Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023200 | Msa0262510 | 0.801999 | 6.907449e-49 | -8.615850e-47 |
| Msa0023200 | Msa0326520 | 0.801031 | 1.090877e-48 | -8.615850e-47 |
| Msa0023200 | Msa0484780 | 0.816990 | 4.158409e-52 | -8.615850e-47 |
| Msa0023200 | Msa0572420 | 0.817923 | 2.562758e-52 | -8.615850e-47 |
| Msa0023200 | Msa0676760 | 0.831000 | 2.138563e-55 | -8.615850e-47 |
| Msa0023200 | Msa0693380 | 0.812716 | 3.686616e-51 | -8.615850e-47 |
| Msa0023200 | Msa1082500 | 0.811815 | 5.796159e-51 | -8.615850e-47 |
| Msa0023200 | Msa1297290 | 0.807903 | 4.026361e-50 | -8.615850e-47 |
| Msa0023200 | Msa1372150 | 0.801086 | 1.062750e-48 | -8.615850e-47 |
| Msa0023200 | Msa1385000 | 0.809705 | 1.657983e-50 | -8.615850e-47 |
| Msa0023200 | Msa1410210 | 0.802813 | 4.695738e-49 | -8.615850e-47 |
| Msa0023200 | Msa1440940 | 0.808632 | 2.815404e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 111 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCCCCTTCGATGTCTTTC+TGG | 0.162695 | 1_1:+44153090 | None:intergenic |
| ATGCTGCAATTCTTTGAAAT+TGG | 0.221286 | 1_1:-44152662 | Msa0023200:three_prime_UTR |
| CGGTTTCCTGCTTGGGGATT+AGG | 0.225359 | 1_1:-44157100 | Msa0023200:five_prime_UTR |
| GTTAATTTCGAAATCGAAAT+TGG | 0.238154 | 1_1:+44152743 | None:intergenic |
| TTCGATGTCTTTCTGGAGAT+TGG | 0.248895 | 1_1:+44153097 | None:intergenic |
| CGATATTGTTGAATCCATTA+TGG | 0.253676 | 1_1:-44154640 | Msa0023200:three_prime_UTR |
| CCAATTCTTTGAACTAAATC+TGG | 0.266253 | 1_1:+44154156 | None:intergenic |
| ACAAACAAAAGGCAAGTTAT+AGG | 0.274602 | 1_1:-44152722 | Msa0023200:three_prime_UTR |
| ACAATTTATGTAGGCTATAA+TGG | 0.278642 | 1_1:-44157161 | Msa0023200:five_prime_UTR |
| TGATAAGCGGTTTCCTGCTT+GGG | 0.290897 | 1_1:-44157107 | Msa0023200:five_prime_UTR |
| CCAGATTTAGTTCAAAGAAT+TGG | 0.297287 | 1_1:-44154156 | Msa0023200:three_prime_UTR |
| TTTGCATTACATCGATTTAT+CGG | 0.309316 | 1_1:-44157381 | Msa0023200:five_prime_UTR |
| GGTGATTCTGTTTCTGTTGT+TGG | 0.311273 | 1_1:-44155790 | Msa0023200:three_prime_UTR |
| TTCTCTTCAGATGTCTTTGT+CGG | 0.328998 | 1_1:+44155422 | None:intergenic |
| CGCAAAGCATCTTCCCCATC+TGG | 0.329070 | 1_1:+44153182 | None:intergenic |
| TTGCAACTATTTAGTACTTC+AGG | 0.329691 | 1_1:-44152785 | Msa0023200:three_prime_UTR |
| TTGGATTATGGTCTAGCTTT+GGG | 0.331396 | 1_1:-44152632 | Msa0023200:three_prime_UTR |
| GAAAATGATGGTTACTGGTT+AGG | 0.331577 | 1_1:+44152862 | None:intergenic |
| AATTGCTTCGATACTTTAGA+AGG | 0.335465 | 1_1:+44155626 | None:intergenic |
| GAGAATGGCTTCTCCGTAGA+AGG | 0.342848 | 1_1:+44156131 | None:intergenic |
| CGGATAAACCAATTTCGATT+TGG | 0.347517 | 1_1:-44152698 | Msa0023200:three_prime_UTR |
| TGAAGCCGAGGATGGAATTC+TGG | 0.356278 | 1_1:-44156583 | Msa0023200:exon |
| CTGTTTGACCTTGGGAAGAC+TGG | 0.366747 | 1_1:-44155292 | Msa0023200:three_prime_UTR |
| GCCTACCTCCCAGCCACAAA+TGG | 0.372066 | 1_1:+44153066 | None:intergenic |
| ACCAATGGAAGTTATATTGA+TGG | 0.374243 | 1_1:+44153038 | None:intergenic |
| ATTGGATTATGGTCTAGCTT+TGG | 0.374450 | 1_1:-44152633 | Msa0023200:three_prime_UTR |
| CATTATGTTTCACAAGTTGA+TGG | 0.378415 | 1_1:+44157293 | None:intergenic |
| TAAATTGTAGGGTGTTCATT+AGG | 0.379165 | 1_1:+44157176 | None:intergenic |
| CTGATAAGCGGTTTCCTGCT+TGG | 0.381905 | 1_1:-44157108 | Msa0023200:five_prime_UTR |
| AATTCGCTAGATGTTATGTT+TGG | 0.393802 | 1_1:-44156166 | Msa0023200:intron |
| CAAACAAAAGGCAAGTTATA+GGG | 0.396615 | 1_1:-44152721 | Msa0023200:three_prime_UTR |
| ATACATGCATGGCTTTAGAT+TGG | 0.397711 | 1_1:+44156042 | None:intergenic |
| TGTTGAATCCATTATGGAAA+AGG | 0.404316 | 1_1:-44154634 | Msa0023200:intron |
| AGGAGATGGGAAGATTGATA+TGG | 0.412059 | 1_1:-44154484 | Msa0023200:three_prime_UTR |
| AAAGAAACCTACTTTAGATA+TGG | 0.414269 | 1_1:+44154405 | None:intergenic |
| CATTTAAACTGTTTGACCTT+GGG | 0.422487 | 1_1:-44155300 | Msa0023200:three_prime_UTR |
| TCGATGTAATGCAAAGAATC+TGG | 0.423247 | 1_1:+44157389 | None:intergenic |
| AGGGGCTACCCATTTGTGGC+TGG | 0.428528 | 1_1:-44153075 | Msa0023200:three_prime_UTR |
| CTTTGATAAAGATGTATGTA+AGG | 0.443083 | 1_1:+44152816 | None:intergenic |
| TCGGTTAAATTCATATCAAA+AGG | 0.463052 | 1_1:-44157357 | Msa0023200:five_prime_UTR |
| GGGGCTACCCATTTGTGGCT+GGG | 0.465111 | 1_1:-44153074 | Msa0023200:three_prime_UTR |
| TTTCGAAATTAACAAACAAA+AGG | 0.468270 | 1_1:-44152733 | Msa0023200:three_prime_UTR |
| TTATAGCCTACATAAATTGT+AGG | 0.470472 | 1_1:+44157164 | None:intergenic |
| GCATTTAAACTGTTTGACCT+TGG | 0.472507 | 1_1:-44155301 | Msa0023200:three_prime_UTR |
| GAAAGGTTTCCTCCCTTCTA+CGG | 0.477633 | 1_1:-44156144 | Msa0023200:CDS |
| ATGAAGGAGGTTGACTCAAA+AGG | 0.481217 | 1_1:-44154504 | Msa0023200:three_prime_UTR |
| AAGTTGATGGTTAAAGAAGT+TGG | 0.483602 | 1_1:+44157306 | None:intergenic |
| CCCATTTGTGGCTGGGAGGT+AGG | 0.489137 | 1_1:-44153067 | Msa0023200:three_prime_UTR |
| GCCATCAATATAACTTCCAT+TGG | 0.495554 | 1_1:-44153039 | Msa0023200:three_prime_UTR |
| GAAGTTGAAGGAGATGGTCT+TGG | 0.495842 | 1_1:-44154697 | Msa0023200:intron |
| TCGAAGGGGCTACCCATTTG+TGG | 0.504696 | 1_1:-44153079 | Msa0023200:three_prime_UTR |
| GTAAGCTTGATATTTGTCAA+TGG | 0.511327 | 1_1:-44157335 | Msa0023200:five_prime_UTR |
