AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0021490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0021490 MtrunA17_Chr1g0186331 96.117 103 4 0 1 103 1 103 2.80e-69 202
Msa0021490 MtrunA17_Chr1g0168521 49.038 104 45 3 4 103 2 101 1.37e-20 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0021490 AT2G33390.1 42.308 104 52 4 2 103 1 98 1.60e-14 63.9
Msa0021490 AT2G33390.2 38.710 93 51 3 2 94 1 87 1.45e-11 56.2

Find 66 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTGTGGATGTGGCTTCTT+TGG 0.209800 1_1:+38377962 Msa0021490:CDS
TAAGTAACTAAGAAATTTAA+AGG 0.231394 1_1:-38380532 None:intergenic
TTTATATTTACTTCAAATTA+GGG 0.275746 1_1:-38380255 None:intergenic
ATGAATCGAAGGAACATTAT+TGG 0.284730 1_1:+38380222 Msa0021490:three_prime_UTR
GGCTTCTTTGGATTGTAAAA+AGG 0.314586 1_1:+38377974 Msa0021490:CDS
TGAATCGAAGGAACATTATT+GGG 0.325430 1_1:+38380223 Msa0021490:three_prime_UTR
CACAACCCAGTTCTTGAATT+CGG 0.335734 1_1:-38377786 None:intergenic
AAGGATCTAGTTCATCTAAC+CGG 0.368893 1_1:+38380300 Msa0021490:three_prime_UTR
AAAGTTTGAGACAGGTTATC+AGG 0.371142 1_1:-38380192 None:intergenic
TTGTTACTTGTTGTTGATGA+TGG 0.374801 1_1:+38377893 Msa0021490:exon
CAGTTTGTGCTCCTGGTCCC+TGG 0.385510 1_1:+38380627 Msa0021490:three_prime_UTR
TTGATTCCGAATTCAAGAAC+TGG 0.391734 1_1:+38377780 Msa0021490:five_prime_UTR
GATGAACTAGATCCTTATCT+TGG 0.397484 1_1:-38380293 None:intergenic
ACTGTCCAAATCAAAATTGA+TGG 0.415555 1_1:-38380389 None:intergenic
AATTCAAAACAGAGGAATAC+AGG 0.415570 1_1:-38377746 None:intergenic
GTTATGTCAGTTTGTGCTCC+TGG 0.421767 1_1:+38380620 Msa0021490:three_prime_UTR
TTGAATTCGGAATCAAAAGA+TGG 0.422947 1_1:-38377773 None:intergenic
ATATTATACATTCAATTGCT+TGG 0.424329 1_1:+38380467 Msa0021490:three_prime_UTR
GGGTAGTGAGAGAATTTGTA+TGG 0.425137 1_1:-38377685 None:intergenic
GAGTGTCGTCAACAAAGAAT+TGG 0.429184 1_1:-38378039 None:intergenic
GGATGATACTGTGACCAAAA+AGG 0.437333 1_1:+38377914 Msa0021490:CDS
ATCAATTCAGATTCTTGTTG+TGG 0.454464 1_1:+38377637 Msa0021490:five_prime_UTR
TACTTCAAATTAGGGATCTA+CGG 0.455125 1_1:-38380247 None:intergenic
AGGAGGAATGGCTCAAAAGT+TGG 0.455498 1_1:+38378070 Msa0021490:CDS
TTCAGTAGAAAGTTTGAGAC+AGG 0.456310 1_1:-38380200 None:intergenic
TGTGAATAAGCCTGTGGATG+TGG 0.459711 1_1:+38377953 Msa0021490:CDS
TAGATCCTTATCTTGGCTGT+TGG 0.472547 1_1:-38380286 None:intergenic
TGTTGCAGCTATGCAATTTG+AGG 0.478704 1_1:-38380767 None:intergenic
GAAGATCATGGTCATGTCAA+TGG 0.485595 1_1:+38377999 Msa0021490:CDS
GTTCATGTTGTAAATGAAAG+AGG 0.488811 1_1:+38380489 Msa0021490:three_prime_UTR
TACAATTGTATACAAACTCC+AGG 0.490301 1_1:-38380645 None:intergenic
CAAGAATCTGAATTGATTCA+CGG 0.491740 1_1:-38377631 None:intergenic
AAACAAGCTTGTTGAGGTGT+TGG 0.509553 1_1:+38378133 Msa0021490:CDS
AAGACGAAGCAGATGATGAA+AGG 0.514189 1_1:-38377706 None:intergenic
