Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708910 | XP_013468026.1 | 96.679 | 542 | 18 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1082 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708910 | A0A072VKV4 | 96.679 | 542 | 18 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1082 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024610 | Msa0708910 | 0.838363 | 3.007221e-57 | -8.615850e-47 |
| Msa0708900 | Msa0708910 | 0.981035 | 1.277707e-151 | -8.615850e-47 |
| Msa0708910 | Msa0806280 | 0.801179 | 1.017133e-48 | -8.615850e-47 |
| Msa0708910 | Msa0927290 | 0.803131 | 4.035314e-49 | -8.615850e-47 |
| Msa0402240 | Msa0708910 | 0.924208 | 9.570732e-90 | -8.615850e-47 |
| Msa0402250 | Msa0708910 | 0.926842 | 2.687679e-91 | -8.615850e-47 |
| Msa0292930 | Msa0708910 | 0.801498 | 8.753944e-49 | -8.615850e-47 |
| Msa0355170 | Msa0708910 | 0.914647 | 1.498636e-84 | -8.615850e-47 |
| Msa0355180 | Msa0708910 | 0.915346 | 6.566584e-85 | -8.615850e-47 |
| Msa0355190 | Msa0708910 | 0.936588 | 1.364839e-97 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708910 | MtrunA17_Chr1g0178981 | 96.679 | 542 | 18 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1082 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708910 | AT1G19485.1 | 35.378 | 489 | 204 | 16 | 62 | 542 | 8 | 392 | 1.89e-69 | 239 |
| Msa0708910 | AT1G19485.2 | 35.378 | 489 | 204 | 16 | 62 | 542 | 8 | 392 | 1.89e-69 | 239 |
Find 131 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATTGGTTCTCACAATT+TGG | 0.152126 | 4_4:+82704244 | None:intergenic |
| TGGTTCATCTTATCACAAAA+TGG | 0.221693 | 4_4:-82704686 | Msa0708910:CDS |
| TATGGTGTCTTCTAAATATC+AGG | 0.232318 | 4_4:-82704630 | Msa0708910:CDS |
| AATAATGGCCTACTTGTATC+TGG | 0.238881 | 4_4:+82703950 | None:intergenic |
| TGTATTCGCAGCAGCTTTCT+TGG | 0.251698 | 4_4:+82704108 | None:intergenic |
| ACCTTTCACAAAAGGGATTA+AGG | 0.259506 | 4_4:-82707686 | Msa0708910:five_prime_UTR |
| GTATGCAGAAGCAGCTTTCT+TGG | 0.268262 | 4_4:+82704036 | None:intergenic |
| ACTCTCTTGTTTGCAATTGC+AGG | 0.291928 | 4_4:+82707589 | None:intergenic |
| GCATTCTTTCCCTTTGTATT+CGG | 0.294913 | 4_4:+82704058 | None:intergenic |
| ATTAGGTTTACTTACGGAAT+TGG | 0.296469 | 4_4:-82706668 | Msa0708910:CDS |
| GGGCTATCTTGCTGTCTTGT+TGG | 0.306280 | 4_4:-82703732 | Msa0708910:CDS |
| GGCTATCTTGCTGTCTTGTT+GGG | 0.307911 | 4_4:-82703731 | Msa0708910:CDS |
| AATATCCATCTAAAAGCATT+AGG | 0.316447 | 4_4:-82706685 | Msa0708910:CDS |
| CAGGGTTTGAATATCAGTTC+TGG | 0.319518 | 4_4:-82707628 | Msa0708910:five_prime_UTR |
| AAAATGGGTGCCTCACTTAC+TGG | 0.325896 | 4_4:-82704670 | Msa0708910:CDS |
| ATTTCTCCAGATGTAGTTCC+TGG | 0.344586 | 4_4:-82704184 | Msa0708910:CDS |
| GAACAGTAAGAGGAACAAAT+TGG | 0.352749 | 4_4:+82704230 | None:intergenic |
| GAAATAAATTCAGCTGAATC+TGG | 0.353877 | 4_4:+82704202 | None:intergenic |
| TAAATAGTGTGGCAAAAGTT+AGG | 0.358408 | 4_4:+82707545 | None:intergenic |
| CTTGTTGGGCAATGGATCTC+TGG | 0.375077 | 4_4:-82703717 | Msa0708910:CDS |
| TTCTCACACTGAATCAATAA+TGG | 0.377014 | 4_4:+82703935 | None:intergenic |
| ATACTTGGATTCTTGAGGTT+TGG | 0.380840 | 4_4:+82706382 | None:intergenic |
| GCAGAGGTGCCGTGCAAATA+TGG | 0.381854 | 4_4:-82704648 | Msa0708910:CDS |
| GTAGGTTGGATATTAATCAT+AGG | 0.390058 | 4_4:-82703988 | Msa0708910:CDS |
| GGGCATTTACCTTTCACAAA+AGG | 0.395838 | 4_4:-82707694 | Msa0708910:five_prime_UTR |
| GCGTTGTTTATCAACAGAAC+AGG | 0.403768 | 4_4:-82707664 | Msa0708910:five_prime_UTR |
| GGCATTTACCTTTCACAAAA+GGG | 0.424513 | 4_4:-82707693 | Msa0708910:five_prime_UTR |
| TTAGGTTTACTTACGGAATT+GGG | 0.426191 | 4_4:-82706667 | Msa0708910:CDS |
| ATATCAAACAAAGAAACCTT+AGG | 0.426697 | 4_4:+82707388 | None:intergenic |
| GATGCTTGAGGTTCCAATAC+AGG | 0.430718 | 4_4:+82703884 | None:intergenic |