| GCAGTTGTGACGGAGGAGAA+TGG | 0.511743 | 1_1:+44156116 | None:intergenic |
| CCTACCTCCCAGCCACAAAT+GGG | 0.519639 | 1_1:+44153067 | None:intergenic |
| GTCATGATCTTAAGAAGAGA+AGG | 0.521718 | 1_1:+44154432 | None:intergenic |
| TCACTTGAACTTAGAGCAAG+TGG | 0.523247 | 1_1:-44154123 | Msa0023200:three_prime_UTR |
| GAGGTTGACTCAAAAGGAGA+TGG | 0.527295 | 1_1:-44154498 | Msa0023200:three_prime_UTR |
| ATGTAGGCTATAATGGAGGT+TGG | 0.527385 | 1_1:-44157154 | Msa0023200:five_prime_UTR |
| TATAGCCTACATAAATTGTA+GGG | 0.531966 | 1_1:+44157165 | None:intergenic |
| ATCTCCAGAAAGACATCGAA+GGG | 0.537775 | 1_1:-44153094 | Msa0023200:three_prime_UTR |
| GTGGAGCTACCTTAGCTGAC+TGG | 0.543076 | 1_1:-44156611 | Msa0023200:five_prime_UTR |
| GCAAAGCATCTTCCCCATCT+GGG | 0.544445 | 1_1:+44153183 | None:intergenic |
| GCTAGATGTTATGTTTGGAA+AGG | 0.544800 | 1_1:-44156161 | Msa0023200:intron |
| CTATACTTGTGCTCCTTGTG+TGG | 0.549669 | 1_1:-44154094 | Msa0023200:three_prime_UTR |
| TGGCGGCTTGAAGCCGAGGA+TGG | 0.549996 | 1_1:-44156591 | Msa0023200:exon |
| TACCTCCAGAATTCCATCCT+CGG | 0.552109 | 1_1:+44156578 | None:intergenic |
| TTTCCTGCTTGGGGATTAGG+AGG | 0.553233 | 1_1:-44157097 | Msa0023200:five_prime_UTR |
| TTTCCTCCTAATCCCCAAGC+AGG | 0.556636 | 1_1:+44157094 | None:intergenic |
| GAACACCCTACAATTTATGT+AGG | 0.559586 | 1_1:-44157170 | Msa0023200:five_prime_UTR |
| GATAAGCGGTTTCCTGCTTG+GGG | 0.560782 | 1_1:-44157106 | Msa0023200:five_prime_UTR |
| TTCAAGCCGCCAGTCAGCTA+AGG | 0.565572 | 1_1:+44156602 | None:intergenic |
| ACAATGAGATACGATACCTC+AGG | 0.570406 | 1_1:+44157066 | None:intergenic |
| TTACTGGTTAGGAATCCCTA+TGG | 0.572232 | 1_1:+44152873 | None:intergenic |
| TCTTTAGTTTCAGACTTGCA+AGG | 0.573368 | 1_1:-44153120 | Msa0023200:three_prime_UTR |
| AGGTCTGCAAAGATCCCAGA+TGG | 0.575622 | 1_1:-44153197 | Msa0023200:three_prime_UTR |
| GGAAGATTGATATGGAAGAG+TGG | 0.580086 | 1_1:-44154476 | Msa0023200:three_prime_UTR |
| TGACTGGCGGCTTGAAGCCG+AGG | 0.580848 | 1_1:-44156595 | Msa0023200:five_prime_UTR |
| GCTACCCATTTGTGGCTGGG+AGG | 0.583997 | 1_1:-44153071 | Msa0023200:three_prime_UTR |
| CATACTGAAGTTGAAGGAGA+TGG | 0.587037 | 1_1:-44154703 | Msa0023200:intron |
| ATAAGTGTTTCCCTCCGACC+AGG | 0.598013 | 1_1:-44156021 | Msa0023200:intron |
| TTTATAATGTGATAAACTGA+TGG | 0.598835 | 1_1:-44152966 | Msa0023200:three_prime_UTR |
| AGTTCTATGATTCTGATAAG+CGG | 0.602034 | 1_1:-44157120 | Msa0023200:five_prime_UTR |
| AATCTCCAGAAAGACATCGA+AGG | 0.609993 | 1_1:-44153095 | Msa0023200:three_prime_UTR |
| AAGAATGATACCTGGTCGGA+GGG | 0.614079 | 1_1:+44156011 | None:intergenic |
| AGAATGGCTTCTCCGTAGAA+GGG | 0.618207 | 1_1:+44156132 | None:intergenic |
| GAAGAATGATACCTGGTCGG+AGG | 0.619039 | 1_1:+44156010 | None:intergenic |
| AGGTTGACTCAAAAGGAGAT+GGG | 0.621613 | 1_1:-44154497 | Msa0023200:three_prime_UTR |
| ATTACATCGATTTATCGGAT+CGG | 0.624271 | 1_1:-44157376 | Msa0023200:five_prime_UTR |
| GGGAAACACTTATACATGCA+TGG | 0.624315 | 1_1:+44156031 | None:intergenic |
| CAATGTATCCAGTCTTCCCA+AGG | 0.625085 | 1_1:+44155284 | None:intergenic |
| TGCTAATACTCAAATGACGC+GGG | 0.629072 | 1_1:-44155566 | Msa0023200:intron |
| TGTAATGCAAAGAATCTGGC+TGG | 0.630796 | 1_1:+44157393 | None:intergenic |
| TTTCGCCGCAGTTGTGACGG+AGG | 0.632986 | 1_1:+44156109 | None:intergenic |
| GGTCTGCAAAGATCCCAGAT+GGG | 0.639985 | 1_1:-44153196 | Msa0023200:three_prime_UTR |
| CAATGAGATACGATACCTCA+GGG | 0.640498 | 1_1:+44157067 | None:intergenic |
| GAAGAAGAATGATACCTGGT+CGG | 0.649143 | 1_1:+44156007 | None:intergenic |
| GAGGAAGAGTAAGAGAGAGA+CGG | 0.654664 | 1_1:-44156071 | Msa0023200:exon |
| GTCTGCAAAGATCCCAGATG+GGG | 0.656027 | 1_1:-44153195 | Msa0023200:three_prime_UTR |
| TTGCTAATACTCAAATGACG+CGG | 0.657610 | 1_1:-44155567 | Msa0023200:three_prime_UTR |
| TGATGCCTTACAACCACACA+AGG | 0.662898 | 1_1:+44154081 | None:intergenic |
| ATGGCTTCTCCGTAGAAGGG+AGG | 0.666456 | 1_1:+44156135 | None:intergenic |
| TCTCTCTTACTCTTCCTCAC+CGG | 0.671004 | 1_1:+44156076 | None:intergenic |
| AGCCGAGGATGGAATTCTGG+AGG | 0.674133 | 1_1:-44156580 | Msa0023200:intron |
| ATTTATGTAGGCTATAATGG+AGG | 0.678956 | 1_1:-44157158 | Msa0023200:five_prime_UTR |
| ACAAAAGGCAAGTTATAGGG+CGG | 0.687181 | 1_1:-44152718 | Msa0023200:three_prime_UTR |
| ATTCTCCTCCGTCACAACTG+CGG | 0.694233 | 1_1:-44156114 | Msa0023200:CDS |
| TGGATACATTGAGCATAGCG+AGG | 0.706882 | 1_1:-44155272 | Msa0023200:intron |
| GAGCTACCTTAGCTGACTGG+CGG | 0.714439 | 1_1:-44156608 | Msa0023200:five_prime_UTR |
| TGGGAGTCTAACTAGCTCTG+AGG | 0.725481 | 1_1:-44157032 | Msa0023200:intron |
| TCTCCAGAAAGACATCGAAG+GGG | 0.749166 | 1_1:-44153093 | Msa0023200:three_prime_UTR |
| TTAGGAGGAAAGATACCCTG+AGG | 0.761215 | 1_1:-44157082 | Msa0023200:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTAATATTATCTTAAATTT+TGG | + | chr1_1:44156182-44156201 | None:intergenic | 10.0% |
| !! | AAAAGAAGTTAAAAAATTGT+AGG | + | chr1_1:44152793-44152812 | None:intergenic | 15.0% |
| !!! | CAATTTTTTAACTTCTTTTT+TGG | - | chr1_1:44152794-44152813 | Msa0023200:three_prime_UTR | 15.0% |
| !! | AGGAAAATAATAATTAACAA+TGG | + | chr1_1:44153096-44153115 | None:intergenic | 15.0% |
