AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1410210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1410210 MtrunA17_Chr5g0441911 88.356 438 8 2 1 396 1 437 0.0 784
Msa1410210 MtrunA17_Chr3g0094501 59.823 453 115 7 1 396 1 443 1.69e-173 491
Msa1410210 MtrunA17_Chr5g0445221 40.674 386 187 10 32 396 53 417 8.37e-86 266
Msa1410210 MtrunA17_Chr3g0101031 39.075 389 203 9 32 396 54 432 2.66e-81 256
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1410210 AT5G12300.1 53.247 385 130 11 33 396 19 374 3.38e-113 336
Msa1410210 AT5G55530.2 40.591 372 200 9 32 396 48 405 6.44e-85 264
Msa1410210 AT5G55530.1 40.591 372 200 9 32 396 48 405 6.44e-85 264
Msa1410210 AT5G55530.3 40.591 372 200 9 32 396 48 405 6.44e-85 264
Msa1410210 AT1G50570.2 40.260 385 184 9 29 396 33 388 9.25e-85 263
Msa1410210 AT1G50570.1 40.260 385 184 9 29 396 33 388 9.25e-85 263

Find 55 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCAACAATTTGTGAAAT+TGG 0.112542 tig0023620:-15638 None:intergenic
CCGCTATGATCTTGTCTTTC+GGG 0.138670 tig0023620:-16459 None:intergenic
AACTTCTTGTTCTCATGATT+TGG 0.220949 tig0023620:-16492 None:intergenic
TGTGTAGCTCTATTCAAATT+TGG 0.233288 tig0023620:-15311 None:intergenic
ACCGCTATGATCTTGTCTTT+CGG 0.271993 tig0023620:-16460 None:intergenic
CTGTTATGAAATGTGAAATT+TGG 0.279391 tig0023620:+15558 Msa1410210:CDS
AGAAATCGACAATAAGAAAA+AGG 0.318863 tig0023620:+16515 Msa1410210:CDS
AGCATAGAAGTAACAAAGTT+TGG 0.319974 tig0023620:+16288 Msa1410210:CDS
TTCCAACAATTTGTGAAATT+GGG 0.331184 tig0023620:-15637 None:intergenic
ATTATCTTTAGACACATCTT+TGG 0.351395 tig0023620:+15736 Msa1410210:CDS
TCAATTCTTGAATACTCAAT+TGG 0.352551 tig0023620:-15839 None:intergenic
TCCTGACATAAGTGTTGTTA+AGG 0.358977 tig0023620:+15865 Msa1410210:CDS
TTGCTGCCATTTCTTCATCT+TGG 0.384771 tig0023620:+15956 Msa1410210:CDS
TCAAGATTAATATTCCCTAA+TGG 0.389292 tig0023620:-16327 None:intergenic
GGAATTGTGAAGGCTTTCAT+TGG 0.401534 tig0023620:-16056 None:intergenic
ATTTCACAAATTGTTGGAAA+AGG 0.401795 tig0023620:+15641 Msa1410210:CDS
CTTGTAGAAAGAGTTTCATC+AGG 0.408913 tig0023620:-15464 None:intergenic
AATGAAAGCCTTCACAATTC+CGG 0.426166 tig0023620:+16058 Msa1410210:CDS
GTCCCAATTTCACAAATTGT+TGG 0.426474 tig0023620:+15635 Msa1410210:CDS
GAGTTCGCCAGATGAGAATC+AGG 0.437738 tig0023620:+16018 Msa1410210:CDS
GAATCCACCTGATTCTCATC+TGG 0.447663 tig0023620:-16025 None:intergenic
GTCATCAAAACAACAGCTTT+AGG 0.454918 tig0023620:+15282 Msa1410210:CDS
AAGCCTTCACAATTCCGGTT+TGG 0.455785 tig0023620:+16063 Msa1410210:CDS
