Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402240 | XP_013468026.1 | 96.679 | 542 | 18 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1082 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402240 | A0A072VKV4 | 96.679 | 542 | 18 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1082 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024610 | Msa0402240 | 0.848615 | 5.476683e-60 | -8.615850e-47 |
| Msa0204770 | Msa0402240 | 0.802272 | 6.070850e-49 | -8.615850e-47 |
| Msa0402240 | Msa0402250 | 0.988836 | 1.313443e-175 | -8.615850e-47 |
| Msa0402240 | Msa0708900 | 0.930138 | 2.532526e-93 | -8.615850e-47 |
| Msa0402240 | Msa0708910 | 0.924208 | 9.570732e-90 | -8.615850e-47 |
| Msa0402240 | Msa0806270 | 0.804246 | 2.368124e-49 | -8.615850e-47 |
| Msa0402240 | Msa0829510 | 0.810454 | 1.143379e-50 | -8.615850e-47 |
| Msa0355170 | Msa0402240 | 0.959206 | 3.459693e-117 | -8.615850e-47 |
| Msa0355180 | Msa0402240 | 0.970733 | 4.561608e-132 | -8.615850e-47 |
| Msa0355190 | Msa0402240 | 0.977954 | 7.966693e-145 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402240 | MtrunA17_Chr1g0178981 | 96.679 | 542 | 18 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1082 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402240 | AT1G19485.1 | 35.378 | 489 | 204 | 16 | 62 | 542 | 8 | 392 | 1.89e-69 | 239 |
| Msa0402240 | AT1G19485.2 | 35.378 | 489 | 204 | 16 | 62 | 542 | 8 | 392 | 1.89e-69 | 239 |
Find 131 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATTGGTTCTCACAATT+TGG | 0.152126 | 3_2:-30177500 | None:intergenic |
| TGGTTCATCTTATCACAAAA+TGG | 0.221693 | 3_2:+30177058 | Msa0402240:CDS |
| TATGGTGTCTTCTAAATATC+AGG | 0.232318 | 3_2:+30177114 | Msa0402240:CDS |
| AATAATGGCCTACTTGTATC+TGG | 0.238881 | 3_2:-30177794 | None:intergenic |
| TGTATTCGCAGCAGCTTTCT+TGG | 0.251698 | 3_2:-30177636 | None:intergenic |
| ACCTTTCACAAAAGGGATTA+AGG | 0.259506 | 3_2:+30174058 | Msa0402240:five_prime_UTR |
| GTATGCAGAAGCAGCTTTCT+TGG | 0.268262 | 3_2:-30177708 | None:intergenic |
| ACTCTCTTGTTTGCAATTGC+AGG | 0.291928 | 3_2:-30174155 | None:intergenic |
| GCATTCTTTCCCTTTGTATT+CGG | 0.294913 | 3_2:-30177686 | None:intergenic |
| ATTAGGTTTACTTACGGAAT+TGG | 0.296469 | 3_2:+30175076 | Msa0402240:CDS |
| GGGCTATCTTGCTGTCTTGT+TGG | 0.306280 | 3_2:+30178012 | Msa0402240:CDS |
| GGCTATCTTGCTGTCTTGTT+GGG | 0.307911 | 3_2:+30178013 | Msa0402240:CDS |
| AATATCCATCTAAAAGCATT+AGG | 0.316447 | 3_2:+30175059 | Msa0402240:CDS |
| CAGGGTTTGAATATCAGTTC+TGG | 0.319518 | 3_2:+30174116 | Msa0402240:five_prime_UTR |
| AAAATGGGTGCCTCACTTAC+TGG | 0.325896 | 3_2:+30177074 | Msa0402240:CDS |
| ATTTCTCCAGATGTAGTTCC+TGG | 0.344586 | 3_2:+30177560 | Msa0402240:CDS |
| GAACAGTAAGAGGAACAAAT+TGG | 0.352749 | 3_2:-30177514 | None:intergenic |
| GAAATAAATTCAGCTGAATC+TGG | 0.353877 | 3_2:-30177542 | None:intergenic |
| TAAATAGTGTGGCAAAAGTT+AGG | 0.358408 | 3_2:-30174199 | None:intergenic |
| CTTGTTGGGCAATGGATCTC+TGG | 0.375077 | 3_2:+30178027 | Msa0402240:CDS |
| TTCTCACACTGAATCAATAA+TGG | 0.377014 | 3_2:-30177809 | None:intergenic |
| ATACTTGGATTCTTGAGGTT+TGG | 0.380840 | 3_2:-30175362 | None:intergenic |
| GCAGAGGTGCCGTGCAAATA+TGG | 0.381854 | 3_2:+30177096 | Msa0402240:CDS |
| GTAGGTTGGATATTAATCAT+AGG | 0.390058 | 3_2:+30177756 | Msa0402240:CDS |
| GGGCATTTACCTTTCACAAA+AGG | 0.395838 | 3_2:+30174050 | Msa0402240:five_prime_UTR |
| GCGTTGTTTATCAACAGAAC+AGG | 0.403768 | 3_2:+30174080 | Msa0402240:five_prime_UTR |
| GGCATTTACCTTTCACAAAA+GGG | 0.424513 | 3_2:+30174051 | Msa0402240:five_prime_UTR |
| TTAGGTTTACTTACGGAATT+GGG | 0.426191 | 3_2:+30175077 | Msa0402240:CDS |
| ATATCAAACAAAGAAACCTT+AGG | 0.426697 | 3_2:-30174356 | None:intergenic |
| GATGCTTGAGGTTCCAATAC+AGG | 0.430718 | 3_2:-30177860 | None:intergenic |
| AGGGTTTGAATATCAGTTCT+GGG | 0.431046 | 3_2:+30174117 | Msa0402240:five_prime_UTR |
| GCTGTTGCTGCTCATCCGCC+TGG | 0.432574 | 3_2:+30177038 | Msa0402240:CDS |
| CTTGCTGTCTTGTTGGGCAA+TGG | 0.437681 | 3_2:+30178019 | Msa0402240:CDS |
| GAACTGCCAGGAACTACATC+TGG | 0.439083 | 3_2:-30177566 | None:intergenic |
| GTTCTGTATGGGCATTAGAT+TGG | 0.440759 | 3_2:+30175577 | Msa0402240:CDS |
| ACCACATGGTAGCCCTGTAT+TGG | 0.442858 | 3_2:+30177847 | Msa0402240:CDS |
| GCATCTGGTAGTGTCTCAAA+TGG | 0.442876 | 3_2:+30177374 | Msa0402240:CDS |
| AGGTGGCATGGGATGTCAAA+TGG | 0.446867 | 3_2:+30177948 | Msa0402240:CDS |
| TCACATTTAATTGAACAATC+AGG | 0.451414 | 3_2:-30175621 | None:intergenic |
| TGCAAAAGGAGGAGCAACTT+GGG | 0.454385 | 3_2:+30175335 | Msa0402240:CDS |
| TCAGGCTCCCCATGCATCCT+AGG | 0.455090 | 3_2:-30175603 | None:intergenic |
| TTCATCTGCCACTGTTCCTA+AGG | 0.455578 | 3_2:+30175156 | Msa0402240:CDS |
| CGAGAATTTCTTTGAAGACA+TGG | 0.460588 | 3_2:+30174385 | Msa0402240:CDS |
| AAAAGCATTAGGTTTACTTA+CGG | 0.463447 | 3_2:+30175070 | Msa0402240:CDS |