| !! | AAATTGAGTTTATTAAAAGA+AGG | + | chr1_1:44153116-44153135 | None:intergenic | 15.0% |
| !! | TAACTTATCGTATTAATATT+AGG | + | chr1_1:44153330-44153349 | None:intergenic | 15.0% |
| !! | TTCATATAGTAATTGAAAAA+TGG | - | chr1_1:44154167-44154186 | Msa0023200:intron | 15.0% |
| !! | TCATATAGTAATTGAAAAAT+GGG | - | chr1_1:44154168-44154187 | Msa0023200:intron | 15.0% |
| !!! | TATTATCTTAAATTTTGGTT+TGG | + | chr1_1:44156177-44156196 | None:intergenic | 15.0% |
| !! | TAAAGTTGTAATTAACTTTA+GGG | + | chr1_1:44156637-44156656 | None:intergenic | 15.0% |
| !! | TTAAAGTTGTAATTAACTTT+AGG | + | chr1_1:44156638-44156657 | None:intergenic | 15.0% |
| !!! | ACATTAAATTTTATAACCAA+TGG | + | chr1_1:44157009-44157028 | None:intergenic | 15.0% |
| !! | GATAATCCAAAAAAAAATAT+TGG | - | chr1_1:44157114-44157133 | Msa0023200:five_prime_UTR | 15.0% |
| !!! | TTTAAAATTTGTACCATAGT+TGG | - | chr1_1:44153179-44153198 | Msa0023200:three_prime_UTR | 20.0% |
| !!! | ATTTCATCATTCTTCTTTTT+TGG | - | chr1_1:44153392-44153411 | Msa0023200:intron | 20.0% |
| !!! | TTTGTTTTGTATTTTTTTCC+TGG | - | chr1_1:44153507-44153526 | Msa0023200:intron | 20.0% |
| !!! | TTGTTTTGTATTTTTTTCCT+GGG | - | chr1_1:44153508-44153527 | Msa0023200:intron | 20.0% |
| !!! | TTTGTGCTTTCATTTTTATA+TGG | - | chr1_1:44153688-44153707 | Msa0023200:intron | 20.0% |
| !!! | TTCATTTTTATATGGTTTCT+TGG | - | chr1_1:44153696-44153715 | Msa0023200:intron | 20.0% |
| !! | AAGATAAAATCACTTAAATG+AGG | + | chr1_1:44153827-44153846 | None:intergenic | 20.0% |
| !!! | TCATTTAAGTGATTTTATCT+TGG | - | chr1_1:44153826-44153845 | Msa0023200:intron | 20.0% |
| !!! | TTCAAAATTTTACCTCTTTT+CGG | + | chr1_1:44154218-44154237 | None:intergenic | 20.0% |
| !!! | AAAAGAGGTAAAATTTTGAA+GGG | - | chr1_1:44154218-44154237 | Msa0023200:intron | 20.0% |
| !! | AGAGAAGAAAATTAAATGTT+TGG | - | chr1_1:44154624-44154643 | Msa0023200:intron | 20.0% |
| !! | AACTGTAAGAACAAAAAATA+TGG | + | chr1_1:44154708-44154727 | None:intergenic | 20.0% |
| !! | GATAAAGATTGACATAATTA+TGG | - | chr1_1:44155077-44155096 | Msa0023200:intron | 20.0% |
| !!! | ATTTTGATGTCACTTTTTAT+AGG | + | chr1_1:44155151-44155170 | None:intergenic | 20.0% |
| !!! | TCTAAATGGTCTTATATTTA+AGG | - | chr1_1:44155172-44155191 | Msa0023200:intron | 20.0% |
| !!! | CTCACTTATAAACATTTTTT+AGG | + | chr1_1:44156108-44156127 | None:intergenic | 20.0% |
| !! | ATTCTCTATAAATAGAAGAA+CGG | + | chr1_1:44156527-44156546 | None:intergenic | 20.0% |
| !! | TTACAACTTACATATATGAA+TGG | - | chr1_1:44156807-44156826 | Msa0023200:intron | 20.0% |
| !! | TTTATAATGTGATAAACTGA+TGG | - | chr1_1:44157063-44157082 | Msa0023200:five_prime_UTR | 20.0% |
| !!! | TGTGTACCAATATTTTTTTT+TGG | + | chr1_1:44157123-44157142 | None:intergenic | 20.0% |
| !!! | GTATTGATTTTTGAAAATGA+TGG | + | chr1_1:44157182-44157201 | None:intergenic | 20.0% |
| !! | TTTCGAAATTAACAAACAAA+AGG | - | chr1_1:44157296-44157315 | Msa0023200:five_prime_UTR | 20.0% |
| !!! | TTTGCATTACATCGATTTAT+CGG | - | chr1_1:44152648-44152667 | Msa0023200:three_prime_UTR | 25.0% |
| ! | TCGGTTAAATTCATATCAAA+AGG | - | chr1_1:44152672-44152691 | Msa0023200:three_prime_UTR | 25.0% |
| !!! | TTTTTTGGTTCTAAGTAACT+TGG | - | chr1_1:44152809-44152828 | Msa0023200:three_prime_UTR | 25.0% |
| ! | TATAGCCTACATAAATTGTA+GGG | + | chr1_1:44152867-44152886 | None:intergenic | 25.0% |
| ! | TTATAGCCTACATAAATTGT+AGG | + | chr1_1:44152868-44152887 | None:intergenic | 25.0% |
| ! | ACAATTTATGTAGGCTATAA+TGG | - | chr1_1:44152868-44152887 | Msa0023200:three_prime_UTR | 25.0% |
| !!! | TCTCATTGTTTTAATCTGAA+TGG | - | chr1_1:44152977-44152996 | Msa0023200:three_prime_UTR | 25.0% |
| !!! | CTCATTGTTTTAATCTGAAT+GGG | - | chr1_1:44152978-44152997 | Msa0023200:three_prime_UTR | 25.0% |
| !!! | ACTCTGTTTTTTTAGTACAA+TGG | - | chr1_1:44153026-44153045 | Msa0023200:three_prime_UTR | 25.0% |
| !!! | ATCATTAGAGTTGATAAATG+AGG | + | chr1_1:44153141-44153160 | None:intergenic | 25.0% |
| ! | AAATTGTCAATGAGAAAACA+TGG | + | chr1_1:44153296-44153315 | None:intergenic | 25.0% |
| !! | TGTTTTCTCATTGACAATTT+TGG | - | chr1_1:44153296-44153315 | Msa0023200:intron | 25.0% |
| !!! | ATGATTTGGATACTTTTGAA+GGG | - | chr1_1:44153642-44153661 | Msa0023200:intron | 25.0% |
| ! | TTAATTAGGGTTATGGAAAT+GGG | + | chr1_1:44154066-44154085 | None:intergenic | 25.0% |
| ! | TAATCACTTAATTAGGGTTA+TGG | + | chr1_1:44154073-44154092 | None:intergenic | 25.0% |
| ! | GCTATGTAATCACTTAATTA+GGG | + | chr1_1:44154079-44154098 | None:intergenic | 25.0% |
| ! | AGCTATGTAATCACTTAATT+AGG | + | chr1_1:44154080-44154099 | None:intergenic | 25.0% |
| !! | ATAGACTAACCTTTCAATTT+TGG | + | chr1_1:44154122-44154141 | None:intergenic | 25.0% |
| ! | TAGTCTATATGCACAAATTT+AGG | - | chr1_1:44154134-44154153 | Msa0023200:three_prime_UTR | 25.0% |
| !! | GAAAAGAGGTAAAATTTTGA+AGG | - | chr1_1:44154217-44154236 | Msa0023200:intron | 25.0% |
| !! | TACATTGATTGCAGATAAAA+AGG | + | chr1_1:44154317-44154336 | None:intergenic | 25.0% |
| !! | TTTTTATCTGCAATCAATGT+AGG | - | chr1_1:44154316-44154335 | Msa0023200:intron | 25.0% |
| !!! | GGAATAGTTTTTGTTTACTT+TGG | - | chr1_1:44154337-44154356 | Msa0023200:intron | 25.0% |
