATAATTGAAATTTTGT+AGG - chr1_2:42791996-42792015 Msa0071250:intron 15.0%
!!! TTTTTTTATGTATAAATCTC+TGG - chr1_2:42792162-42792181 Msa0071250:intron 15.0%
!! ATTAGACATAATTTATCATA+AGG + chr1_2:42792491-42792510 None:intergenic 15.0%
!! ATGAAAAATATTTGTCTATA+AGG + chr1_2:42794277-42794296 None:intergenic 15.0%
!! ATTGATGTTATATATTTAGA+TGG - chr1_2:42794348-42794367 Msa0071250:intron 15.0%
!! TATAAAAAATATATGTGCTT+TGG - chr1_2:42794695-42794714 Msa0071250:CDS 15.0%
!!! TGTTTTACTTATTGTATGTT+TGG - chr1_2:42789898-42789917 Msa0071250:three_prime_UTR 20.0%
!! TACATATGTAAGAAACAAAA+CGG + chr1_2:42790107-42790126 None:intergenic 20.0%
!! AATAGTATACAGAAAGTTAA+AGG + chr1_2:42790669-42790688 None:intergenic 20.0%
!! TCGTTATTAATTTATGCATA+AGG - chr1_2:42790723-42790742 Msa0071250:CDS 20.0%
!! TAAGTAACTTTATTGCTATA+AGG - chr1_2:42790919-42790938 Msa0071250:CDS 20.0%
!! AAAAATGAAAACCTTCAAAA+CGG + chr1_2:42791414-42791433 None:intergenic 20.0%
!! TACTTAAACATAATGACATT+AGG - chr1_2:42791819-42791838 Msa0071250:intron 20.0%
!! ACTTAAACATAATGACATTA+GGG - chr1_2:42791820-42791839 Msa0071250:intron 20.0%
!!! ATAAAAGTTCATTTTCTTAG+AGG + chr1_2:42791964-42791983 None:intergenic 20.0%
!! AAAGTTAAAAGCAAATGTAA+TGG - chr1_2:42792227-42792246 Msa0071250:intron 20.0%
!! TAGATAATTAAAGAATCCTT+GGG + chr1_2:42792295-42792314 None:intergenic 20.0%
!! ATAGATAATTAAAGAATCCT+TGG + chr1_2:42792296-42792315 None:intergenic 20.0%
!!! TAGTTTTTTTGTTTGTTAGA+TGG - chr1_2:42792346-42792365 Msa0071250:intron 20.0%
!! TAAATTCCAAATCTTGTTAA+TGG - chr1_2:42792521-42792540 Msa0071250:intron 20.0%
!!! TTAGCCTATAGTTTTTTTTT+TGG - chr1_2:42792545-42792564 Msa0071250:intron 20.0%
!!! ATCTCTAAAGTTTAACTATT+AGG - chr1_2:42792577-42792596 Msa0071250:intron 20.0%
!! AATTTACCATTCAATCTTAA+AGG + chr1_2:42793051-42793070 None:intergenic 20.0%
!! ATATATAGAAAATGACATGA+AGG + chr1_2:42793151-42793170 None:intergenic 20.0%
!! GAGTATAAGAAATATAAGTT+TGG + chr1_2:42793261-42793280 None:intergenic 20.0%
!! TATATGAGCATAATTGAAAT+AGG + chr1_2:42793406-42793425 None:intergenic 20.0%
!! ATATTCTCTAATCATTGAAA+TGG + chr1_2:42793968-42793987 None:intergenic 20.0%
!!! CAAATATTTTTCATTCCATA+TGG - chr1_2:42794283-42794302 Msa0071250:CDS 20.0%
!!! AAAGAAGATATGTTATTTTG+AGG - chr1_2:42794766-42794785 Msa0071250:intron 20.0%
! TGTCTTCTGTTAGTAATTTA+TGG - chr1_2:42789675-42789694 Msa0071250:three_prime_UTR 25.0%
!! TGTGTCTTTTATAGATAGTT+TGG + chr1_2:42789740-42789759 None:intergenic 25.0%
!! GTGTCTTTTGTTAATTAACA+TGG + chr1_2:42789771-42789790 None:intergenic 25.0%
!!! TTTGTAGTTTTGATACATTC+AGG - chr1_2:42789804-42789823 Msa0071250:three_prime_UTR 25.0%
!!! TTGTAGTTTTGATACATTCA+GGG - chr1_2:42789805-42789824 Msa0071250:three_prime_UTR 25.0%
!!! TTACAGTTCTGAAATCATTT+AGG - chr1_2:42789829-42789848 Msa0071250:three_prime_UTR 25.0%
! CTAACTTTCTAGATATGTTA+AGG - chr1_2:42789973-42789992 Msa0071250:exon 25.0%
! CTAATACATCACAAAATGAT+TGG - chr1_2:42790021-42790040 Msa0071250:CDS 25.0%
! ATTAGACACACAAATCAAAA+TGG + chr1_2:42790155-42790174 None:intergenic 25.0%
! CTCTATTGTGTAAAATTCAA+TGG - chr1_2:42790250-42790269 Msa0071250:CDS 25.0%
! GATTGCAGAAAATCAAATAT+CGG + chr1_2:42790322-42790341 None:intergenic 25.0%
!!! GAGTTATTTTCATCATTTTC+AGG - chr1_2:42790586-42790605 Msa0071250:CDS 25.0%
! AGACTTCTCTTTACAAAAAA+TGG - chr1_2:42790626-42790645 Msa0071250:CDS 25.0%
! CAAGGTATAAAATAACTTTC+AGG + chr1_2:42790883-42790902 None:intergenic 25.0%
!!! CTGAAAGTTATTTTATACCT+TGG - chr1_2:42790881-42790900 Msa0071250:CDS 25.0%
! ATAAAGTTACTTAGACTCAA+AGG + chr1_2:42790912-42790931 None:intergenic 25.0%
! ATTAAACTGTTTATCCAAAG+AGG + chr1_2:42790946-42790965 None:intergenic 25.0%
!!! CATGATAAGATTTTGAAAGT+AGG + chr1_2:42791301-42791320 None:intergenic 25.0%
! AAAATGAAAACCTTCAAAAC+GGG + chr1_2:42791413-42791432 None:intergenic 25.0%
!!! TTTGATTTTGCTCTGAATTT+TGG - chr1_2:42791438-42791457 Msa0071250:intron 25.0%