| CCACCTTTCCATTATGAGCT+AGG | 0.467563 | 3_2:-30177931 | None:intergenic |
| ATGCAAAAGGAGGAGCAACT+TGG | 0.467583 | 3_2:+30175334 | Msa0402240:CDS |
| TCCTCATGCAAGCATCGAAT+GGG | 0.467596 | 3_2:+30177992 | Msa0402240:CDS |
| GTGTCATGCCTAGCTCATAA+TGG | 0.467799 | 3_2:+30177923 | Msa0402240:CDS |
| ATCATATCTCCCCGGGAAGA+AGG | 0.467886 | 3_2:+30177154 | Msa0402240:CDS |
| GTCCACCTAGGTAAAGTAAA+GGG | 0.472023 | 3_2:+30174030 | Msa0402240:five_prime_UTR |
| GGTTCATCTTATCACAAAAT+GGG | 0.477171 | 3_2:+30177059 | Msa0402240:CDS |
| GGGCATTAGATTGGTGTCCT+AGG | 0.483270 | 3_2:+30175586 | Msa0402240:CDS |
| TCTGGAAGTTGAACAGTAAG+AGG | 0.486423 | 3_2:-30177524 | None:intergenic |
| CTCTTTGATATTAAATAGTG+TGG | 0.488495 | 3_2:-30174210 | None:intergenic |
| CTATCCACTGCTATTACAGT+TGG | 0.488965 | 3_2:-30177326 | None:intergenic |
| TCTTGTTGCAAGAAGTAGGT+TGG | 0.499166 | 3_2:+30177742 | Msa0402240:CDS |
| ATTGATTCAGTGTGAGAATG+AGG | 0.501894 | 3_2:+30177814 | Msa0402240:CDS |
| TGAATGTTGGAGGTTCTGTA+TGG | 0.503920 | 3_2:+30175565 | Msa0402240:CDS |
| ACAAATCGATAGAAATAAAG+AGG | 0.505265 | 3_2:+30177210 | Msa0402240:CDS |
| TGTCCACCTAGGTAAAGTAA+AGG | 0.506559 | 3_2:+30174029 | Msa0402240:five_prime_UTR |
| CTCATAATGGAAAGGTGGCA+TGG | 0.517043 | 3_2:+30177936 | Msa0402240:CDS |
| TATCAAACAAAGAAACCTTA+GGG | 0.521010 | 3_2:-30174355 | None:intergenic |
| TAGGTTGGATATTAATCATA+GGG | 0.524008 | 3_2:+30177757 | Msa0402240:CDS |
| AAACTCTTGTTGCAAGAAGT+AGG | 0.524383 | 3_2:+30177738 | Msa0402240:CDS |
| CTTAGGGTTAGCACCACTGC+TGG | 0.532612 | 3_2:-30174339 | None:intergenic |
| ATTGGTGTCCTAGGATGCAT+GGG | 0.532952 | 3_2:+30175595 | Msa0402240:CDS |
| TTCTTTCTAGGCCTTCCTCT+AGG | 0.533374 | 3_2:-30177233 | None:intergenic |
| TTCCTCATGCAAGCATCGAA+TGG | 0.535078 | 3_2:+30177991 | Msa0402240:CDS |
| GGGACCAAGTACATAGCATC+TGG | 0.536684 | 3_2:+30177359 | Msa0402240:CDS |
| ACTACCAGATGCTATGTACT+TGG | 0.537317 | 3_2:-30177363 | None:intergenic |
| GATTGGTGTCCTAGGATGCA+TGG | 0.541625 | 3_2:+30175594 | Msa0402240:CDS |
| CAGCAGTGGTGCTAACCCTA+AGG | 0.543146 | 3_2:+30174340 | Msa0402240:CDS |
| AAACCATACTTGGATTCTTG+AGG | 0.544459 | 3_2:-30175367 | None:intergenic |
| AGAGACTTTGTGATGAATGT+TGG | 0.551861 | 3_2:+30175552 | Msa0402240:intron |
| AAAGCTGCTGCGAATACAAA+GGG | 0.552131 | 3_2:+30177641 | Msa0402240:CDS |
| AAAGCTGCTCCGAATACAAA+GGG | 0.553544 | 3_2:+30177677 | Msa0402240:CDS |
| ATAATGGCCTACTTGTATCT+GGG | 0.555195 | 3_2:-30177793 | None:intergenic |
| CATCTGGTAGTGTCTCAAAT+GGG | 0.555891 | 3_2:+30177375 | Msa0402240:CDS |
| TTAAATGTGCAGAGAATGGA+AGG | 0.560081 | 3_2:+30175030 | Msa0402240:intron |
| GCTACAGCGGCAAATGATGA+AGG | 0.560213 | 3_2:+30174302 | Msa0402240:CDS |
| ACACCATTGCTAAACTCTGT+GGG | 0.562879 | 3_2:+30174408 | Msa0402240:CDS |
| TTCCCCACAGAGTTTAGCAA+TGG | 0.564444 | 3_2:-30174411 | None:intergenic |
| TAGAAGACACCATATTTGCA+CGG | 0.566075 | 3_2:-30177105 | None:intergenic |
| GTTGTAGCCCAGATACAAGT+AGG | 0.566508 | 3_2:+30177786 | Msa0402240:CDS |
| CGTTGTTTATCAACAGAACA+GGG | 0.567059 | 3_2:+30174081 | Msa0402240:five_prime_UTR |
| GACTTTGTGATGAATGTTGG+AGG | 0.568156 | 3_2:+30175555 | Msa0402240:CDS |
| GAAAGCTGCTCCGAATACAA+AGG | 0.568270 | 3_2:+30177676 | Msa0402240:CDS |
| TGCTGATGATTCTGCTACAG+CGG | 0.574927 | 3_2:+30174289 | Msa0402240:CDS |
| AAATAAAGAGGCCTAGAGGA+AGG | 0.580422 | 3_2:+30177222 | Msa0402240:CDS |
| TGCCCTTTACTTTACCTAGG+TGG | 0.580871 | 3_2:-30174032 | None:intergenic |
| TGATGTTCATCAGAACTGCC+AGG | 0.583511 | 3_2:-30177578 | None:intergenic |
| GGTGCCTCACTTACTGGCAG+AGG | 0.584837 | 3_2:+30177080 | Msa0402240:CDS |
| TCATAATGGAAAGGTGGCAT+GGG | 0.586605 | 3_2:+30177937 | Msa0402240:CDS |
| AAGAAGTATCATATCTCCCC+GGG | 0.588430 | 3_2:+30177147 | Msa0402240:CDS |
| GAATCCAACTGTAATAGCAG+TGG | 0.589763 | 3_2:+30177322 | Msa0402240:CDS |
| GAAAGCTGCTGCGAATACAA+AGG | 0.590265 | 3_2:+30177640 | Msa0402240:CDS |
| CAGTGGATAGTACAAATTGT+GGG | 0.590541 | 3_2:+30177339 | Msa0402240:CDS |
| ATGGTGTCTTCTAAATATCA+GGG | 0.592032 | 3_2:+30177115 | Msa0402240:CDS |
| ATGCTTGAGGTTCCAATACA+GGG | 0.598484 | 3_2:-30177859 | None:intergenic |
| TTATTTGAAATTGTCCACCT+AGG | 0.601577 | 3_2:+30174018 | Msa0402240:five_prime_UTR |
| GCAAATGATGAAGGTGGTGG+TGG | 0.602662 | 3_2:+30174311 | Msa0402240:CDS |
| TCAGCATAATATGCAAAAGG+AGG | 0.605517 | 3_2:+30175324 | Msa0402240:intron |
| AAACAAGAGAGTAATGGAAG+AGG | 0.607256 | 3_2:+30174166 | Msa0402240:exon |
| GAAGAAGTATCATATCTCCC+CGG | 0.607569 | 3_2:+30177146 | Msa0402240:CDS |
| AAATGCCCTTTACTTTACCT+AGG | 0.608444 | 3_2:-30174035 | None:intergenic |
| GGCACCTCTGCCAGTAAGTG+AGG | 0.611285 | 3_2:-30177084 | None:intergenic |
| GACACCATTGCTAAACTCTG+TGG | 0.614594 | 3_2:+30174407 | Msa0402240:CDS |
| GAGGAATCAAGATTGCTAAG+AGG | 0.614969 | 3_2:-30177974 | None:intergenic |