| AGGGTTTGAATATCAGTTCT+GGG | 0.431046 | 4_4:-82707627 | Msa0708910:five_prime_UTR |
| GCTGTTGCTGCTCATCCGCC+TGG | 0.432574 | 4_4:-82704706 | Msa0708910:CDS |
| CTTGCTGTCTTGTTGGGCAA+TGG | 0.437681 | 4_4:-82703725 | Msa0708910:CDS |
| GAACTGCCAGGAACTACATC+TGG | 0.439083 | 4_4:+82704178 | None:intergenic |
| GTTCTGTATGGGCATTAGAT+TGG | 0.440759 | 4_4:-82706167 | Msa0708910:CDS |
| ACCACATGGTAGCCCTGTAT+TGG | 0.442858 | 4_4:-82703897 | Msa0708910:CDS |
| GCATCTGGTAGTGTCTCAAA+TGG | 0.442876 | 4_4:-82704370 | Msa0708910:CDS |
| AGGTGGCATGGGATGTCAAA+TGG | 0.446867 | 4_4:-82703796 | Msa0708910:CDS |
| TCACATTTAATTGAACAATC+AGG | 0.451414 | 4_4:+82706123 | None:intergenic |
| TGCAAAAGGAGGAGCAACTT+GGG | 0.454385 | 4_4:-82706409 | Msa0708910:CDS |
| TCAGGCTCCCCATGCATCCT+AGG | 0.455090 | 4_4:+82706141 | None:intergenic |
| TTCATCTGCCACTGTTCCTA+AGG | 0.455578 | 4_4:-82706588 | Msa0708910:intron |
| CGAGAATTTCTTTGAAGACA+TGG | 0.460588 | 4_4:-82707359 | Msa0708910:CDS |
| AAAAGCATTAGGTTTACTTA+CGG | 0.463447 | 4_4:-82706674 | Msa0708910:CDS |
| CCACCTTTCCATTATGAGCT+AGG | 0.467563 | 4_4:+82703813 | None:intergenic |
| ATGCAAAAGGAGGAGCAACT+TGG | 0.467583 | 4_4:-82706410 | Msa0708910:CDS |
| TCCTCATGCAAGCATCGAAT+GGG | 0.467596 | 4_4:-82703752 | Msa0708910:CDS |
| GTGTCATGCCTAGCTCATAA+TGG | 0.467799 | 4_4:-82703821 | Msa0708910:CDS |
| ATCATATCTCCCCGGGAAGA+AGG | 0.467886 | 4_4:-82704590 | Msa0708910:CDS |
| GTCCACCTAGGTAAAGTAAA+GGG | 0.472023 | 4_4:-82707714 | Msa0708910:five_prime_UTR |
| GGTTCATCTTATCACAAAAT+GGG | 0.477171 | 4_4:-82704685 | Msa0708910:CDS |
| GGGCATTAGATTGGTGTCCT+AGG | 0.483270 | 4_4:-82706158 | Msa0708910:CDS |
| TCTGGAAGTTGAACAGTAAG+AGG | 0.486423 | 4_4:+82704220 | None:intergenic |
| CTCTTTGATATTAAATAGTG+TGG | 0.488495 | 4_4:+82707534 | None:intergenic |
| CTATCCACTGCTATTACAGT+TGG | 0.488965 | 4_4:+82704418 | None:intergenic |
| TCTTGTTGCAAGAAGTAGGT+TGG | 0.499166 | 4_4:-82704002 | Msa0708910:CDS |
| ATTGATTCAGTGTGAGAATG+AGG | 0.501894 | 4_4:-82703930 | Msa0708910:CDS |
| TGAATGTTGGAGGTTCTGTA+TGG | 0.503920 | 4_4:-82706179 | Msa0708910:CDS |
| ACAAATCGATAGAAATAAAG+AGG | 0.505265 | 4_4:-82704534 | Msa0708910:CDS |
| TGTCCACCTAGGTAAAGTAA+AGG | 0.506559 | 4_4:-82707715 | Msa0708910:five_prime_UTR |
| CTCATAATGGAAAGGTGGCA+TGG | 0.517043 | 4_4:-82703808 | Msa0708910:CDS |
| TATCAAACAAAGAAACCTTA+GGG | 0.521010 | 4_4:+82707389 | None:intergenic |
| TAGGTTGGATATTAATCATA+GGG | 0.524008 | 4_4:-82703987 | Msa0708910:CDS |
| AAACTCTTGTTGCAAGAAGT+AGG | 0.524383 | 4_4:-82704006 | Msa0708910:CDS |
| CTTAGGGTTAGCACCACTGC+TGG | 0.532612 | 4_4:+82707405 | None:intergenic |
| ATTGGTGTCCTAGGATGCAT+GGG | 0.532952 | 4_4:-82706149 | Msa0708910:CDS |
| TTCTTTCTAGGCCTTCCTCT+AGG | 0.533374 | 4_4:+82704511 | None:intergenic |
| TTCCTCATGCAAGCATCGAA+TGG | 0.535078 | 4_4:-82703753 | Msa0708910:CDS |
| GGGACCAAGTACATAGCATC+TGG | 0.536684 | 4_4:-82704385 | Msa0708910:CDS |
| ACTACCAGATGCTATGTACT+TGG | 0.537317 | 4_4:+82704381 | None:intergenic |
| GATTGGTGTCCTAGGATGCA+TGG | 0.541625 | 4_4:-82706150 | Msa0708910:CDS |
| CAGCAGTGGTGCTAACCCTA+AGG | 0.543146 | 4_4:-82707404 | Msa0708910:CDS |
| AAACCATACTTGGATTCTTG+AGG | 0.544459 | 4_4:+82706377 | None:intergenic |
| AGAGACTTTGTGATGAATGT+TGG | 0.551861 | 4_4:-82706192 | Msa0708910:CDS |
| AAAGCTGCTGCGAATACAAA+GGG | 0.552131 | 4_4:-82704103 | Msa0708910:CDS |
| AAAGCTGCTCCGAATACAAA+GGG | 0.553544 | 4_4:-82704067 | Msa0708910:CDS |
| ATAATGGCCTACTTGTATCT+GGG | 0.555195 | 4_4:+82703951 | None:intergenic |
| CATCTGGTAGTGTCTCAAAT+GGG | 0.555891 | 4_4:-82704369 | Msa0708910:CDS |
| TTAAATGTGCAGAGAATGGA+AGG | 0.560081 | 4_4:-82706714 | Msa0708910:intron |
| GCTACAGCGGCAAATGATGA+AGG | 0.560213 | 4_4:-82707442 | Msa0708910:CDS |
| ACACCATTGCTAAACTCTGT+GGG | 0.562879 | 4_4:-82707336 | Msa0708910:CDS |