!! AATTGTTGTTCTTACGAATT+CGG - chr1_2:42791546-42791565 Msa0071250:intron 25.0%
! AATTTACTTGAATTGAGTGA+TGG - chr1_2:42791863-42791882 Msa0071250:intron 25.0%
! ACATGCAATGAAAAATGAAA+AGG - chr1_2:42791936-42791955 Msa0071250:intron 25.0%
! AATAGCGAATATGGATATAA+AGG - chr1_2:42792021-42792040 Msa0071250:intron 25.0%
! GAAATAAAGTTTATCAAGGA+TGG + chr1_2:42792061-42792080 None:intergenic 25.0%
! CCTTGAAATAAAGTTTATCA+AGG + chr1_2:42792065-42792084 None:intergenic 25.0%
!! CCTTGATAAACTTTATTTCA+AGG - chr1_2:42792062-42792081 Msa0071250:intron 25.0%
! AGATAATTAAAGAATCCTTG+GGG + chr1_2:42792294-42792313 None:intergenic 25.0%
! GAAAGATTACAAGGAAAATA+AGG - chr1_2:42792372-42792391 Msa0071250:intron 25.0%
! GAGACCAAAAAAAAAACTAT+AGG + chr1_2:42792552-42792571 None:intergenic 25.0%
! GCATATATGGATAAAATCTT+AGG + chr1_2:42792640-42792659 None:intergenic 25.0%
!!! AATCTTGTTTTAGATGGTTT+AGG + chr1_2:42792662-42792681 None:intergenic 25.0%
!!! TGGTAAAATCTTGTTTTAGA+TGG + chr1_2:42792668-42792687 None:intergenic 25.0%
! TATTCATCTTACTTTCTTGT+TGG - chr1_2:42792761-42792780 Msa0071250:intron 25.0%
! TATATGTTAATCAAGTAGTC+AGG + chr1_2:42792983-42793002 None:intergenic 25.0%
! TATAGTCACATATAACATTG+TGG - chr1_2:42792999-42793018 Msa0071250:CDS 25.0%
! ATAGTCACATATAACATTGT+GGG - chr1_2:42793000-42793019 Msa0071250:CDS 25.0%
!!! AACTTTCCTTTAAGATTGAA+TGG - chr1_2:42793042-42793061 Msa0071250:intron 25.0%
! TATCATGGTTTAAGTATCTT+AGG + chr1_2:42793175-42793194 None:intergenic 25.0%
! TGTAACTTAGAAGTGAAAAT+TGG + chr1_2:42793222-42793241 None:intergenic 25.0%
! ATAAGAAATATAAGTTTGGC+AGG + chr1_2:42793257-42793276 None:intergenic 25.0%
! ATGAAAGTCATATACTTACT+AGG - chr1_2:42793298-42793317 Msa0071250:intron 25.0%
! CACAACCTATAATATTATCA+GGG + chr1_2:42793488-42793507 None:intergenic 25.0%
!! ATATCGATTACATTCTGATA+TGG - chr1_2:42793984-42794003 Msa0071250:intron 25.0%
! TAAACCTTGTGATAAAAATG+AGG - chr1_2:42794086-42794105 Msa0071250:intron 25.0%
! GGTACCAAATAAAGATATAT+TGG - chr1_2:42794119-42794138 Msa0071250:intron 25.0%
! ACCAAATAAAGATATATTGG+AGG - chr1_2:42794122-42794141 Msa0071250:intron 25.0%
! CCAAATAAAGATATATTGGA+GGG - chr1_2:42794123-42794142 Msa0071250:intron 25.0%
! GTAACGAAGATCTATAAAAA+AGG + chr1_2:42795019-42795038 None:intergenic 25.0%
! ATGGTTAGCAGAAAAATAAA+TGG + chr1_2:42795129-42795148 None:intergenic 25.0%
! AGATAGTAGTATACATTACA+TGG + chr1_2:42795148-42795167 None:intergenic 25.0%
ATCTCAACATTTGTAAGATC+AGG + chr1_2:42789500-42789519 None:intergenic 30.0%
TCATCTTCTAATTCTGATGA+TGG + chr1_2:42789554-42789573 None:intergenic 30.0%
TCATCAGAATTAGAAGATGA+AGG - chr1_2:42789554-42789573 Msa0071250:three_prime_UTR 30.0%
TCTAACCATATGATTCAGTT+TGG + chr1_2:42789702-42789721 None:intergenic 30.0%
TACATCACAAAATGATTGGA+AGG - chr1_2:42790025-42790044 Msa0071250:CDS 30.0%
!! TTTACACAATAGAGCATTGT+TGG + chr1_2:42790244-42790263 None:intergenic 30.0%
CTTCTTCCAATAGTTAAAAC+AGG - chr1_2:42790371-42790390 Msa0071250:intron 30.0%
TTCCAATAGTTAAAACAGGA+TGG - chr1_2:42790375-42790394 Msa0071250:intron 30.0%
TCCATTTCATACAATGTTAG+TGG - chr1_2:42790440-42790459 Msa0071250:intron 30.0%
TCCACTAACATTGTATGAAA+TGG + chr1_2:42790444-42790463 None:intergenic 30.0%
TTTCATACAATGTTAGTGGA+AGG - chr1_2:42790444-42790463 Msa0071250:intron 30.0%
TGTAACTTACAAACATCAAC+AGG + chr1_2:42790483-42790502 None:intergenic 30.0%
! GTCTGTAGTTTGTCAATAAA+AGG + chr1_2:42790534-42790553 None:intergenic 30.0%
!! GCGAGTTGATATCAATAATA+CGG + chr1_2:42790556-42790575 None:intergenic 30.0%
!! TTTCAGGTTTATGTATCTCA+TGG - chr1_2:42790602-42790621 Msa0071250:CDS 30.0%
!!! TTTGCTGTTTTTGTTTTCTG+TGG - chr1_2:42790856-42790875 Msa0071250:CDS 30.0%
TCAAATAAGTCAATCCAAAC+AGG - chr1_2:42791200-42791219 Msa0071250:intron 30.0%
!!! TTACATTTTTAGTGCCTGTT+TGG + chr1_2:42791217-42791236 None:intergenic 30.0%
CTATATGAACAGTGTTAAAC+AGG + chr1_2:42791259-42791278 None:intergenic 30.0%