CCCAATAAATTGTCAAAACC+CGG 0.520926 1_1:-38380319 None:intergenic
TGAATTCGGAATCAAAAGAT+GGG 0.525631 1_1:-38377772 None:intergenic
ATTCTTAAATTTAGATCCTG+TGG 0.525744 1_1:+38377519 Msa0021490:five_prime_UTR
TCCAAAGAAGCCACATCCAC+AGG 0.532777 1_1:-38377963 None:intergenic
TTGACGACACTCCCTAAAAG+AGG 0.533850 1_1:+38378050 Msa0021490:CDS
ACTCTCCAACAGCCAAGATA+AGG 0.539774 1_1:+38380281 Msa0021490:three_prime_UTR
CTCAACAAGCTTGTTTCCAA+TGG 0.552684 1_1:-38378126 None:intergenic
CTTTCTACTGAATGAATCGA+AGG 0.558989 1_1:+38380211 Msa0021490:three_prime_UTR
ATTCAAAACAGAGGAATACA+GGG 0.559020 1_1:-38377745 None:intergenic
TGATTCCGAATTCAAGAACT+GGG 0.561843 1_1:+38377781 Msa0021490:five_prime_UTR
AGGATCTAGTTCATCTAACC+GGG 0.568450 1_1:+38380301 Msa0021490:three_prime_UTR
AGACGAAGCAGATGATGAAA+GGG 0.570239 1_1:-38377705 None:intergenic
AAAAGTTGGATAAGACATGT+AGG 0.571842 1_1:+38378084 Msa0021490:CDS
GTATACAAACTCCAGGGACC+AGG 0.579980 1_1:-38380638 None:intergenic
ACTCCCTAAAAGAGGAGGAA+TGG 0.586268 1_1:+38378058 Msa0021490:CDS
GTGCAGTGGACTGATACCAT+TGG 0.587155 1_1:+38378110 Msa0021490:CDS
GGACAGTGCTGATTTGAGCA+CGG 0.596400 1_1:+38380405 Msa0021490:three_prime_UTR
TCTCAAATCTTATGCTCACA+AGG 0.600946 1_1:-38380741 None:intergenic
GTAGACAATCTAAGCAACAT+AGG 0.603646 1_1:-38380686 None:intergenic
CATTGGAAACAAGCTTGTTG+AGG 0.604618 1_1:+38378127 Msa0021490:CDS
AAGAGTATCGTATCACACAC+AGG 0.610948 1_1:-38377608 None:intergenic
ATGGGTTAAATTCAAAACAG+AGG 0.640462 1_1:-38377754 None:intergenic
GAATCGAAGGAACATTATTG+GGG 0.645264 1_1:+38380224 Msa0021490:three_prime_UTR
TTGAGACAGAACAGAACACA+AGG 0.656006 1_1:-38377577 None:intergenic
TGTTAGTGACTCAGATGATG+AGG 0.670468 1_1:+38380136 Msa0021490:CDS
ACAATTGTATACAAACTCCA+GGG 0.678972 1_1:-38380644 None:intergenic
ACGACACTCCCTAAAAGAGG+AGG 0.681962 1_1:+38378053 Msa0021490:CDS
TGGCTCTGTGAATAAGCCTG+TGG 0.694866 1_1:+38377947 Msa0021490:CDS
AGGTGTTGGAATATGAACCA+AGG 0.696830 1_1:+38378147 Msa0021490:CDS
AGAGTATCGTATCACACACA+GGG 0.710881 1_1:-38377607 None:intergenic
TTCAAAACAGAGGAATACAG+GGG 0.716140 1_1:-38377744 None:intergenic
AGACATGTAGGAGAGTGCAG+TGG 0.721899 1_1:+38378096 Msa0021490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATTTACTTCAAATTA+GGG - chr1_1:38380258-38380277 None:intergenic 10.0%
!!! TTTTATATTTACTTCAAATT+AGG - chr1_1:38380259-38380278 None:intergenic 10.0%
!!! TGTTATTTTAATGTTACATA+TGG + chr1_1:38378467-38378486 Msa0021490:intron 15.0%
!! ATAATACTAGTTAAATTGAA+GGG + chr1_1:38379311-38379330 Msa0021490:intron 15.0%
!! TAAGTAACTAAGAAATTTAA+AGG - chr1_1:38380535-38380554 None:intergenic 15.0%
!! AGGTTATGAAATAAAAAGAA+GGG - chr1_1:38377560-38377579 None:intergenic 20.0%
!! AAGGTTATGAAATAAAAAGA+AGG - chr1_1:38377561-38377580 None:intergenic 20.0%
!! CAAAAAATTCAGAAAAATCA+AGG - chr1_1:38377842-38377861 None:intergenic 20.0%