| TTCCCCACAGAGTTTAGCAA+TGG | 0.564444 | 4_4:+82707333 | None:intergenic |
| TAGAAGACACCATATTTGCA+CGG | 0.566075 | 4_4:+82704639 | None:intergenic |
| GTTGTAGCCCAGATACAAGT+AGG | 0.566508 | 4_4:-82703958 | Msa0708910:CDS |
| CGTTGTTTATCAACAGAACA+GGG | 0.567059 | 4_4:-82707663 | Msa0708910:five_prime_UTR |
| GACTTTGTGATGAATGTTGG+AGG | 0.568156 | 4_4:-82706189 | Msa0708910:CDS |
| GAAAGCTGCTCCGAATACAA+AGG | 0.568270 | 4_4:-82704068 | Msa0708910:CDS |
| TGCTGATGATTCTGCTACAG+CGG | 0.574927 | 4_4:-82707455 | Msa0708910:CDS |
| AAATAAAGAGGCCTAGAGGA+AGG | 0.580422 | 4_4:-82704522 | Msa0708910:CDS |
| TGCCCTTTACTTTACCTAGG+TGG | 0.580871 | 4_4:+82707712 | None:intergenic |
| TGATGTTCATCAGAACTGCC+AGG | 0.583511 | 4_4:+82704166 | None:intergenic |
| GGTGCCTCACTTACTGGCAG+AGG | 0.584837 | 4_4:-82704664 | Msa0708910:CDS |
| TCATAATGGAAAGGTGGCAT+GGG | 0.586605 | 4_4:-82703807 | Msa0708910:CDS |
| AAGAAGTATCATATCTCCCC+GGG | 0.588430 | 4_4:-82704597 | Msa0708910:CDS |
| GAATCCAACTGTAATAGCAG+TGG | 0.589763 | 4_4:-82704422 | Msa0708910:CDS |
| GAAAGCTGCTGCGAATACAA+AGG | 0.590265 | 4_4:-82704104 | Msa0708910:CDS |
| CAGTGGATAGTACAAATTGT+GGG | 0.590541 | 4_4:-82704405 | Msa0708910:CDS |
| ATGGTGTCTTCTAAATATCA+GGG | 0.592032 | 4_4:-82704629 | Msa0708910:CDS |
| ATGCTTGAGGTTCCAATACA+GGG | 0.598484 | 4_4:+82703885 | None:intergenic |
| TTATTTGAAATTGTCCACCT+AGG | 0.601577 | 4_4:-82707726 | Msa0708910:five_prime_UTR |
| GCAAATGATGAAGGTGGTGG+TGG | 0.602662 | 4_4:-82707433 | Msa0708910:CDS |
| TCAGCATAATATGCAAAAGG+AGG | 0.605517 | 4_4:-82706420 | Msa0708910:intron |
| AAACAAGAGAGTAATGGAAG+AGG | 0.607256 | 4_4:-82707578 | Msa0708910:exon |
| GAAGAAGTATCATATCTCCC+CGG | 0.607569 | 4_4:-82704598 | Msa0708910:CDS |
| AAATGCCCTTTACTTTACCT+AGG | 0.608444 | 4_4:+82707709 | None:intergenic |
| GGCACCTCTGCCAGTAAGTG+AGG | 0.611285 | 4_4:+82704660 | None:intergenic |
| GACACCATTGCTAAACTCTG+TGG | 0.614594 | 4_4:-82707337 | Msa0708910:CDS |
| GAGGAATCAAGATTGCTAAG+AGG | 0.614969 | 4_4:+82703770 | None:intergenic |
| AATTGCAAACAAGAGAGTAA+TGG | 0.617423 | 4_4:-82707584 | Msa0708910:exon |
| CCTAGCTCATAATGGAAAGG+TGG | 0.620737 | 4_4:-82703813 | Msa0708910:CDS |
| CAGAACTGATATTCAAACCC+TGG | 0.624538 | 4_4:+82707629 | None:intergenic |
| GCAGTGGATAGTACAAATTG+TGG | 0.626003 | 4_4:-82704406 | Msa0708910:CDS |
| ATGCCTAGCTCATAATGGAA+AGG | 0.628963 | 4_4:-82703816 | Msa0708910:CDS |
| TGATTGTTCAATTAAATGTG+AGG | 0.630368 | 4_4:-82706121 | Msa0708910:intron |
| GCCCATTCGATGCTTGCATG+AGG | 0.635290 | 4_4:+82703751 | None:intergenic |
| GCTAGGCATGACACAACTCT+AGG | 0.640886 | 4_4:+82703830 | None:intergenic |
| GAATGTTGGAGGTTCTGTAT+GGG | 0.641333 | 4_4:-82706178 | Msa0708910:CDS |
| ATGGGACAAGTAGATGCTTG+AGG | 0.647867 | 4_4:+82703872 | None:intergenic |
| GCAAAAGGAGGAGCAACTTG+GGG | 0.648508 | 4_4:-82706408 | Msa0708910:CDS |
| ATAGAAATAAAGAGGCCTAG+AGG | 0.655432 | 4_4:-82704526 | Msa0708910:CDS |
| GCGGCAAATGATGAAGGTGG+TGG | 0.666480 | 4_4:-82707436 | Msa0708910:CDS |
| CACCATTGCTAAACTCTGTG+GGG | 0.668610 | 4_4:-82707335 | Msa0708910:CDS |
| GGTGGTGGTAGTACCAGCAG+TGG | 0.670189 | 4_4:-82707418 | Msa0708910:CDS |
| TGGCATGGGATGTCAAATGG+AGG | 0.678240 | 4_4:-82703793 | Msa0708910:CDS |
| GACTTGTACCTTAGGAACAG+TGG | 0.679559 | 4_4:+82706580 | None:intergenic |
| TCCAATACAGGGCTACCATG+TGG | 0.685481 | 4_4:+82703896 | None:intergenic |
| GAGGCAAATCATCAACCACA+TGG | 0.705993 | 4_4:-82703911 | Msa0708910:CDS |
| TTGGTGTCCTAGGATGCATG+GGG | 0.719461 | 4_4:-82706148 | Msa0708910:CDS |
| TTGTGATAAGATGAACCAGG+CGG | 0.737973 | 4_4:+82704691 | None:intergenic |
| ACAGCGGCAAATGATGAAGG+TGG | 0.745146 | 4_4:-82707439 | Msa0708910:CDS |
| ACAGTGGCAGATGAAAACTG+AGG | 0.800494 | 4_4:+82706596 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATTAGAGTAAAATAT+AGG | + | chr4_4:82704901-82704920 | None:intergenic | 10.0% |