CTGTTTAACACTGTTCATAT+AGG - chr1_2:42791257-42791276 Msa0071250:intron 30.0%
TTTAACACTGTTCATATAGG+TGG - chr1_2:42791260-42791279 Msa0071250:intron 30.0%
ATCATGTGAATGTTTACAGA+AGG - chr1_2:42791315-42791334 Msa0071250:intron 30.0%
!!! GTGATAATTTTAGTTAACGC+TGG + chr1_2:42791382-42791401 None:intergenic 30.0%
!! AATTTTGGAAGAAAGGATGA+AGG - chr1_2:42791453-42791472 Msa0071250:intron 30.0%
! CATCAGAAAGAAGTTACTTT+CGG - chr1_2:42791783-42791802 Msa0071250:intron 30.0%
ATAAAGTTTATCAAGGATGG+AGG + chr1_2:42792058-42792077 None:intergenic 30.0%
ATGCATCTAGTGTTTAATCT+CGG - chr1_2:42792185-42792204 Msa0071250:intron 30.0%
AGATGGAATGAAAGATTACA+AGG - chr1_2:42792363-42792382 Msa0071250:intron 30.0%
!! TCGATTTGCTGATTTGTTTA+AGG + chr1_2:42792409-42792428 None:intergenic 30.0%
TAGTGTCGTAAAAAATGCTT+TGG + chr1_2:42792463-42792482 None:intergenic 30.0%
GCTAAACCATTAACAAGATT+TGG + chr1_2:42792530-42792549 None:intergenic 30.0%
AATCTTAGGAATCACTGATA+AGG + chr1_2:42792626-42792645 None:intergenic 30.0%
TTAGATGGTTTAGGCATATA+TGG + chr1_2:42792653-42792672 None:intergenic 30.0%
! TTTACCATATTTTCCGCAAT+TGG - chr1_2:42792681-42792700 Msa0071250:intron 30.0%
ACATTGAAATGAACCAATTG+CGG + chr1_2:42792697-42792716 None:intergenic 30.0%
! ATTGGTTCATTTCAATGTTG+TGG - chr1_2:42792699-42792718 Msa0071250:intron 30.0%
TTGGTTCATTTCAATGTTGT+GGG - chr1_2:42792700-42792719 Msa0071250:intron 30.0%
AGAATGATATGACAGATGAA+TGG + chr1_2:42792727-42792746 None:intergenic 30.0%
GAAACATGTGACAAAATGTT+GGG + chr1_2:42792797-42792816 None:intergenic 30.0%
AGAAACATGTGACAAAATGT+TGG + chr1_2:42792798-42792817 None:intergenic 30.0%
CATACAACTTACAAGTATCA+TGG + chr1_2:42793190-42793209 None:intergenic 30.0%
CTTCATCATGCTAATTAACA+TGG - chr1_2:42793326-42793345 Msa0071250:intron 30.0%
ACCAACCCTGATAATATTAT+AGG - chr1_2:42793480-42793499 Msa0071250:intron 30.0%
ACCTATAATATTATCAGGGT+TGG + chr1_2:42793484-42793503 None:intergenic 30.0%
CCACAACCTATAATATTATC+AGG + chr1_2:42793489-42793508 None:intergenic 30.0%
CCTGATAATATTATAGGTTG+TGG - chr1_2:42793486-42793505 Msa0071250:intron 30.0%
TGATAAAGAAGAATTCAGCA+AGG - chr1_2:42793525-42793544 Msa0071250:intron 30.0%
TTGAGTGAGATTGTAGAATT+AGG - chr1_2:42793790-42793809 Msa0071250:intron 30.0%
!! TATCTATTTTTCCCATGCAA+GGG + chr1_2:42794038-42794057 None:intergenic 30.0%
!! CTAACCTCATTTTTATCACA+AGG + chr1_2:42794093-42794112 None:intergenic 30.0%
TAAAAATGAGGTTAGAGTTG+AGG - chr1_2:42794098-42794117 Msa0071250:intron 30.0%
CCCTCCAATATATCTTTATT+TGG + chr1_2:42794126-42794145 None:intergenic 30.0%
TATAACCTTTAGCCATTCTT+AGG + chr1_2:42794214-42794233 None:intergenic 30.0%
TTATTTCGAAACTAGCCATA+TGG + chr1_2:42794301-42794320 None:intergenic 30.0%
TTATAACCACTCAACTTCTT+TGG + chr1_2:42794680-42794699 None:intergenic 30.0%
TAGTGAAATATACTCATCCA+AGG - chr1_2:42794876-42794895 Msa0071250:intron 30.0%
CAAAGAACTCAAATATCTTC+CGG + chr1_2:42794935-42794954 None:intergenic 30.0%
AGAAAAACATCTATTGAGAG+CGG - chr1_2:42794989-42795008 Msa0071250:intron 30.0%
TCATGTTCAACAAGACAAAA+AGG + chr1_2:42795095-42795114 None:intergenic 30.0%
AAGAACTACAAATTTGTGCA+TGG - chr1_2:42795213-42795232 Msa0071250:CDS 30.0%
AACGAAAGATTGTGCAGTAT+AGG - chr1_2:42789447-42789466 Msa0071250:three_prime_UTR 35.0%
ACGAAAGATTGTGCAGTATA+GGG - chr1_2:42789448-42789467 Msa0071250:three_prime_UTR 35.0%
AACATTTGTAAGATCAGGTG+AGG + chr1_2:42789495-42789514 None:intergenic 35.0%
!! CTTCTAATTCTGATGATGGT+AGG + chr1_2:42789550-42789569 None:intergenic 35.0%
TCAGAATTAGAAGATGAAGG+TGG - chr1_2:42789557-42789576 Msa0071250:three_prime_UTR 35.0%
!!! TTTTGGTGCTTAAATGTGTG+AGG - chr1_2:42789600-42789619 Msa0071250:three_prime_UTR 35.0%
TTACTAACAGAAGACAACTC+AGG + chr1_2:42789671-42789690 None:intergenic 35.0%
ATGGACCAAACTGAATCATA+TGG - chr1_2:42789694-42789713 Msa0071250:three_prime_UTR 35.0%
ATCATTTAGGAAGAGTTCTG+TGG - chr1_2:42789842-42789861 Msa0071250:three_prime_UTR 35.0%