!! TAACTGATAAAAATTTACCT+TGG - chr1_1:38378167-38378186 None:intergenic 20.0%
!!! TGGTATTTTGGTTAAATTTA+TGG + chr1_1:38378418-38378437 Msa0021490:intron 20.0%
!!! TTTTAATGTTACATATGGAA+TGG + chr1_1:38378472-38378491 Msa0021490:intron 20.0%
!!! TTTTTCAAAAACACTAGATT+TGG - chr1_1:38378814-38378833 None:intergenic 20.0%
!!! TTAAACAGTTCAGATTTTAA+TGG - chr1_1:38379098-38379117 None:intergenic 20.0%
!! TTGCAAATGTTAAATATTAC+TGG + chr1_1:38379210-38379229 Msa0021490:intron 20.0%
!! GATAATACTAGTTAAATTGA+AGG + chr1_1:38379310-38379329 Msa0021490:intron 20.0%
!!! TCACAAGTTTATAGTTTTAA+TGG - chr1_1:38379481-38379500 None:intergenic 20.0%
!!! TTTTAATTGTTCATCGTTTA+TGG + chr1_1:38379561-38379580 Msa0021490:intron 20.0%
!! AATAACTGAATTGTAGTAAA+GGG - chr1_1:38379655-38379674 None:intergenic 20.0%
!! AAATAACTGAATTGTAGTAA+AGG - chr1_1:38379656-38379675 None:intergenic 20.0%
!!! TTCAGTTTTTAAAACATTGA+TGG + chr1_1:38379756-38379775 Msa0021490:intron 20.0%
!!! TCAGTTTTTAAAACATTGAT+GGG + chr1_1:38379757-38379776 Msa0021490:intron 20.0%
!! ATATTATACATTCAATTGCT+TGG + chr1_1:38380467-38380486 Msa0021490:three_prime_UTR 20.0%
! ATTCTTAAATTTAGATCCTG+TGG + chr1_1:38377519-38377538 Msa0021490:five_prime_UTR 25.0%
! GAAAAAAAAAAATTCACCAC+AGG - chr1_1:38377538-38377557 None:intergenic 25.0%
! TTCACTATTTGTACAAAACA+AGG - chr1_1:38378390-38378409 None:intergenic 25.0%
! ACAAATAGTGAAATTTGAGA+TGG + chr1_1:38378398-38378417 Msa0021490:intron 25.0%
!!! TGAAATTTGAGATGGTATTT+TGG + chr1_1:38378406-38378425 Msa0021490:intron 25.0%
! AGAATATGAAAATGAGTTTG+TGG + chr1_1:38378622-38378641 Msa0021490:intron 25.0%
! GAATATGAAAATGAGTTTGT+GGG + chr1_1:38378623-38378642 Msa0021490:intron 25.0%
! GGTTAAGATTAAAAACCTTT+GGG + chr1_1:38378738-38378757 Msa0021490:intron 25.0%
! TCTAAGTTAGACATATTTAG+AGG + chr1_1:38378958-38378977 Msa0021490:intron 25.0%
! TGAAATACCATCTTAAAATC+TGG - chr1_1:38379055-38379074 None:intergenic 25.0%
! ATATTACTGGAATACATCTT+TGG + chr1_1:38379223-38379242 Msa0021490:intron 25.0%
! TAAATTGAAGGGAGATTTAT+TGG + chr1_1:38379322-38379341 Msa0021490:intron 25.0%
! ATGTCATAAAGATAAGTGTT+TGG + chr1_1:38379370-38379389 Msa0021490:intron 25.0%
! TTCAGTTATTACATAGAAAC+TGG + chr1_1:38379404-38379423 Msa0021490:intron 25.0%
! CTACAATTCAGTTATTTAGA+CGG + chr1_1:38379659-38379678 Msa0021490:intron 25.0%
! TAACTAGATGTATAATGCAA+AGG + chr1_1:38379861-38379880 Msa0021490:intron 25.0%
!!! ACACTTTTTGACATATCATA+AGG - chr1_1:38380040-38380059 None:intergenic 25.0%
! ATCCATTATTATCTGACATT+TGG + chr1_1:38380090-38380109 Msa0021490:intron 25.0%
! TTTAAAGGAAAAAAAGACTG+AGG - chr1_1:38380520-38380539 None:intergenic 25.0%
! CAAGAATCTGAATTGATTCA+CGG - chr1_1:38377634-38377653 None:intergenic 30.0%
ATCAATTCAGATTCTTGTTG+TGG + chr1_1:38377637-38377656 Msa0021490:five_prime_UTR 30.0%
ATTCAAAACAGAGGAATACA+GGG - chr1_1:38377748-38377767 None:intergenic 30.0%