| !!! | TAAGTATATATTTTGCTTTT+AGG | - | chr4_4:82704950-82704969 | Msa0708910:intron | 15.0% |
| !! | TAAAAGGATTTAGATTTAAA+TGG | - | chr4_4:82706036-82706055 | Msa0708910:intron | 15.0% |
| !! | TTTACTACATATATGAATAT+AGG | + | chr4_4:82706621-82706640 | None:intergenic | 15.0% |
| !! | TCTTCAAGTAAATATTTGAT+TGG | + | chr4_4:82704551-82704570 | None:intergenic | 20.0% |
| !! | AATCAAATATTTACTTGAAG+AGG | - | chr4_4:82704550-82704569 | Msa0708910:CDS | 20.0% |
| !! | ATCAAATATTTACTTGAAGA+GGG | - | chr4_4:82704551-82704570 | Msa0708910:CDS | 20.0% |
| !! | AACCAAAAAAAGAAATTAAG+GGG | + | chr4_4:82704714-82704733 | None:intergenic | 20.0% |
| !! | CAACCAAAAAAAGAAATTAA+GGG | + | chr4_4:82704715-82704734 | None:intergenic | 20.0% |
| !! | TCAACCAAAAAAAGAAATTA+AGG | + | chr4_4:82704716-82704735 | None:intergenic | 20.0% |
| !! | AAATTAGAGTAAAATATAGG+AGG | + | chr4_4:82704898-82704917 | None:intergenic | 20.0% |
| !! | TTTATTCAATGACATTTCTA+TGG | - | chr4_4:82705122-82705141 | Msa0708910:intron | 20.0% |
| !!! | ATATTGTTTTGTTACTTCTT+TGG | - | chr4_4:82705410-82705429 | Msa0708910:intron | 20.0% |
| !!! | TATTGTTTTGTTACTTCTTT+GGG | - | chr4_4:82705411-82705430 | Msa0708910:intron | 20.0% |
| !!! | AGATTTTATTTGAAGTTTGA+TGG | - | chr4_4:82705515-82705534 | Msa0708910:intron | 20.0% |
| !!! | TATTGTTCTTTTAAGAGTTA+AGG | - | chr4_4:82705574-82705593 | Msa0708910:intron | 20.0% |
| !!! | ATTGTTCTTTTAAGAGTTAA+GGG | - | chr4_4:82705575-82705594 | Msa0708910:intron | 20.0% |
| !! | TTCTTAAATTGTGTTGAATT+TGG | + | chr4_4:82705733-82705752 | None:intergenic | 20.0% |
| !!! | TCAACACAATTTAAGAATTT+TGG | - | chr4_4:82705736-82705755 | Msa0708910:intron | 20.0% |
| !!! | TTTCATTGTTATTTGTTTCA+TGG | + | chr4_4:82705764-82705783 | None:intergenic | 20.0% |
| !!! | AGCACATATTTTTGAAAAAA+TGG | - | chr4_4:82705939-82705958 | Msa0708910:intron | 20.0% |
| !!! | TTTTATTCCAAACTGTTAAA+AGG | - | chr4_4:82706020-82706039 | Msa0708910:intron | 20.0% |
| !! | CATAATTAACAAAAGGATTT+AGG | + | chr4_4:82706448-82706467 | None:intergenic | 20.0% |
| !!! | AATCCTTTTGTTAATTATGA+TGG | - | chr4_4:82706449-82706468 | Msa0708910:intron | 20.0% |
| !! | TATCAAAATAGGTATATGTA+TGG | + | chr4_4:82706564-82706583 | None:intergenic | 20.0% |
| !! | TTACATACAAGAGTAAAAAA+AGG | - | chr4_4:82707138-82707157 | Msa0708910:intron | 20.0% |
| !!! | ACAACAATTTTCTAATACAA+AGG | - | chr4_4:82707313-82707332 | Msa0708910:CDS | 20.0% |
| !!! | CAACAATTTTCTAATACAAA+GGG | - | chr4_4:82707314-82707333 | Msa0708910:CDS | 20.0% |
| ! | CTCTTTGATATTAAATAGTG+TGG | + | chr4_4:82703922-82703941 | None:intergenic | 25.0% |
| ! | TATCAAACAAAGAAACCTTA+GGG | + | chr4_4:82704067-82704086 | None:intergenic | 25.0% |
| ! | ATATCAAACAAAGAAACCTT+AGG | + | chr4_4:82704068-82704087 | None:intergenic | 25.0% |
| ! | ATCATACCTTAAAAAAGTGA+CGG | + | chr4_4:82704198-82704217 | None:intergenic | 25.0% |
| ! | ATAATCATTGAATGACTAAG+TGG | - | chr4_4:82704506-82704525 | Msa0708910:CDS | 25.0% |
| !!! | AACCCCTTAATTTCTTTTTT+TGG | - | chr4_4:82704709-82704728 | Msa0708910:CDS | 25.0% |
| !!! | AATATCCATCTAAAAGCATT+AGG | - | chr4_4:82704768-82704787 | Msa0708910:intron | 25.0% |
| !!! | AAAAGCATTAGGTTTACTTA+CGG | - | chr4_4:82704779-82704798 | Msa0708910:intron | 25.0% |
| !! | TTTTCAGCATAATATGCAAA+AGG | - | chr4_4:82705030-82705049 | Msa0708910:intron | 25.0% |
| ! | AGTTAATATCAAACCATACT+TGG | + | chr4_4:82705089-82705108 | None:intergenic | 25.0% |
| !!! | GATATTAACTTATTTTGTCG+TGG | - | chr4_4:82705099-82705118 | Msa0708910:intron | 25.0% |
| ! | TCACATTTAATTGAACAATC+AGG | + | chr4_4:82705333-82705352 | None:intergenic | 25.0% |
| ! | TGATTGTTCAATTAAATGTG+AGG | - | chr4_4:82705332-82705351 | Msa0708910:intron | 25.0% |
| !! | TCTAAATCCTTTTAACAGTT+TGG | + | chr4_4:82706030-82706049 | None:intergenic | 25.0% |