| AATTGCAAACAAGAGAGTAA+TGG | 0.617423 | 3_2:+30174160 | Msa0402240:exon |
| CCTAGCTCATAATGGAAAGG+TGG | 0.620737 | 3_2:+30177931 | Msa0402240:CDS |
| CAGAACTGATATTCAAACCC+TGG | 0.624538 | 3_2:-30174115 | None:intergenic |
| GCAGTGGATAGTACAAATTG+TGG | 0.626003 | 3_2:+30177338 | Msa0402240:CDS |
| ATGCCTAGCTCATAATGGAA+AGG | 0.628963 | 3_2:+30177928 | Msa0402240:CDS |
| TGATTGTTCAATTAAATGTG+AGG | 0.630368 | 3_2:+30175623 | Msa0402240:CDS |
| GCCCATTCGATGCTTGCATG+AGG | 0.635290 | 3_2:-30177993 | None:intergenic |
| GCTAGGCATGACACAACTCT+AGG | 0.640886 | 3_2:-30177914 | None:intergenic |
| GAATGTTGGAGGTTCTGTAT+GGG | 0.641333 | 3_2:+30175566 | Msa0402240:CDS |
| ATGGGACAAGTAGATGCTTG+AGG | 0.647867 | 3_2:-30177872 | None:intergenic |
| GCAAAAGGAGGAGCAACTTG+GGG | 0.648508 | 3_2:+30175336 | Msa0402240:CDS |
| ATAGAAATAAAGAGGCCTAG+AGG | 0.655432 | 3_2:+30177218 | Msa0402240:CDS |
| GCGGCAAATGATGAAGGTGG+TGG | 0.666480 | 3_2:+30174308 | Msa0402240:CDS |
| CACCATTGCTAAACTCTGTG+GGG | 0.668610 | 3_2:+30174409 | Msa0402240:CDS |
| GGTGGTGGTAGTACCAGCAG+TGG | 0.670189 | 3_2:+30174326 | Msa0402240:CDS |
| TGGCATGGGATGTCAAATGG+AGG | 0.678240 | 3_2:+30177951 | Msa0402240:CDS |
| GACTTGTACCTTAGGAACAG+TGG | 0.679559 | 3_2:-30175164 | None:intergenic |
| TCCAATACAGGGCTACCATG+TGG | 0.685481 | 3_2:-30177848 | None:intergenic |
| GAGGCAAATCATCAACCACA+TGG | 0.705993 | 3_2:+30177833 | Msa0402240:CDS |
| TTGGTGTCCTAGGATGCATG+GGG | 0.719461 | 3_2:+30175596 | Msa0402240:CDS |
| TTGTGATAAGATGAACCAGG+CGG | 0.737973 | 3_2:-30177053 | None:intergenic |
| ACAGCGGCAAATGATGAAGG+TGG | 0.745146 | 3_2:+30174305 | Msa0402240:CDS |
| ACAGTGGCAGATGAAAACTG+AGG | 0.800494 | 3_2:-30175148 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATTAGAGTAAAATAT+AGG | - | chr3_2:30175192-30175211 | None:intergenic | 10.0% |
| !!! | TAAGTATATATTTTGCTTTT+AGG | + | chr3_2:30175241-30175260 | Msa0402240:intron | 15.0% |
| !! | TAAAAGGATTTAGATTTAAA+TGG | + | chr3_2:30176327-30176346 | Msa0402240:intron | 15.0% |
| !! | TTTACTACATATATGAATAT+AGG | - | chr3_2:30176912-30176931 | None:intergenic | 15.0% |
| !! | TCTTCAAGTAAATATTTGAT+TGG | - | chr3_2:30174842-30174861 | None:intergenic | 20.0% |
| !! | AATCAAATATTTACTTGAAG+AGG | + | chr3_2:30174841-30174860 | Msa0402240:intron | 20.0% |
| !! | ATCAAATATTTACTTGAAGA+GGG | + | chr3_2:30174842-30174861 | Msa0402240:intron | 20.0% |
| !! | AACCAAAAAAAGAAATTAAG+GGG | - | chr3_2:30175005-30175024 | None:intergenic | 20.0% |
| !! | CAACCAAAAAAAGAAATTAA+GGG | - | chr3_2:30175006-30175025 | None:intergenic | 20.0% |
| !! | TCAACCAAAAAAAGAAATTA+AGG | - | chr3_2:30175007-30175026 | None:intergenic | 20.0% |
| !! | AAATTAGAGTAAAATATAGG+AGG | - | chr3_2:30175189-30175208 | None:intergenic | 20.0% |
| !! | TTTATTCAATGACATTTCTA+TGG | + | chr3_2:30175413-30175432 | Msa0402240:intron | 20.0% |
| !!! | ATATTGTTTTGTTACTTCTT+TGG | + | chr3_2:30175701-30175720 | Msa0402240:intron | 20.0% |
| !!! | TATTGTTTTGTTACTTCTTT+GGG | + | chr3_2:30175702-30175721 | Msa0402240:intron | 20.0% |
| !!! | AGATTTTATTTGAAGTTTGA+TGG | + | chr3_2:30175806-30175825 | Msa0402240:intron | 20.0% |
| !!! | TATTGTTCTTTTAAGAGTTA+AGG | + | chr3_2:30175865-30175884 | Msa0402240:intron | 20.0% |
| !!! | ATTGTTCTTTTAAGAGTTAA+GGG | + | chr3_2:30175866-30175885 | Msa0402240:intron | 20.0% |
| !! | TTCTTAAATTGTGTTGAATT+TGG | - | chr3_2:30176024-30176043 | None:intergenic | 20.0% |
| !!! | TCAACACAATTTAAGAATTT+TGG | + | chr3_2:30176027-30176046 | Msa0402240:intron | 20.0% |
| !!! | TTTCATTGTTATTTGTTTCA+TGG | - | chr3_2:30176055-30176074 | None:intergenic | 20.0% |
| !!! | AGCACATATTTTTGAAAAAA+TGG | + | chr3_2:30176230-30176249 | Msa0402240:intron | 20.0% |
| !!! | TTTTATTCCAAACTGTTAAA+AGG | + | chr3_2:30176311-30176330 | Msa0402240:intron | 20.0% |
| !! | CATAATTAACAAAAGGATTT+AGG | - | chr3_2:30176739-30176758 | None:intergenic | 20.0% |
| !!! | AATCCTTTTGTTAATTATGA+TGG | + | chr3_2:30176740-30176759 | Msa0402240:intron | 20.0% |
| !! | TATCAAAATAGGTATATGTA+TGG | - | chr3_2:30176855-30176874 | None:intergenic | 20.0% |
| !! | TTACATACAAGAGTAAAAAA+AGG | + | chr3_2:30177429-30177448 | Msa0402240:CDS | 20.0% |
| !!! | ACAACAATTTTCTAATACAA+AGG | + | chr3_2:30177604-30177623 | Msa0402240:CDS | 20.0% |
| !!! | CAACAATTTTCTAATACAAA+GGG | + | chr3_2:30177605-30177624 | Msa0402240:CDS | 20.0% |
| ! | CTCTTTGATATTAAATAGTG+TGG | - | chr3_2:30174213-30174232 | None:intergenic | 25.0% |
| ! | TATCAAACAAAGAAACCTTA+GGG | - | chr3_2:30174358-30174377 | None:intergenic | 25.0% |
| ! | ATATCAAACAAAGAAACCTT+AGG | - | chr3_2:30174359-30174378 | None:intergenic | 25.0% |
| ! | ATCATACCTTAAAAAAGTGA+CGG | - | chr3_2:30174489-30174508 | None:intergenic | 25.0% |
| ! | ATAATCATTGAATGACTAAG+TGG | + | chr3_2:30174797-30174816 | Msa0402240:intron | 25.0% |
| !!! | AACCCCTTAATTTCTTTTTT+TGG | + | chr3_2:30175000-30175019 | Msa0402240:intron | 25.0% |
