AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0049770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0049770 MtrunA17_Chr4g0057281 95.105 286 14 0 1 286 1 286 0.0 552
Msa0049770 MtrunA17_Chr5g0397981 73.868 287 70 3 1 286 19 301 1.39e-158 443
Msa0049770 MtrunA17_Chr8g0350401 60.854 281 103 2 1 274 1 281 2.94e-126 361
Msa0049770 MtrunA17_Chr1g0203751 62.308 260 97 1 19 278 28 286 7.01e-121 347
Msa0049770 MtrunA17_Chr6g0472801 58.672 271 110 2 13 282 16 285 2.76e-117 338
Msa0049770 MtrunA17_Chr7g0265551 55.670 291 117 2 1 280 73 362 7.85e-113 330
Msa0049770 MtrunA17_Chr7g0272101 26.642 274 168 7 22 278 4 261 9.35e-29 110
Msa0049770 MtrunA17_Chr4g0010881 27.132 258 165 5 22 277 4 240 4.80e-27 105
Msa0049770 MtrunA17_Chr1g0192371 25.862 290 165 9 18 273 7 280 3.65e-22 93.2
Msa0049770 MtrunA17_Chr7g0272091 25.357 280 182 5 18 273 6 282 2.37e-21 91.3
Msa0049770 MtrunA17_Chr1g0189611 35.417 144 92 1 21 163 6 149 5.38e-21 89.7
Msa0049770 MtrunA17_Chr1g0189821 28.090 267 175 6 21 275 6 267 8.12e-21 89.4
Msa0049770 MtrunA17_Chr1g0189671 36.111 144 88 2 21 163 6 146 1.07e-20 89.4
Msa0049770 MtrunA17_Chr1g0189641 35.417 144 89 2 21 163 6 146 7.97e-20 87.0
Msa0049770 MtrunA17_Chr1g0189721 34.247 146 92 2 19 163 4 146 6.10e-19 84.3
Msa0049770 MtrunA17_Chr1g0189751 28.223 287 174 8 19 286 4 277 3.43e-18 82.8
Msa0049770 MtrunA17_Chr1g0203331 36.154 130 79 2 36 164 6 132 3.67e-18 81.6
Msa0049770 MtrunA17_Chr1g0189591 36.054 147 88 3 21 163 15 159 4.37e-18 82.4
Msa0049770 MtrunA17_Chr1g0203281 33.333 144 92 2 21 163 6 146 1.54e-17 80.5
Msa0049770 MtrunA17_Chr1g0189781 32.667 150 99 2 16 163 5 154 2.44e-17 80.1
Msa0049770 MtrunA17_Chr1g0189621 33.562 146 92 3 21 165 6 147 2.62e-17 79.7
Msa0049770 MtrunA17_Chr1g0189771 31.944 144 96 2 22 163 15 158 1.52e-15 73.2
Msa0049770 MtrunA17_Chr3g0097191 32.886 149 90 5 19 164 10 151 2.21e-15 74.3
Msa0049770 MtrunA17_Chr1g0190071 32.653 147 93 3 21 163 6 150 2.19e-14 71.6
Msa0049770 MtrunA17_Chr1g0189661 33.333 147 91 3 21 163 6 149 2.54e-13 68.9
Msa0049770 MtrunA17_Chr1g0189711 27.805 205 127 5 21 219 6 195 2.59e-12 65.9
Msa0049770 MtrunA17_Chr3g0095261 32.847 137 80 6 19 152 10 137 3.80e-12 65.5
Msa0049770 MtrunA17_Chr3g0078331 27.326 172 106 4 7 163 5 172 4.32e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0049770 AT1G12710.1 68.030 269 82 3 16 282 25 291 6.27e-135 383
Msa0049770 AT3G61060.1 62.782 266 97 2 14 278 20 284 6.48e-127 363
Msa0049770 AT1G12710.2 58.842 311 82 4 16 282 25 333 3.21e-126 363
Msa0049770 AT3G61060.2 62.547 267 97 3 14 278 20 285 3.12e-125 359
Msa0049770 AT1G63090.1 65.769 260 86 2 16 274 23 280 1.20e-122 352
Msa0049770 AT5G52120.1 52.174 276 127 1 7 277 9 284 4.94e-104 305
Msa0049770 AT3G53000.1 54.104 268 110 3 17 273 19 284 1.07e-99 294
Msa0049770 AT2G02360.1 36.129 155 85 4 10 161 8 151 5.80e-25 101
Msa0049770 AT2G02340.1 31.429 175 113 3 5 176 22 192 9.88e-23 95.9
Msa0049770 AT2G02230.1 34.266 143 87 2 22 163 35 171 4.64e-21 91.7
Msa0049770 AT1G09155.1 24.735 283 184 6 22 277 3 283 2.98e-20 88.6
Msa0049770 AT2G02240.1 34.507 142 86 3 22 162 64 199 5.06e-20 88.6
Msa0049770 AT5G24560.1 28.276 145 97 2 21 164 5 143 5.98e-18 80.5
Msa0049770 AT2G02350.2 31.544 149 86 5 18 160 23 161 8.34e-18 82.0
Msa0049770 AT2G02250.1 27.875 287 165 12 17 283 44 308 8.86e-18 82.0
Msa0049770 AT1G80110.1 24.528 265 180 8 19 273 1 255 2.19e-17 80.1
Msa0049770 AT2G02310.1 25.651 269 176 8 21 275 47 305 3.98e-17 80.1
Msa0049770 AT1G56240.1 26.071 280 176 7 22 273 4 280 7.94e-16 76.3
Msa0049770 AT1G56250.1 24.232 293 165 6 22 273 4 280 1.32e-15 75.5
Msa0049770 AT2G02300.1 25.993 277 163 9 18 277 33 284 3.21e-14 71.6
Msa0049770 AT2G02320.1 24.746 295 181 12 4 275 24 300 8.34e-14 70.9

Find 77 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAACAGCTACACAGCTTTC+TGG 0.183101 1_2:-3272984 None:intergenic
TTATTCTTCCGAATACATTT+AGG 0.199539 1_2:+3274288 Msa0049770:CDS
GATAATTTGTTTAATTAGTA+TGG 0.212453 1_2:+3274809 Msa0049770:three_prime_UTR
TTGAGCTGAGTTAAGGTTAA+TGG 0.240519 1_2:+3272899 Msa0049770:exon
TTGATTCTTCAGTGGGAATA+TGG 0.245615 1_2:-3273403 None:intergenic
ATCATAATTAGAGGGAAGTT+TGG 0.273067 1_2:-3273099 None:intergenic
GCTAAAGGGTTGTCAATAAC+TGG 0.296742 1_2:+3273356 Msa0049770:CDS
CTTCAAACCACCAGATTTGT+TGG 0.309545 1_2:-3274221 None:intergenic