!! TTGGTTCTGTGCAGAATATA+AGG - chr1_2:42789917-42789936 Msa0071250:three_prime_UTR 35.0%
CACACAAATCAAAATGGTCT+GGG + chr1_2:42790149-42790168 None:intergenic 35.0%
ACACACAAATCAAAATGGTC+TGG + chr1_2:42790150-42790169 None:intergenic 35.0%
! TTGCAATTGACGTACCTTTT+TGG - chr1_2:42790205-42790224 Msa0071250:CDS 35.0%
TTTCGTGTTATGTATCGTGA+AGG - chr1_2:42790405-42790424 Msa0071250:intron 35.0%
TATTGCTATAAGGTCCTCTT+TGG - chr1_2:42790929-42790948 Msa0071250:CDS 35.0%
AAAGTAGGAATTGTAGACTG+AGG + chr1_2:42791286-42791305 None:intergenic 35.0%
! ACTTTTCAATCCCGTTTTGA+AGG - chr1_2:42791400-42791419 Msa0071250:intron 35.0%
!! TGCTCTGAATTTTGGAAGAA+AGG - chr1_2:42791446-42791465 Msa0071250:intron 35.0%
!! AGTTACTTTCGGTGAGTTTT+AGG - chr1_2:42791794-42791813 Msa0071250:intron 35.0%
TTGTAGGACAATAGCGAATA+TGG - chr1_2:42792012-42792031 Msa0071250:intron 35.0%
AGCGAATATGGATATAAAGG+TGG - chr1_2:42792024-42792043 Msa0071250:intron 35.0%
TTTATTTCAAGGCAGCTCAT+TGG - chr1_2:42792073-42792092 Msa0071250:intron 35.0%
TGGTTTCAGACTTTATCAGA+AGG - chr1_2:42792099-42792118 Msa0071250:intron 35.0%
TAATTAAAGAATCCTTGGGG+AGG + chr1_2:42792291-42792310 None:intergenic 35.0%
TTAGGAATCACTGATAAGGA+AGG + chr1_2:42792622-42792641 None:intergenic 35.0%
TGAACCAATTGCGGAAAATA+TGG + chr1_2:42792688-42792707 None:intergenic 35.0%
ATCTTAGCTGGAACAATGTT+TGG + chr1_2:42792901-42792920 None:intergenic 35.0%
TTCCAGCTAAGATTCCAAAT+CGG - chr1_2:42792908-42792927 Msa0071250:CDS 35.0%
!! AATGCTTCTGGAATAACTTG+TGG + chr1_2:42793078-42793097 None:intergenic 35.0%
ATGAAATGGACAAATGCTTC+TGG + chr1_2:42793090-42793109 None:intergenic 35.0%
TTCAGATAGAGTGGATGAAA+TGG + chr1_2:42793104-42793123 None:intergenic 35.0%
ATCACAAGATTCAGATAGAG+TGG + chr1_2:42793113-42793132 None:intergenic 35.0%
GAAAATGACATGAAGGTAGA+GGG + chr1_2:42793144-42793163 None:intergenic 35.0%
AGAAAATGACATGAAGGTAG+AGG + chr1_2:42793145-42793164 None:intergenic 35.0%
AGAAATATAAGTTTGGCAGG+AGG + chr1_2:42793254-42793273 None:intergenic 35.0%
CCAGAGTAAATACTCAAAGT+TGG + chr1_2:42793369-42793388 None:intergenic 35.0%
CCAACTTTGAGTATTTACTC+TGG - chr1_2:42793366-42793385 Msa0071250:intron 35.0%
TTGCGAATTCTAGCATACAA+TGG + chr1_2:42793562-42793581 None:intergenic 35.0%
ATTGTATGCTAGAATTCGCA+AGG - chr1_2:42793561-42793580 Msa0071250:intron 35.0%
! TTTCAACAAGGTATTCAGCA+GGG + chr1_2:42793660-42793679 None:intergenic 35.0%
TACCTTGTTGAAAGTAAACC+AGG - chr1_2:42793667-42793686 Msa0071250:intron 35.0%
AGAAAAAGATGCATCTGAAG+AGG - chr1_2:42793693-42793712 Msa0071250:intron 35.0%
!!! TGCTTTGCTATTTTCTCGTA+CGG + chr1_2:42793770-42793789 None:intergenic 35.0%
TGAGATTGTAGAATTAGGTG+AGG - chr1_2:42793795-42793814 Msa0071250:intron 35.0%
GGAAGAGATTATACAAAGTG+TGG - chr1_2:42793816-42793835 Msa0071250:intron 35.0%
AGAGATTATACAAAGTGTGG+AGG - chr1_2:42793819-42793838 Msa0071250:intron 35.0%
GAGGATGATGAGAAAGTAAA+TGG - chr1_2:42793838-42793857 Msa0071250:intron 35.0%
CCAACTTTCTCATTTCGAAT+TGG + chr1_2:42793868-42793887 None:intergenic 35.0%
CCAATTCGAAATGAGAAAGT+TGG - chr1_2:42793865-42793884 Msa0071250:intron 35.0%
GTTGGTGCAATTGTACAAAA+AGG - chr1_2:42793883-42793902 Msa0071250:intron 35.0%
CAATTGTACAAAAAGGATCG+AGG - chr1_2:42793890-42793909 Msa0071250:intron 35.0%
GGCTATAGAAACATTAGACA+AGG - chr1_2:42793942-42793961 Msa0071250:intron 35.0%
!! ATCTATTTTTCCCATGCAAG+GGG + chr1_2:42794037-42794056 None:intergenic 35.0%
!! CTATCTATTTTTCCCATGCA+AGG + chr1_2:42794039-42794058 None:intergenic 35.0%
! AGCACAATCACCTTAAGTTT+TGG + chr1_2:42794185-42794204 None:intergenic 35.0%
!! TGTGCTACTTATCCTAAGAA+TGG - chr1_2:42794199-42794218 Msa0071250:intron 35.0%
CTTATCCTAAGAATGGCTAA+AGG - chr1_2:42794206-42794225 Msa0071250:intron 35.0%
!! TTTACTTTTATGGCTCCTTC+AGG - chr1_2:42794387-42794406 Msa0071250:intron 35.0%
ATCTATTCCTGAATACCTGA+AGG + chr1_2:42794405-42794424 None:intergenic 35.0%
AGAGTTGGAATCACTTTGTT+GGG + chr1_2:42794449-42794468 None:intergenic 35.0%