AATTCAAAACAGAGGAATAC+AGG - chr1_1:38377749-38377768 None:intergenic 30.0%
! ATGGGTTAAATTCAAAACAG+AGG - chr1_1:38377757-38377776 None:intergenic 30.0%
TGAATTCGGAATCAAAAGAT+GGG - chr1_1:38377775-38377794 None:intergenic 30.0%
TTGAATTCGGAATCAAAAGA+TGG - chr1_1:38377776-38377795 None:intergenic 30.0%
! GTTGTGATTTTCTGTCAAAT+GGG + chr1_1:38377803-38377822 Msa0021490:five_prime_UTR 30.0%
!! TGAACTTGTCTTTTTCATCT+TGG + chr1_1:38377863-38377882 Msa0021490:five_prime_UTR 30.0%
!! TTGTTACTTGTTGTTGATGA+TGG + chr1_1:38377893-38377912 Msa0021490:exon 30.0%
TGTAAAAAGGTTGAAGATCA+TGG + chr1_1:38377987-38378006 Msa0021490:CDS 30.0%
AAAAGTTGGATAAGACATGT+AGG + chr1_1:38378084-38378103 Msa0021490:CDS 30.0%
! ACTATGGTTCAAATGAGTTT+TGG - chr1_1:38378320-38378339 None:intergenic 30.0%
TGTGTGTATACTAGGAAAAA+AGG + chr1_1:38378339-38378358 Msa0021490:intron 30.0%
AGGAAAAAAGGAGTTGAAAT+TGG + chr1_1:38378351-38378370 Msa0021490:intron 30.0%
TACATATGGAATGGAATCTT+TGG + chr1_1:38378481-38378500 Msa0021490:intron 30.0%
GAATGGAATCTTTGGTAAAT+AGG + chr1_1:38378489-38378508 Msa0021490:intron 30.0%
ATTTCAGAGATAACGAATTC+GGG - chr1_1:38378568-38378587 None:intergenic 30.0%
GATTTCAGAGATAACGAATT+CGG - chr1_1:38378569-38378588 None:intergenic 30.0%
!! AATTCGTTATCTCTGAAATC+CGG + chr1_1:38378569-38378588 Msa0021490:intron 30.0%
! ATAGGATTTTGCCTAAATGT+AGG - chr1_1:38378684-38378703 None:intergenic 30.0%
CATTTAGGCAAAATCCTATT+AGG + chr1_1:38378685-38378704 Msa0021490:intron 30.0%
AATCCTATTAGGAGATGATT+TGG + chr1_1:38378696-38378715 Msa0021490:intron 30.0%
! TGATTTGGAGTCAAATTTGT+AGG + chr1_1:38378711-38378730 Msa0021490:intron 30.0%
! GATTTGGAGTCAAATTTGTA+GGG + chr1_1:38378712-38378731 Msa0021490:intron 30.0%
CGGTTAAGATTAAAAACCTT+TGG + chr1_1:38378737-38378756 Msa0021490:intron 30.0%
! TACTGGAACTTCATTCATTT+TGG + chr1_1:38378776-38378795 Msa0021490:intron 30.0%
TATGTCTAACTTAGACGAAT+GGG - chr1_1:38378953-38378972 None:intergenic 30.0%
ATATGTCTAACTTAGACGAA+TGG - chr1_1:38378954-38378973 None:intergenic 30.0%
ATTTGCAAATGTTAATCCTC+AGG - chr1_1:38379198-38379217 None:intergenic 30.0%
TAATACAGATAAGCTCTTAG+TGG + chr1_1:38379273-38379292 Msa0021490:intron 30.0%
!!! TATAGTTTTAATGGAGCTAC+AGG - chr1_1:38379472-38379491 None:intergenic 30.0%
TGTGATATGATAGAAACTGT+TGG + chr1_1:38379496-38379515 Msa0021490:intron 30.0%
GTGATATGATAGAAACTGTT+GGG + chr1_1:38379497-38379516 Msa0021490:intron 30.0%
TGATATGATAGAAACTGTTG+GGG + chr1_1:38379498-38379517 Msa0021490:intron 30.0%
!!! CACTGTTTTAAAAACCAAAC+TGG + chr1_1:38379593-38379612 Msa0021490:intron 30.0%
!!! GTTTTAAAAACCAAACTGGA+TGG + chr1_1:38379597-38379616 Msa0021490:intron 30.0%
TTATTTAGACGGTTCAATTG+TGG + chr1_1:38379670-38379689 Msa0021490:intron 30.0%
! CTCAATTCAAGTAGTTGATA+TGG + chr1_1:38379699-38379718 Msa0021490:intron 30.0%