| !! | GAAGCAATTTTCAAAAACTT+CGG | - | chr1_1:44154417-44154436 | Msa0023200:three_prime_UTR | 25.0% |
| ! | ATGAACAATAGAAAGGTTAA+AGG | + | chr1_1:44154790-44154809 | None:intergenic | 25.0% |
| ! | GAAAATGATGAACAATAGAA+AGG | + | chr1_1:44154797-44154816 | None:intergenic | 25.0% |
| ! | ACTTTAGTAGTTATAGACTA+CGG | - | chr1_1:44155240-44155259 | Msa0023200:intron | 25.0% |
| !!! | TGAACCTTTTTTGTACATAA+TGG | - | chr1_1:44155303-44155322 | Msa0023200:three_prime_UTR | 25.0% |
| ! | TATGCCATTATGTACAAAAA+AGG | + | chr1_1:44155310-44155329 | None:intergenic | 25.0% |
| ! | GATAAATGTATGGTTTCATA+TGG | + | chr1_1:44155428-44155447 | None:intergenic | 25.0% |
| ! | TTTCTCTTATACTTCTTTCT+TGG | - | chr1_1:44155484-44155503 | Msa0023200:intron | 25.0% |
| ! | AAAGAAACCTACTTTAGATA+TGG | + | chr1_1:44155627-44155646 | None:intergenic | 25.0% |
| ! | ATATGCTTGACAAGTAAATT+TGG | - | chr1_1:44155775-44155794 | Msa0023200:three_prime_UTR | 25.0% |
| ! | AAACTTTGATTCTACATTTG+TGG | - | chr1_1:44155835-44155854 | Msa0023200:intron | 25.0% |
| ! | AGCATAATAAATTCAGAAGT+TGG | + | chr1_1:44155977-44155996 | None:intergenic | 25.0% |
| ! | CTAGGTATATAAATAACACT+AGG | - | chr1_1:44156256-44156275 | Msa0023200:intron | 25.0% |
| !!! | CTTTAAAGCTTAAAATTTCC+TGG | - | chr1_1:44156344-44156363 | Msa0023200:intron | 25.0% |
| !!! | GTTATGTTATGTGTTTTGTT+AGG | - | chr1_1:44156370-44156389 | Msa0023200:intron | 25.0% |
| ! | TTCTCTATAAATAGAAGAAC+GGG | + | chr1_1:44156526-44156545 | None:intergenic | 25.0% |
| ! | CAAAAAACACAAAGTGATAA+CGG | - | chr1_1:44156595-44156614 | Msa0023200:five_prime_UTR | 25.0% |
| ! | CAAGGTTTATATTAGAAAGA+AGG | + | chr1_1:44156680-44156699 | None:intergenic | 25.0% |
| !! | TTTTGCTAAGTAGAGAATTT+AGG | + | chr1_1:44156765-44156784 | None:intergenic | 25.0% |
| !!! | TTTTTGAAAATGATGGTTAC+TGG | + | chr1_1:44157175-44157194 | None:intergenic | 25.0% |
| ! | CTTTGATAAAGATGTATGTA+AGG | + | chr1_1:44157216-44157235 | None:intergenic | 25.0% |
| ! | GTTAATTTCGAAATCGAAAT+TGG | + | chr1_1:44157289-44157308 | None:intergenic | 25.0% |
| !! | TTTTATGACCAAATCGAAAT+TGG | + | chr1_1:44157342-44157361 | None:intergenic | 25.0% |
| !!! | CTTTGAAATTGGTTTTGAAT+TGG | - | chr1_1:44157378-44157397 | Msa0023200:five_prime_UTR | 25.0% |
| !!! | ATTGGTTTTGAATTGGATTA+TGG | - | chr1_1:44157385-44157404 | Msa0023200:five_prime_UTR | 25.0% |
| !! | ATTACATCGATTTATCGGAT+CGG | - | chr1_1:44152653-44152672 | Msa0023200:three_prime_UTR | 30.0% |
| GTAAGCTTGATATTTGTCAA+TGG | - | chr1_1:44152694-44152713 | Msa0023200:three_prime_UTR | 30.0% | |
| !! | AAGTTGATGGTTAAAGAAGT+TGG | + | chr1_1:44152726-44152745 | None:intergenic | 30.0% |
| ! | CATTATGTTTCACAAGTTGA+TGG | + | chr1_1:44152739-44152758 | None:intergenic | 30.0% |
| AAAAATTGTAGGATCACAGT+GGG | + | chr1_1:44152782-44152801 | None:intergenic | 30.0% | |
| AAAAAATTGTAGGATCACAG+TGG | + | chr1_1:44152783-44152802 | None:intergenic | 30.0% | |
| ! | TAAATTGTAGGGTGTTCATT+AGG | + | chr1_1:44152856-44152875 | None:intergenic | 30.0% |
| ATTTATGTAGGCTATAATGG+AGG | - | chr1_1:44152871-44152890 | Msa0023200:three_prime_UTR | 30.0% | |
| AGTTCTATGATTCTGATAAG+CGG | - | chr1_1:44152909-44152928 | Msa0023200:three_prime_UTR | 30.0% | |
| AATTTGTACCATAGTTGGAT+TGG | - | chr1_1:44153184-44153203 | Msa0023200:three_prime_UTR | 30.0% | |
| TTTCTGCAGCATTACAAAAA+TGG | + | chr1_1:44153360-44153379 | None:intergenic | 30.0% | |
| TAATGCTGCAGAAAAAAGAA+AGG | - | chr1_1:44153366-44153385 | Msa0023200:intron | 30.0% | |
| GCAAAAACAAAATGCACATA+TGG | + | chr1_1:44153619-44153638 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTTGCTGCATGATT+TGG | - | chr1_1:44153628-44153647 | Msa0023200:intron | 30.0% |
| !! | CATGATTTGGATACTTTTGA+AGG | - | chr1_1:44153641-44153660 | Msa0023200:intron | 30.0% |
| !! | TGATTTGGATACTTTTGAAG+GGG | - | chr1_1:44153643-44153662 | Msa0023200:intron | 30.0% |
| ! | CTAAAGATTTTTCATTCGAG+TGG | - | chr1_1:44153795-44153814 | Msa0023200:intron | 30.0% |
| AATTCGCTAGATGTTATGTT+TGG | - | chr1_1:44153863-44153882 | Msa0023200:intron | 30.0% | |
| TAATTAGGGTTATGGAAATG+GGG | + | chr1_1:44154065-44154084 | None:intergenic | 30.0% | |
| CTTAATTAGGGTTATGGAAA+TGG | + | chr1_1:44154067-44154086 | None:intergenic | 30.0% | |
| !! | ATGCACAAATTTAGGTTTTC+TGG | - | chr1_1:44154142-44154161 | Msa0023200:three_prime_UTR | 30.0% |
| !! | TGCACAAATTTAGGTTTTCT+GGG | - | chr1_1:44154143-44154162 | Msa0023200:three_prime_UTR | 30.0% |
| AATTGCTTCGATACTTTAGA+AGG | + | chr1_1:44154406-44154425 | None:intergenic | 30.0% | |
| ! | TATCTTTTTGTATGCAATGC+AGG | - | chr1_1:44154571-44154590 | Msa0023200:intron | 30.0% |
| CATTTAAACTGTTTGACCTT+GGG | - | chr1_1:44154729-44154748 | Msa0023200:intron | 30.0% | |
| ! | TTGTTCATCATTTTCCCTTT+AGG | - | chr1_1:44154802-44154821 | Msa0023200:intron | 30.0% |
| TCTGTGTTAATTTACCCTTT+AGG | - | chr1_1:44154882-44154901 | Msa0023200:intron | 30.0% | |
| ! | AAATTGATTCTATGCAGGTT+TGG | + | chr1_1:44155026-44155045 | None:intergenic | 30.0% |
| ! | GACATAAATTGATTCTATGC+AGG | + | chr1_1:44155031-44155050 | None:intergenic | 30.0% |
| GTGACATCAAAATCTCTAAA+TGG | - | chr1_1:44155158-44155177 | Msa0023200:intron | 30.0% | |