AATTCTCCTAAACTTGGTTT+TGG 0.321554 1_2:-3272960 None:intergenic
TATTCTTCCGAATACATTTA+GGG 0.326850 1_2:+3274289 Msa0049770:CDS
TATTATTATTGTAGAAAGTT+TGG 0.336627 1_2:+3273294 Msa0049770:intron
GGGAAACCCGCCAAGAGATT+TGG 0.340849 1_2:+3274309 Msa0049770:CDS
CCCGCTGTCACGTTCGCTTT+CGG 0.346082 1_2:+3272733 Msa0049770:five_prime_UTR
CTATATGTTCCTGCTGGAAA+TGG 0.353545 1_2:-3274264 None:intergenic
CGGGTTTCCCTAAATGTATT+CGG 0.356289 1_2:-3274296 None:intergenic
TGAGCTGAGTTAAGGTTAAT+GGG 0.368335 1_2:+3272900 Msa0049770:exon
AATTATAACATCATAATTAG+AGG 0.373488 1_2:-3273108 None:intergenic
TAAAGTGTGTTTGTCTATAT+CGG 0.379273 1_2:+3273334 Msa0049770:CDS
GTCCATAGTTGGAATCTAAC+AGG 0.395466 1_2:-3274378 None:intergenic
AAGCTGTGTAGCTGTTATAA+TGG 0.396206 1_2:+3272989 Msa0049770:CDS
TCATCACCAAAACCAAGTTT+AGG 0.402083 1_2:+3272954 Msa0049770:CDS
TTGCGTATCTCCAACAAATC+TGG 0.415817 1_2:+3274211 Msa0049770:CDS
GTTTGAATTGAGCTGAGTTA+AGG 0.418209 1_2:+3272892 Msa0049770:five_prime_UTR
AGCCTGTTAGATTCCAACTA+TGG 0.436078 1_2:+3274376 Msa0049770:CDS
GTTTCAAGTTTGTATATATG+TGG 0.438544 1_2:-3272841 None:intergenic
TGGTAATAGCGCCATTTACC+TGG 0.441087 1_2:-3274444 None:intergenic
TGCAACACAGAACATGTTCA+TGG 0.443142 1_2:+3274342 Msa0049770:CDS
GGATTGATGATCGAAGATAT+TGG 0.446080 1_2:+3273378 Msa0049770:CDS
CCGCCAAGAGATTTGGAAGA+AGG 0.447038 1_2:+3274316 Msa0049770:CDS
AGCTGTTATAATGGAATACT+TGG 0.448318 1_2:+3272998 Msa0049770:CDS
AACCCTTCTTCCAAATCTCT+TGG 0.453456 1_2:-3274319 None:intergenic
CCTTCTCATTTGGGGAAAAG+AGG 0.454751 1_2:+3273158 Msa0049770:CDS
AGCTTCAATACTTTCGATGA+AGG 0.456690 1_2:+3273200 Msa0049770:CDS
CTATGCATGTATCAAAGATT+AGG 0.458711 1_2:+3274656 Msa0049770:three_prime_UTR
CCTTCTTCCAAATCTCTTGG+CGG 0.463503 1_2:-3274316 None:intergenic
TCTGGTAATTCTCCTAAACT+TGG 0.464696 1_2:-3272966 None:intergenic
CACAGAACATGTTCATGGTT+GGG 0.465386 1_2:+3274347 Msa0049770:CDS
TATATGTTCCTGCTGGAAAT+GGG 0.468372 1_2:-3274263 None:intergenic
TGTTCTATCATAATCTTGTA+TGG 0.469913 1_2:+3274834 Msa0049770:three_prime_UTR
CGCCAAGAGATTTGGAAGAA+GGG 0.472287 1_2:+3274317 Msa0049770:CDS
TGTTTGTCTATATCGGCTAA+AGG 0.472662 1_2:+3273341 Msa0049770:CDS
CTTCTTCCAAATCTCTTGGC+GGG 0.472849 1_2:-3274315 None:intergenic
TCAGCTCAATTCAAACAACT+TGG 0.487550 1_2:-3272885 None:intergenic
GTTTGTCTATATCGGCTAAA+GGG 0.489431 1_2:+3273342 Msa0049770:CDS
CTTCTCATTTGGGGAAAAGA+GGG 0.492520 1_2:+3273159 Msa0049770:CDS
AATAAGCTATATGTTCCTGC+TGG 0.503889 1_2:-3274270 None:intergenic
AGTTTGGTTGGATAGAAGCA+TGG 0.503977 1_2:+3273310 Msa0049770:CDS
ATTATTGTAGAAAGTTTGGT+TGG 0.506585 1_2:+3273298 Msa0049770:intron
TTTGAACTACTCTTAACCTA+AGG 0.508950 1_2:+3274614 Msa0049770:exon
TCTTACCTTGATTCTTCAGT+GGG 0.519553 1_2:-3273410 None:intergenic
ACACAGAACATGTTCATGGT+TGG 0.524349 1_2:+3274346 Msa0049770:CDS
GTATCCTAGTGAGTTTAGAA+AGG 0.524884 1_2:+3274581 Msa0049770:CDS
GATCATCTGAAGTCCATAGT+TGG 0.529126 1_2:-3274389 None:intergenic
CAGCTCAATTCAAACAACTT+GGG 0.533271 1_2:-3272884 None:intergenic
ATTGAGTTCCCATTTCCAGC+AGG 0.540368 1_2:+3274255 Msa0049770:CDS
GTTTGGTTGGATAGAAGCAT+GGG 0.542266 1_2:+3273311 Msa0049770:CDS
ATTGATTGCACACACACTAA+AGG 0.551213 1_2:+3274531 Msa0049770:CDS
CCGAAAGCGAACGTGACAGC+GGG 0.552491 1_2:-3272733 None:intergenic
TTAACCTTTCTAAACTCACT+AGG 0.563266 1_2:-3274585 None:intergenic
ATCTTACCTTGATTCTTCAG+TGG 0.563619 1_2:-3273411 None:intergenic
ACAAATCTGGTGGTTTGAAG+TGG 0.565964 1_2:+3274224 Msa0049770:CDS
ATCTTCAACCACAAAATCGC+CGG 0.570051 1_2:-3274469 None:intergenic
CTAAAGGGTTGTCAATAACT+GGG 0.571485 1_2:+3273357 Msa0049770:CDS
ATATTCCCACTGAAGAATCA+AGG 0.574725 1_2:+3273405 Msa0049770:CDS
AGAATATTGTATACTTGTGC+CGG 0.575065 1_2:+3274860 Msa0049770:three_prime_UTR
GCTGTCACGTTCGCTTTCGG+AGG 0.580011 1_2:+3272736 Msa0049770:five_prime_UTR
ATTATAACATCATAATTAGA+GGG 0.581280 1_2:-3273107 None:intergenic
CAACCACAAAATCGCCGGCA+TGG 0.585784 1_2:-3274464 None:intergenic
GAAGCTAATTTGCAAATCTG+AGG 0.595553 1_2:-3273026 None:intergenic
CGTATCTCCAACAAATCTGG+TGG 0.613155 1_2:+3274214 Msa0049770:CDS
GCTAATTTGCAAATCTGAGG+AGG 0.616624 1_2:-3273023 None:intergenic
AAATGGCGCTATTACCATGC+CGG 0.633820 1_2:+3274450 Msa0049770:CDS
TACTTTCGATGAAGGAACCA+AGG 0.641635 1_2:+3273208 Msa0049770:CDS
GATTGCACACACACTAAAGG+TGG 0.653493 1_2:+3274534 Msa0049770:CDS
AAGAAGCACCATGAAAAGCA+CGG 0.655921 1_2:-3273055 None:intergenic