AGAACCAAAAAGTTATGAAC+TGG - chr1_1:38379818-38379837 None:intergenic 30.0%
ATGCAAAGGTGAAAATTGAT+AGG + chr1_1:38379875-38379894 Msa0021490:intron 30.0%
GACCAAATGTCAGATAATAA+TGG - chr1_1:38380095-38380114 None:intergenic 30.0%
ATGAATCGAAGGAACATTAT+TGG + chr1_1:38380222-38380241 Msa0021490:three_prime_UTR 30.0%
TGAATCGAAGGAACATTATT+GGG + chr1_1:38380223-38380242 Msa0021490:three_prime_UTR 30.0%
TACTTCAAATTAGGGATCTA+CGG - chr1_1:38380250-38380269 None:intergenic 30.0%
!!! GACATCCATCAATTTTGATT+TGG + chr1_1:38380384-38380403 Msa0021490:three_prime_UTR 30.0%
ACTGTCCAAATCAAAATTGA+TGG - chr1_1:38380392-38380411 None:intergenic 30.0%
GTTCATGTTGTAAATGAAAG+AGG + chr1_1:38380489-38380508 Msa0021490:three_prime_UTR 30.0%
ACAATTGTATACAAACTCCA+GGG - chr1_1:38380647-38380666 None:intergenic 30.0%
TACAATTGTATACAAACTCC+AGG - chr1_1:38380648-38380667 None:intergenic 30.0%
TTCAAAACAGAGGAATACAG+GGG - chr1_1:38377747-38377766 None:intergenic 35.0%
TTGATTCCGAATTCAAGAAC+TGG + chr1_1:38377780-38377799 Msa0021490:five_prime_UTR 35.0%
TGATTCCGAATTCAAGAACT+GGG + chr1_1:38377781-38377800 Msa0021490:five_prime_UTR 35.0%
! GGTTGTGATTTTCTGTCAAA+TGG + chr1_1:38377802-38377821 Msa0021490:five_prime_UTR 35.0%
ACCAAAAAGGATACTGCTAA+TGG + chr1_1:38377927-38377946 Msa0021490:CDS 35.0%
GGCTTCTTTGGATTGTAAAA+AGG + chr1_1:38377974-38377993 Msa0021490:CDS 35.0%
AACCATAGTGTGTGTATACT+AGG + chr1_1:38378331-38378350 Msa0021490:intron 35.0%
TTCCTAGTATACACACACTA+TGG - chr1_1:38378336-38378355 None:intergenic 35.0%
GAAAATGAGTTTGTGGGATT+TGG + chr1_1:38378629-38378648 Msa0021490:intron 35.0%
! TGTAGGAACTTCAAGGATTT+TGG - chr1_1:38378667-38378686 None:intergenic 35.0%
TCCTTGAAGTTCCTACATTT+AGG + chr1_1:38378670-38378689 Msa0021490:intron 35.0%
ACTCCAAATCATCTCCTAAT+AGG - chr1_1:38378702-38378721 None:intergenic 35.0%
ACAACATAAGTCTGTCTGAA+TGG + chr1_1:38378833-38378852 Msa0021490:intron 35.0%
!! GAGGAATTTGTATTTGCTGT+AGG + chr1_1:38378977-38378996 Msa0021490:intron 35.0%
!! TGTCTGTCCAGATTTTAAGA+TGG + chr1_1:38379045-38379064 Msa0021490:intron 35.0%
!! AATCCAAATTTTAGCACCTG+AGG + chr1_1:38379179-38379198 Msa0021490:intron 35.0%
AATCCTCAGGTGCTAAAATT+TGG - chr1_1:38379185-38379204 None:intergenic 35.0%
ATTGTTCATCGTTTATGGCA+TGG + chr1_1:38379566-38379585 Msa0021490:intron 35.0%
GAATTGTAGTAAAGGGCTAA+AGG - chr1_1:38379648-38379667 None:intergenic 35.0%
GATCTCACAAGTTTGATGTT+AGG + chr1_1:38379733-38379752 Msa0021490:intron 35.0%
! GTGACCAGTTCATAACTTTT+TGG + chr1_1:38379811-38379830 Msa0021490:intron 35.0%
ATGTATAATGCTGGAAGAGA+AGG + chr1_1:38379908-38379927 Msa0021490:intron 35.0%
! AAAGTTTGAGACAGGTTATC+AGG - chr1_1:38380195-38380214 None:intergenic 35.0%
! TTCAGTAGAAAGTTTGAGAC+AGG - chr1_1:38380203-38380222 None:intergenic 35.0%
CTTTCTACTGAATGAATCGA+AGG + chr1_1:38380211-38380230 Msa0021490:three_prime_UTR 35.0%