TAGAGTTGGAATCACTTTGT+TGG + chr1_2:42794450-42794469 None:intergenic 35.0%
ATGACAAAGTCAAGTCAAGA+AGG - chr1_2:42794606-42794625 Msa0071250:intron 35.0%
AATGTACCAAAGAAGTTGAG+TGG - chr1_2:42794671-42794690 Msa0071250:CDS 35.0%
! GGTTTTCTGCATTAACCAAA+TGG - chr1_2:42794716-42794735 Msa0071250:CDS 35.0%
TACTAAGCTACTGAGATTTG+TGG + chr1_2:42794810-42794829 None:intergenic 35.0%
! GTACACGTTTTGTATACCAT+AGG - chr1_2:42794827-42794846 Msa0071250:intron 35.0%
ATTCAAGAAATCCTCACCTA+TGG + chr1_2:42794846-42794865 None:intergenic 35.0%
GGTGAGGATTTCTTGAATAA+TGG - chr1_2:42794848-42794867 Msa0071250:intron 35.0%
CGGTTAAAAAAAGAGAACCT+TGG + chr1_2:42794896-42794915 None:intergenic 35.0%
! TTTTCTGTACACCAAGTGAT+CGG + chr1_2:42794975-42794994 None:intergenic 35.0%
! TAAGGTATCCTTGTGCAAAA+GGG + chr1_2:42795062-42795081 None:intergenic 35.0%
GAATTAGAAGATGAAGGTGG+TGG - chr1_2:42789560-42789579 Msa0071250:three_prime_UTR 40.0%
!! AGGAGTACTTCAGATGATCA+TGG - chr1_2:42789993-42790012 Msa0071250:CDS 40.0%
GTACTTCAGATGATCATGGA+AGG - chr1_2:42789997-42790016 Msa0071250:CDS 40.0%
AAGGTCTGTTATTCACTCTC+TGG - chr1_2:42790044-42790063 Msa0071250:CDS 40.0%
! TGGTCTGGGATCTAAACTAA+TGG + chr1_2:42790135-42790154 None:intergenic 40.0%
GACAGAAATCACAGCCAAAA+AGG + chr1_2:42790222-42790241 None:intergenic 40.0%
ACCTGATTCTGTCAAGCTTT+AGG - chr1_2:42790293-42790312 Msa0071250:intron 40.0%
TCCTAAAGCTTGACAGAATC+AGG + chr1_2:42790297-42790316 None:intergenic 40.0%
!!! CGCCATCCTGTTTTAACTAT+TGG + chr1_2:42790380-42790399 None:intergenic 40.0%
TGTTATGTATCGTGAAGGAC+CGG - chr1_2:42790410-42790429 Msa0071250:intron 40.0%
AATGTTAGTGGAAGGCTTTG+TGG - chr1_2:42790452-42790471 Msa0071250:intron 40.0%
!! TAGACTCAAAGGCATTTCCA+AGG + chr1_2:42790901-42790920 None:intergenic 40.0%
AAGCTATCCTTGAGAGCTTA+CGG - chr1_2:42791085-42791104 Msa0071250:CDS 40.0%
CTTATTTCCGTAAGCTCTCA+AGG + chr1_2:42791095-42791114 None:intergenic 40.0%
TGTTTACAGAAGGTCCAGAT+TGG - chr1_2:42791325-42791344 Msa0071250:intron 40.0%
GTTTACAGAAGGTCCAGATT+GGG - chr1_2:42791326-42791345 Msa0071250:intron 40.0%
TTTACAGAAGGTCCAGATTG+GGG - chr1_2:42791327-42791346 Msa0071250:intron 40.0%
GTGATATTTGTTCCCCAATC+TGG + chr1_2:42791342-42791361 None:intergenic 40.0%
GGGAACAAATATCACTAGTG+AGG - chr1_2:42791347-42791366 Msa0071250:intron 40.0%
AAGAAAGGATGAAGGTTTCG+TGG - chr1_2:42791461-42791480 Msa0071250:intron 40.0%
TCTGTGCTTGATTTACTCTC+AGG - chr1_2:42791643-42791662 Msa0071250:intron 40.0%
TAATCCGGAGTTCATCCTAA+AGG - chr1_2:42792861-42792880 Msa0071250:intron 40.0%
!! GTCAGACTTAACTTGCCTTT+AGG + chr1_2:42792879-42792898 None:intergenic 40.0%
!! ATCCGATTTGGAATCTTAGC+TGG + chr1_2:42792913-42792932 None:intergenic 40.0%
GGGTTAATGAGCTTCAGTTA+AGG + chr1_2:42792953-42792972 None:intergenic 40.0%
! CTTTCAACAAGGTATTCAGC+AGG + chr1_2:42793661-42793680 None:intergenic 40.0%
CACCTGGTTTACTTTCAACA+AGG + chr1_2:42793672-42793691 None:intergenic 40.0%
CTTGTTGAAAGTAAACCAGG+TGG - chr1_2:42793670-42793689 Msa0071250:intron 40.0%
TAATGTCATGCCACTGACAA+TGG - chr1_2:42793738-42793757 Msa0071250:intron 40.0%
TATCAGCTCAGATGTCAAAC+AGG - chr1_2:42793921-42793940 Msa0071250:intron 40.0%
ACTCTGGCATCCAAAACTTA+AGG - chr1_2:42794172-42794191 Msa0071250:intron 40.0%
TGATTCCAACTCTATCAGAG+CGG - chr1_2:42794456-42794475 Msa0071250:intron 40.0%
CCAAAGAATATGAACCAACC+TGG + chr1_2:42794508-42794527 None:intergenic 40.0%
!! CCAGGTTGGTTCATATTCTT+TGG - chr1_2:42794505-42794524 Msa0071250:intron 40.0%
GGTTCATATTCTTTGGACAG+TGG - chr1_2:42794512-42794531 Msa0071250:intron 40.0%
TCTTGGACCAAATCAGTGTT+CGG + chr1_2:42794575-42794594 None:intergenic 40.0%
TGTCATCTGAAGACATGTCT+TGG + chr1_2:42794592-42794611 None:intergenic 40.0%
ACCAAATGGAGAGACGTTAA+TGG - chr1_2:42794730-42794749 Msa0071250:CDS 40.0%
ACCATTAACGTCTCTCCATT+TGG + chr1_2:42794734-42794753 None:intergenic 40.0%
GAGAGACGTTAATGGTTAAG+AGG - chr1_2:42794738-42794757 Msa0071250:CDS 40.0%