GCAACAGTTTACTGAGTCCT+TGG 0.468052 tig0023620:+16404 Msa1410210:CDS
GAAGCACCAAGATGAAGAAA+TGG 0.478364 tig0023620:-15962 None:intergenic
TCCTTAACAACACTTATGTC+AGG 0.485333 tig0023620:-15866 None:intergenic
AAAATTCTCAAACAAAGAAA+AGG 0.487388 tig0023620:+16248 Msa1410210:CDS
GAATTGTGAAGGCTTTCATT+GGG 0.490123 tig0023620:-16055 None:intergenic
TGCTATGCAGAAGCAAATAG+TGG 0.492416 tig0023620:+16362 Msa1410210:CDS
AAAGATATCTGAAGTTATGT+TGG 0.495670 tig0023620:+15814 Msa1410210:CDS
GATAGTAGAGCTTACCAAAC+CGG 0.496758 tig0023620:-16077 None:intergenic
AAAAGGAATGCAAGAAGGAA+AGG 0.505483 tig0023620:+16265 Msa1410210:CDS
TGTTAAGGAGAATCAACAAA+TGG 0.505876 tig0023620:+15880 Msa1410210:CDS
CAAAGAAAAGGAATGCAAGA+AGG 0.507838 tig0023620:+16260 Msa1410210:CDS
GAAGATGAAGCAGAGTTCAC+AGG 0.514799 tig0023620:+15344 Msa1410210:CDS
GGCGAAAATGAAGCTTCCTA+TGG 0.518944 tig0023620:+16425 Msa1410210:CDS
TCTTGAATTGTTGTTACTTG+AGG 0.524311 tig0023620:-15930 None:intergenic
TCGGGTTTGTCAACGTCCAT+AGG 0.526209 tig0023620:-16441 None:intergenic
TTTCATCAGGGTTGTAAGTG+AGG 0.531627 tig0023620:-15451 None:intergenic
GTTAATTGAACAGTTCCAGC+TGG 0.532682 tig0023620:-15713 None:intergenic
CTTTCTACAAGAATAATCAA+TGG 0.534660 tig0023620:+15476 Msa1410210:CDS
AAATAGTGGATATGTATATG+AGG 0.538443 tig0023620:+16376 Msa1410210:CDS
ACAAGAATAATCAATGGAGG+TGG 0.563554 tig0023620:+15482 Msa1410210:CDS
TTCATCAGGGTTGTAAGTGA+GGG 0.567857 tig0023620:-15450 None:intergenic
ACACCAACTTCAAAGAAAGA+AGG 0.576636 tig0023620:+16195 Msa1410210:intron
TTACCAAACCGGAATTGTGA+AGG 0.582333 tig0023620:-16066 None:intergenic
CAACATTCAATGAAAACTTG+AGG 0.590629 tig0023620:+15513 Msa1410210:CDS
GAATATTAATCTTGAAGCTG+AGG 0.593724 tig0023620:+16335 Msa1410210:CDS
AAGATGAAGCAGAGTTCACA+GGG 0.598725 tig0023620:+15345 Msa1410210:CDS
TGTTATGAATGTTTCTAGCA+TGG 0.599484 tig0023620:-15388 None:intergenic
TTGTAGAAAGAGTTTCATCA+GGG 0.607403 tig0023620:-15463 None:intergenic
TAGTAGAGCAAGAATTCACA+TGG 0.626136 tig0023620:+15586 Msa1410210:CDS
TCTACAAGAATAATCAATGG+AGG 0.653951 tig0023620:+15479 Msa1410210:CDS
TTCGCCAGATGAGAATCAGG+TGG 0.666779 tig0023620:+16021 Msa1410210:CDS
CCCGAAAGACAAGATCATAG+CGG 0.770714 tig0023620:+16459 Msa1410210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTCTCAAACAAAGAAA+AGG + tig0023620:16248-16267 Msa1410210:CDS 20.0%
!!! AAGTTTTTAATTCTCCATTA+GGG + tig0023620:16313-16332 Msa1410210:CDS 20.0%
!! AAAATTCTCAAACAAAGAAA+AGG + tig0023620:16248-16267 Msa1410210:CDS 20.0%
!!! AAGTTTTTAATTCTCCATTA+GGG + tig0023620:16313-16332 Msa1410210:CDS 20.0%