| !!! | AATATCCATCTAAAAGCATT+AGG | + | chr3_2:30175059-30175078 | Msa0402240:CDS | 25.0% |
| !!! | AAAAGCATTAGGTTTACTTA+CGG | + | chr3_2:30175070-30175089 | Msa0402240:CDS | 25.0% |
| !! | TTTTCAGCATAATATGCAAA+AGG | + | chr3_2:30175321-30175340 | Msa0402240:intron | 25.0% |
| ! | AGTTAATATCAAACCATACT+TGG | - | chr3_2:30175380-30175399 | None:intergenic | 25.0% |
| !!! | GATATTAACTTATTTTGTCG+TGG | + | chr3_2:30175390-30175409 | Msa0402240:intron | 25.0% |
| ! | TCACATTTAATTGAACAATC+AGG | - | chr3_2:30175624-30175643 | None:intergenic | 25.0% |
| ! | TGATTGTTCAATTAAATGTG+AGG | + | chr3_2:30175623-30175642 | Msa0402240:CDS | 25.0% |
| !! | TCTAAATCCTTTTAACAGTT+TGG | - | chr3_2:30176321-30176340 | None:intergenic | 25.0% |
| ! | TTTATCACTAGAAATGATCT+AGG | + | chr3_2:30176350-30176369 | Msa0402240:intron | 25.0% |
| ! | CTAAATAGTATACACAATTG+CGG | + | chr3_2:30176487-30176506 | Msa0402240:intron | 25.0% |
| ! | AAAAAAAGTGAACGACAAAA+AGG | - | chr3_2:30176588-30176607 | None:intergenic | 25.0% |
| ! | TCTCCATCATAATTAACAAA+AGG | - | chr3_2:30176746-30176765 | None:intergenic | 25.0% |
| !!! | TACCTATTTTGATAGTTTTG+TGG | + | chr3_2:30176861-30176880 | Msa0402240:intron | 25.0% |
| ! | ACAAATCGATAGAAATAAAG+AGG | + | chr3_2:30177210-30177229 | Msa0402240:CDS | 25.0% |
| !!! | CTTTTTCTCTTGTTTGTAAT+AGG | - | chr3_2:30177287-30177306 | None:intergenic | 25.0% |
| ! | ATTACAAACAAGAGAAAAAG+AGG | + | chr3_2:30177287-30177306 | Msa0402240:CDS | 25.0% |
| !!! | ATTACAGTTGGATTCTTTTT+TGG | - | chr3_2:30177317-30177336 | None:intergenic | 25.0% |
| !! | CCATCTTTTGAATTCTTTTT+CGG | - | chr3_2:30177467-30177486 | None:intergenic | 25.0% |
| !! | TAGGTTGGATATTAATCATA+GGG | + | chr3_2:30177757-30177776 | Msa0402240:CDS | 25.0% |
| ! | TTATTTGAAATTGTCCACCT+AGG | + | chr3_2:30174018-30174037 | Msa0402240:five_prime_UTR | 30.0% |
| AATTGCAAACAAGAGAGTAA+TGG | + | chr3_2:30174160-30174179 | Msa0402240:exon | 30.0% | |
| TAAATAGTGTGGCAAAAGTT+AGG | - | chr3_2:30174202-30174221 | None:intergenic | 30.0% | |
| GAAAAAGAAGAAAAAGACGA+AGG | + | chr3_2:30174244-30174263 | Msa0402240:CDS | 30.0% | |
| !!! | TTTCTTCCGTCACTTTTTTA+AGG | + | chr3_2:30174480-30174499 | Msa0402240:CDS | 30.0% |
| GTTAATCTGTTGTGAAGAAA+TGG | + | chr3_2:30174552-30174571 | Msa0402240:intron | 30.0% | |
| TTATAACCAACTCAAAGAGT+TGG | - | chr3_2:30174716-30174735 | None:intergenic | 30.0% | |
| !! | AACTCTTTGAGTTGGTTATA+AGG | + | chr3_2:30174715-30174734 | Msa0402240:intron | 30.0% |
| GATTGGATAGACATAATTGT+AGG | - | chr3_2:30174825-30174844 | None:intergenic | 30.0% | |
| AATATTTACTTGAAGAGGGA+AGG | + | chr3_2:30174846-30174865 | Msa0402240:intron | 30.0% | |
| ATATTTACTTGAAGAGGGAA+GGG | + | chr3_2:30174847-30174866 | Msa0402240:intron | 30.0% | |
| AAAGAAATTAAGGGGTTGTT+TGG | - | chr3_2:30174997-30175016 | None:intergenic | 30.0% | |
| ! | GTAAACCTAATGCTTTTAGA+TGG | - | chr3_2:30175067-30175086 | None:intergenic | 30.0% |
| ATTAGGTTTACTTACGGAAT+TGG | + | chr3_2:30175076-30175095 | Msa0402240:CDS | 30.0% | |
| TTAGGTTTACTTACGGAATT+GGG | + | chr3_2:30175077-30175096 | Msa0402240:CDS | 30.0% | |
| CTCTAATTTAATTGTTTGCC+AGG | + | chr3_2:30175200-30175219 | Msa0402240:intron | 30.0% | |
| ATATACTATAACTTCATGCC+TGG | - | chr3_2:30175221-30175240 | None:intergenic | 30.0% | |
| ! | TCGCTGATTATTGTTTAACT+TGG | + | chr3_2:30175510-30175529 | Msa0402240:intron | 30.0% |
| !! | AGTCAATTCTGTCTTTTTCA+TGG | + | chr3_2:30175755-30175774 | Msa0402240:intron | 30.0% |
| !! | TTATTTGAAGTTTGATGGTG+AGG | + | chr3_2:30175811-30175830 | Msa0402240:intron | 30.0% |
| TAGCAGTAAAACATAGTGTA+CGG | + | chr3_2:30175934-30175953 | Msa0402240:intron | 30.0% | |
| TACGGCATATATTATAAGCA+AGG | + | chr3_2:30175952-30175971 | Msa0402240:intron | 30.0% | |
| ACGGCATATATTATAAGCAA+GGG | + | chr3_2:30175953-30175972 | Msa0402240:intron | 30.0% | |
| ACATAATTGTAGAATAGAGG+TGG | + | chr3_2:30175978-30175997 | Msa0402240:intron | 30.0% | |
| ATTAACCTAAAGGATTCAAG+TGG | + | chr3_2:30176084-30176103 | Msa0402240:intron | 30.0% | |
| TTAACCTAAAGGATTCAAGT+GGG | + | chr3_2:30176085-30176104 | Msa0402240:intron | 30.0% | |
| AATGCGTTAAAGAGAAAGTT+TGG | + | chr3_2:30176205-30176224 | Msa0402240:intron | 30.0% | |
| ATGCGTTAAAGAGAAAGTTT+GGG | + | chr3_2:30176206-30176225 | Msa0402240:intron | 30.0% | |
| AATAGGTATATGTATGGAGT+AGG | - | chr3_2:30176849-30176868 | None:intergenic | 30.0% | |
| GACCACAAAACTATCAAAAT+AGG | - | chr3_2:30176866-30176885 | None:intergenic | 30.0% | |
| TAAACCAAGTATCAGAAAGA+AGG | - | chr3_2:30177011-30177030 | None:intergenic | 30.0% | |
| ! | ATTTTGTGATAAGATGAACC+AGG | - | chr3_2:30177059-30177078 | None:intergenic | 30.0% |
| TGGTTCATCTTATCACAAAA+TGG | + | chr3_2:30177058-30177077 | Msa0402240:CDS | 30.0% | |
| GGTTCATCTTATCACAAAAT+GGG | + | chr3_2:30177059-30177078 | Msa0402240:CDS | 30.0% | |