! CGTTTTGTATACCATAGGTG+AGG - chr1_2:42794832-42794851 Msa0071250:intron 40.0%
GAGTTCTTTGACCATTTAGC+CGG - chr1_2:42794945-42794964 Msa0071250:intron 40.0%
AGTTCTTTGACCATTTAGCC+GGG - chr1_2:42794946-42794965 Msa0071250:intron 40.0%
! GTAAGGTATCCTTGTGCAAA+AGG + chr1_2:42795063-42795082 None:intergenic 40.0%
AGATTGTGCAGTATAGGGAG+AGG - chr1_2:42789453-42789472 Msa0071250:three_prime_UTR 45.0%
TGTAAGATCAGGTGAGGCAA+GGG + chr1_2:42789489-42789508 None:intergenic 45.0%
TTGTAAGATCAGGTGAGGCA+AGG + chr1_2:42789490-42789509 None:intergenic 45.0%
GCTTGACAGAATCAGGTTAC+AGG + chr1_2:42790290-42790309 None:intergenic 45.0%
GTATGAAATGGAGTTCCCTC+CGG + chr1_2:42790432-42790451 None:intergenic 45.0%
! TTAGTGGAAGGCTTTGTGGA+CGG - chr1_2:42790456-42790475 Msa0071250:intron 45.0%
GAGAGCTTACGGAAATAAGC+TGG - chr1_2:42791096-42791115 Msa0071250:CDS 45.0%
GTCGTCGTTGAAACCAGAAA+GGG + chr1_2:42791696-42791715 None:intergenic 45.0%
! GGATGTCGTGAGAGTTGATT+TGG - chr1_2:42791733-42791752 Msa0071250:intron 45.0%
!! TGTCGTGAGAGTTGATTTGG+TGG - chr1_2:42791736-42791755 Msa0071250:intron 45.0%
!! GTCGTGAGAGTTGATTTGGT+GGG - chr1_2:42791737-42791756 Msa0071250:intron 45.0%
TCAAATCATCTACCTCCCCA+AGG - chr1_2:42792276-42792295 Msa0071250:intron 45.0%
ATCTTAACCCTCCAGTTCCT+AGG - chr1_2:42792822-42792841 Msa0071250:intron 45.0%
TCTTAACCCTCCAGTTCCTA+GGG - chr1_2:42792823-42792842 Msa0071250:intron 45.0%
!! CTTGCCTTTAGGATGAACTC+CGG + chr1_2:42792868-42792887 None:intergenic 45.0%
!! CAGGGTTGGTTAATGTCGAA+AGG + chr1_2:42793470-42793489 None:intergenic 45.0%
AGAAGAATTCAGCAAGGCCT+TGG - chr1_2:42793531-42793550 Msa0071250:intron 45.0%
GAAGAATTCAGCAAGGCCTT+GGG - chr1_2:42793532-42793551 Msa0071250:intron 45.0%
AAGAATTCAGCAAGGCCTTG+GGG - chr1_2:42793533-42793552 Msa0071250:intron 45.0%
GCATCAGAGGTTGCAAATAG+CGG - chr1_2:42793607-42793626 Msa0071250:intron 45.0%
! GATGCATCTTTTTCTCCACC+TGG + chr1_2:42793688-42793707 None:intergenic 45.0%
AGGTGTAGTTACAGCTCAAG+TGG + chr1_2:42794257-42794276 None:intergenic 45.0%
TATGGCTCCTTCAGGTATTC+AGG - chr1_2:42794395-42794414 Msa0071250:intron 45.0%
GCTTGTTTCGGCATGTTGTT+TGG + chr1_2:42794550-42794569 None:intergenic 45.0%
CAGTGTTCGGTTGCTTGTTT+CGG + chr1_2:42794562-42794581 None:intergenic 45.0%
! CAAGCAACCGAACACTGATT+TGG - chr1_2:42794565-42794584 Msa0071250:intron 45.0%
ACTAACACCATTGTGACTCG+AGG - chr1_2:42794638-42794657 Msa0071250:intron 45.0%
AGACATACCTCGAGTCACAA+TGG + chr1_2:42794648-42794667 None:intergenic 45.0%
!! CCGGTTTTGACACACTATGT+CGG + chr1_2:42794916-42794935 None:intergenic 45.0%
CCGACATAGTGTGTCAAAAC+CGG - chr1_2:42794913-42794932 Msa0071250:intron 45.0%
TGCACAAGGATACCTTACTC+AGG - chr1_2:42795065-42795084 Msa0071250:intron 45.0%
CAAAAAGGAGAGCCTGAGTA+AGG + chr1_2:42795080-42795099 None:intergenic 45.0%
!! TTCATTAAAATAAATTAAAA+CGG + chr1_2:42793283-42793302 None:intergenic 5.0%
!!! AATTTTTTATTTTACTTTTA+TGG - chr1_2:42794377-42794396 Msa0071250:intron 5.0%
TATGTATCGTGAAGGACCGG+AGG - chr1_2:42790413-42790432 Msa0071250:intron 50.0%
ATGTATCGTGAAGGACCGGA+GGG - chr1_2:42790414-42790433 Msa0071250:intron 50.0%
CCATGATGCTCTTCGACTCA+GGG + chr1_2:42791670-42791689 None:intergenic 50.0%
!! CCTGAGTCGAAGAGCATCAT+GGG - chr1_2:42791668-42791687 Msa0071250:intron 50.0%
AGCATCATGGGAACCCTTTC+TGG - chr1_2:42791680-42791699 Msa0071250:intron 50.0%
CGTCGTCGTTGAAACCAGAA+AGG + chr1_2:42791697-42791716 None:intergenic 50.0%
CGACGCAATTCCTGAAGTGA+AGG - chr1_2:42791712-42791731 Msa0071250:intron 50.0%
CTCACGACATCCTTCACTTC+AGG + chr1_2:42791725-42791744 None:intergenic 50.0%
!! GTGAGAGTTGATTTGGTGGG+AGG - chr1_2:42791740-42791759 Msa0071250:intron 50.0%
TCAAGGCAGCTCATTGGCAA+TGG - chr1_2:42792079-42792098 Msa0071250:intron 50.0%
CTTAACCCTCCAGTTCCTAG+GGG - chr1_2:42792824-42792843 Msa0071250:intron 50.0%
! CTTTTCCCCTAGGAACTGGA+GGG + chr1_2:42792832-42792851 None:intergenic 50.0%