TCCGAAAGCGAACGTGACAG+CGG 0.658699 1_2:-3272734 None:intergenic
ATCTGGTGGTTTGAAGTGGA+CGG 0.666571 1_2:+3274228 Msa0049770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACTAAAATTAATTAAAAG+AGG - chr1_2:3273735-3273754 None:intergenic 10.0%
!!! TATATTTTTATTTTTACCTT+AGG - chr1_2:3274633-3274652 None:intergenic 10.0%
!! ATACTAAAATTAATTAAAAG+AGG - chr1_2:3273735-3273754 None:intergenic 10.0%
!!! TATATTTTTATTTTTACCTT+AGG - chr1_2:3274633-3274652 None:intergenic 10.0%
!! ATTATAACATCATAATTAGA+GGG - chr1_2:3273110-3273129 None:intergenic 15.0%
!! AATTATAACATCATAATTAG+AGG - chr1_2:3273111-3273130 None:intergenic 15.0%
!! ATAATTCAAAAAATCTTTGA+TGG + chr1_2:3273125-3273144 Msa0049770:CDS 15.0%
!! TATTATTATTGTAGAAAGTT+TGG + chr1_2:3273294-3273313 Msa0049770:intron 15.0%
!!! TTGAATTGATTTTATTGATT+TGG + chr1_2:3273607-3273626 Msa0049770:intron 15.0%
!!! TTGATTTTCTTTTATTATTC+TGG + chr1_2:3274008-3274027 Msa0049770:intron 15.0%
!!! GATAATTTGTTTAATTAGTA+TGG + chr1_2:3274809-3274828 Msa0049770:three_prime_UTR 15.0%
!! ATTATAACATCATAATTAGA+GGG - chr1_2:3273110-3273129 None:intergenic 15.0%
!! AATTATAACATCATAATTAG+AGG - chr1_2:3273111-3273130 None:intergenic 15.0%
!! ATAATTCAAAAAATCTTTGA+TGG + chr1_2:3273125-3273144 Msa0049770:CDS 15.0%
!! TATTATTATTGTAGAAAGTT+TGG + chr1_2:3273294-3273313 Msa0049770:intron 15.0%
!!! TTGAATTGATTTTATTGATT+TGG + chr1_2:3273607-3273626 Msa0049770:intron 15.0%
!!! TTGATTTTCTTTTATTATTC+TGG + chr1_2:3274008-3274027 Msa0049770:intron 15.0%
!!! GATAATTTGTTTAATTAGTA+TGG + chr1_2:3274809-3274828 Msa0049770:three_prime_UTR 15.0%
!!! TTTATGTTAATTTGTTACCT+TGG - chr1_2:3273228-3273247 None:intergenic 20.0%
!!! TTATAGGTAGAATTGATTTT+GGG + chr1_2:3273791-3273810 Msa0049770:intron 20.0%
!! GAAATTAAAAAGACATAACT+TGG - chr1_2:3274090-3274109 None:intergenic 20.0%
!!! TTAGTTTGGAAATAAAGTTT+CGG + chr1_2:3274145-3274164 Msa0049770:intron 20.0%
!!! AAAAAAAATAGGGTTCTTTT+AGG + chr1_2:3274731-3274750 Msa0049770:three_prime_UTR 20.0%
!!! TTTATGTTAATTTGTTACCT+TGG - chr1_2:3273228-3273247 None:intergenic 20.0%
!!! TTATAGGTAGAATTGATTTT+GGG + chr1_2:3273791-3273810 Msa0049770:intron 20.0%
!! GAAATTAAAAAGACATAACT+TGG - chr1_2:3274090-3274109 None:intergenic 20.0%
!!! TTAGTTTGGAAATAAAGTTT+CGG + chr1_2:3274145-3274164 Msa0049770:intron 20.0%
!!! AAAAAAAATAGGGTTCTTTT+AGG + chr1_2:3274731-3274750 Msa0049770:three_prime_UTR 20.0%
!!! GTTTCAAGTTTGTATATATG+TGG - chr1_2:3272844-3272863 None:intergenic 25.0%
!!! AAAATCGTTGCTTTTGTATA+TGG + chr1_2:3273246-3273265 Msa0049770:intron 25.0%
! ATTATTGTAGAAAGTTTGGT+TGG + chr1_2:3273298-3273317 Msa0049770:intron 25.0%
! TAAAGTGTGTTTGTCTATAT+CGG + chr1_2:3273334-3273353 Msa0049770:CDS 25.0%
!! TTTCATGTTCTAGTGTATTT+TGG + chr1_2:3273529-3273548 Msa0049770:intron 25.0%
! TTTATGTTTGCATGCATTTA+CGG + chr1_2:3273660-3273679 Msa0049770:intron 25.0%
! TTTACGGAAAAAATTATGCT+TGG + chr1_2:3273676-3273695 Msa0049770:intron 25.0%
! AAAATTATGCTTGGAGAATT+TGG + chr1_2:3273685-3273704 Msa0049770:intron 25.0%
!!! GTATTGATTCTTTGTTAACT+CGG + chr1_2:3273751-3273770 Msa0049770:intron 25.0%
!!! CTTATAGGTAGAATTGATTT+TGG + chr1_2:3273790-3273809 Msa0049770:intron 25.0%
!!! TATAGGTAGAATTGATTTTG+GGG + chr1_2:3273792-3273811 Msa0049770:intron 25.0%
!! CTATTAGTGTTGAATTAGTT+TGG + chr1_2:3274131-3274150 Msa0049770:intron 25.0%
! GCAAATGATAAAGATAACAT+TGG - chr1_2:3274178-3274197 None:intergenic 25.0%
! TTATTCTTCCGAATACATTT+AGG + chr1_2:3274288-3274307 Msa0049770:CDS 25.0%
! TATTCTTCCGAATACATTTA+GGG + chr1_2:3274289-3274308 Msa0049770:CDS 25.0%
!! TTAGAATTTTGTAGAATCCA+AGG + chr1_2:3274755-3274774 Msa0049770:three_prime_UTR 25.0%
!! TAGAATTTTGTAGAATCCAA+GGG + chr1_2:3274756-3274775 Msa0049770:three_prime_UTR 25.0%
! TGTTCTATCATAATCTTGTA+TGG + chr1_2:3274834-3274853 Msa0049770:three_prime_UTR 25.0%
!!! GTTTCAAGTTTGTATATATG+TGG - chr1_2:3272844-3272863 None:intergenic 25.0%
!!! AAAATCGTTGCTTTTGTATA+TGG + chr1_2:3273246-3273265 Msa0049770:intron 25.0%
! ATTATTGTAGAAAGTTTGGT+TGG + chr1_2:3273298-3273317 Msa0049770:intron 25.0%
! TAAAGTGTGTTTGTCTATAT+CGG + chr1_2:3273334-3273353 Msa0049770:CDS 25.0%
!! TTTCATGTTCTAGTGTATTT+TGG + chr1_2:3273529-3273548 Msa0049770:intron 25.0%
! TTTATGTTTGCATGCATTTA+CGG + chr1_2:3273660-3273679 Msa0049770:intron 25.0%
! TTTACGGAAAAAATTATGCT+TGG + chr1_2:3273676-3273695 Msa0049770:intron 25.0%