| ACTACTAAAGTTACATGAGA+AGG | + | chr1_1:44155231-44155250 | None:intergenic | 30.0% | |
| CGATATTGTTGAATCCATTA+TGG | - | chr1_1:44155389-44155408 | Msa0023200:intron | 30.0% | |
| TGTTGAATCCATTATGGAAA+AGG | - | chr1_1:44155395-44155414 | Msa0023200:intron | 30.0% | |
| ! | GTTAAGAACCTTTTCCATAA+TGG | + | chr1_1:44155406-44155425 | None:intergenic | 30.0% |
| ATTGAAGGAGGATAAATGTA+TGG | + | chr1_1:44155438-44155457 | None:intergenic | 30.0% | |
| GAAACTATAGAAATTGAAGG+AGG | + | chr1_1:44155450-44155469 | None:intergenic | 30.0% | |
| GAGGAAACTATAGAAATTGA+AGG | + | chr1_1:44155453-44155472 | None:intergenic | 30.0% | |
| AAGAGAAAAGAATGAAACTG+AGG | + | chr1_1:44155472-44155491 | None:intergenic | 30.0% | |
| TTCATTGTCTAAAAAAGACC+AGG | + | chr1_1:44155510-44155529 | None:intergenic | 30.0% | |
| !!! | TGGTCTTTTTTAGACAATGA+AGG | - | chr1_1:44155509-44155528 | Msa0023200:intron | 30.0% |
| !!! | TCTTTTTTAGACAATGAAGG+AGG | - | chr1_1:44155512-44155531 | Msa0023200:intron | 30.0% |
| TATATAATGTGCAGAAGTTG+AGG | - | chr1_1:44155670-44155689 | Msa0023200:intron | 30.0% | |
| CTTTAGACAGTTCAGTATAA+GGG | + | chr1_1:44155713-44155732 | None:intergenic | 30.0% | |
| CCAATTCTTTGAACTAAATC+TGG | + | chr1_1:44155876-44155895 | None:intergenic | 30.0% | |
| ! | CCAGATTTAGTTCAAAGAAT+TGG | - | chr1_1:44155873-44155892 | Msa0023200:intron | 30.0% |
| GAACCACATTGAATATGATA+TGG | - | chr1_1:44156082-44156101 | Msa0023200:CDS | 30.0% | |
| !! | AATATCGGTTTGTAAGGTAA+GGG | + | chr1_1:44156137-44156156 | None:intergenic | 30.0% |
| AAAGCTTAAAATTTCCTGGA+TGG | - | chr1_1:44156348-44156367 | Msa0023200:intron | 30.0% | |
| ! | GAGATTACTCTTTTCAAACT+AGG | - | chr1_1:44156451-44156470 | Msa0023200:intron | 30.0% |
| AACAAACTAACTACCTAAAC+AGG | - | chr1_1:44156560-44156579 | Msa0023200:intron | 30.0% | |
| !!! | GTTTTAGTTGTTTCCTGTTT+AGG | + | chr1_1:44156576-44156595 | None:intergenic | 30.0% |
| !! | GAAGGTGTCAAATACAAATA+GGG | + | chr1_1:44156662-44156681 | None:intergenic | 30.0% |
| !! | AGAAGGTGTCAAATACAAAT+AGG | + | chr1_1:44156663-44156682 | None:intergenic | 30.0% |
| TCTCTCATAGAAGAATTTCA+AGG | + | chr1_1:44156698-44156717 | None:intergenic | 30.0% | |
| AAAAAGAAACACAACATGTC+AGG | + | chr1_1:44156726-44156745 | None:intergenic | 30.0% | |
| ACTTACATATATGAATGGAC+AGG | - | chr1_1:44156812-44156831 | Msa0023200:intron | 30.0% | |
| ACCAATGGAAGTTATATTGA+TGG | + | chr1_1:44156994-44157013 | None:intergenic | 30.0% | |
| !!! | ACATTGTTTTAGTTGTCCAT+AGG | - | chr1_1:44157140-44157159 | Msa0023200:five_prime_UTR | 30.0% |
| !!! | CATTGTTTTAGTTGTCCATA+GGG | - | chr1_1:44157141-44157160 | Msa0023200:five_prime_UTR | 30.0% |
| TTGCAACTATTTAGTACTTC+AGG | - | chr1_1:44157244-44157263 | Msa0023200:five_prime_UTR | 30.0% | |
| ACAAACAAAAGGCAAGTTAT+AGG | - | chr1_1:44157307-44157326 | Msa0023200:five_prime_UTR | 30.0% | |
| CAAACAAAAGGCAAGTTATA+GGG | - | chr1_1:44157308-44157327 | Msa0023200:five_prime_UTR | 30.0% | |
| !! | ATGCTGCAATTCTTTGAAAT+TGG | - | chr1_1:44157367-44157386 | Msa0023200:five_prime_UTR | 30.0% |
| TCGATGTAATGCAAAGAATC+TGG | + | chr1_1:44152643-44152662 | None:intergenic | 35.0% | |
| GAACACCCTACAATTTATGT+AGG | - | chr1_1:44152859-44152878 | Msa0023200:three_prime_UTR | 35.0% | |
| TGATCCTATGAGTGATGAAA+TGG | - | chr1_1:44153215-44153234 | Msa0023200:intron | 35.0% | |
| !!! | CATCATTCTTCTTTTTTGGC+TGG | - | chr1_1:44153396-44153415 | Msa0023200:intron | 35.0% |
| !! | GATTTGGATACTTTTGAAGG+GGG | - | chr1_1:44153644-44153663 | Msa0023200:intron | 35.0% |
| TTCTTGGTATGCCAGAAAAT+TGG | - | chr1_1:44153712-44153731 | Msa0023200:intron | 35.0% | |
| ! | TCTTTATGGGACCAATTTTC+TGG | + | chr1_1:44153726-44153745 | None:intergenic | 35.0% |
| GCTAGATGTTATGTTTGGAA+AGG | - | chr1_1:44153868-44153887 | Msa0023200:intron | 35.0% | |
| !! | ATACATGCATGGCTTTAGAT+TGG | + | chr1_1:44153990-44154009 | None:intergenic | 35.0% |
| AAGAGAAGAAGAATGATACC+TGG | + | chr1_1:44154029-44154048 | None:intergenic | 35.0% | |
| TTATGGAAATGGGGAATTAG+GGG | + | chr1_1:44154056-44154075 | None:intergenic | 35.0% | |
| GTTATGGAAATGGGGAATTA+GGG | + | chr1_1:44154057-44154076 | None:intergenic | 35.0% | |
| ACTGAGACTCCAAAATTGAA+AGG | - | chr1_1:44154110-44154129 | Msa0023200:three_prime_UTR | 35.0% | |
| GGTTTCTTCTGTTTATAGTG+TGG | - | chr1_1:44154358-44154377 | Msa0023200:intron | 35.0% | |
| TTGCTAATACTCAAATGACG+CGG | - | chr1_1:44154462-44154481 | Msa0023200:three_prime_UTR | 35.0% | |
| TTCTCTTCAGATGTCTTTGT+CGG | + | chr1_1:44154610-44154629 | None:intergenic | 35.0% | |
| GCATTTAAACTGTTTGACCT+TGG | - | chr1_1:44154728-44154747 | Msa0023200:intron | 35.0% | |
| CTGCATTACTCAATCCTAAA+GGG | + | chr1_1:44154819-44154838 | None:intergenic | 35.0% | |
| !!! | TTCTATGCAGGTTTGGTTTT+GGG | + | chr1_1:44155019-44155038 | None:intergenic | 35.0% |
| !! | ATTCTATGCAGGTTTGGTTT+TGG | + | chr1_1:44155020-44155039 | None:intergenic | 35.0% |
| TAATGGCATACTGAAGTTGA+AGG | - | chr1_1:44155320-44155339 | Msa0023200:intron | 35.0% | |
| GTCATGATCTTAAGAAGAGA+AGG | + | chr1_1:44155600-44155619 | None:intergenic | 35.0% | |
| ! | GCTTTAGACAGTTCAGTATA+AGG | + | chr1_1:44155714-44155733 | None:intergenic | 35.0% |