! CTTTCTACAAGAATAATCAA+TGG + tig0023620:15476-15495 Msa1410210:CDS 25.0%
! CTGTTATGAAATGTGAAATT+TGG + tig0023620:15558-15577 Msa1410210:CDS 25.0%
! TTCCAACAATTTGTGAAATT+GGG - tig0023620:15640-15659 None:intergenic 25.0%
! TTTCCAACAATTTGTGAAAT+TGG - tig0023620:15641-15660 None:intergenic 25.0%
! ATTTCACAAATTGTTGGAAA+AGG + tig0023620:15641-15660 Msa1410210:CDS 25.0%
! ATTATCTTTAGACACATCTT+TGG + tig0023620:15736-15755 Msa1410210:CDS 25.0%
!! AAAGATATCTGAAGTTATGT+TGG + tig0023620:15814-15833 Msa1410210:CDS 25.0%
! TCAATTCTTGAATACTCAAT+TGG - tig0023620:15842-15861 None:intergenic 25.0%
! TTTGAGAAAAAGAATCATCT+AGG + tig0023620:16136-16155 Msa1410210:intron 25.0%
!!! CAAGTTTTTAATTCTCCATT+AGG + tig0023620:16312-16331 Msa1410210:CDS 25.0%
! TCAAGATTAATATTCCCTAA+TGG - tig0023620:16330-16349 None:intergenic 25.0%
!!! AAATAGTGGATATGTATATG+AGG + tig0023620:16376-16395 Msa1410210:CDS 25.0%
! AGAAATCGACAATAAGAAAA+AGG + tig0023620:16515-16534 Msa1410210:CDS 25.0%
! CTTTCTACAAGAATAATCAA+TGG + tig0023620:15476-15495 Msa1410210:CDS 25.0%
! CTGTTATGAAATGTGAAATT+TGG + tig0023620:15558-15577 Msa1410210:CDS 25.0%
! TTCCAACAATTTGTGAAATT+GGG - tig0023620:15640-15659 None:intergenic 25.0%
! TTTCCAACAATTTGTGAAAT+TGG - tig0023620:15641-15660 None:intergenic 25.0%
! ATTTCACAAATTGTTGGAAA+AGG + tig0023620:15641-15660 Msa1410210:CDS 25.0%
! ATTATCTTTAGACACATCTT+TGG + tig0023620:15736-15755 Msa1410210:CDS 25.0%
!! AAAGATATCTGAAGTTATGT+TGG + tig0023620:15814-15833 Msa1410210:CDS 25.0%
! TCAATTCTTGAATACTCAAT+TGG - tig0023620:15842-15861 None:intergenic 25.0%
! TTTGAGAAAAAGAATCATCT+AGG + tig0023620:16136-16155 Msa1410210:intron 25.0%
!!! CAAGTTTTTAATTCTCCATT+AGG + tig0023620:16312-16331 Msa1410210:CDS 25.0%
! TCAAGATTAATATTCCCTAA+TGG - tig0023620:16330-16349 None:intergenic 25.0%
!!! AAATAGTGGATATGTATATG+AGG + tig0023620:16376-16395 Msa1410210:CDS 25.0%
! AGAAATCGACAATAAGAAAA+AGG + tig0023620:16515-16534 Msa1410210:CDS 25.0%
! TGTGTAGCTCTATTCAAATT+TGG - tig0023620:15314-15333 None:intergenic 30.0%
!! TGTTATGAATGTTTCTAGCA+TGG - tig0023620:15391-15410 None:intergenic 30.0%
TTGTAGAAAGAGTTTCATCA+GGG - tig0023620:15466-15485 None:intergenic 30.0%
TCTACAAGAATAATCAATGG+AGG + tig0023620:15479-15498 Msa1410210:CDS 30.0%
! CTCAAGTTTTCATTGAATGT+TGG - tig0023620:15515-15534 None:intergenic 30.0%
CAACATTCAATGAAAACTTG+AGG + tig0023620:15513-15532 Msa1410210:CDS 30.0%
! ACATGGAAGATCAACTTTTA+GGG + tig0023620:15603-15622 Msa1410210:CDS 30.0%
GAAAAAGATCAGTTGAAGAA+AGG - tig0023620:15688-15707 None:intergenic 30.0%