! AAAATTATGCTTGGAGAATT+TGG + chr1_2:3273685-3273704 Msa0049770:intron 25.0%
!!! GTATTGATTCTTTGTTAACT+CGG + chr1_2:3273751-3273770 Msa0049770:intron 25.0%
!!! CTTATAGGTAGAATTGATTT+TGG + chr1_2:3273790-3273809 Msa0049770:intron 25.0%
!!! TATAGGTAGAATTGATTTTG+GGG + chr1_2:3273792-3273811 Msa0049770:intron 25.0%
!! CTATTAGTGTTGAATTAGTT+TGG + chr1_2:3274131-3274150 Msa0049770:intron 25.0%
! GCAAATGATAAAGATAACAT+TGG - chr1_2:3274178-3274197 None:intergenic 25.0%
! TTATTCTTCCGAATACATTT+AGG + chr1_2:3274288-3274307 Msa0049770:CDS 25.0%
! TATTCTTCCGAATACATTTA+GGG + chr1_2:3274289-3274308 Msa0049770:CDS 25.0%
!! TTAGAATTTTGTAGAATCCA+AGG + chr1_2:3274755-3274774 Msa0049770:three_prime_UTR 25.0%
!! TAGAATTTTGTAGAATCCAA+GGG + chr1_2:3274756-3274775 Msa0049770:three_prime_UTR 25.0%
! TGTTCTATCATAATCTTGTA+TGG + chr1_2:3274834-3274853 Msa0049770:three_prime_UTR 25.0%
!!! TTTTGGTGATGATGATGATT+GGG - chr1_2:3272946-3272965 None:intergenic 30.0%
! AATTCTCCTAAACTTGGTTT+TGG - chr1_2:3272963-3272982 None:intergenic 30.0%
! AGCTGTTATAATGGAATACT+TGG + chr1_2:3272998-3273017 Msa0049770:CDS 30.0%
!! TTCTTTGGCTGATTTTGTTT+GGG + chr1_2:3273073-3273092 Msa0049770:CDS 30.0%
ATCATAATTAGAGGGAAGTT+TGG - chr1_2:3273102-3273121 None:intergenic 30.0%
! TTCTTCTTTTCCTTCTCATT+TGG + chr1_2:3273148-3273167 Msa0049770:CDS 30.0%
! TCTTCTTTTCCTTCTCATTT+GGG + chr1_2:3273149-3273168 Msa0049770:CDS 30.0%
TGTGAACTATGAAGTTCAAA+GGG + chr1_2:3273471-3273490 Msa0049770:intron 30.0%
AGCTAGAAATGATAGCTTAT+AGG + chr1_2:3273775-3273794 Msa0049770:intron 30.0%
GACAGCAAATATGTTATGTT+TGG - chr1_2:3273843-3273862 None:intergenic 30.0%
! TAACCAAAACTGATTCTAAG+AGG + chr1_2:3273876-3273895 Msa0049770:intron 30.0%
!!! ATCCATTTTTTCCCATGTTT+AGG + chr1_2:3273910-3273929 Msa0049770:intron 30.0%
AAAGCTAAGTATTTGACCTT+TGG - chr1_2:3273937-3273956 None:intergenic 30.0%
GAAGAGAAAGATATTGATGA+AGG + chr1_2:3273979-3273998 Msa0049770:intron 30.0%
!!! GAAACTAGACTTGCTAATTT+TGG - chr1_2:3274112-3274131 None:intergenic 30.0%
!!! TCATCGCAATGTTTTTTGAA+AGG + chr1_2:3274420-3274439 Msa0049770:CDS 30.0%
TTAACCTTTCTAAACTCACT+AGG - chr1_2:3274588-3274607 None:intergenic 30.0%
TTTGAACTACTCTTAACCTA+AGG + chr1_2:3274614-3274633 Msa0049770:exon 30.0%
CTATGCATGTATCAAAGATT+AGG + chr1_2:3274656-3274675 Msa0049770:three_prime_UTR 30.0%
! AGAGAATCGAGTTTTCAATA+GGG + chr1_2:3274684-3274703 Msa0049770:three_prime_UTR 30.0%
! GTTTTCAATAGGGTTCTTTT+AGG + chr1_2:3274694-3274713 Msa0049770:three_prime_UTR 30.0%
! AGAATTTTGTAGAATCCAAG+GGG + chr1_2:3274757-3274776 Msa0049770:three_prime_UTR 30.0%
AGAATATTGTATACTTGTGC+CGG + chr1_2:3274860-3274879 Msa0049770:three_prime_UTR 30.0%
!!! TTTTGGTGATGATGATGATT+GGG - chr1_2:3272946-3272965 None:intergenic 30.0%
! AATTCTCCTAAACTTGGTTT+TGG - chr1_2:3272963-3272982 None:intergenic 30.0%
! AGCTGTTATAATGGAATACT+TGG + chr1_2:3272998-3273017 Msa0049770:CDS 30.0%
!! TTCTTTGGCTGATTTTGTTT+GGG + chr1_2:3273073-3273092 Msa0049770:CDS 30.0%
ATCATAATTAGAGGGAAGTT+TGG - chr1_2:3273102-3273121 None:intergenic 30.0%
! TTCTTCTTTTCCTTCTCATT+TGG + chr1_2:3273148-3273167 Msa0049770:CDS 30.0%
! TCTTCTTTTCCTTCTCATTT+GGG + chr1_2:3273149-3273168 Msa0049770:CDS 30.0%
TGTGAACTATGAAGTTCAAA+GGG + chr1_2:3273471-3273490 Msa0049770:intron 30.0%
AGCTAGAAATGATAGCTTAT+AGG + chr1_2:3273775-3273794 Msa0049770:intron 30.0%
GACAGCAAATATGTTATGTT+TGG - chr1_2:3273843-3273862 None:intergenic 30.0%
! TAACCAAAACTGATTCTAAG+AGG + chr1_2:3273876-3273895 Msa0049770:intron 30.0%
!!! ATCCATTTTTTCCCATGTTT+AGG + chr1_2:3273910-3273929 Msa0049770:intron 30.0%
AAAGCTAAGTATTTGACCTT+TGG - chr1_2:3273937-3273956 None:intergenic 30.0%
GAAGAGAAAGATATTGATGA+AGG + chr1_2:3273979-3273998 Msa0049770:intron 30.0%
!!! GAAACTAGACTTGCTAATTT+TGG - chr1_2:3274112-3274131 None:intergenic 30.0%
!!! TCATCGCAATGTTTTTTGAA+AGG + chr1_2:3274420-3274439 Msa0049770:CDS 30.0%
TTAACCTTTCTAAACTCACT+AGG - chr1_2:3274588-3274607 None:intergenic 30.0%
TTTGAACTACTCTTAACCTA+AGG + chr1_2:3274614-3274633 Msa0049770:exon 30.0%
CTATGCATGTATCAAAGATT+AGG + chr1_2:3274656-3274675 Msa0049770:three_prime_UTR 30.0%
! AGAGAATCGAGTTTTCAATA+GGG + chr1_2:3274684-3274703 Msa0049770:three_prime_UTR 30.0%
! GTTTTCAATAGGGTTCTTTT+AGG + chr1_2:3274694-3274713 Msa0049770:three_prime_UTR 30.0%
! AGAATTTTGTAGAATCCAAG+GGG + chr1_2:3274757-3274776 Msa0049770:three_prime_UTR 30.0%