| AGGCCATATCATATTCAATG+TGG | + | chr1_1:44156088-44156107 | None:intergenic | 35.0% | |
| !! | CAATATCGGTTTGTAAGGTA+AGG | + | chr1_1:44156138-44156157 | None:intergenic | 35.0% |
| CTAACTCAACCTCACAATAT+CGG | + | chr1_1:44156152-44156171 | None:intergenic | 35.0% | |
| AGTTCTTTCGTATAGACACT+TGG | - | chr1_1:44156201-44156220 | Msa0023200:intron | 35.0% | |
| ! | TGCTCCAGATTTTCAATCAT+AGG | - | chr1_1:44156228-44156247 | Msa0023200:intron | 35.0% |
| GATGCCTATGATTGAAAATC+TGG | + | chr1_1:44156235-44156254 | None:intergenic | 35.0% | |
| TTTCAATCATAGGCATCTCT+AGG | - | chr1_1:44156238-44156257 | Msa0023200:intron | 35.0% | |
| ACTCAACTCATTCGCAAAAA+GGG | - | chr1_1:44156294-44156313 | Msa0023200:intron | 35.0% | |
| AACACATAACATAACCATCC+AGG | + | chr1_1:44156365-44156384 | None:intergenic | 35.0% | |
| !! | TGTGTTTTGTTAGGATTCTG+AGG | - | chr1_1:44156379-44156398 | Msa0023200:intron | 35.0% |
| TGAGGCAACAAGAGAAAAAA+GGG | - | chr1_1:44156397-44156416 | Msa0023200:intron | 35.0% | |
| ACTGAATCATAAAGATGCCT+AGG | - | chr1_1:44156494-44156513 | Msa0023200:intron | 35.0% | |
| ATAAATAGAAGAACGGGATC+AGG | + | chr1_1:44156520-44156539 | None:intergenic | 35.0% | |
| ! | TTTAGGGTACTCCTTTATAC+AGG | + | chr1_1:44156621-44156640 | None:intergenic | 35.0% |
| ! | TCTTTAGTTTCAGACTTGCA+AGG | - | chr1_1:44156909-44156928 | Msa0023200:intron | 35.0% |
| GCCATCAATATAACTTCCAT+TGG | - | chr1_1:44156990-44157009 | Msa0023200:intron | 35.0% | |
| ! | GAAAATGATGGTTACTGGTT+AGG | + | chr1_1:44157170-44157189 | None:intergenic | 35.0% |
| CGGATAAACCAATTTCGATT+TGG | - | chr1_1:44157331-44157350 | Msa0023200:five_prime_UTR | 35.0% | |
| ! | ATTGGATTATGGTCTAGCTT+TGG | - | chr1_1:44157396-44157415 | Msa0023200:five_prime_UTR | 35.0% |
| !! | TTGGATTATGGTCTAGCTTT+GGG | - | chr1_1:44157397-44157416 | Msa0023200:five_prime_UTR | 35.0% |
| TGTAATGCAAAGAATCTGGC+TGG | + | chr1_1:44152639-44152658 | None:intergenic | 40.0% | |
| ! | ATGTAGGCTATAATGGAGGT+TGG | - | chr1_1:44152875-44152894 | Msa0023200:three_prime_UTR | 40.0% |
| CAATGAGATACGATACCTCA+GGG | + | chr1_1:44152965-44152984 | None:intergenic | 40.0% | |
| ACAATGAGATACGATACCTC+AGG | + | chr1_1:44152966-44152985 | None:intergenic | 40.0% | |
| CACTCCATTTCATCACTCAT+AGG | + | chr1_1:44153222-44153241 | None:intergenic | 40.0% | |
| !!! | CATTCTTCTTTTTTGGCTGG+TGG | - | chr1_1:44153399-44153418 | Msa0023200:intron | 40.0% |
| GTAAAGTCACATATACACCC+AGG | + | chr1_1:44153528-44153547 | None:intergenic | 40.0% | |
| TCCTCCTGCAACTTCTTTAT+GGG | + | chr1_1:44153739-44153758 | None:intergenic | 40.0% | |
| TTCCTCCTGCAACTTCTTTA+TGG | + | chr1_1:44153740-44153759 | None:intergenic | 40.0% | |
| TAAAGAAGTTGCAGGAGGAA+TGG | - | chr1_1:44153740-44153759 | Msa0023200:intron | 40.0% | |
| GGGAAACACTTATACATGCA+TGG | + | chr1_1:44154001-44154020 | None:intergenic | 40.0% | |
| GAAGAAGAATGATACCTGGT+CGG | + | chr1_1:44154025-44154044 | None:intergenic | 40.0% | |
| GGTTATGGAAATGGGGAATT+AGG | + | chr1_1:44154058-44154077 | None:intergenic | 40.0% | |
| ! | AATGGGTTTCATTTGCTTGC+AGG | - | chr1_1:44154185-44154204 | Msa0023200:intron | 40.0% |
| !! | GGTGATTCTGTTTCTGTTGT+TGG | - | chr1_1:44154239-44154258 | Msa0023200:intron | 40.0% |
| TGCTAATACTCAAATGACGC+GGG | - | chr1_1:44154463-44154482 | Msa0023200:three_prime_UTR | 40.0% | |
| GCTGCATTACTCAATCCTAA+AGG | + | chr1_1:44154820-44154839 | None:intergenic | 40.0% | |
| AGGATTGAGTAATGCAGCTT+TGG | - | chr1_1:44154822-44154841 | Msa0023200:intron | 40.0% | |
| GTTTGGATTCACGCTGAATT+TGG | - | chr1_1:44154918-44154937 | Msa0023200:intron | 40.0% | |
| !!! | TGGCAAACTCACGTTGATTT+TGG | - | chr1_1:44154938-44154957 | Msa0023200:intron | 40.0% |
| !!! | TTTGGTTTTGGGGACAACAT+TGG | + | chr1_1:44155008-44155027 | None:intergenic | 40.0% |
| !!! | TCTATGCAGGTTTGGTTTTG+GGG | + | chr1_1:44155018-44155037 | None:intergenic | 40.0% |
| CATACTGAAGTTGAAGGAGA+TGG | - | chr1_1:44155326-44155345 | Msa0023200:intron | 40.0% | |
| CTTATACTTCTTTCTTGGCC+TGG | - | chr1_1:44155489-44155508 | Msa0023200:intron | 40.0% | |
| ! | ATGAAGGAGGTTGACTCAAA+AGG | - | chr1_1:44155525-44155544 | Msa0023200:intron | 40.0% |
| ! | AGGTTGACTCAAAAGGAGAT+GGG | - | chr1_1:44155532-44155551 | Msa0023200:intron | 40.0% |
| AGGAGATGGGAAGATTGATA+TGG | - | chr1_1:44155545-44155564 | Msa0023200:intron | 40.0% | |
| GGAAGATTGATATGGAAGAG+TGG | - | chr1_1:44155553-44155572 | Msa0023200:intron | 40.0% | |
| ! | GACTCTGCCATATCTAAAGT+AGG | - | chr1_1:44155617-44155636 | Msa0023200:three_prime_UTR | 40.0% |
| TCACTTGAACTTAGAGCAAG+TGG | - | chr1_1:44155906-44155925 | Msa0023200:intron | 40.0% | |
| !! | CCTCACAATATCGGTTTGTA+AGG | + | chr1_1:44156143-44156162 | None:intergenic | 40.0% |
| CCTTACAAACCGATATTGTG+AGG | - | chr1_1:44156140-44156159 | Msa0023200:CDS | 40.0% | |
| CGATATTGTGAGGTTGAGTT+AGG | - | chr1_1:44156150-44156169 | Msa0023200:CDS | 40.0% | |
| GACTCAACTCATTCGCAAAA+AGG | - | chr1_1:44156293-44156312 | Msa0023200:intron | 40.0% | |
| AGGGATGTACACTCTTTCTA+TGG | - | chr1_1:44156313-44156332 | Msa0023200:intron | 40.0% | |
| GGGATGTACACTCTTTCTAT+GGG | - | chr1_1:44156314-44156333 | Msa0023200:intron | 40.0% | |