| ! | TTTATCACTAGAAATGATCT+AGG | - | chr4_4:82706059-82706078 | Msa0708910:intron | 25.0% |
| ! | CTAAATAGTATACACAATTG+CGG | - | chr4_4:82706196-82706215 | Msa0708910:intron | 25.0% |
| ! | AAAAAAAGTGAACGACAAAA+AGG | + | chr4_4:82706297-82706316 | None:intergenic | 25.0% |
| ! | TCTCCATCATAATTAACAAA+AGG | + | chr4_4:82706455-82706474 | None:intergenic | 25.0% |
| !!! | TACCTATTTTGATAGTTTTG+TGG | - | chr4_4:82706570-82706589 | Msa0708910:intron | 25.0% |
| ! | ACAAATCGATAGAAATAAAG+AGG | - | chr4_4:82706919-82706938 | Msa0708910:intron | 25.0% |
| !!! | CTTTTTCTCTTGTTTGTAAT+AGG | + | chr4_4:82706996-82707015 | None:intergenic | 25.0% |
| ! | ATTACAAACAAGAGAAAAAG+AGG | - | chr4_4:82706996-82707015 | Msa0708910:intron | 25.0% |
| !!! | ATTACAGTTGGATTCTTTTT+TGG | + | chr4_4:82707026-82707045 | None:intergenic | 25.0% |
| !! | CCATCTTTTGAATTCTTTTT+CGG | + | chr4_4:82707176-82707195 | None:intergenic | 25.0% |
| !! | TAGGTTGGATATTAATCATA+GGG | - | chr4_4:82707466-82707485 | Msa0708910:CDS | 25.0% |
| ! | TTATTTGAAATTGTCCACCT+AGG | - | chr4_4:82703727-82703746 | Msa0708910:CDS | 30.0% |
| AATTGCAAACAAGAGAGTAA+TGG | - | chr4_4:82703869-82703888 | Msa0708910:CDS | 30.0% | |
| TAAATAGTGTGGCAAAAGTT+AGG | + | chr4_4:82703911-82703930 | None:intergenic | 30.0% | |
| GAAAAAGAAGAAAAAGACGA+AGG | - | chr4_4:82703953-82703972 | Msa0708910:CDS | 30.0% | |
| !!! | TTTCTTCCGTCACTTTTTTA+AGG | - | chr4_4:82704189-82704208 | Msa0708910:CDS | 30.0% |
| GTTAATCTGTTGTGAAGAAA+TGG | - | chr4_4:82704261-82704280 | Msa0708910:CDS | 30.0% | |
| TTATAACCAACTCAAAGAGT+TGG | + | chr4_4:82704425-82704444 | None:intergenic | 30.0% | |
| !! | AACTCTTTGAGTTGGTTATA+AGG | - | chr4_4:82704424-82704443 | Msa0708910:CDS | 30.0% |
| GATTGGATAGACATAATTGT+AGG | + | chr4_4:82704534-82704553 | None:intergenic | 30.0% | |
| AATATTTACTTGAAGAGGGA+AGG | - | chr4_4:82704555-82704574 | Msa0708910:CDS | 30.0% | |
| ATATTTACTTGAAGAGGGAA+GGG | - | chr4_4:82704556-82704575 | Msa0708910:CDS | 30.0% | |
| AAAGAAATTAAGGGGTTGTT+TGG | + | chr4_4:82704706-82704725 | None:intergenic | 30.0% | |
| ! | GTAAACCTAATGCTTTTAGA+TGG | + | chr4_4:82704776-82704795 | None:intergenic | 30.0% |
| ATTAGGTTTACTTACGGAAT+TGG | - | chr4_4:82704785-82704804 | Msa0708910:intron | 30.0% | |
| TTAGGTTTACTTACGGAATT+GGG | - | chr4_4:82704786-82704805 | Msa0708910:intron | 30.0% | |
| CTCTAATTTAATTGTTTGCC+AGG | - | chr4_4:82704909-82704928 | Msa0708910:intron | 30.0% | |
| ATATACTATAACTTCATGCC+TGG | + | chr4_4:82704930-82704949 | None:intergenic | 30.0% | |
| ! | TCGCTGATTATTGTTTAACT+TGG | - | chr4_4:82705219-82705238 | Msa0708910:intron | 30.0% |
| !! | AGTCAATTCTGTCTTTTTCA+TGG | - | chr4_4:82705464-82705483 | Msa0708910:intron | 30.0% |
| !! | TTATTTGAAGTTTGATGGTG+AGG | - | chr4_4:82705520-82705539 | Msa0708910:intron | 30.0% |
| TAGCAGTAAAACATAGTGTA+CGG | - | chr4_4:82705643-82705662 | Msa0708910:intron | 30.0% | |
| TACGGCATATATTATAAGCA+AGG | - | chr4_4:82705661-82705680 | Msa0708910:intron | 30.0% | |
| ACGGCATATATTATAAGCAA+GGG | - | chr4_4:82705662-82705681 | Msa0708910:intron | 30.0% | |
| ACATAATTGTAGAATAGAGG+TGG | - | chr4_4:82705687-82705706 | Msa0708910:intron | 30.0% | |
| ATTAACCTAAAGGATTCAAG+TGG | - | chr4_4:82705793-82705812 | Msa0708910:intron | 30.0% | |
| TTAACCTAAAGGATTCAAGT+GGG | - | chr4_4:82705794-82705813 | Msa0708910:intron | 30.0% | |
| AATGCGTTAAAGAGAAAGTT+TGG | - | chr4_4:82705914-82705933 | Msa0708910:intron | 30.0% | |
| ATGCGTTAAAGAGAAAGTTT+GGG | - | chr4_4:82705915-82705934 | Msa0708910:intron | 30.0% | |
| AATAGGTATATGTATGGAGT+AGG | + | chr4_4:82706558-82706577 | None:intergenic | 30.0% | |
| GACCACAAAACTATCAAAAT+AGG | + | chr4_4:82706575-82706594 | None:intergenic | 30.0% | |
| TAAACCAAGTATCAGAAAGA+AGG | + | chr4_4:82706720-82706739 | None:intergenic | 30.0% | |