GAATCGAAGGAACATTATTG+GGG + chr1_1:38380224-38380243 Msa0021490:three_prime_UTR 35.0%
GATGAACTAGATCCTTATCT+TGG - chr1_1:38380296-38380315 None:intergenic 35.0%
! AAGGATCTAGTTCATCTAAC+CGG + chr1_1:38380300-38380319 Msa0021490:three_prime_UTR 35.0%
!! ACCGGGTTTTGACAATTTAT+TGG + chr1_1:38380318-38380337 Msa0021490:three_prime_UTR 35.0%
CCCAATAAATTGTCAAAACC+CGG - chr1_1:38380322-38380341 None:intergenic 35.0%
!! CCGGGTTTTGACAATTTATT+GGG + chr1_1:38380319-38380338 Msa0021490:three_prime_UTR 35.0%
!! GGTTTTGACAATTTATTGGG+TGG + chr1_1:38380322-38380341 Msa0021490:three_prime_UTR 35.0%
! ATTTTGCTACAAGGGTTCTT+TGG + chr1_1:38380598-38380617 Msa0021490:three_prime_UTR 35.0%
GTAGACAATCTAAGCAACAT+AGG - chr1_1:38380689-38380708 None:intergenic 35.0%
TCTCAAATCTTATGCTCACA+AGG - chr1_1:38380744-38380763 None:intergenic 35.0%
TTGAGACAGAACAGAACACA+AGG - chr1_1:38377580-38377599 None:intergenic 40.0%
!! AGAGTATCGTATCACACACA+GGG - chr1_1:38377610-38377629 None:intergenic 40.0%
!! AAGAGTATCGTATCACACAC+AGG - chr1_1:38377611-38377630 None:intergenic 40.0%
GGGTAGTGAGAGAATTTGTA+TGG - chr1_1:38377688-38377707 None:intergenic 40.0%
AGACGAAGCAGATGATGAAA+GGG - chr1_1:38377708-38377727 None:intergenic 40.0%
AAGACGAAGCAGATGATGAA+AGG - chr1_1:38377709-38377728 None:intergenic 40.0%
CACAACCCAGTTCTTGAATT+CGG - chr1_1:38377789-38377808 None:intergenic 40.0%
GGATGATACTGTGACCAAAA+AGG + chr1_1:38377914-38377933 Msa0021490:CDS 40.0%
! GCCATTAGCAGTATCCTTTT+TGG - chr1_1:38377931-38377950 None:intergenic 40.0%
GAAGATCATGGTCATGTCAA+TGG + chr1_1:38377999-38378018 Msa0021490:CDS 40.0%
! GAGTGTCGTCAACAAAGAAT+TGG - chr1_1:38378042-38378061 None:intergenic 40.0%
! CTCAACAAGCTTGTTTCCAA+TGG - chr1_1:38378129-38378148 None:intergenic 40.0%
!! CATTGGAAACAAGCTTGTTG+AGG + chr1_1:38378127-38378146 Msa0021490:CDS 40.0%
!! AAACAAGCTTGTTGAGGTGT+TGG + chr1_1:38378133-38378152 Msa0021490:CDS 40.0%
!! AGGTGTTGGAATATGAACCA+AGG + chr1_1:38378147-38378166 Msa0021490:CDS 40.0%
GCCTAAATGTAGGAACTTCA+AGG - chr1_1:38378674-38378693 None:intergenic 40.0%
!! ACCTTTGGGATCTGTCTAAA+TGG + chr1_1:38378752-38378771 Msa0021490:intron 40.0%
TTGCGTATCCAGTAGTTCTT+TGG + chr1_1:38378922-38378941 Msa0021490:intron 40.0%
TTTGGCCGATAATACAGAGA+TGG + chr1_1:38379241-38379260 Msa0021490:intron 40.0%
TTGGCCGATAATACAGAGAT+GGG + chr1_1:38379242-38379261 Msa0021490:intron 40.0%
!! AAGCTCTTAGTGGATTCTGA+AGG + chr1_1:38379283-38379302 Msa0021490:intron 40.0%
TGATAGAAACTGTTGGGGAA+AGG + chr1_1:38379503-38379522 Msa0021490:intron 40.0%
GATAGAAACTGTTGGGGAAA+GGG + chr1_1:38379504-38379523 Msa0021490:intron 40.0%
AGAGCAGAAACTAGCACAAT+AGG + chr1_1:38379527-38379546 Msa0021490:intron 40.0%
GCTGCTTCTATGTATAATGC+TGG + chr1_1:38379899-38379918 Msa0021490:intron 40.0%