| CTGAGGCAACAAGAGAAAAA+AGG | - | chr1_1:44156396-44156415 | Msa0023200:intron | 40.0% | |
| AAAAGGGAATTATTCGTCCC+TGG | - | chr1_1:44156413-44156432 | Msa0023200:intron | 40.0% | |
| TCTCTTGTGTACAAACTCCA+GGG | + | chr1_1:44156433-44156452 | None:intergenic | 40.0% | |
| !! | AGTGATAACGGCCTGTATAA+AGG | - | chr1_1:44156607-44156626 | Msa0023200:five_prime_UTR | 40.0% |
| ! | TTCGATGTCTTTCTGGAGAT+TGG | + | chr1_1:44156935-44156954 | None:intergenic | 40.0% |
| AATCTCCAGAAAGACATCGA+AGG | - | chr1_1:44156934-44156953 | Msa0023200:intron | 40.0% | |
| ATCTCCAGAAAGACATCGAA+GGG | - | chr1_1:44156935-44156954 | Msa0023200:intron | 40.0% | |
| ! | TTACTGGTTAGGAATCCCTA+TGG | + | chr1_1:44157159-44157178 | None:intergenic | 40.0% |
| ACAAAAGGCAAGTTATAGGG+CGG | - | chr1_1:44157311-44157330 | Msa0023200:five_prime_UTR | 40.0% | |
| TGATAAGCGGTTTCCTGCTT+GGG | - | chr1_1:44152922-44152941 | Msa0023200:three_prime_UTR | 45.0% | |
| TTAGGAGGAAAGATACCCTG+AGG | - | chr1_1:44152947-44152966 | Msa0023200:three_prime_UTR | 45.0% | |
| GCAATCGTCCAATCCAACTA+TGG | + | chr1_1:44153195-44153214 | None:intergenic | 45.0% | |
| TACCTCCAGAATTCCATCCT+CGG | + | chr1_1:44153454-44153473 | None:intergenic | 45.0% | |
| TGGTCCCATAAAGAAGTTGC+AGG | - | chr1_1:44153732-44153751 | Msa0023200:intron | 45.0% | |
| TCCCATAAAGAAGTTGCAGG+AGG | - | chr1_1:44153735-44153754 | Msa0023200:intron | 45.0% | |
| GAAAGGTTTCCTCCCTTCTA+CGG | - | chr1_1:44153885-44153904 | Msa0023200:intron | 45.0% | |
| AGAATGGCTTCTCCGTAGAA+GGG | + | chr1_1:44153900-44153919 | None:intergenic | 45.0% | |
| TCTCTCTTACTCTTCCTCAC+CGG | + | chr1_1:44153956-44153975 | None:intergenic | 45.0% | |
| GAGGAAGAGTAAGAGAGAGA+CGG | - | chr1_1:44153958-44153977 | Msa0023200:intron | 45.0% | |
| AAGAATGATACCTGGTCGGA+GGG | + | chr1_1:44154021-44154040 | None:intergenic | 45.0% | |
| GCAGGTCAAAAACCGAAAAG+AGG | - | chr1_1:44154203-44154222 | Msa0023200:intron | 45.0% | |
| CAATGTATCCAGTCTTCCCA+AGG | + | chr1_1:44154748-44154767 | None:intergenic | 45.0% | |
| TGGATACATTGAGCATAGCG+AGG | - | chr1_1:44154757-44154776 | Msa0023200:intron | 45.0% | |
| ! | GCAGCTTTGGCAAAATCACA+TGG | - | chr1_1:44154835-44154854 | Msa0023200:intron | 45.0% |
| ! | ACCCTTTAGGAGATAGAGTG+TGG | - | chr1_1:44154895-44154914 | Msa0023200:intron | 45.0% |
| CCCACACTCTATCTCCTAAA+GGG | + | chr1_1:44154899-44154918 | None:intergenic | 45.0% | |
| ! | CCCTTTAGGAGATAGAGTGT+GGG | - | chr1_1:44154896-44154915 | Msa0023200:intron | 45.0% |
| ACCCACACTCTATCTCCTAA+AGG | + | chr1_1:44154900-44154919 | None:intergenic | 45.0% | |
| TAGGAGATAGAGTGTGGGTT+TGG | - | chr1_1:44154901-44154920 | Msa0023200:intron | 45.0% | |
| GGACAACATTGGCAGAATCA+CGG | + | chr1_1:44154997-44155016 | None:intergenic | 45.0% | |
| GAAGTTGAAGGAGATGGTCT+TGG | - | chr1_1:44155332-44155351 | Msa0023200:intron | 45.0% | |
| ! | GAGGTTGACTCAAAAGGAGA+TGG | - | chr1_1:44155531-44155550 | Msa0023200:intron | 45.0% |
| CTATACTTGTGCTCCTTGTG+TGG | - | chr1_1:44155935-44155954 | Msa0023200:intron | 45.0% | |
| TGATGCCTTACAACCACACA+AGG | + | chr1_1:44155951-44155970 | None:intergenic | 45.0% | |
| CTCTCTTGTGTACAAACTCC+AGG | + | chr1_1:44156434-44156453 | None:intergenic | 45.0% | |
| AGAAACACAACATGTCAGGC+AGG | + | chr1_1:44156722-44156741 | None:intergenic | 45.0% | |
| TCTCCAGAAAGACATCGAAG+GGG | - | chr1_1:44156936-44156955 | Msa0023200:intron | 45.0% | |
| CTGATAAGCGGTTTCCTGCT+TGG | - | chr1_1:44152921-44152940 | Msa0023200:three_prime_UTR | 50.0% | |
| GATAAGCGGTTTCCTGCTTG+GGG | - | chr1_1:44152923-44152942 | Msa0023200:three_prime_UTR | 50.0% | |
| TTTCCTGCTTGGGGATTAGG+AGG | - | chr1_1:44152932-44152951 | Msa0023200:three_prime_UTR | 50.0% | |
| TTTCCTCCTAATCCCCAAGC+AGG | + | chr1_1:44152938-44152957 | None:intergenic | 50.0% | |
| !! | TGGGAGTCTAACTAGCTCTG+AGG | - | chr1_1:44152997-44153016 | Msa0023200:three_prime_UTR | 50.0% |
| TGAAGCCGAGGATGGAATTC+TGG | - | chr1_1:44153446-44153465 | Msa0023200:intron | 50.0% | |
| GAGAATGGCTTCTCCGTAGA+AGG | + | chr1_1:44153901-44153920 | None:intergenic | 50.0% | |
| ATTCTCCTCCGTCACAACTG+CGG | - | chr1_1:44153915-44153934 | Msa0023200:intron | 50.0% | |
| ! | GTTTTTCGCCGCAGTTGTGA+CGG | + | chr1_1:44153926-44153945 | None:intergenic | 50.0% |
| GTCACAACTGCGGCGAAAAA+CGG | - | chr1_1:44153925-44153944 | Msa0023200:intron | 50.0% | |
| ATAAGTGTTTCCCTCCGACC+AGG | - | chr1_1:44154008-44154027 | Msa0023200:intron | 50.0% | |
| GAAGAATGATACCTGGTCGG+AGG | + | chr1_1:44154022-44154041 | None:intergenic | 50.0% | |
| CTGTTTGACCTTGGGAAGAC+TGG | - | chr1_1:44154737-44154756 | Msa0023200:intron | 50.0% | |
| GTGCTCCTTGTGTGGTTGTA+AGG | - | chr1_1:44155943-44155962 | Msa0023200:intron | 50.0% | |
| AGGTCTGCAAAGATCCCAGA+TGG | - | chr1_1:44156832-44156851 | Msa0023200:intron | 50.0% | |
| GGTCTGCAAAGATCCCAGAT+GGG | - | chr1_1:44156833-44156852 | Msa0023200:intron | 50.0% | |
| GTCTGCAAAGATCCCAGATG+GGG | - | chr1_1:44156834-44156853 | Msa0023200:intron | 50.0% | |
| ! | GCAAAGCATCTTCCCCATCT+GGG | + | chr1_1:44156849-44156868 | None:intergenic | 50.0% |
| TAGCCCCTTCGATGTCTTTC+TGG | + | chr1_1:44156942-44156961 | None:intergenic | 50.0% | |