| TATGGTGTCTTCTAAATATC+AGG | + | chr3_2:30177114-30177133 | Msa0402240:CDS | 30.0% | |
| ATGGTGTCTTCTAAATATCA+GGG | + | chr3_2:30177115-30177134 | Msa0402240:CDS | 30.0% | |
| ! | TTTTCAGTAGGATTCTTTCT+AGG | - | chr3_2:30177248-30177267 | None:intergenic | 30.0% |
| AAGAGTAAAAAAAGGCCTAA+AGG | + | chr3_2:30177437-30177456 | Msa0402240:CDS | 30.0% | |
| CCGAAAAAGAATTCAAAAGA+TGG | + | chr3_2:30177464-30177483 | Msa0402240:CDS | 30.0% | |
| ! | ACAAATTGGTTCTCACAATT+TGG | - | chr3_2:30177503-30177522 | None:intergenic | 30.0% |
| GAAATAAATTCAGCTGAATC+TGG | - | chr3_2:30177545-30177564 | None:intergenic | 30.0% | |
| ! | GTAGGTTGGATATTAATCAT+AGG | + | chr3_2:30177756-30177775 | Msa0402240:CDS | 30.0% |
| TTCTCACACTGAATCAATAA+TGG | - | chr3_2:30177812-30177831 | None:intergenic | 30.0% | |
| ! | AATGCTACATTTTGTGGAAT+GGG | - | chr3_2:30177893-30177912 | None:intergenic | 30.0% |
| AAATGCCCTTTACTTTACCT+AGG | - | chr3_2:30174038-30174057 | None:intergenic | 35.0% | |
| GGCATTTACCTTTCACAAAA+GGG | + | chr3_2:30174051-30174070 | Msa0402240:five_prime_UTR | 35.0% | |
| ACCTTTCACAAAAGGGATTA+AGG | + | chr3_2:30174058-30174077 | Msa0402240:five_prime_UTR | 35.0% | |
| CGTTGTTTATCAACAGAACA+GGG | + | chr3_2:30174081-30174100 | Msa0402240:five_prime_UTR | 35.0% | |
| AGGGTTTGAATATCAGTTCT+GGG | + | chr3_2:30174117-30174136 | Msa0402240:five_prime_UTR | 35.0% | |
| ! | AAACAAGAGAGTAATGGAAG+AGG | + | chr3_2:30174166-30174185 | Msa0402240:exon | 35.0% |
| ! | CGAGAATTTCTTTGAAGACA+TGG | + | chr3_2:30174385-30174404 | Msa0402240:CDS | 35.0% |
| TGTTCTTGAGCAATACGATT+TGG | + | chr3_2:30174586-30174605 | Msa0402240:intron | 35.0% | |
| ! | AGAGTTGGTTAGGATTGATT+AGG | - | chr3_2:30174701-30174720 | None:intergenic | 35.0% |
| TATGAACCGAATCTCTAAGT+TGG | + | chr3_2:30174914-30174933 | Msa0402240:intron | 35.0% | |
| ATGAACCGAATCTCTAAGTT+GGG | + | chr3_2:30174915-30174934 | Msa0402240:intron | 35.0% | |
| ACCATTAAATGTGCAGAGAA+TGG | + | chr3_2:30175026-30175045 | Msa0402240:intron | 35.0% | |
| TCCATTCTCTGCACATTTAA+TGG | - | chr3_2:30175030-30175049 | None:intergenic | 35.0% | |
| TTAAATGTGCAGAGAATGGA+AGG | + | chr3_2:30175030-30175049 | Msa0402240:intron | 35.0% | |
| TCAGCATAATATGCAAAAGG+AGG | + | chr3_2:30175324-30175343 | Msa0402240:intron | 35.0% | |
| ATACTTGGATTCTTGAGGTT+TGG | - | chr3_2:30175365-30175384 | None:intergenic | 35.0% | |
| AAACCTCAAGAATCCAAGTA+TGG | + | chr3_2:30175364-30175383 | Msa0402240:intron | 35.0% | |
| AAACCATACTTGGATTCTTG+AGG | - | chr3_2:30175370-30175389 | None:intergenic | 35.0% | |
| AACTTGGCTAAACACTTTGT+TGG | + | chr3_2:30175526-30175545 | Msa0402240:intron | 35.0% | |
| AGAGACTTTGTGATGAATGT+TGG | + | chr3_2:30175552-30175571 | Msa0402240:intron | 35.0% | |
| TGTGATGTTTCATACGTTGA+GGG | + | chr3_2:30175783-30175802 | Msa0402240:intron | 35.0% | |
| CTCTTAAAAGAACAATACGC+TGG | - | chr3_2:30175862-30175881 | None:intergenic | 35.0% | |
| CGGCATATATTATAAGCAAG+GGG | + | chr3_2:30175954-30175973 | Msa0402240:intron | 35.0% | |
| GGCACATAATTGTAGAATAG+AGG | + | chr3_2:30175975-30175994 | Msa0402240:intron | 35.0% | |
| GTGTTGAATTTGGTATGCTA+TGG | - | chr3_2:30176014-30176033 | None:intergenic | 35.0% | |
| ACAGAGCGAAATTAACCTAA+AGG | + | chr3_2:30176074-30176093 | Msa0402240:intron | 35.0% | |
| ! | GTAATTTTCGATCACAAAGC+AGG | - | chr3_2:30176132-30176151 | None:intergenic | 35.0% |
| AAATGGAAAAACACTGCCTT+AGG | + | chr3_2:30176247-30176266 | Msa0402240:intron | 35.0% | |
| GATATAGTACTATTGCTGAG+AGG | - | chr3_2:30176434-30176453 | None:intergenic | 35.0% | |
| CTATCAAATAGCGACTATAG+TGG | - | chr3_2:30176458-30176477 | None:intergenic | 35.0% | |
| GACATTTGGCATACAGAAAA+TGG | - | chr3_2:30176656-30176675 | None:intergenic | 35.0% | |
| ! | GTTAATTATGATGGAGACAC+TGG | + | chr3_2:30176749-30176768 | Msa0402240:intron | 35.0% |
| TTATTTCCTACTTCCAAGTC+TGG | - | chr3_2:30176955-30176974 | None:intergenic | 35.0% | |
| ATGACCTTCTTTCTGATACT+TGG | + | chr3_2:30177004-30177023 | Msa0402240:intron | 35.0% | |
| TAGAAGACACCATATTTGCA+CGG | - | chr3_2:30177108-30177127 | None:intergenic | 35.0% | |
| !!! | AGGTTTTTTTTCCTTCTTCC+CGG | - | chr3_2:30177168-30177187 | None:intergenic | 35.0% |
| !!! | TTTGTGCACGTGTCTTTTTT+AGG | - | chr3_2:30177188-30177207 | None:intergenic | 35.0% |
| ATAGAAATAAAGAGGCCTAG+AGG | + | chr3_2:30177218-30177237 | Msa0402240:CDS | 35.0% | |
| !! | ATTGCTTCGTTGTTTTCAGT+AGG | - | chr3_2:30177260-30177279 | None:intergenic | 35.0% |
| CAGTGGATAGTACAAATTGT+GGG | + | chr3_2:30177339-30177358 | Msa0402240:CDS | 35.0% | |
| !!! | TTCTTTTTCGGTCTTCCTTT+AGG | - | chr3_2:30177455-30177474 | None:intergenic | 35.0% |
| GAACAGTAAGAGGAACAAAT+TGG | - | chr3_2:30177517-30177536 | None:intergenic | 35.0% | |
| GCATTCTTTCCCTTTGTATT+CGG | - | chr3_2:30177617-30177636 | None:intergenic | 35.0% | |