CAATGCTTTCTTGCCTACTT+GGG + chr1_1:38379951-38379970 Msa0021490:intron 40.0%
AATGCTTTCTTGCCTACTTG+GGG + chr1_1:38379952-38379971 Msa0021490:intron 40.0%
ACATCACTGCACACACAATT+TGG - chr1_1:38380119-38380138 None:intergenic 40.0%
TGTTAGTGACTCAGATGATG+AGG + chr1_1:38380136-38380155 Msa0021490:CDS 40.0%
TAGATCCTTATCTTGGCTGT+TGG - chr1_1:38380289-38380308 None:intergenic 40.0%
! AGGATCTAGTTCATCTAACC+GGG + chr1_1:38380301-38380320 Msa0021490:three_prime_UTR 40.0%
! ACTCGTGCAATTTTGCTACA+AGG + chr1_1:38380589-38380608 Msa0021490:three_prime_UTR 40.0%
! CTCGTGCAATTTTGCTACAA+GGG + chr1_1:38380590-38380609 Msa0021490:three_prime_UTR 40.0%
TGTTGCAGCTATGCAATTTG+AGG - chr1_1:38380770-38380789 Msa0021500:three_prime_UTR 40.0%
TGTGAATAAGCCTGTGGATG+TGG + chr1_1:38377953-38377972 Msa0021490:CDS 45.0%
TTGACGACACTCCCTAAAAG+AGG + chr1_1:38378050-38378069 Msa0021490:CDS 45.0%
ACTCCCTAAAAGAGGAGGAA+TGG + chr1_1:38378058-38378077 Msa0021490:CDS 45.0%
! GAGCCATTCCTCCTCTTTTA+GGG - chr1_1:38378064-38378083 None:intergenic 45.0%
! TGAGCCATTCCTCCTCTTTT+AGG - chr1_1:38378065-38378084 None:intergenic 45.0%
AGGAGGAATGGCTCAAAAGT+TGG + chr1_1:38378070-38378089 Msa0021490:CDS 45.0%
CTGAAATCCGGAGTGATTCT+TGG + chr1_1:38378581-38378600 Msa0021490:intron 45.0%
ATTCTAACCAGAGCTTCCCT+CGG - chr1_1:38378607-38378626 None:intergenic 45.0%
GGAGTCAAATTTGTAGGGTG+CGG + chr1_1:38378717-38378736 Msa0021490:intron 45.0%
GCCATTTAGACAGATCCCAA+AGG - chr1_1:38378756-38378775 None:intergenic 45.0%
GGATCTGTCTAAATGGCTAC+TGG + chr1_1:38378759-38378778 Msa0021490:intron 45.0%
AGCATGAATGACGAACTGAC+TGG + chr1_1:38378864-38378883 Msa0021490:intron 45.0%
GCATGAATGACGAACTGACT+GGG + chr1_1:38378865-38378884 Msa0021490:intron 45.0%
GGGTGTTTCCAAAGAACTAC+TGG - chr1_1:38378933-38378952 None:intergenic 45.0%
CCCTCCCATCTCTGTATTAT+CGG - chr1_1:38379249-38379268 None:intergenic 45.0%
CCGATAATACAGAGATGGGA+GGG + chr1_1:38379246-38379265 Msa0021490:intron 45.0%
GCAGAAACTAGCACAATAGG+TGG + chr1_1:38379530-38379549 Msa0021490:intron 45.0%
ACTGGTTGAACCATCCAGTT+TGG - chr1_1:38379610-38379629 None:intergenic 45.0%
TGTAGTAAAGGGCTAAAGGC+TGG - chr1_1:38379644-38379663 None:intergenic 45.0%
CCTAAGTCTGGTAGCTTCTA+GGG - chr1_1:38379791-38379810 None:intergenic 45.0%
CCTAGAAGCTACCAGACTTA+GGG + chr1_1:38379789-38379808 Msa0021490:intron 45.0%
! CCAAGTAGGCAAGAAAGCAT+TGG - chr1_1:38379953-38379972 None:intergenic 45.0%
CCAATGCTTTCTTGCCTACT+TGG + chr1_1:38379950-38379969 Msa0021490:intron 45.0%
ACTCTCCAACAGCCAAGATA+AGG + chr1_1:38380281-38380300 Msa0021490:three_prime_UTR 45.0%
GTTATGTCAGTTTGTGCTCC+TGG + chr1_1:38380620-38380639 Msa0021490:three_prime_UTR 45.0%
! TGGCTCTGTGAATAAGCCTG+TGG + chr1_1:38377947-38377966 Msa0021490:CDS 50.0%
TCCAAAGAAGCCACATCCAC+AGG - chr1_1:38377966-38377985 None:intergenic 50.0%
ACGACACTCCCTAAAAGAGG+AGG + chr1_1:38378053-38378072 Msa0021490:CDS 50.0%