| ! | ATTTTGTGATAAGATGAACC+AGG | + | chr4_4:82706768-82706787 | None:intergenic | 30.0% |
| TGGTTCATCTTATCACAAAA+TGG | - | chr4_4:82706767-82706786 | Msa0708910:intron | 30.0% | |
| GGTTCATCTTATCACAAAAT+GGG | - | chr4_4:82706768-82706787 | Msa0708910:intron | 30.0% | |
| TATGGTGTCTTCTAAATATC+AGG | - | chr4_4:82706823-82706842 | Msa0708910:intron | 30.0% | |
| ATGGTGTCTTCTAAATATCA+GGG | - | chr4_4:82706824-82706843 | Msa0708910:intron | 30.0% | |
| ! | TTTTCAGTAGGATTCTTTCT+AGG | + | chr4_4:82706957-82706976 | None:intergenic | 30.0% |
| AAGAGTAAAAAAAGGCCTAA+AGG | - | chr4_4:82707146-82707165 | Msa0708910:intron | 30.0% | |
| CCGAAAAAGAATTCAAAAGA+TGG | - | chr4_4:82707173-82707192 | Msa0708910:intron | 30.0% | |
| ! | ACAAATTGGTTCTCACAATT+TGG | + | chr4_4:82707212-82707231 | None:intergenic | 30.0% |
| GAAATAAATTCAGCTGAATC+TGG | + | chr4_4:82707254-82707273 | None:intergenic | 30.0% | |
| ! | GTAGGTTGGATATTAATCAT+AGG | - | chr4_4:82707465-82707484 | Msa0708910:CDS | 30.0% |
| TTCTCACACTGAATCAATAA+TGG | + | chr4_4:82707521-82707540 | None:intergenic | 30.0% | |
| ! | AATGCTACATTTTGTGGAAT+GGG | + | chr4_4:82707602-82707621 | None:intergenic | 30.0% |
| AAATGCCCTTTACTTTACCT+AGG | + | chr4_4:82703747-82703766 | None:intergenic | 35.0% | |
| GGCATTTACCTTTCACAAAA+GGG | - | chr4_4:82703760-82703779 | Msa0708910:CDS | 35.0% | |
| ACCTTTCACAAAAGGGATTA+AGG | - | chr4_4:82703767-82703786 | Msa0708910:CDS | 35.0% | |
| CGTTGTTTATCAACAGAACA+GGG | - | chr4_4:82703790-82703809 | Msa0708910:CDS | 35.0% | |
| AGGGTTTGAATATCAGTTCT+GGG | - | chr4_4:82703826-82703845 | Msa0708910:CDS | 35.0% | |
| ! | AAACAAGAGAGTAATGGAAG+AGG | - | chr4_4:82703875-82703894 | Msa0708910:CDS | 35.0% |
| ! | CGAGAATTTCTTTGAAGACA+TGG | - | chr4_4:82704094-82704113 | Msa0708910:CDS | 35.0% |
| TGTTCTTGAGCAATACGATT+TGG | - | chr4_4:82704295-82704314 | Msa0708910:CDS | 35.0% | |
| ! | AGAGTTGGTTAGGATTGATT+AGG | + | chr4_4:82704410-82704429 | None:intergenic | 35.0% |
| TATGAACCGAATCTCTAAGT+TGG | - | chr4_4:82704623-82704642 | Msa0708910:CDS | 35.0% | |
| ATGAACCGAATCTCTAAGTT+GGG | - | chr4_4:82704624-82704643 | Msa0708910:CDS | 35.0% | |
| ACCATTAAATGTGCAGAGAA+TGG | - | chr4_4:82704735-82704754 | Msa0708910:intron | 35.0% | |
| TCCATTCTCTGCACATTTAA+TGG | + | chr4_4:82704739-82704758 | None:intergenic | 35.0% | |
| TTAAATGTGCAGAGAATGGA+AGG | - | chr4_4:82704739-82704758 | Msa0708910:intron | 35.0% | |
| TCAGCATAATATGCAAAAGG+AGG | - | chr4_4:82705033-82705052 | Msa0708910:intron | 35.0% | |
| ATACTTGGATTCTTGAGGTT+TGG | + | chr4_4:82705074-82705093 | None:intergenic | 35.0% | |
| AAACCTCAAGAATCCAAGTA+TGG | - | chr4_4:82705073-82705092 | Msa0708910:intron | 35.0% | |
| AAACCATACTTGGATTCTTG+AGG | + | chr4_4:82705079-82705098 | None:intergenic | 35.0% | |
| AACTTGGCTAAACACTTTGT+TGG | - | chr4_4:82705235-82705254 | Msa0708910:intron | 35.0% | |
| AGAGACTTTGTGATGAATGT+TGG | - | chr4_4:82705261-82705280 | Msa0708910:intron | 35.0% | |
| TGTGATGTTTCATACGTTGA+GGG | - | chr4_4:82705492-82705511 | Msa0708910:intron | 35.0% | |
| CTCTTAAAAGAACAATACGC+TGG | + | chr4_4:82705571-82705590 | None:intergenic | 35.0% | |
| CGGCATATATTATAAGCAAG+GGG | - | chr4_4:82705663-82705682 | Msa0708910:intron | 35.0% | |
| GGCACATAATTGTAGAATAG+AGG | - | chr4_4:82705684-82705703 | Msa0708910:intron | 35.0% | |
| GTGTTGAATTTGGTATGCTA+TGG | + | chr4_4:82705723-82705742 | None:intergenic | 35.0% | |
| ACAGAGCGAAATTAACCTAA+AGG | - | chr4_4:82705783-82705802 | Msa0708910:intron | 35.0% | |
| ! | GTAATTTTCGATCACAAAGC+AGG | + | chr4_4:82705841-82705860 | None:intergenic | 35.0% |
| AAATGGAAAAACACTGCCTT+AGG | - | chr4_4:82705956-82705975 | Msa0708910:intron | 35.0% | |
| GATATAGTACTATTGCTGAG+AGG | + | chr4_4:82706143-82706162 | None:intergenic | 35.0% | |