CTCCAGTTCCTAGGGGAAAA+GGG - chr1_2:42792831-42792850 Msa0071250:intron 50.0%
GAAAAGGGACCCAGGTAATC+CGG - chr1_2:42792846-42792865 Msa0071250:intron 50.0%
GGATGAACTCCGGATTACCT+GGG + chr1_2:42792858-42792877 None:intergenic 50.0%
AGGATGAACTCCGGATTACC+TGG + chr1_2:42792859-42792878 None:intergenic 50.0%
CAGATCGACAGCATCCGATT+TGG + chr1_2:42792925-42792944 None:intergenic 50.0%
TCAAGTAGTCAGGCTCGTGT+GGG + chr1_2:42792973-42792992 None:intergenic 50.0%
ATCAAGTAGTCAGGCTCGTG+TGG + chr1_2:42792974-42792993 None:intergenic 50.0%
AGAATTCAGCAAGGCCTTGG+GGG - chr1_2:42793534-42793553 Msa0071250:intron 50.0%
AGCATACAATGGATCCCCCA+AGG + chr1_2:42793551-42793570 None:intergenic 50.0%
CACGACTACTAGTGCATCAG+AGG - chr1_2:42793594-42793613 Msa0071250:intron 50.0%
ACGGTTGCATCCATTGTCAG+TGG + chr1_2:42793751-42793770 None:intergenic 50.0%
ATCTTTGGCAAAGCTGCTCG+AGG + chr1_2:42794010-42794029 None:intergenic 50.0%
TCGAGCAGCTTTGCCAAAGA+TGG - chr1_2:42794009-42794028 Msa0071250:intron 50.0%
CGAGCAGCTTTGCCAAAGAT+GGG - chr1_2:42794010-42794029 Msa0071250:intron 50.0%
AAAGATGGGTCCCCTTGCAT+GGG - chr1_2:42794024-42794043 Msa0071250:intron 50.0%
AGACTCCGCTCTGATAGAGT+TGG + chr1_2:42794464-42794483 None:intergenic 50.0%
TTTGGACAGTGGCGCGATTA+TGG - chr1_2:42794523-42794542 Msa0071250:intron 50.0%
AAGGGCGGAGACTTAATCTC+TGG + chr1_2:42795044-42795063 None:intergenic 50.0%
GGTATCCTTGTGCAAAAGGG+CGG + chr1_2:42795059-42795078 None:intergenic 50.0%
TTTCGTGGCCTCTGTCTTCG+AGG - chr1_2:42791476-42791495 Msa0071250:intron 55.0%
TTCGTGGCCTCTGTCTTCGA+GGG - chr1_2:42791477-42791496 Msa0071250:intron 55.0%
ACAGCTTCCCTCGAAGACAG+AGG + chr1_2:42791487-42791506 None:intergenic 55.0%
!! CCCTGAGTCGAAGAGCATCA+TGG - chr1_2:42791667-42791686 Msa0071250:intron 55.0%
CCCATGATGCTCTTCGACTC+AGG + chr1_2:42791671-42791690 None:intergenic 55.0%
GGGAGGCTTTGCTTTGCAGA+AGG - chr1_2:42791757-42791776 Msa0071250:intron 55.0%
! CCTTTTCCCCTAGGAACTGG+AGG + chr1_2:42792833-42792852 None:intergenic 55.0%
CCTCCAGTTCCTAGGGGAAA+AGG - chr1_2:42792830-42792849 Msa0071250:intron 55.0%
! GTCCCTTTTCCCCTAGGAAC+TGG + chr1_2:42792836-42792855 None:intergenic 55.0%
CATGCAAGGGGACCCATCTT+TGG + chr1_2:42794025-42794044 None:intergenic 55.0%
CAAAGATGGGTCCCCTTGCA+TGG - chr1_2:42794023-42794042 Msa0071250:intron 55.0%
GAAGCACGTTCGACACACTC+TGG - chr1_2:42794156-42794175 Msa0071250:intron 55.0%
CTATCAGAGCGGAGTCTTGC+CGG - chr1_2:42794467-42794486 Msa0071250:intron 55.0%
TGATCGGACTCCCGGCTAAA+TGG + chr1_2:42794959-42794978 None:intergenic 55.0%
ACACCAAGTGATCGGACTCC+CGG + chr1_2:42794967-42794986 None:intergenic 55.0%
GGCGGAGACTTAATCTCTGG+AGG + chr1_2:42795041-42795060 None:intergenic 55.0%
! AGTCTCCGCCCTTTTGCACA+AGG - chr1_2:42795051-42795070 Msa0071250:intron 55.0%
TCCTAGGGGAAAAGGGACCC+AGG - chr1_2:42792838-42792857 Msa0071250:intron 60.0%
! ACCTGGGTCCCTTTTCCCCT+AGG + chr1_2:42792842-42792861 None:intergenic 60.0%
GAGTCTTGCCGGACCTACTG+AGG - chr1_2:42794478-42794497 Msa0071250:intron 60.0%
! CTGGCTTGCCTCAGTAGGTC+CGG + chr1_2:42794489-42794508 None:intergenic 60.0%
! CCAACCTGGCTTGCCTCAGT+AGG + chr1_2:42794494-42794513 None:intergenic 60.0%
CCTACTGAGGCAAGCCAGGT+TGG - chr1_2:42794491-42794510 Msa0071250:intron 60.0%
TAGCCGGGAGTCCGATCACT+TGG - chr1_2:42794961-42794980 Msa0071250:intron 60.0%
CGGACCTACTGAGGCAAGCC+AGG - chr1_2:42794487-42794506 Msa0071250:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 42789437 42795270 42789437 ID=Msa0071250;Name=Msa0071250
chr1_2 mRNA 42789437 42795270 42789437 ID=Msa0071250-mRNA-1;Parent=Msa0071250;Name=Msa0071250-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.75|0.88|1|0.62|0.77|9|540|574
chr1_2 exon 42789437 42790298 42789437 ID=Msa0071250-mRNA-1:exon:13001;Parent=Msa0071250-mRNA-1
chr1_2 exon 42790514 42791205 42790514 ID=Msa0071250-mRNA-1:exon:13000;Parent=Msa0071250-mRNA-1
chr1_2 exon 42792587 42792689 42792587 ID=Msa0071250-mRNA-1:exon:12999;Parent=Msa0071250-mRNA-1