TGTTAAGGAGAATCAACAAA+TGG + tig0023620:15880-15899 Msa1410210:CDS 30.0%
! TCTTGAATTGTTGTTACTTG+AGG - tig0023620:15933-15952 None:intergenic 30.0%
!! TTTCTTTGAAGTTGGTGTAT+CGG - tig0023620:16193-16212 None:intergenic 30.0%
AGCATAGAAGTAACAAAGTT+TGG + tig0023620:16288-16307 Msa1410210:CDS 30.0%
GAATATTAATCTTGAAGCTG+AGG + tig0023620:16335-16354 Msa1410210:CDS 30.0%
AACTTCTTGTTCTCATGATT+TGG - tig0023620:16495-16514 None:intergenic 30.0%
ATCGACAATAAGAAAAAGGA+TGG + tig0023620:16519-16538 Msa1410210:CDS 30.0%
! TGTGTAGCTCTATTCAAATT+TGG - tig0023620:15314-15333 None:intergenic 30.0%
!! TGTTATGAATGTTTCTAGCA+TGG - tig0023620:15391-15410 None:intergenic 30.0%
TTGTAGAAAGAGTTTCATCA+GGG - tig0023620:15466-15485 None:intergenic 30.0%
TCTACAAGAATAATCAATGG+AGG + tig0023620:15479-15498 Msa1410210:CDS 30.0%
! CTCAAGTTTTCATTGAATGT+TGG - tig0023620:15515-15534 None:intergenic 30.0%
CAACATTCAATGAAAACTTG+AGG + tig0023620:15513-15532 Msa1410210:CDS 30.0%
! ACATGGAAGATCAACTTTTA+GGG + tig0023620:15603-15622 Msa1410210:CDS 30.0%
GAAAAAGATCAGTTGAAGAA+AGG - tig0023620:15688-15707 None:intergenic 30.0%
TGTTAAGGAGAATCAACAAA+TGG + tig0023620:15880-15899 Msa1410210:CDS 30.0%
! TCTTGAATTGTTGTTACTTG+AGG - tig0023620:15933-15952 None:intergenic 30.0%
!! TTTCTTTGAAGTTGGTGTAT+CGG - tig0023620:16193-16212 None:intergenic 30.0%
AGCATAGAAGTAACAAAGTT+TGG + tig0023620:16288-16307 Msa1410210:CDS 30.0%
GAATATTAATCTTGAAGCTG+AGG + tig0023620:16335-16354 Msa1410210:CDS 30.0%
AACTTCTTGTTCTCATGATT+TGG - tig0023620:16495-16514 None:intergenic 30.0%
ATCGACAATAAGAAAAAGGA+TGG + tig0023620:16519-16538 Msa1410210:CDS 30.0%
GTCATCAAAACAACAGCTTT+AGG + tig0023620:15282-15301 Msa1410210:CDS 35.0%
CTTGTAGAAAGAGTTTCATC+AGG - tig0023620:15467-15486 None:intergenic 35.0%
ACAAGAATAATCAATGGAGG+TGG + tig0023620:15482-15501 Msa1410210:CDS 35.0%
TAGTAGAGCAAGAATTCACA+TGG + tig0023620:15586-15605 Msa1410210:CDS 35.0%
! CACATGGAAGATCAACTTTT+AGG + tig0023620:15602-15621 Msa1410210:CDS 35.0%
!!! TCAACTTTTAGGGTTTGCTT+TGG + tig0023620:15613-15632 Msa1410210:CDS 35.0%
GTCCCAATTTCACAAATTGT+TGG + tig0023620:15635-15654 Msa1410210:CDS 35.0%
! TCCTGACATAAGTGTTGTTA+AGG + tig0023620:15865-15884 Msa1410210:CDS 35.0%
TCCTTAACAACACTTATGTC+AGG - tig0023620:15869-15888 None:intergenic 35.0%
GAATTGTGAAGGCTTTCATT+GGG - tig0023620:16058-16077 None:intergenic 35.0%
AATGAAAGCCTTCACAATTC+CGG + tig0023620:16058-16077 Msa1410210:CDS 35.0%
CGGGACAAAGAGTAAAAAAT+TGG - tig0023620:16173-16192 None:intergenic 35.0%