| AAACTCTTGTTGCAAGAAGT+AGG | + | chr3_2:30177738-30177757 | Msa0402240:CDS | 35.0% | |
| ATAATGGCCTACTTGTATCT+GGG | - | chr3_2:30177796-30177815 | None:intergenic | 35.0% | |
| AATAATGGCCTACTTGTATC+TGG | - | chr3_2:30177797-30177816 | None:intergenic | 35.0% | |
| ! | ATTGATTCAGTGTGAGAATG+AGG | + | chr3_2:30177814-30177833 | Msa0402240:CDS | 35.0% |
| ! | CAATGCTACATTTTGTGGAA+TGG | - | chr3_2:30177894-30177913 | None:intergenic | 35.0% |
| TGTCCACCTAGGTAAAGTAA+AGG | + | chr3_2:30174029-30174048 | Msa0402240:five_prime_UTR | 40.0% | |
| GTCCACCTAGGTAAAGTAAA+GGG | + | chr3_2:30174030-30174049 | Msa0402240:five_prime_UTR | 40.0% | |
| GGGCATTTACCTTTCACAAA+AGG | + | chr3_2:30174050-30174069 | Msa0402240:five_prime_UTR | 40.0% | |
| ! | GCCTTAATCCCTTTTGTGAA+AGG | - | chr3_2:30174062-30174081 | None:intergenic | 40.0% |
| GCGTTGTTTATCAACAGAAC+AGG | + | chr3_2:30174080-30174099 | Msa0402240:five_prime_UTR | 40.0% | |
| CAGAACTGATATTCAAACCC+TGG | - | chr3_2:30174118-30174137 | None:intergenic | 40.0% | |
| CAGGGTTTGAATATCAGTTC+TGG | + | chr3_2:30174116-30174135 | Msa0402240:five_prime_UTR | 40.0% | |
| ! | ACTCTCTTGTTTGCAATTGC+AGG | - | chr3_2:30174158-30174177 | None:intergenic | 40.0% |
| ACACCATTGCTAAACTCTGT+GGG | + | chr3_2:30174408-30174427 | Msa0402240:CDS | 40.0% | |
| ATGTATCAGCTATGATGCTC+TGG | + | chr3_2:30174626-30174645 | Msa0402240:intron | 40.0% | |
| TCCTAACCAACTCTTTGAGT+TGG | + | chr3_2:30174707-30174726 | Msa0402240:intron | 40.0% | |
| ! | ACCAACTCAAAGAGTTGGTT+AGG | - | chr3_2:30174711-30174730 | None:intergenic | 40.0% |
| AGGCAGTGCTAATCTATGTA+AGG | + | chr3_2:30174735-30174754 | Msa0402240:intron | 40.0% | |
| CGAAACCCAACTTAGAGATT+CGG | - | chr3_2:30174923-30174942 | None:intergenic | 40.0% | |
| TATAGGAGGACTTGTACCTT+AGG | - | chr3_2:30175175-30175194 | None:intergenic | 40.0% | |
| GACTTTGTGATGAATGTTGG+AGG | + | chr3_2:30175555-30175574 | Msa0402240:CDS | 40.0% | |
| TGAATGTTGGAGGTTCTGTA+TGG | + | chr3_2:30175565-30175584 | Msa0402240:CDS | 40.0% | |
| GAATGTTGGAGGTTCTGTAT+GGG | + | chr3_2:30175566-30175585 | Msa0402240:CDS | 40.0% | |
| GTTCTGTATGGGCATTAGAT+TGG | + | chr3_2:30175577-30175596 | Msa0402240:CDS | 40.0% | |
| GTGTGATGTTTCATACGTTG+AGG | + | chr3_2:30175782-30175801 | Msa0402240:intron | 40.0% | |
| !! | TGAAGTTTGATGGTGAGGTA+AGG | + | chr3_2:30175816-30175835 | Msa0402240:intron | 40.0% |
| !! | GAAGTTTGATGGTGAGGTAA+GGG | + | chr3_2:30175817-30175836 | Msa0402240:intron | 40.0% |
| !! | AAGTTTGATGGTGAGGTAAG+GGG | + | chr3_2:30175818-30175837 | Msa0402240:intron | 40.0% |
| GCTACTTCTACTCACACATT+CGG | - | chr3_2:30175918-30175937 | None:intergenic | 40.0% | |
| ATACATGTCCAAACCACCTA+AGG | - | chr3_2:30176266-30176285 | None:intergenic | 40.0% | |
| ! | TGGTTTGGACATGTATTGAG+AGG | + | chr3_2:30176270-30176289 | Msa0402240:intron | 40.0% |
| GTGTTGTCAATCTCAGATAG+TGG | + | chr3_2:30176396-30176415 | Msa0402240:intron | 40.0% | |
| ! | CACTATAACGTGGTGGAATT+TGG | - | chr3_2:30176518-30176537 | None:intergenic | 40.0% |
| CAAATTCCACCACGTTATAG+TGG | + | chr3_2:30176516-30176535 | Msa0402240:intron | 40.0% | |
| GATGCTATACCACTATAACG+TGG | - | chr3_2:30176528-30176547 | None:intergenic | 40.0% | |
| AAGGAATTACCCACATCACA+GGG | - | chr3_2:30176569-30176588 | None:intergenic | 40.0% | |
| AAAGGAATTACCCACATCAC+AGG | - | chr3_2:30176570-30176589 | None:intergenic | 40.0% | |
| TTGGCATACAGAAAATGGTG+AGG | - | chr3_2:30176651-30176670 | None:intergenic | 40.0% | |
| ! | CATGGTGTCAACTAGCTATT+AGG | - | chr3_2:30176696-30176715 | None:intergenic | 40.0% |
| CACCATGTTAAATTACCACC+TGG | + | chr3_2:30176709-30176728 | Msa0402240:intron | 40.0% | |
| AGCCAGGTGGTAATTTAACA+TGG | - | chr3_2:30176714-30176733 | None:intergenic | 40.0% | |
| CAAAAGGATTTAGGTAAGCC+AGG | - | chr3_2:30176730-30176749 | None:intergenic | 40.0% | |
| ACTTACCTTTGTTCCAGACT+TGG | + | chr3_2:30176939-30176958 | Msa0402240:intron | 40.0% | |
| ! | TACTTCCAAGTCTGGAACAA+AGG | - | chr3_2:30176947-30176966 | None:intergenic | 40.0% |
| TTTGTTCCAGACTTGGAAGT+AGG | + | chr3_2:30176946-30176965 | Msa0402240:intron | 40.0% | |
| TTGTGATAAGATGAACCAGG+CGG | - | chr3_2:30177056-30177075 | None:intergenic | 40.0% | |
| !! | GAAGAAGTATCATATCTCCC+CGG | + | chr3_2:30177146-30177165 | Msa0402240:CDS | 40.0% |
| !! | AAGAAGTATCATATCTCCCC+GGG | + | chr3_2:30177147-30177166 | Msa0402240:CDS | 40.0% |
| !!! | GTTTTTTTTCCTTCTTCCCG+GGG | - | chr3_2:30177166-30177185 | None:intergenic | 40.0% |
| !!! | GGTTTTTTTTCCTTCTTCCC+GGG | - | chr3_2:30177167-30177186 | None:intergenic | 40.0% |
| AAATAAAGAGGCCTAGAGGA+AGG | + | chr3_2:30177222-30177241 | Msa0402240:CDS | 40.0% | |
| GAATCCAACTGTAATAGCAG+TGG | + | chr3_2:30177322-30177341 | Msa0402240:CDS | 40.0% | |
| CTATCCACTGCTATTACAGT+TGG | - | chr3_2:30177329-30177348 | None:intergenic | 40.0% | |