| CGGTTTCCTGCTTGGGGATT+AGG | - | chr1_1:44152929-44152948 | Msa0023200:three_prime_UTR | 55.0% | |
| GTGGAGCTACCTTAGCTGAC+TGG | - | chr1_1:44153418-44153437 | Msa0023200:intron | 55.0% | |
| GAGCTACCTTAGCTGACTGG+CGG | - | chr1_1:44153421-44153440 | Msa0023200:intron | 55.0% | |
| TTCAAGCCGCCAGTCAGCTA+AGG | + | chr1_1:44153430-44153449 | None:intergenic | 55.0% | |
| AGCCGAGGATGGAATTCTGG+AGG | - | chr1_1:44153449-44153468 | Msa0023200:intron | 55.0% | |
| ATGGCTTCTCCGTAGAAGGG+AGG | + | chr1_1:44153897-44153916 | None:intergenic | 55.0% | |
| ! | GCAGTTGTGACGGAGGAGAA+TGG | + | chr1_1:44153916-44153935 | None:intergenic | 55.0% |
| ACAACTGCGGCGAAAAACGG+CGG | - | chr1_1:44153928-44153947 | Msa0023200:intron | 55.0% | |
| AGAAGAACGGGATCAGGCCT+AGG | + | chr1_1:44156514-44156533 | None:intergenic | 55.0% | |
| ! | CGCAAAGCATCTTCCCCATC+TGG | + | chr1_1:44156850-44156869 | None:intergenic | 55.0% |
| TCGAAGGGGCTACCCATTTG+TGG | - | chr1_1:44156950-44156969 | Msa0023200:intron | 55.0% | |
| CCTACCTCCCAGCCACAAAT+GGG | + | chr1_1:44156965-44156984 | None:intergenic | 55.0% | |
| TTTCGCCGCAGTTGTGACGG+AGG | + | chr1_1:44153923-44153942 | None:intergenic | 60.0% | |
| AGGGGCTACCCATTTGTGGC+TGG | - | chr1_1:44156954-44156973 | Msa0023200:intron | 60.0% | |
| GGGGCTACCCATTTGTGGCT+GGG | - | chr1_1:44156955-44156974 | Msa0023200:intron | 60.0% | |
| GCTACCCATTTGTGGCTGGG+AGG | - | chr1_1:44156958-44156977 | Msa0023200:intron | 60.0% | |
| CCCATTTGTGGCTGGGAGGT+AGG | - | chr1_1:44156962-44156981 | Msa0023200:intron | 60.0% | |
| GCCTACCTCCCAGCCACAAA+TGG | + | chr1_1:44156966-44156985 | None:intergenic | 60.0% | |
| TGACTGGCGGCTTGAAGCCG+AGG | - | chr1_1:44153434-44153453 | Msa0023200:intron | 65.0% | |
| TGGCGGCTTGAAGCCGAGGA+TGG | - | chr1_1:44153438-44153457 | Msa0023200:intron | 65.0% | |
| !! | GAAAAACGGCGGCGCCGGTG+AGG | - | chr1_1:44153939-44153958 | Msa0023200:intron | 70.0% |
| GCGGCGAAAAACGGCGGCGC+CGG | - | chr1_1:44153934-44153953 | Msa0023200:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 44152578 | 44157473 | 44152578 | ID=Msa0023200;Name=Msa0023200 |
| chr1_1 | mRNA | 44152578 | 44157473 | 44152578 | ID=Msa0023200-mRNA-1;Parent=Msa0023200;Name=Msa0023200-mRNA-1;_AED=0.23;_eAED=0.23;_QI=521|1|1|1|0.3|0.54|11|1240|36 |
| chr1_1 | exon | 44152578 | 44153217 | 44152578 | ID=Msa0023200-mRNA-1:exon:12728;Parent=Msa0023200-mRNA-1 |
| chr1_1 | exon | 44154092 | 44154182 | 44154092 | ID=Msa0023200-mRNA-1:exon:12727;Parent=Msa0023200-mRNA-1 |
| chr1_1 | exon | 44154417 | 44154529 | 44154417 | ID=Msa0023200-mRNA-1:exon:12726;Parent=Msa0023200-mRNA-1 |
| chr1_1 | exon | 44154635 | 44154715 | 44154635 | ID=Msa0023200-mRNA-1:exon:12725;Parent=Msa0023200-mRNA-1 |
| chr1_1 | exon | 44155273 | 44155325 | 44155273 | ID=Msa0023200-mRNA-1:exon:12724;Parent=Msa0023200-mRNA-1 |
| chr1_1 | exon | 44155411 | 44155458 | 44155411 | ID=Msa0023200-mRNA-1:exon:12723;Parent=Msa0023200-mRNA-1 |
| chr1_1 | exon | 44155567 | 44155649 | 44155567 | ID=Msa0023200-mRNA-1:exon:12722;Parent=Msa0023200-mRNA-1 |
| chr1_1 | exon | 44155774 | 44155844 | 44155774 | ID=Msa0023200-mRNA-1:exon:12721;Parent=Msa0023200-mRNA-1 |
| chr1_1 | exon | 44156022 | 44156178 | 44156022 | ID=Msa0023200-mRNA-1:exon:12720;Parent=Msa0023200-mRNA-1 |
| chr1_1 | exon | 44156581 | 44156674 | 44156581 | ID=Msa0023200-mRNA-1:exon:12719;Parent=Msa0023200-mRNA-1 |
| chr1_1 | exon | 44157033 | 44157473 | 44157033 | ID=Msa0023200-mRNA-1:exon:12718;Parent=Msa0023200-mRNA-1 |
| chr1_1 | five_prime_UTR | 44157033 | 44157473 | 44157033 | ID=Msa0023200-mRNA-1:five_prime_utr;Parent=Msa0023200-mRNA-1 |
| chr1_1 | five_prime_UTR | 44156595 | 44156674 | 44156595 | ID=Msa0023200-mRNA-1:five_prime_utr;Parent=Msa0023200-mRNA-1 |
| chr1_1 | CDS | 44156581 | 44156594 | 44156581 | ID=Msa0023200-mRNA-1:cds;Parent=Msa0023200-mRNA-1 |
| chr1_1 | CDS | 44156082 | 44156178 | 44156082 | ID=Msa0023200-mRNA-1:cds;Parent=Msa0023200-mRNA-1 |
| chr1_1 | three_prime_UTR | 44156022 | 44156081 | 44156022 | ID=Msa0023200-mRNA-1:three_prime_utr;Parent=Msa0023200-mRNA-1 |
| chr1_1 | three_prime_UTR | 44155774 | 44155844 | 44155774 | ID=Msa0023200-mRNA-1:three_prime_utr;Parent=Msa0023200-mRNA-1 |
| chr1_1 | three_prime_UTR | 44155567 | 44155649 | 44155567 | ID=Msa0023200-mRNA-1:three_prime_utr;Parent=Msa0023200-mRNA-1 |
| chr1_1 | three_prime_UTR | 44155411 | 44155458 | 44155411 | ID=Msa0023200-mRNA-1:three_prime_utr;Parent=Msa0023200-mRNA-1 |
| chr1_1 | three_prime_UTR | 44155273 | 44155325 | 44155273 | ID=Msa0023200-mRNA-1:three_prime_utr;Parent=Msa0023200-mRNA-1 |
| chr1_1 | three_prime_UTR | 44154635 | 44154715 | 44154635 | ID=Msa0023200-mRNA-1:three_prime_utr;Parent=Msa0023200-mRNA-1 |
| chr1_1 | three_prime_UTR | 44154417 | 44154529 | 44154417 | ID=Msa0023200-mRNA-1:three_prime_utr;Parent=Msa0023200-mRNA-1 |
| chr1_1 | three_prime_UTR | 44154092 | 44154182 | 44154092 | ID=Msa0023200-mRNA-1:three_prime_utr;Parent=Msa0023200-mRNA-1 |
| chr1_1 | three_prime_UTR | 44152578 | 44153217 | 44152578 | ID=Msa0023200-mRNA-1:three_prime_utr;Parent=Msa0023200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