CAGCTCAATTCAAACAACTT+GGG - chr1_2:3272887-3272906 None:intergenic 35.0%
TCAGCTCAATTCAAACAACT+TGG - chr1_2:3272888-3272907 None:intergenic 35.0%
GTTTGAATTGAGCTGAGTTA+AGG + chr1_2:3272892-3272911 Msa0049770:five_prime_UTR 35.0%
TTGAGCTGAGTTAAGGTTAA+TGG + chr1_2:3272899-3272918 Msa0049770:exon 35.0%
TGAGCTGAGTTAAGGTTAAT+GGG + chr1_2:3272900-3272919 Msa0049770:exon 35.0%
!!! GTTTTGGTGATGATGATGAT+TGG - chr1_2:3272947-3272966 None:intergenic 35.0%
TCATCACCAAAACCAAGTTT+AGG + chr1_2:3272954-3272973 Msa0049770:CDS 35.0%
TCTGGTAATTCTCCTAAACT+TGG - chr1_2:3272969-3272988 None:intergenic 35.0%
AAGCTGTGTAGCTGTTATAA+TGG + chr1_2:3272989-3273008 Msa0049770:CDS 35.0%
! GAAGCTAATTTGCAAATCTG+AGG - chr1_2:3273029-3273048 None:intergenic 35.0%
!! CTTCTTTGGCTGATTTTGTT+TGG + chr1_2:3273072-3273091 Msa0049770:CDS 35.0%
! CTTCTTTTCCTTCTCATTTG+GGG + chr1_2:3273150-3273169 Msa0049770:CDS 35.0%
AGCTTCAATACTTTCGATGA+AGG + chr1_2:3273200-3273219 Msa0049770:CDS 35.0%
! TGTTTGTCTATATCGGCTAA+AGG + chr1_2:3273341-3273360 Msa0049770:CDS 35.0%
! GTTTGTCTATATCGGCTAAA+GGG + chr1_2:3273342-3273361 Msa0049770:CDS 35.0%
CTAAAGGGTTGTCAATAACT+GGG + chr1_2:3273357-3273376 Msa0049770:CDS 35.0%
! GGATTGATGATCGAAGATAT+TGG + chr1_2:3273378-3273397 Msa0049770:CDS 35.0%
TTGATTCTTCAGTGGGAATA+TGG - chr1_2:3273406-3273425 None:intergenic 35.0%
ATATTCCCACTGAAGAATCA+AGG + chr1_2:3273405-3273424 Msa0049770:CDS 35.0%
TCTTACCTTGATTCTTCAGT+GGG - chr1_2:3273413-3273432 None:intergenic 35.0%
ATCTTACCTTGATTCTTCAG+TGG - chr1_2:3273414-3273433 None:intergenic 35.0%
GTGTGAACTATGAAGTTCAA+AGG + chr1_2:3273470-3273489 Msa0049770:intron 35.0%
GTGAACTATGAAGTTCAAAG+GGG + chr1_2:3273472-3273491 Msa0049770:intron 35.0%
!!! GTTCTAGTGTATTTTGGTCT+TGG + chr1_2:3273535-3273554 Msa0049770:intron 35.0%
!! TTTGGTCTTGGAAATTCTGT+TGG + chr1_2:3273547-3273566 Msa0049770:intron 35.0%
! GAAATTCTGTTGGCGATTTT+CGG + chr1_2:3273557-3273576 Msa0049770:intron 35.0%
! AAATTCTGTTGGCGATTTTC+GGG + chr1_2:3273558-3273577 Msa0049770:intron 35.0%
GACCTAAACATGGGAAAAAA+TGG - chr1_2:3273915-3273934 None:intergenic 35.0%
TATATGTTCCTGCTGGAAAT+GGG - chr1_2:3274266-3274285 None:intergenic 35.0%
AATAAGCTATATGTTCCTGC+TGG - chr1_2:3274273-3274292 None:intergenic 35.0%
!!! CAATGTTTTTTGAAAGGTCC+AGG + chr1_2:3274426-3274445 Msa0049770:CDS 35.0%
!! TTTTGAAAGGTCCAGGTAAA+TGG + chr1_2:3274433-3274452 Msa0049770:CDS 35.0%
ATTGATTGCACACACACTAA+AGG + chr1_2:3274531-3274550 Msa0049770:CDS 35.0%
GTATCCTAGTGAGTTTAGAA+AGG + chr1_2:3274581-3274600 Msa0049770:CDS 35.0%
! CAGAGAATCGAGTTTTCAAT+AGG + chr1_2:3274683-3274702 Msa0049770:three_prime_UTR 35.0%
! GAATTTTGTAGAATCCAAGG+GGG + chr1_2:3274758-3274777 Msa0049770:three_prime_UTR 35.0%
! AATTTTGTAGAATCCAAGGG+GGG + chr1_2:3274759-3274778 Msa0049770:three_prime_UTR 35.0%
CAGCTCAATTCAAACAACTT+GGG - chr1_2:3272887-3272906 None:intergenic 35.0%
TCAGCTCAATTCAAACAACT+TGG - chr1_2:3272888-3272907 None:intergenic 35.0%
GTTTGAATTGAGCTGAGTTA+AGG + chr1_2:3272892-3272911 Msa0049770:five_prime_UTR 35.0%
TTGAGCTGAGTTAAGGTTAA+TGG + chr1_2:3272899-3272918 Msa0049770:exon 35.0%
TGAGCTGAGTTAAGGTTAAT+GGG + chr1_2:3272900-3272919 Msa0049770:exon 35.0%
!!! GTTTTGGTGATGATGATGAT+TGG - chr1_2:3272947-3272966 None:intergenic 35.0%
TCATCACCAAAACCAAGTTT+AGG + chr1_2:3272954-3272973 Msa0049770:CDS 35.0%
TCTGGTAATTCTCCTAAACT+TGG - chr1_2:3272969-3272988 None:intergenic 35.0%
AAGCTGTGTAGCTGTTATAA+TGG + chr1_2:3272989-3273008 Msa0049770:CDS 35.0%
! GAAGCTAATTTGCAAATCTG+AGG - chr1_2:3273029-3273048 None:intergenic 35.0%
!! CTTCTTTGGCTGATTTTGTT+TGG + chr1_2:3273072-3273091 Msa0049770:CDS 35.0%
! CTTCTTTTCCTTCTCATTTG+GGG + chr1_2:3273150-3273169 Msa0049770:CDS 35.0%
AGCTTCAATACTTTCGATGA+AGG + chr1_2:3273200-3273219 Msa0049770:CDS 35.0%
! TGTTTGTCTATATCGGCTAA+AGG + chr1_2:3273341-3273360 Msa0049770:CDS 35.0%
! GTTTGTCTATATCGGCTAAA+GGG + chr1_2:3273342-3273361 Msa0049770:CDS 35.0%
CTAAAGGGTTGTCAATAACT+GGG + chr1_2:3273357-3273376 Msa0049770:CDS 35.0%
! GGATTGATGATCGAAGATAT+TGG + chr1_2:3273378-3273397 Msa0049770:CDS 35.0%
TTGATTCTTCAGTGGGAATA+TGG - chr1_2:3273406-3273425 None:intergenic 35.0%
ATATTCCCACTGAAGAATCA+AGG + chr1_2:3273405-3273424 Msa0049770:CDS 35.0%
TCTTACCTTGATTCTTCAGT+GGG - chr1_2:3273413-3273432 None:intergenic 35.0%
ATCTTACCTTGATTCTTCAG+TGG - chr1_2:3273414-3273433 None:intergenic 35.0%