!! TTCTTTGAAGTTGGTGTATC+GGG - tig0023620:16192-16211 None:intergenic 35.0%
ACACCAACTTCAAAGAAAGA+AGG + tig0023620:16195-16214 Msa1410210:intron 35.0%
!! TCACCTTCTTTCTTTGAAGT+TGG - tig0023620:16201-16220 None:intergenic 35.0%
CAAAGAAAAGGAATGCAAGA+AGG + tig0023620:16260-16279 Msa1410210:CDS 35.0%
AAAAGGAATGCAAGAAGGAA+AGG + tig0023620:16265-16284 Msa1410210:CDS 35.0%
GTCATCAAAACAACAGCTTT+AGG + tig0023620:15282-15301 Msa1410210:CDS 35.0%
CTTGTAGAAAGAGTTTCATC+AGG - tig0023620:15467-15486 None:intergenic 35.0%
ACAAGAATAATCAATGGAGG+TGG + tig0023620:15482-15501 Msa1410210:CDS 35.0%
TAGTAGAGCAAGAATTCACA+TGG + tig0023620:15586-15605 Msa1410210:CDS 35.0%
! CACATGGAAGATCAACTTTT+AGG + tig0023620:15602-15621 Msa1410210:CDS 35.0%
!!! TCAACTTTTAGGGTTTGCTT+TGG + tig0023620:15613-15632 Msa1410210:CDS 35.0%
GTCCCAATTTCACAAATTGT+TGG + tig0023620:15635-15654 Msa1410210:CDS 35.0%
! TCCTGACATAAGTGTTGTTA+AGG + tig0023620:15865-15884 Msa1410210:CDS 35.0%
TCCTTAACAACACTTATGTC+AGG - tig0023620:15869-15888 None:intergenic 35.0%
GAATTGTGAAGGCTTTCATT+GGG - tig0023620:16058-16077 None:intergenic 35.0%
AATGAAAGCCTTCACAATTC+CGG + tig0023620:16058-16077 Msa1410210:CDS 35.0%
CGGGACAAAGAGTAAAAAAT+TGG - tig0023620:16173-16192 None:intergenic 35.0%
!! TTCTTTGAAGTTGGTGTATC+GGG - tig0023620:16192-16211 None:intergenic 35.0%
ACACCAACTTCAAAGAAAGA+AGG + tig0023620:16195-16214 Msa1410210:intron 35.0%
!! TCACCTTCTTTCTTTGAAGT+TGG - tig0023620:16201-16220 None:intergenic 35.0%
CAAAGAAAAGGAATGCAAGA+AGG + tig0023620:16260-16279 Msa1410210:CDS 35.0%
AAAAGGAATGCAAGAAGGAA+AGG + tig0023620:16265-16284 Msa1410210:CDS 35.0%
AAGATGAAGCAGAGTTCACA+GGG + tig0023620:15345-15364 Msa1410210:CDS 40.0%
TTCATCAGGGTTGTAAGTGA+GGG - tig0023620:15453-15472 None:intergenic 40.0%
TTTCATCAGGGTTGTAAGTG+AGG - tig0023620:15454-15473 None:intergenic 40.0%
!! GATCTTTTTCATTCTCCAGC+TGG + tig0023620:15698-15717 Msa1410210:CDS 40.0%
GTTAATTGAACAGTTCCAGC+TGG - tig0023620:15716-15735 None:intergenic 40.0%
! TTGCTGCCATTTCTTCATCT+TGG + tig0023620:15956-15975 Msa1410210:CDS 40.0%
! GAAGCACCAAGATGAAGAAA+TGG - tig0023620:15965-15984 None:intergenic 40.0%
GGAATTGTGAAGGCTTTCAT+TGG - tig0023620:16059-16078 None:intergenic 40.0%
TTACCAAACCGGAATTGTGA+AGG - tig0023620:16069-16088 None:intergenic 40.0%
GATAGTAGAGCTTACCAAAC+CGG - tig0023620:16080-16099 None:intergenic 40.0%
! CTTTTTCTCAAACGAGTCTG+CGG - tig0023620:16128-16147 None:intergenic 40.0%
TGCTATGCAGAAGCAAATAG+TGG + tig0023620:16362-16381 Msa1410210:CDS 40.0%