| CTATCAAATAGCGACTATAG+TGG | + | chr4_4:82706167-82706186 | None:intergenic | 35.0% | |
| GACATTTGGCATACAGAAAA+TGG | + | chr4_4:82706365-82706384 | None:intergenic | 35.0% | |
| ! | GTTAATTATGATGGAGACAC+TGG | - | chr4_4:82706458-82706477 | Msa0708910:intron | 35.0% |
| TTATTTCCTACTTCCAAGTC+TGG | + | chr4_4:82706664-82706683 | None:intergenic | 35.0% | |
| ATGACCTTCTTTCTGATACT+TGG | - | chr4_4:82706713-82706732 | Msa0708910:intron | 35.0% | |
| TAGAAGACACCATATTTGCA+CGG | + | chr4_4:82706817-82706836 | None:intergenic | 35.0% | |
| !!! | AGGTTTTTTTTCCTTCTTCC+CGG | + | chr4_4:82706877-82706896 | None:intergenic | 35.0% |
| !!! | TTTGTGCACGTGTCTTTTTT+AGG | + | chr4_4:82706897-82706916 | None:intergenic | 35.0% |
| ATAGAAATAAAGAGGCCTAG+AGG | - | chr4_4:82706927-82706946 | Msa0708910:intron | 35.0% | |
| !! | ATTGCTTCGTTGTTTTCAGT+AGG | + | chr4_4:82706969-82706988 | None:intergenic | 35.0% |
| CAGTGGATAGTACAAATTGT+GGG | - | chr4_4:82707048-82707067 | Msa0708910:intron | 35.0% | |
| !!! | TTCTTTTTCGGTCTTCCTTT+AGG | + | chr4_4:82707164-82707183 | None:intergenic | 35.0% |
| GAACAGTAAGAGGAACAAAT+TGG | + | chr4_4:82707226-82707245 | None:intergenic | 35.0% | |
| GCATTCTTTCCCTTTGTATT+CGG | + | chr4_4:82707326-82707345 | None:intergenic | 35.0% | |
| AAACTCTTGTTGCAAGAAGT+AGG | - | chr4_4:82707447-82707466 | Msa0708910:CDS | 35.0% | |
| ATAATGGCCTACTTGTATCT+GGG | + | chr4_4:82707505-82707524 | None:intergenic | 35.0% | |
| AATAATGGCCTACTTGTATC+TGG | + | chr4_4:82707506-82707525 | None:intergenic | 35.0% | |
| ! | ATTGATTCAGTGTGAGAATG+AGG | - | chr4_4:82707523-82707542 | Msa0708910:CDS | 35.0% |
| ! | CAATGCTACATTTTGTGGAA+TGG | + | chr4_4:82707603-82707622 | None:intergenic | 35.0% |
| TGTCCACCTAGGTAAAGTAA+AGG | - | chr4_4:82703738-82703757 | Msa0708910:CDS | 40.0% | |
| GTCCACCTAGGTAAAGTAAA+GGG | - | chr4_4:82703739-82703758 | Msa0708910:CDS | 40.0% | |
| GGGCATTTACCTTTCACAAA+AGG | - | chr4_4:82703759-82703778 | Msa0708910:CDS | 40.0% | |
| ! | GCCTTAATCCCTTTTGTGAA+AGG | + | chr4_4:82703771-82703790 | None:intergenic | 40.0% |
| GCGTTGTTTATCAACAGAAC+AGG | - | chr4_4:82703789-82703808 | Msa0708910:CDS | 40.0% | |
| CAGAACTGATATTCAAACCC+TGG | + | chr4_4:82703827-82703846 | None:intergenic | 40.0% | |
| CAGGGTTTGAATATCAGTTC+TGG | - | chr4_4:82703825-82703844 | Msa0708910:CDS | 40.0% | |
| ! | ACTCTCTTGTTTGCAATTGC+AGG | + | chr4_4:82703867-82703886 | None:intergenic | 40.0% |
| ACACCATTGCTAAACTCTGT+GGG | - | chr4_4:82704117-82704136 | Msa0708910:CDS | 40.0% | |
| ATGTATCAGCTATGATGCTC+TGG | - | chr4_4:82704335-82704354 | Msa0708910:CDS | 40.0% | |
| TCCTAACCAACTCTTTGAGT+TGG | - | chr4_4:82704416-82704435 | Msa0708910:CDS | 40.0% | |
| ! | ACCAACTCAAAGAGTTGGTT+AGG | + | chr4_4:82704420-82704439 | None:intergenic | 40.0% |
| AGGCAGTGCTAATCTATGTA+AGG | - | chr4_4:82704444-82704463 | Msa0708910:CDS | 40.0% | |
| CGAAACCCAACTTAGAGATT+CGG | + | chr4_4:82704632-82704651 | None:intergenic | 40.0% | |
| TATAGGAGGACTTGTACCTT+AGG | + | chr4_4:82704884-82704903 | None:intergenic | 40.0% | |
| GACTTTGTGATGAATGTTGG+AGG | - | chr4_4:82705264-82705283 | Msa0708910:intron | 40.0% | |
| TGAATGTTGGAGGTTCTGTA+TGG | - | chr4_4:82705274-82705293 | Msa0708910:intron | 40.0% | |
| GAATGTTGGAGGTTCTGTAT+GGG | - | chr4_4:82705275-82705294 | Msa0708910:intron | 40.0% | |
| GTTCTGTATGGGCATTAGAT+TGG | - | chr4_4:82705286-82705305 | Msa0708910:intron | 40.0% | |
| GTGTGATGTTTCATACGTTG+AGG | - | chr4_4:82705491-82705510 | Msa0708910:intron | 40.0% | |
| !! | TGAAGTTTGATGGTGAGGTA+AGG | - | chr4_4:82705525-82705544 | Msa0708910:intron | 40.0% |
| !! | GAAGTTTGATGGTGAGGTAA+GGG | - | chr4_4:82705526-82705545 | Msa0708910:intron | 40.0% |
| !! | AAGTTTGATGGTGAGGTAAG+GGG | - | chr4_4:82705527-82705546 | Msa0708910:intron | 40.0% |