GTGTGAACTATGAAGTTCAA+AGG + chr1_2:3273470-3273489 Msa0049770:intron 35.0%
GTGAACTATGAAGTTCAAAG+GGG + chr1_2:3273472-3273491 Msa0049770:intron 35.0%
!!! GTTCTAGTGTATTTTGGTCT+TGG + chr1_2:3273535-3273554 Msa0049770:intron 35.0%
!! TTTGGTCTTGGAAATTCTGT+TGG + chr1_2:3273547-3273566 Msa0049770:intron 35.0%
! GAAATTCTGTTGGCGATTTT+CGG + chr1_2:3273557-3273576 Msa0049770:intron 35.0%
! AAATTCTGTTGGCGATTTTC+GGG + chr1_2:3273558-3273577 Msa0049770:intron 35.0%
GACCTAAACATGGGAAAAAA+TGG - chr1_2:3273915-3273934 None:intergenic 35.0%
TATATGTTCCTGCTGGAAAT+GGG - chr1_2:3274266-3274285 None:intergenic 35.0%
AATAAGCTATATGTTCCTGC+TGG - chr1_2:3274273-3274292 None:intergenic 35.0%
!!! CAATGTTTTTTGAAAGGTCC+AGG + chr1_2:3274426-3274445 Msa0049770:CDS 35.0%
!! TTTTGAAAGGTCCAGGTAAA+TGG + chr1_2:3274433-3274452 Msa0049770:CDS 35.0%
ATTGATTGCACACACACTAA+AGG + chr1_2:3274531-3274550 Msa0049770:CDS 35.0%
GTATCCTAGTGAGTTTAGAA+AGG + chr1_2:3274581-3274600 Msa0049770:CDS 35.0%
! CAGAGAATCGAGTTTTCAAT+AGG + chr1_2:3274683-3274702 Msa0049770:three_prime_UTR 35.0%
! GAATTTTGTAGAATCCAAGG+GGG + chr1_2:3274758-3274777 Msa0049770:three_prime_UTR 35.0%
! AATTTTGTAGAATCCAAGGG+GGG + chr1_2:3274759-3274778 Msa0049770:three_prime_UTR 35.0%
ATAACAGCTACACAGCTTTC+TGG - chr1_2:3272987-3273006 None:intergenic 40.0%
! GCTAATTTGCAAATCTGAGG+AGG - chr1_2:3273026-3273045 None:intergenic 40.0%
!! AAGAAGCACCATGAAAAGCA+CGG - chr1_2:3273058-3273077 None:intergenic 40.0%
! TGCTTTTCATGGTGCTTCTT+TGG + chr1_2:3273058-3273077 Msa0049770:CDS 40.0%
CTTCTCATTTGGGGAAAAGA+GGG + chr1_2:3273159-3273178 Msa0049770:CDS 40.0%
TACTTTCGATGAAGGAACCA+AGG + chr1_2:3273208-3273227 Msa0049770:CDS 40.0%
AGTTTGGTTGGATAGAAGCA+TGG + chr1_2:3273310-3273329 Msa0049770:CDS 40.0%
! GTTTGGTTGGATAGAAGCAT+GGG + chr1_2:3273311-3273330 Msa0049770:CDS 40.0%
GCTAAAGGGTTGTCAATAAC+TGG + chr1_2:3273356-3273375 Msa0049770:CDS 40.0%
!! GCTAGAATCATTTCTGAGGT+TGG + chr1_2:3273814-3273833 Msa0049770:intron 40.0%
! GGACCTCTTAGAATCAGTTT+TGG - chr1_2:3273882-3273901 None:intergenic 40.0%
! ACTGATTCTAAGAGGTCCAA+AGG + chr1_2:3273884-3273903 Msa0049770:intron 40.0%
GGAAAAAATGGATCCACCTT+TGG - chr1_2:3273903-3273922 None:intergenic 40.0%
TTTCCCATGTTTAGGTCCAA+AGG + chr1_2:3273918-3273937 Msa0049770:intron 40.0%
TGACCTTTGGACCTAAACAT+GGG - chr1_2:3273924-3273943 None:intergenic 40.0%
TTGACCTTTGGACCTAAACA+TGG - chr1_2:3273925-3273944 None:intergenic 40.0%
TTGCGTATCTCCAACAAATC+TGG + chr1_2:3274211-3274230 Msa0049770:CDS 40.0%
CTTCAAACCACCAGATTTGT+TGG - chr1_2:3274224-3274243 None:intergenic 40.0%
ACAAATCTGGTGGTTTGAAG+TGG + chr1_2:3274224-3274243 Msa0049770:CDS 40.0%
CTATATGTTCCTGCTGGAAA+TGG - chr1_2:3274267-3274286 None:intergenic 40.0%
CGGGTTTCCCTAAATGTATT+CGG - chr1_2:3274299-3274318 None:intergenic 40.0%
AACCCTTCTTCCAAATCTCT+TGG - chr1_2:3274322-3274341 None:intergenic 40.0%
TGCAACACAGAACATGTTCA+TGG + chr1_2:3274342-3274361 Msa0049770:CDS 40.0%
ACACAGAACATGTTCATGGT+TGG + chr1_2:3274346-3274365 Msa0049770:CDS 40.0%
CACAGAACATGTTCATGGTT+GGG + chr1_2:3274347-3274366 Msa0049770:CDS 40.0%
AGCCTGTTAGATTCCAACTA+TGG + chr1_2:3274376-3274395 Msa0049770:CDS 40.0%
GTCCATAGTTGGAATCTAAC+AGG - chr1_2:3274381-3274400 None:intergenic 40.0%
! GATCATCTGAAGTCCATAGT+TGG - chr1_2:3274392-3274411 None:intergenic 40.0%
ATCTTCAACCACAAAATCGC+CGG - chr1_2:3274472-3274491 None:intergenic 40.0%
! ATTTTGTAGAATCCAAGGGG+GGG + chr1_2:3274760-3274779 Msa0049770:three_prime_UTR 40.0%
ATAACAGCTACACAGCTTTC+TGG - chr1_2:3272987-3273006 None:intergenic 40.0%
! GCTAATTTGCAAATCTGAGG+AGG - chr1_2:3273026-3273045 None:intergenic 40.0%
!! AAGAAGCACCATGAAAAGCA+CGG - chr1_2:3273058-3273077 None:intergenic 40.0%
! TGCTTTTCATGGTGCTTCTT+TGG + chr1_2:3273058-3273077 Msa0049770:CDS 40.0%
CTTCTCATTTGGGGAAAAGA+GGG + chr1_2:3273159-3273178 Msa0049770:CDS 40.0%
TACTTTCGATGAAGGAACCA+AGG + chr1_2:3273208-3273227 Msa0049770:CDS 40.0%
AGTTTGGTTGGATAGAAGCA+TGG + chr1_2:3273310-3273329 Msa0049770:CDS 40.0%
! GTTTGGTTGGATAGAAGCAT+GGG + chr1_2:3273311-3273330 Msa0049770:CDS 40.0%
GCTAAAGGGTTGTCAATAAC+TGG + chr1_2:3273356-3273375 Msa0049770:CDS 40.0%
!! GCTAGAATCATTTCTGAGGT+TGG + chr1_2:3273814-3273833 Msa0049770:intron 40.0%
! GGACCTCTTAGAATCAGTTT+TGG - chr1_2:3273882-3273901 None:intergenic 40.0%
! ACTGATTCTAAGAGGTCCAA+AGG + chr1_2:3273884-3273903 Msa0049770:intron 40.0%