ACCGCTATGATCTTGTCTTT+CGG - tig0023620:16463-16482 None:intergenic 40.0%
AAGATGAAGCAGAGTTCACA+GGG + tig0023620:15345-15364 Msa1410210:CDS 40.0%
TTCATCAGGGTTGTAAGTGA+GGG - tig0023620:15453-15472 None:intergenic 40.0%
TTTCATCAGGGTTGTAAGTG+AGG - tig0023620:15454-15473 None:intergenic 40.0%
!! GATCTTTTTCATTCTCCAGC+TGG + tig0023620:15698-15717 Msa1410210:CDS 40.0%
GTTAATTGAACAGTTCCAGC+TGG - tig0023620:15716-15735 None:intergenic 40.0%
! TTGCTGCCATTTCTTCATCT+TGG + tig0023620:15956-15975 Msa1410210:CDS 40.0%
! GAAGCACCAAGATGAAGAAA+TGG - tig0023620:15965-15984 None:intergenic 40.0%
GGAATTGTGAAGGCTTTCAT+TGG - tig0023620:16059-16078 None:intergenic 40.0%
TTACCAAACCGGAATTGTGA+AGG - tig0023620:16069-16088 None:intergenic 40.0%
GATAGTAGAGCTTACCAAAC+CGG - tig0023620:16080-16099 None:intergenic 40.0%
! CTTTTTCTCAAACGAGTCTG+CGG - tig0023620:16128-16147 None:intergenic 40.0%
TGCTATGCAGAAGCAAATAG+TGG + tig0023620:16362-16381 Msa1410210:CDS 40.0%
ACCGCTATGATCTTGTCTTT+CGG - tig0023620:16463-16482 None:intergenic 40.0%
GAAGATGAAGCAGAGTTCAC+AGG + tig0023620:15344-15363 Msa1410210:CDS 45.0%
GAATCCACCTGATTCTCATC+TGG - tig0023620:16028-16047 None:intergenic 45.0%
AAGCCTTCACAATTCCGGTT+TGG + tig0023620:16063-16082 Msa1410210:CDS 45.0%
GCAACAGTTTACTGAGTCCT+TGG + tig0023620:16404-16423 Msa1410210:CDS 45.0%
! AGGAAGCTTCATTTTCGCCA+AGG - tig0023620:16424-16443 None:intergenic 45.0%
GGCGAAAATGAAGCTTCCTA+TGG + tig0023620:16425-16444 Msa1410210:CDS 45.0%
CCGCTATGATCTTGTCTTTC+GGG - tig0023620:16462-16481 None:intergenic 45.0%
CCCGAAAGACAAGATCATAG+CGG + tig0023620:16459-16478 Msa1410210:CDS 45.0%
! GATGGTTCGCGTGTGTTTTA+TGG + tig0023620:16537-16556 Msa1410210:CDS 45.0%
GAAGATGAAGCAGAGTTCAC+AGG + tig0023620:15344-15363 Msa1410210:CDS 45.0%
GAATCCACCTGATTCTCATC+TGG - tig0023620:16028-16047 None:intergenic 45.0%
AAGCCTTCACAATTCCGGTT+TGG + tig0023620:16063-16082 Msa1410210:CDS 45.0%
GCAACAGTTTACTGAGTCCT+TGG + tig0023620:16404-16423 Msa1410210:CDS 45.0%
! AGGAAGCTTCATTTTCGCCA+AGG - tig0023620:16424-16443 None:intergenic 45.0%
GGCGAAAATGAAGCTTCCTA+TGG + tig0023620:16425-16444 Msa1410210:CDS 45.0%
CCGCTATGATCTTGTCTTTC+GGG - tig0023620:16462-16481 None:intergenic 45.0%
CCCGAAAGACAAGATCATAG+CGG + tig0023620:16459-16478 Msa1410210:CDS 45.0%
! GATGGTTCGCGTGTGTTTTA+TGG + tig0023620:16537-16556 Msa1410210:CDS 45.0%
GAGTTCGCCAGATGAGAATC+AGG + tig0023620:16018-16037 Msa1410210:CDS 50.0%
TTCGCCAGATGAGAATCAGG+TGG + tig0023620:16021-16040 Msa1410210:CDS 50.0%
TCGGGTTTGTCAACGTCCAT+AGG - tig0023620:16444-16463 None:intergenic 50.0%