chr1_2 exon 42792903 42793042 42792903 ID=Msa0071250-mRNA-1:exon:12998;Parent=Msa0071250-mRNA-1
chr1_2 exon 42793140 42793239 42793140 ID=Msa0071250-mRNA-1:exon:12997;Parent=Msa0071250-mRNA-1
chr1_2 exon 42794060 42794099 42794060 ID=Msa0071250-mRNA-1:exon:12996;Parent=Msa0071250-mRNA-1
chr1_2 exon 42794215 42794323 42794215 ID=Msa0071250-mRNA-1:exon:12995;Parent=Msa0071250-mRNA-1
chr1_2 exon 42794661 42794776 42794661 ID=Msa0071250-mRNA-1:exon:12994;Parent=Msa0071250-mRNA-1
chr1_2 exon 42795168 42795270 42795168 ID=Msa0071250-mRNA-1:exon:12993;Parent=Msa0071250-mRNA-1
chr1_2 CDS 42795168 42795270 42795168 ID=Msa0071250-mRNA-1:cds;Parent=Msa0071250-mRNA-1
chr1_2 CDS 42794661 42794776 42794661 ID=Msa0071250-mRNA-1:cds;Parent=Msa0071250-mRNA-1
chr1_2 CDS 42794215 42794323 42794215 ID=Msa0071250-mRNA-1:cds;Parent=Msa0071250-mRNA-1
chr1_2 CDS 42794060 42794099 42794060 ID=Msa0071250-mRNA-1:cds;Parent=Msa0071250-mRNA-1
chr1_2 CDS 42793140 42793239 42793140 ID=Msa0071250-mRNA-1:cds;Parent=Msa0071250-mRNA-1
chr1_2 CDS 42792903 42793042 42792903 ID=Msa0071250-mRNA-1:cds;Parent=Msa0071250-mRNA-1
chr1_2 CDS 42792587 42792689 42792587 ID=Msa0071250-mRNA-1:cds;Parent=Msa0071250-mRNA-1
chr1_2 CDS 42790514 42791205 42790514 ID=Msa0071250-mRNA-1:cds;Parent=Msa0071250-mRNA-1
chr1_2 CDS 42789977 42790298 42789977 ID=Msa0071250-mRNA-1:cds;Parent=Msa0071250-mRNA-1
chr1_2 three_prime_UTR 42789437 42789976 42789437 ID=Msa0071250-mRNA-1:three_prime_utr;Parent=Msa0071250-mRNA-1
Gene Sequence

>Msa0071250

ATGGAGAAGAAACGAAAGATTGTGCAGTATAGGGAGAGGCTAGATAAGACCCTTGCCTCACCTGATCTTACAAATGTTGAGATACTCAAAAAGCTTGTCAAAAAATATAAGGAGAAATTCGTAGAACATAAAACTGCAGAAATATCTAACTTTCTAGATATGTTAAGGAGTACTTCAGATGATCATGGAAGGTCTAATACATCACAAAATGATTGGAAGTTAAAACAGGATGGCGAAGAGTTTCGTGTTATGTATCGTGAAGGACCGGAGGGAACTCCATTTCATACAATGTTAGTGGAAGGCTTTGTGGACGGACCTGTTGATGTTTGTTTATGTATCTCATGGCAGACTTCTCTTTACAAAAAATGGATGAAGGTTTCGTGGCCTCTGTCTTCGAGGGAAGCTGTAGTGCACTATTATCTGTTTGAGTACTTTCAAGATGACTTAATTGTTGTTCTTACGAATTCGGTCCCTGAGTCGAAGAGCATCATGGGAACCCTTTCTGGTTTCAACGACGACGCAATTCCTGAAGTGAAGGATGTCGTGAGAGTTGATTTGGTGGGAGGCTTTGCTTTGCAGAAGGTGACATCAGAAAGAAGTTACTTTCGGACAATAGCGAATATGGATATAAAGGTGGATTTTGTTCCTCCATCCTTGATAAACTTTATTTCAAGGCAGCTCATTGGCAATGGTTTCAGACTTTATCAGAAGGTTGTGGCTTCTGTGATGAGCAGTGATAAAGAAGAATTCAGCAAGGCCTTGGGGGATCCATTGTATGCTAGAATTCGCAAGGCTCTATATAGCACGACTACTAGTGCATCAGAGGTTGCAAATAGCGGAGAGCTTCAACAAGTTGCAAAAATTCACCCTGCTGAATACCTTGTTGAAAGTAAACCAGGTGGAGAAAAAGATGCATCTGAAGAGGATAAAATAAGTCAATGTTCAAATAATGTCATGCCACTGACAATGGATGCAACCGTACGAGAAAATAGCAAAGCATTGAGTGAGATTGTAGAATTAGGTGAGGAAGAGATTATACAAAGTGTGGAGGATGATGAGAAAGTAAATGGCATTCCAATTCGAAATGAGAAAGTTGGTGCAATTGTACAAAAAGGATCGAGGAGTGTATCTATCAGCTCAGATGTCAAACAGGCTATAGAAACATTAGACAAGGCCATTTCAATGATTAGAGAATATCGATTACATTCTGATATGGCCTCGAGCAGCTTTGCCAAAGATGGGTCCCCTTGCATGGGAAAAATAGATAGAGTTGATTCATATTCGACAAGTATTGTTAAACCTTGTGATAAAAATGAGGTTAGAGTTGAGGTACCAAATAAAGATATATTGGAGGGAACTTCACAAGAAGCACGTTCGACACACTCTGGCATCCAAAACTTAAGGTATTCAGGAATAGATCCAAACTTAAAGGAAATAAATCCCAACAAAGTGATTCCAACTCTATCAGAGCGGAGTCTTGCCGGACCTACTGAGGCAAGCCAGGTTGGTTCATATTCTTTGGACAGTGGCGCGATTATGGACCAAACAACATGCCGAAACAAGCAACCGAACACTGATTTGGTCCAAGACATGTCTTCAGATGACAAAGTCAAGTCAAGAAGGCAGAAAAAAACTAACACCATTGTGACTCGAGGTATGTCTTCAAATGTACCAAAGAAGTTGAGTGGTTATAAAAAATATATGTGCTTTGGTTTTCTGCATTAA

Protein sequence

>Msa0071250

MEKKRKIVQYRERLDKTLASPDLTNVEILKKLVKKYKEKFVEHKTAEISNFLDMLRSTSDDHGRSNTSQNDWKLKQDGEEFRVMYREGPEGTPFHTMLVEGFVDGPVDVCLCISWQTSLYKKWMKVSWPLSSREAVVHYYLFEYFQDDLIVVLTNSVPESKSIMGTLSGFNDDAIPEVKDVVRVDLVGGFALQKVTSERSYFRTIANMDIKVDFVPPSLINFISRQLIGNGFRLYQKVVASVMSSDKEEFSKALGDPLYARIRKALYSTTTSASEVANSGELQQVAKIHPAEYLVESKPGGEKDASEEDKISQCSNNVMPLTMDATVRENSKALSEIVELGEEEIIQSVEDDEKVNGIPIRNEKVGAIVQKGSRSVSISSDVKQAIETLDKAISMIREYRLHSDMASSSFAKDGSPCMGKIDRVDSYSTSIVKPCDKNEVRVEVPNKDILEGTSQEARSTHSGIQNLRYSGIDPNLKEINPNKVIPTLSERSLAGPTEASQVGSYSLDSGAIMDQTTCRNKQPNTDLVQDMSSDDKVKSRRQKKTNTIVTRGMSSNVPKKLSGYKKYMCFGFLH*