GGAAAAAATGGATCCACCTT+TGG - chr1_2:3273903-3273922 None:intergenic 40.0%
TTTCCCATGTTTAGGTCCAA+AGG + chr1_2:3273918-3273937 Msa0049770:intron 40.0%
TGACCTTTGGACCTAAACAT+GGG - chr1_2:3273924-3273943 None:intergenic 40.0%
TTGACCTTTGGACCTAAACA+TGG - chr1_2:3273925-3273944 None:intergenic 40.0%
TTGCGTATCTCCAACAAATC+TGG + chr1_2:3274211-3274230 Msa0049770:CDS 40.0%
CTTCAAACCACCAGATTTGT+TGG - chr1_2:3274224-3274243 None:intergenic 40.0%
ACAAATCTGGTGGTTTGAAG+TGG + chr1_2:3274224-3274243 Msa0049770:CDS 40.0%
CTATATGTTCCTGCTGGAAA+TGG - chr1_2:3274267-3274286 None:intergenic 40.0%
CGGGTTTCCCTAAATGTATT+CGG - chr1_2:3274299-3274318 None:intergenic 40.0%
AACCCTTCTTCCAAATCTCT+TGG - chr1_2:3274322-3274341 None:intergenic 40.0%
TGCAACACAGAACATGTTCA+TGG + chr1_2:3274342-3274361 Msa0049770:CDS 40.0%
ACACAGAACATGTTCATGGT+TGG + chr1_2:3274346-3274365 Msa0049770:CDS 40.0%
CACAGAACATGTTCATGGTT+GGG + chr1_2:3274347-3274366 Msa0049770:CDS 40.0%
AGCCTGTTAGATTCCAACTA+TGG + chr1_2:3274376-3274395 Msa0049770:CDS 40.0%
GTCCATAGTTGGAATCTAAC+AGG - chr1_2:3274381-3274400 None:intergenic 40.0%
! GATCATCTGAAGTCCATAGT+TGG - chr1_2:3274392-3274411 None:intergenic 40.0%
ATCTTCAACCACAAAATCGC+CGG - chr1_2:3274472-3274491 None:intergenic 40.0%
! ATTTTGTAGAATCCAAGGGG+GGG + chr1_2:3274760-3274779 Msa0049770:three_prime_UTR 40.0%
! TCTCTCAACCGTGCTTTTCA+TGG + chr1_2:3273047-3273066 Msa0049770:CDS 45.0%
! CCTCTTTTCCCCAAATGAGA+AGG - chr1_2:3273161-3273180 None:intergenic 45.0%
CCTTCTCATTTGGGGAAAAG+AGG + chr1_2:3273158-3273177 Msa0049770:CDS 45.0%
TGGGGCTAGAATCATTTCTG+AGG + chr1_2:3273810-3273829 Msa0049770:intron 45.0%
! GATTCTAAGAGGTCCAAAGG+TGG + chr1_2:3273887-3273906 Msa0049770:intron 45.0%
CGTATCTCCAACAAATCTGG+TGG + chr1_2:3274214-3274233 Msa0049770:CDS 45.0%
! ATCTGGTGGTTTGAAGTGGA+CGG + chr1_2:3274228-3274247 Msa0049770:CDS 45.0%
ATTGAGTTCCCATTTCCAGC+AGG + chr1_2:3274255-3274274 Msa0049770:CDS 45.0%
CTTCTTCCAAATCTCTTGGC+GGG - chr1_2:3274318-3274337 None:intergenic 45.0%
CCTTCTTCCAAATCTCTTGG+CGG - chr1_2:3274319-3274338 None:intergenic 45.0%
CGCCAAGAGATTTGGAAGAA+GGG + chr1_2:3274317-3274336 Msa0049770:CDS 45.0%
TGGTAATAGCGCCATTTACC+TGG - chr1_2:3274447-3274466 None:intergenic 45.0%
AAATGGCGCTATTACCATGC+CGG + chr1_2:3274450-3274469 Msa0049770:CDS 45.0%
! GGCGATTTTGTGGTTGAAGA+TGG + chr1_2:3274471-3274490 Msa0049770:CDS 45.0%
GATTGCACACACACTAAAGG+TGG + chr1_2:3274534-3274553 Msa0049770:CDS 45.0%
ACATATATACATCCCCCCCT+TGG - chr1_2:3274775-3274794 None:intergenic 45.0%
! TCTCTCAACCGTGCTTTTCA+TGG + chr1_2:3273047-3273066 Msa0049770:CDS 45.0%
! CCTCTTTTCCCCAAATGAGA+AGG - chr1_2:3273161-3273180 None:intergenic 45.0%
CCTTCTCATTTGGGGAAAAG+AGG + chr1_2:3273158-3273177 Msa0049770:CDS 45.0%
TGGGGCTAGAATCATTTCTG+AGG + chr1_2:3273810-3273829 Msa0049770:intron 45.0%
! GATTCTAAGAGGTCCAAAGG+TGG + chr1_2:3273887-3273906 Msa0049770:intron 45.0%
CGTATCTCCAACAAATCTGG+TGG + chr1_2:3274214-3274233 Msa0049770:CDS 45.0%
! ATCTGGTGGTTTGAAGTGGA+CGG + chr1_2:3274228-3274247 Msa0049770:CDS 45.0%
ATTGAGTTCCCATTTCCAGC+AGG + chr1_2:3274255-3274274 Msa0049770:CDS 45.0%
CTTCTTCCAAATCTCTTGGC+GGG - chr1_2:3274318-3274337 None:intergenic 45.0%
CCTTCTTCCAAATCTCTTGG+CGG - chr1_2:3274319-3274338 None:intergenic 45.0%
CGCCAAGAGATTTGGAAGAA+GGG + chr1_2:3274317-3274336 Msa0049770:CDS 45.0%
TGGTAATAGCGCCATTTACC+TGG - chr1_2:3274447-3274466 None:intergenic 45.0%
AAATGGCGCTATTACCATGC+CGG + chr1_2:3274450-3274469 Msa0049770:CDS 45.0%
! GGCGATTTTGTGGTTGAAGA+TGG + chr1_2:3274471-3274490 Msa0049770:CDS 45.0%
GATTGCACACACACTAAAGG+TGG + chr1_2:3274534-3274553 Msa0049770:CDS 45.0%
ACATATATACATCCCCCCCT+TGG - chr1_2:3274775-3274794 None:intergenic 45.0%
!! TTTCAAAAAAAAAAAAAAAT+AGG + chr1_2:3274720-3274739 Msa0049770:three_prime_UTR 5.0%
!! TTCAAAAAAAAAAAAAAATA+GGG + chr1_2:3274721-3274740 Msa0049770:three_prime_UTR 5.0%
!! TTTCAAAAAAAAAAAAAAAT+AGG + chr1_2:3274720-3274739 Msa0049770:three_prime_UTR 5.0%
!! TTCAAAAAAAAAAAAAAATA+GGG + chr1_2:3274721-3274740 Msa0049770:three_prime_UTR 5.0%
!!! GTTGGCGATTTTCGGGTTTG+CGG + chr1_2:3273565-3273584 Msa0049770:intron 50.0%
TAACTTGGCGTCATGATCCC+CGG - chr1_2:3274075-3274094 None:intergenic 50.0%
CCGCCAAGAGATTTGGAAGA+AGG + chr1_2:3274316-3274335 Msa0049770:CDS 50.0%
! TTACCATGCCGGCGATTTTG+TGG + chr1_2:3274461-3274480 Msa0049770:CDS 50.0%
!!! GTTGGCGATTTTCGGGTTTG+CGG + chr1_2:3273565-3273584 Msa0049770:intron 50.0%