| GCAGTGGATAGTACAAATTG+TGG | + | chr3_2:30177338-30177357 | Msa0402240:CDS | 40.0% | |
| ACTACCAGATGCTATGTACT+TGG | - | chr3_2:30177366-30177385 | None:intergenic | 40.0% | |
| ! | CATCTGGTAGTGTCTCAAAT+GGG | + | chr3_2:30177375-30177394 | Msa0402240:CDS | 40.0% |
| TCTGGAAGTTGAACAGTAAG+AGG | - | chr3_2:30177527-30177546 | None:intergenic | 40.0% | |
| ATTTCTCCAGATGTAGTTCC+TGG | + | chr3_2:30177560-30177579 | Msa0402240:CDS | 40.0% | |
| AAAGCTGCTGCGAATACAAA+GGG | + | chr3_2:30177641-30177660 | Msa0402240:CDS | 40.0% | |
| AAAGCTGCTCCGAATACAAA+GGG | + | chr3_2:30177677-30177696 | Msa0402240:CDS | 40.0% | |
| TCTTGTTGCAAGAAGTAGGT+TGG | + | chr3_2:30177742-30177761 | Msa0402240:CDS | 40.0% | |
| ATGCTTGAGGTTCCAATACA+GGG | - | chr3_2:30177862-30177881 | None:intergenic | 40.0% | |
| ! | CTAGGCAATGCTACATTTTG+TGG | - | chr3_2:30177899-30177918 | None:intergenic | 40.0% |
| ! | ATGCCTAGCTCATAATGGAA+AGG | + | chr3_2:30177928-30177947 | Msa0402240:CDS | 40.0% |
| ! | TCATAATGGAAAGGTGGCAT+GGG | + | chr3_2:30177937-30177956 | Msa0402240:CDS | 40.0% |
| GAGGAATCAAGATTGCTAAG+AGG | - | chr3_2:30177977-30177996 | None:intergenic | 40.0% | |
| TGCCCTTTACTTTACCTAGG+TGG | - | chr3_2:30174035-30174054 | None:intergenic | 45.0% | |
| !!! | AACAGGGTTTTAGCTTGTCC+AGG | + | chr3_2:30174097-30174116 | Msa0402240:five_prime_UTR | 45.0% |
| !!! | ACAGGGTTTTAGCTTGTCCA+GGG | + | chr3_2:30174098-30174117 | Msa0402240:five_prime_UTR | 45.0% |
| TGCTGATGATTCTGCTACAG+CGG | + | chr3_2:30174289-30174308 | Msa0402240:CDS | 45.0% | |
| GACACCATTGCTAAACTCTG+TGG | + | chr3_2:30174407-30174426 | Msa0402240:CDS | 45.0% | |
| CACCATTGCTAAACTCTGTG+GGG | + | chr3_2:30174409-30174428 | Msa0402240:CDS | 45.0% | |
| TTCCCCACAGAGTTTAGCAA+TGG | - | chr3_2:30174414-30174433 | None:intergenic | 45.0% | |
| GGCGATAGTGATACAAACTG+AGG | - | chr3_2:30174680-30174699 | None:intergenic | 45.0% | |
| TTGAAGAGGGAAGGGAAAGT+TGG | + | chr3_2:30174855-30174874 | Msa0402240:intron | 45.0% | |
| ACAGTGGCAGATGAAAACTG+AGG | - | chr3_2:30175151-30175170 | None:intergenic | 45.0% | |
| TTCATCTGCCACTGTTCCTA+AGG | + | chr3_2:30175156-30175175 | Msa0402240:CDS | 45.0% | |
| GACTTGTACCTTAGGAACAG+TGG | - | chr3_2:30175167-30175186 | None:intergenic | 45.0% | |
| ATGCAAAAGGAGGAGCAACT+TGG | + | chr3_2:30175334-30175353 | Msa0402240:CDS | 45.0% | |
| TGCAAAAGGAGGAGCAACTT+GGG | + | chr3_2:30175335-30175354 | Msa0402240:CDS | 45.0% | |
| ! | ATTGGTGTCCTAGGATGCAT+GGG | + | chr3_2:30175595-30175614 | Msa0402240:CDS | 45.0% |
| ! | GGTAAGGGGCACATAGTATA+TGG | + | chr3_2:30175832-30175851 | Msa0402240:intron | 45.0% |
| CTCACCCACTTGAATCCTTT+AGG | - | chr3_2:30176092-30176111 | None:intergenic | 45.0% | |
| TTCAAGTGGGTGAGATGCAA+AGG | + | chr3_2:30176098-30176117 | Msa0402240:intron | 45.0% | |
| TCAAGTGGGTGAGATGCAAA+GGG | + | chr3_2:30176099-30176118 | Msa0402240:intron | 45.0% | |
| TGGAAAAACACTGCCTTAGG+TGG | + | chr3_2:30176250-30176269 | Msa0402240:intron | 45.0% | |
| AAACACTGCCTTAGGTGGTT+TGG | + | chr3_2:30176255-30176274 | Msa0402240:intron | 45.0% | |
| GCTATACCACTATAACGTGG+TGG | - | chr3_2:30176525-30176544 | None:intergenic | 45.0% | |
| TGCTATTATCCCCTGTGATG+TGG | + | chr3_2:30176556-30176575 | Msa0402240:intron | 45.0% | |
| GCTATTATCCCCTGTGATGT+GGG | + | chr3_2:30176557-30176576 | Msa0402240:intron | 45.0% | |
| AGGAATTACCCACATCACAG+GGG | - | chr3_2:30176568-30176587 | None:intergenic | 45.0% | |
| ATGCCAAATGTCAGATGCCA+TGG | + | chr3_2:30176664-30176683 | Msa0402240:intron | 45.0% | |
| AGTCCATGGCATCTGACATT+TGG | - | chr3_2:30176670-30176689 | None:intergenic | 45.0% | |
| AATGTCAGATGCCATGGACT+CGG | + | chr3_2:30176670-30176689 | Msa0402240:intron | 45.0% | |
| AAGGATTTAGGTAAGCCAGG+TGG | - | chr3_2:30176727-30176746 | None:intergenic | 45.0% | |
| AAAATGGGTGCCTCACTTAC+TGG | + | chr3_2:30177074-30177093 | Msa0402240:CDS | 45.0% | |
| TTCTTTCTAGGCCTTCCTCT+AGG | - | chr3_2:30177236-30177255 | None:intergenic | 45.0% | |
| ! | GCATCTGGTAGTGTCTCAAA+TGG | + | chr3_2:30177374-30177393 | Msa0402240:CDS | 45.0% |
| TGATGTTCATCAGAACTGCC+AGG | - | chr3_2:30177581-30177600 | None:intergenic | 45.0% | |
| TGTATTCGCAGCAGCTTTCT+TGG | - | chr3_2:30177639-30177658 | None:intergenic | 45.0% | |
| GAAAGCTGCTGCGAATACAA+AGG | + | chr3_2:30177640-30177659 | Msa0402240:CDS | 45.0% | |
| GAAAGCTGCTCCGAATACAA+AGG | + | chr3_2:30177676-30177695 | Msa0402240:CDS | 45.0% | |
| GTATGCAGAAGCAGCTTTCT+TGG | - | chr3_2:30177711-30177730 | None:intergenic | 45.0% | |
| GTTGTAGCCCAGATACAAGT+AGG | + | chr3_2:30177786-30177805 | Msa0402240:CDS | 45.0% | |
| GAGGCAAATCATCAACCACA+TGG | + | chr3_2:30177833-30177852 | Msa0402240:CDS | 45.0% | |
| GATGCTTGAGGTTCCAATAC+AGG | - | chr3_2:30177863-30177882 | None:intergenic | 45.0% | |
| ATGGGACAAGTAGATGCTTG+AGG | - | chr3_2:30177875-30177894 | None:intergenic | 45.0% | |