GAGTTCGCCAGATGAGAATC+AGG + tig0023620:16018-16037 Msa1410210:CDS 50.0%
TTCGCCAGATGAGAATCAGG+TGG + tig0023620:16021-16040 Msa1410210:CDS 50.0%
TCGGGTTTGTCAACGTCCAT+AGG - tig0023620:16444-16463 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
tig0023620 gene 15263 16578 15263 ID=Msa1410210;Name=Msa1410210
tig0023620 mRNA 15263 16578 15263 ID=Msa1410210-mRNA-1;Parent=Msa1410210;Name=Msa1410210-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|1|1|1|2|0|396
tig0023620 exon 15263 16084 15263 ID=Msa1410210-mRNA-1:exon:26444;Parent=Msa1410210-mRNA-1
tig0023620 exon 16210 16578 16210 ID=Msa1410210-mRNA-1:exon:26445;Parent=Msa1410210-mRNA-1
tig0023620 CDS 15263 16084 15263 ID=Msa1410210-mRNA-1:cds;Parent=Msa1410210-mRNA-1
tig0023620 CDS 16210 16578 16210 ID=Msa1410210-mRNA-1:cds;Parent=Msa1410210-mRNA-1
Gene Sequence

>Msa1410210

ATGGATTCATTCAATCAGAGTCATCAAAACAACAGCTTTAGGTACAATCCAAATTTGAATAGAGCTACACAAGTAGATGATGAAGATGAAGCAGAGTTCACAGGGCTTCTTGATGTCTATGTTCACCATGCTAGAAACATTCATAACATTTGCATCTATGATAATCAAGATGTATATGCTAAATTCTCCCTCACTTACAACCCTGATGAAACTCTTTCTACAAGAATAATCAATGGAGGTGGAAAAAATCCAACATTCAATGAAAACTTGAGGATGAAGATAACTCAAATAGATGCTGTTATGAAATGTGAAATTTGGATGTTTAGTAGAGCAAGAATTCACATGGAAGATCAACTTTTAGGGTTTGCTTTGGTCCCAATTTCACAAATTGTTGGAAAAGGAAAAGTAACTGAAGACTATAGCCTTTCTTCAACTGATCTTTTTCATTCTCCAGCTGGAACTGTTCAATTAACATTATCTTTAGACACATCTTTGGTATCAGAATCAACAAATAGTTCGTCGATATCGTCAGAAGTTATTTTGCTTGATAGAAAGATATCTGAAGTTATGTTGGATCCAATTGAGTATTCAAGAATTGAATTTCCTGACATAAGTGTTGTTAAGGAGAATCAACAAATGGTTTCTCAATACTTCAATCTTGCTTGTGCCTCAAGTAACAACAATTCAAGAAAGTTGCTGCCATTTCTTCATCTTGGTGCTTCTCATCAACTTGATGATTATGAAATGATGACTATGAGTTCGCCAGATGAGAATCAGGTGGATTCGATCTCTCCCAATGAAAGCCTTCACAATTCCGGTTTGAAAGAAGGTGATCAATCAAAAGATGATGAGAAAGAAGAAAAATTCTCAAACAAAGAAAAGGAATGCAAGAAGGAAAGGAGCATAGAAGTAACAAAGTTTGGACAAGTTTTTAATTCTCCATTAGGGAATATTAATCTTGAAGCTGAGGAATGTGCTATGCAGAAGCAAATAGTGGATATGTATATGAGGAGCATGCAACAGTTTACTGAGTCCTTGGCGAAAATGAAGCTTCCTATGGACGTTGACAAACCCGAAAGACAAGATCATAGCGGTGATGTGATTCCAAATCATGAGAACAAGAAGTTAGAAATCGACAATAAGAAAAAGGATGGTTCGCGTGTGTTTTATGGTAGTCGAGCGTTTTTCTAA

Protein sequence

>Msa1410210

MDSFNQSHQNNSFRYNPNLNRATQVDDEDEAEFTGLLDVYVHHARNIHNICIYDNQDVYAKFSLTYNPDETLSTRIINGGGKNPTFNENLRMKITQIDAVMKCEIWMFSRARIHMEDQLLGFALVPISQIVGKGKVTEDYSLSSTDLFHSPAGTVQLTLSLDTSLVSESTNSSSISSEVILLDRKISEVMLDPIEYSRIEFPDISVVKENQQMVSQYFNLACASSNNNSRKLLPFLHLGASHQLDDYEMMTMSSPDENQVDSISPNESLHNSGLKEGDQSKDDEKEEKFSNKEKECKKERSIEVTKFGQVFNSPLGNINLEAEECAMQKQIVDMYMRSMQQFTESLAKMKLPMDVDKPERQDHSGDVIPNHENKKLEIDNKKKDGSRVFYGSRAFF*