TAACTTGGCGTCATGATCCC+CGG - chr1_2:3274075-3274094 None:intergenic 50.0%
CCGCCAAGAGATTTGGAAGA+AGG + chr1_2:3274316-3274335 Msa0049770:CDS 50.0%
! TTACCATGCCGGCGATTTTG+TGG + chr1_2:3274461-3274480 Msa0049770:CDS 50.0%
TCCGAAAGCGAACGTGACAG+CGG - chr1_2:3272737-3272756 None:intergenic 55.0%
TGTCGCAACTGGGATCGCAA+TGG - chr1_2:3274045-3274064 None:intergenic 55.0%
CGGTACTAGCTGTCGCAACT+GGG - chr1_2:3274055-3274074 None:intergenic 55.0%
CCAGTTGCGACAGCTAGTAC+CGG + chr1_2:3274053-3274072 Msa0049770:intron 55.0%
CAGTTGCGACAGCTAGTACC+GGG + chr1_2:3274054-3274073 Msa0049770:intron 55.0%
AGTTGCGACAGCTAGTACCG+GGG + chr1_2:3274055-3274074 Msa0049770:intron 55.0%
GGGAAACCCGCCAAGAGATT+TGG + chr1_2:3274309-3274328 Msa0049770:CDS 55.0%
CAACCACAAAATCGCCGGCA+TGG - chr1_2:3274467-3274486 None:intergenic 55.0%
ACGTGACAGCGGGATATGAC+CGG - chr1_2:3272726-3272745 None:intergenic 55.0%
TCCGAAAGCGAACGTGACAG+CGG - chr1_2:3272737-3272756 None:intergenic 55.0%
TGTCGCAACTGGGATCGCAA+TGG - chr1_2:3274045-3274064 None:intergenic 55.0%
CGGTACTAGCTGTCGCAACT+GGG - chr1_2:3274055-3274074 None:intergenic 55.0%
CCAGTTGCGACAGCTAGTAC+CGG + chr1_2:3274053-3274072 Msa0049770:intron 55.0%
CAGTTGCGACAGCTAGTACC+GGG + chr1_2:3274054-3274073 Msa0049770:intron 55.0%
AGTTGCGACAGCTAGTACCG+GGG + chr1_2:3274055-3274074 Msa0049770:intron 55.0%
GGGAAACCCGCCAAGAGATT+TGG + chr1_2:3274309-3274328 Msa0049770:CDS 55.0%
CAACCACAAAATCGCCGGCA+TGG - chr1_2:3274467-3274486 None:intergenic 55.0%
CCGAAAGCGAACGTGACAGC+GGG - chr1_2:3272736-3272755 None:intergenic 60.0%
CCCGCTGTCACGTTCGCTTT+CGG + chr1_2:3272733-3272752 Msa0049770:five_prime_UTR 60.0%
GCTGTCACGTTCGCTTTCGG+AGG + chr1_2:3272736-3272755 Msa0049770:five_prime_UTR 60.0%
CCGGTACTAGCTGTCGCAAC+TGG - chr1_2:3274056-3274075 None:intergenic 60.0%
CCGAAAGCGAACGTGACAGC+GGG - chr1_2:3272736-3272755 None:intergenic 60.0%
CCCGCTGTCACGTTCGCTTT+CGG + chr1_2:3272733-3272752 Msa0049770:five_prime_UTR 60.0%
GCTGTCACGTTCGCTTTCGG+AGG + chr1_2:3272736-3272755 Msa0049770:five_prime_UTR 60.0%
CCGGTACTAGCTGTCGCAAC+TGG - chr1_2:3274056-3274075 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 3272726 3274881 3272726 ID=Msa0049770;Name=Msa0049770
chr1_2 mRNA 3272726 3274881 3272726 ID=Msa0049770-mRNA-1;Parent=Msa0049770;Name=Msa0049770-mRNA-1;_AED=0.20;_eAED=0.20;_QI=192|1|1|1|1|1|3|252|286
chr1_2 exon 3272726 3273229 3272726 ID=Msa0049770-mRNA-1:exon:769;Parent=Msa0049770-mRNA-1
chr1_2 exon 3273308 3273426 3273308 ID=Msa0049770-mRNA-1:exon:770;Parent=Msa0049770-mRNA-1
chr1_2 exon 3274200 3274881 3274200 ID=Msa0049770-mRNA-1:exon:771;Parent=Msa0049770-mRNA-1
chr1_2 five_prime_UTR 3272726 3272917 3272726 ID=Msa0049770-mRNA-1:five_prime_utr;Parent=Msa0049770-mRNA-1
chr1_2 CDS 3272918 3273229 3272918 ID=Msa0049770-mRNA-1:cds;Parent=Msa0049770-mRNA-1
chr1_2 CDS 3273308 3273426 3273308 ID=Msa0049770-mRNA-1:cds;Parent=Msa0049770-mRNA-1
chr1_2 CDS 3274200 3274629 3274200 ID=Msa0049770-mRNA-1:cds;Parent=Msa0049770-mRNA-1
chr1_2 three_prime_UTR 3274630 3274881 3274630 ID=Msa0049770-mRNA-1:three_prime_utr;Parent=Msa0049770-mRNA-1
Gene Sequence

>Msa0049770

ATGGGTATCTTGTTCTCAGTTTCATCCCAATCATCATCATCACCAAAACCAAGTTTAGGAGAATTACCAGAAAGCTGTGTAGCTGTTATAATGGAATACTTGGATCCTCCTCAGATTTGCAAATTAGCTTCTCTCAACCGTGCTTTTCATGGTGCTTCTTTGGCTGATTTTGTTTGGGAATCCAAACTTCCCTCTAATTATGATGTTATAATTCAAAAAATCTTTGATGGTTCTTCTTTTCCTTCTCATTTGGGGAAAAGAGGGATTTATTCAAGACTTTGTAGCTTCAATACTTTCGATGAAGGAACCAAGAAAGTTTGGTTGGATAGAAGCATGGGTAAAGTGTGTTTGTCTATATCGGCTAAAGGGTTGTCAATAACTGGGATTGATGATCGAAGATATTGGAACCATATTCCCACTGAAGAATCAAGATTCAATAATGTTGCGTATCTCCAACAAATCTGGTGGTTTGAAGTGGACGGTGAAATTGAGTTCCCATTTCCAGCAGGAACATATAGCTTATTCTTCCGAATACATTTAGGGAAACCCGCCAAGAGATTTGGAAGAAGGGTTTGCAACACAGAACATGTTCATGGTTGGGATGTAAAGCCTGTTAGATTCCAACTATGGACTTCAGATGATCAATATGATTCATCGCAATGTTTTTTGAAAGGTCCAGGTAAATGGCGCTATTACCATGCCGGCGATTTTGTGGTTGAAGATGGTAATGTATCAACAAAAGTAAAATTCTCTCTGACTCAAATTGATTGCACACACACTAAAGGTGGTCTCTGTTTAGATTCTGTGTTTGTGTATCCTAGTGAGTTTAGAAAGGTTAAAGAATTTTTGAACTACTCTTAA

Protein sequence

>Msa0049770

MGILFSVSSQSSSSPKPSLGELPESCVAVIMEYLDPPQICKLASLNRAFHGASLADFVWESKLPSNYDVIIQKIFDGSSFPSHLGKRGIYSRLCSFNTFDEGTKKVWLDRSMGKVCLSISAKGLSITGIDDRRYWNHIPTEESRFNNVAYLQQIWWFEVDGEIEFPFPAGTYSLFFRIHLGKPAKRFGRRVCNTEHVHGWDVKPVRFQLWTSDDQYDSSQCFLKGPGKWRYYHAGDFVVEDGNVSTKVKFSLTQIDCTHTKGGLCLDSVFVYPSEFRKVKEFLNYS*