| GTGTCATGCCTAGCTCATAA+TGG | + | chr3_2:30177923-30177942 | Msa0402240:CDS | 45.0% | |
| CCACCTTTCCATTATGAGCT+AGG | - | chr3_2:30177934-30177953 | None:intergenic | 45.0% | |
| ! | CCTAGCTCATAATGGAAAGG+TGG | + | chr3_2:30177931-30177950 | Msa0402240:CDS | 45.0% |
| ! | CTCATAATGGAAAGGTGGCA+TGG | + | chr3_2:30177936-30177955 | Msa0402240:CDS | 45.0% |
| !! | TTCCTCATGCAAGCATCGAA+TGG | + | chr3_2:30177991-30178010 | Msa0402240:CDS | 45.0% |
| !! | TCCTCATGCAAGCATCGAAT+GGG | + | chr3_2:30177992-30178011 | Msa0402240:CDS | 45.0% |
| ! | GGCTATCTTGCTGTCTTGTT+GGG | + | chr3_2:30178013-30178032 | Msa0402240:CDS | 45.0% |
| GCTACAGCGGCAAATGATGA+AGG | + | chr3_2:30174302-30174321 | Msa0402240:CDS | 50.0% | |
| ACAGCGGCAAATGATGAAGG+TGG | + | chr3_2:30174305-30174324 | Msa0402240:CDS | 50.0% | |
| ! | GCAAATGATGAAGGTGGTGG+TGG | + | chr3_2:30174311-30174330 | Msa0402240:CDS | 50.0% |
| GCAAAAGGAGGAGCAACTTG+GGG | + | chr3_2:30175336-30175355 | Msa0402240:CDS | 50.0% | |
| ! | GGGCATTAGATTGGTGTCCT+AGG | + | chr3_2:30175586-30175605 | Msa0402240:CDS | 50.0% |
| ! | GATTGGTGTCCTAGGATGCA+TGG | + | chr3_2:30175594-30175613 | Msa0402240:CDS | 50.0% |
| ! | TTGGTGTCCTAGGATGCATG+GGG | + | chr3_2:30175596-30175615 | Msa0402240:CDS | 50.0% |
| CAAGTGGGTGAGATGCAAAG+GGG | + | chr3_2:30176100-30176119 | Msa0402240:intron | 50.0% | |
| TAGCTATTAGGCCGAGTCCA+TGG | - | chr3_2:30176684-30176703 | None:intergenic | 50.0% | |
| ATCATATCTCCCCGGGAAGA+AGG | + | chr3_2:30177154-30177173 | Msa0402240:CDS | 50.0% | |
| GGGACCAAGTACATAGCATC+TGG | + | chr3_2:30177359-30177378 | Msa0402240:CDS | 50.0% | |
| GAACTGCCAGGAACTACATC+TGG | - | chr3_2:30177569-30177588 | None:intergenic | 50.0% | |
| ACCACATGGTAGCCCTGTAT+TGG | + | chr3_2:30177847-30177866 | Msa0402240:CDS | 50.0% | |
| TCCAATACAGGGCTACCATG+TGG | - | chr3_2:30177851-30177870 | None:intergenic | 50.0% | |
| GCTAGGCATGACACAACTCT+AGG | - | chr3_2:30177917-30177936 | None:intergenic | 50.0% | |
| AGGTGGCATGGGATGTCAAA+TGG | + | chr3_2:30177948-30177967 | Msa0402240:CDS | 50.0% | |
| TGGCATGGGATGTCAAATGG+AGG | + | chr3_2:30177951-30177970 | Msa0402240:CDS | 50.0% | |
| ! | GGGCTATCTTGCTGTCTTGT+TGG | + | chr3_2:30178012-30178031 | Msa0402240:CDS | 50.0% |
| ! | CTTGCTGTCTTGTTGGGCAA+TGG | + | chr3_2:30178019-30178038 | Msa0402240:CDS | 50.0% |
| CTTGTTGGGCAATGGATCTC+TGG | + | chr3_2:30178027-30178046 | Msa0402240:CDS | 50.0% | |
| GCGGCAAATGATGAAGGTGG+TGG | + | chr3_2:30174308-30174327 | Msa0402240:CDS | 55.0% | |
| ! | CTTAGGGTTAGCACCACTGC+TGG | - | chr3_2:30174342-30174361 | None:intergenic | 55.0% |
| ! | CAGCAGTGGTGCTAACCCTA+AGG | + | chr3_2:30174340-30174359 | Msa0402240:CDS | 55.0% |
| !! | GCAGAGGTGCCGTGCAAATA+TGG | + | chr3_2:30177096-30177115 | Msa0402240:CDS | 55.0% |
| GCCCATTCGATGCTTGCATG+AGG | - | chr3_2:30177996-30178015 | None:intergenic | 55.0% | |
| ! | GGTGGTGGTAGTACCAGCAG+TGG | + | chr3_2:30174326-30174345 | Msa0402240:CDS | 60.0% |
| TCAGGCTCCCCATGCATCCT+AGG | - | chr3_2:30175606-30175625 | None:intergenic | 60.0% | |
| GGTGCCTCACTTACTGGCAG+AGG | + | chr3_2:30177080-30177099 | Msa0402240:CDS | 60.0% | |
| GGCACCTCTGCCAGTAAGTG+AGG | - | chr3_2:30177087-30177106 | None:intergenic | 60.0% | |
| GCTGTTGCTGCTCATCCGCC+TGG | + | chr3_2:30177038-30177057 | Msa0402240:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 30174000 | 30178057 | 30174000 | ID=Msa0402240;Name=Msa0402240 |
| chr3_2 | mRNA | 30174000 | 30178057 | 30174000 | ID=Msa0402240-mRNA-1;Parent=Msa0402240;Name=Msa0402240-mRNA-1;_AED=0.27;_eAED=0.27;_QI=179|1|0.8|1|1|1|5|0|542 |
| chr3_2 | exon | 30174000 | 30174501 | 30174000 | ID=Msa0402240-mRNA-1:exon:6040;Parent=Msa0402240-mRNA-1 |
| chr3_2 | exon | 30175042 | 30175177 | 30175042 | ID=Msa0402240-mRNA-1:exon:6041;Parent=Msa0402240-mRNA-1 |
| chr3_2 | exon | 30175328 | 30175380 | 30175328 | ID=Msa0402240-mRNA-1:exon:6042;Parent=Msa0402240-mRNA-1 |
| chr3_2 | exon | 30175554 | 30175644 | 30175554 | ID=Msa0402240-mRNA-1:exon:6043;Parent=Msa0402240-mRNA-1 |
| chr3_2 | exon | 30177032 | 30178057 | 30177032 | ID=Msa0402240-mRNA-1:exon:6044;Parent=Msa0402240-mRNA-1 |
| chr3_2 | five_prime_UTR | 30174000 | 30174178 | 30174000 | ID=Msa0402240-mRNA-1:five_prime_utr;Parent=Msa0402240-mRNA-1 |
| chr3_2 | CDS | 30174179 | 30174501 | 30174179 | ID=Msa0402240-mRNA-1:cds;Parent=Msa0402240-mRNA-1 |
| chr3_2 | CDS | 30175042 | 30175177 | 30175042 | ID=Msa0402240-mRNA-1:cds;Parent=Msa0402240-mRNA-1 |
| chr3_2 | CDS | 30175328 | 30175380 | 30175328 | ID=Msa0402240-mRNA-1:cds;Parent=Msa0402240-mRNA-1 |
| chr3_2 | CDS | 30175554 | 30175644 | 30175554 | ID=Msa0402240-mRNA-1:cds;Parent=Msa0402240-mRNA-1 |
| chr3_2 | CDS | 30177032 | 30178057 | 30177032 | ID=Msa0402240-mRNA-1:cds;Parent=Msa0402240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