! AGACATGTAGGAGAGTGCAG+TGG + chr1_1:38378096-38378115 Msa0021490:CDS 50.0%
!! GTGCAGTGGACTGATACCAT+TGG + chr1_1:38378110-38378129 Msa0021490:CDS 50.0%
TTCACGCAGTCGCACATTGT+TGG + chr1_1:38379013-38379032 Msa0021490:intron 50.0%
TGTCTGACTGAGTGAATGCG+TGG + chr1_1:38379139-38379158 Msa0021490:intron 50.0%
GCCGATAATACAGAGATGGG+AGG + chr1_1:38379245-38379264 Msa0021490:intron 50.0%
! AGGCTGGTTCATAGTTCGAC+TGG - chr1_1:38379628-38379647 None:intergenic 50.0%
CCCTAGAAGCTACCAGACTT+AGG + chr1_1:38379788-38379807 Msa0021490:intron 50.0%
CCCTAAGTCTGGTAGCTTCT+AGG - chr1_1:38379792-38379811 None:intergenic 50.0%
TGAACTGGTCACCCTAAGTC+TGG - chr1_1:38379803-38379822 None:intergenic 50.0%
TGCTACAGTGTACCCCAAGT+AGG - chr1_1:38379967-38379986 None:intergenic 50.0%
!! GGACAGTGCTGATTTGAGCA+CGG + chr1_1:38380405-38380424 Msa0021490:three_prime_UTR 50.0%
GTATACAAACTCCAGGGACC+AGG - chr1_1:38380641-38380660 None:intergenic 50.0%
GCCTGTGGATGTGGCTTCTT+TGG + chr1_1:38377962-38377981 Msa0021490:CDS 55.0%
GTGTCAGTGACAGTGTGTGC+TGG + chr1_1:38378245-38378264 Msa0021490:intron 55.0%
TCCGGAGTGATTCTTGGCCG+AGG + chr1_1:38378587-38378606 Msa0021490:intron 60.0%
CCCTCGGCCAAGAATCACTC+CGG - chr1_1:38378591-38378610 None:intergenic 60.0%
CCGGAGTGATTCTTGGCCGA+GGG + chr1_1:38378588-38378607 Msa0021490:intron 60.0%
TTCTTGGCCGAGGGAAGCTC+TGG + chr1_1:38378597-38378616 Msa0021490:intron 60.0%
CAGTTTGTGCTCCTGGTCCC+TGG + chr1_1:38380627-38380646 Msa0021490:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 38377483 38380821 38377483 ID=Msa0021490;Name=Msa0021490
chr1_1 mRNA 38377483 38380821 38377483 ID=Msa0021490-mRNA-1;Parent=Msa0021490;Name=Msa0021490-mRNA-1;_AED=0.00;_eAED=0.00;_QI=426|1|1|1|1|1|2|637|103
chr1_1 exon 38377483 38378168 38377483 ID=Msa0021490-mRNA-1:exon:11864;Parent=Msa0021490-mRNA-1
chr1_1 exon 38380133 38380821 38380133 ID=Msa0021490-mRNA-1:exon:11865;Parent=Msa0021490-mRNA-1
chr1_1 five_prime_UTR 38377483 38377908 38377483 ID=Msa0021490-mRNA-1:five_prime_utr;Parent=Msa0021490-mRNA-1
chr1_1 CDS 38377909 38378168 38377909 ID=Msa0021490-mRNA-1:cds;Parent=Msa0021490-mRNA-1
chr1_1 CDS 38380133 38380184 38380133 ID=Msa0021490-mRNA-1:cds;Parent=Msa0021490-mRNA-1
chr1_1 three_prime_UTR 38380185 38380821 38380185 ID=Msa0021490-mRNA-1:three_prime_utr;Parent=Msa0021490-mRNA-1
Gene Sequence

>Msa0021490

ATGATGGATGATACTGTGACCAAAAAGGATACTGCTAATGGCTCTGTGAATAAGCCTGTGGATGTGGCTTCTTTGGATTGTAAAAAGGTTGAAGATCATGGTCATGTCAATGGAAAAAATGATAGTGATTCCAATTCTTTGTTGACGACACTCCCTAAAAGAGGAGGAATGGCTCAAAAGTTGGATAAGACATGTAGGAGAGTGCAGTGGACTGATACCATTGGAAACAAGCTTGTTGAGGTGTTGGAATATGAACCAAGTGATGTTAGTGACTCAGATGATGAGGATGCTTGTATCTGCTCAATAATGTAG
Protein sequence

>Msa0021490

MMDDTVTKKDTANGSVNKPVDVASLDCKKVEDHGHVNGKNDSDSNSLLTTLPKRGGMAQKLDKTCRRVQWTDTIGNKLVEVLEYEPSDVSDSDDEDACICSIM*