| GCTACTTCTACTCACACATT+CGG | + | chr4_4:82705627-82705646 | None:intergenic | 40.0% | |
| ATACATGTCCAAACCACCTA+AGG | + | chr4_4:82705975-82705994 | None:intergenic | 40.0% | |
| ! | TGGTTTGGACATGTATTGAG+AGG | - | chr4_4:82705979-82705998 | Msa0708910:intron | 40.0% |
| GTGTTGTCAATCTCAGATAG+TGG | - | chr4_4:82706105-82706124 | Msa0708910:intron | 40.0% | |
| ! | CACTATAACGTGGTGGAATT+TGG | + | chr4_4:82706227-82706246 | None:intergenic | 40.0% |
| CAAATTCCACCACGTTATAG+TGG | - | chr4_4:82706225-82706244 | Msa0708910:intron | 40.0% | |
| GATGCTATACCACTATAACG+TGG | + | chr4_4:82706237-82706256 | None:intergenic | 40.0% | |
| AAGGAATTACCCACATCACA+GGG | + | chr4_4:82706278-82706297 | None:intergenic | 40.0% | |
| AAAGGAATTACCCACATCAC+AGG | + | chr4_4:82706279-82706298 | None:intergenic | 40.0% | |
| TTGGCATACAGAAAATGGTG+AGG | + | chr4_4:82706360-82706379 | None:intergenic | 40.0% | |
| ! | CATGGTGTCAACTAGCTATT+AGG | + | chr4_4:82706405-82706424 | None:intergenic | 40.0% |
| CACCATGTTAAATTACCACC+TGG | - | chr4_4:82706418-82706437 | Msa0708910:CDS | 40.0% | |
| AGCCAGGTGGTAATTTAACA+TGG | + | chr4_4:82706423-82706442 | None:intergenic | 40.0% | |
| CAAAAGGATTTAGGTAAGCC+AGG | + | chr4_4:82706439-82706458 | None:intergenic | 40.0% | |
| ACTTACCTTTGTTCCAGACT+TGG | - | chr4_4:82706648-82706667 | Msa0708910:CDS | 40.0% | |
| ! | TACTTCCAAGTCTGGAACAA+AGG | + | chr4_4:82706656-82706675 | None:intergenic | 40.0% |
| TTTGTTCCAGACTTGGAAGT+AGG | - | chr4_4:82706655-82706674 | Msa0708910:CDS | 40.0% | |
| TTGTGATAAGATGAACCAGG+CGG | + | chr4_4:82706765-82706784 | None:intergenic | 40.0% | |
| !! | GAAGAAGTATCATATCTCCC+CGG | - | chr4_4:82706855-82706874 | Msa0708910:intron | 40.0% |
| !! | AAGAAGTATCATATCTCCCC+GGG | - | chr4_4:82706856-82706875 | Msa0708910:intron | 40.0% |
| !!! | GTTTTTTTTCCTTCTTCCCG+GGG | + | chr4_4:82706875-82706894 | None:intergenic | 40.0% |
| !!! | GGTTTTTTTTCCTTCTTCCC+GGG | + | chr4_4:82706876-82706895 | None:intergenic | 40.0% |
| AAATAAAGAGGCCTAGAGGA+AGG | - | chr4_4:82706931-82706950 | Msa0708910:intron | 40.0% | |
| GAATCCAACTGTAATAGCAG+TGG | - | chr4_4:82707031-82707050 | Msa0708910:intron | 40.0% | |
| CTATCCACTGCTATTACAGT+TGG | + | chr4_4:82707038-82707057 | None:intergenic | 40.0% | |
| GCAGTGGATAGTACAAATTG+TGG | - | chr4_4:82707047-82707066 | Msa0708910:intron | 40.0% | |
| ACTACCAGATGCTATGTACT+TGG | + | chr4_4:82707075-82707094 | None:intergenic | 40.0% | |
| ! | CATCTGGTAGTGTCTCAAAT+GGG | - | chr4_4:82707084-82707103 | Msa0708910:intron | 40.0% |
| TCTGGAAGTTGAACAGTAAG+AGG | + | chr4_4:82707236-82707255 | None:intergenic | 40.0% | |
| ATTTCTCCAGATGTAGTTCC+TGG | - | chr4_4:82707269-82707288 | Msa0708910:CDS | 40.0% | |
| AAAGCTGCTGCGAATACAAA+GGG | - | chr4_4:82707350-82707369 | Msa0708910:CDS | 40.0% | |
| AAAGCTGCTCCGAATACAAA+GGG | - | chr4_4:82707386-82707405 | Msa0708910:CDS | 40.0% | |
| TCTTGTTGCAAGAAGTAGGT+TGG | - | chr4_4:82707451-82707470 | Msa0708910:CDS | 40.0% | |
| ATGCTTGAGGTTCCAATACA+GGG | + | chr4_4:82707571-82707590 | None:intergenic | 40.0% | |
| ! | CTAGGCAATGCTACATTTTG+TGG | + | chr4_4:82707608-82707627 | None:intergenic | 40.0% |
| ! | ATGCCTAGCTCATAATGGAA+AGG | - | chr4_4:82707637-82707656 | Msa0708910:five_prime_UTR | 40.0% |
| ! | TCATAATGGAAAGGTGGCAT+GGG | - | chr4_4:82707646-82707665 | Msa0708910:five_prime_UTR | 40.0% |
| GAGGAATCAAGATTGCTAAG+AGG | + | chr4_4:82707686-82707705 | None:intergenic | 40.0% | |
| TGCCCTTTACTTTACCTAGG+TGG | + | chr4_4:82703744-82703763 | None:intergenic | 45.0% | |
| !!! | AACAGGGTTTTAGCTTGTCC+AGG | - | chr4_4:82703806-82703825 | Msa0708910:CDS | 45.0% |
| !!! | ACAGGGTTTTAGCTTGTCCA+GGG | - | chr4_4:82703807-82703826 | Msa0708910:CDS | 45.0% |
| TGCTGATGATTCTGCTACAG+CGG | - | chr4_4:82703998-82704017 | Msa0708910:CDS | 45.0% | |
| GACACCATTGCTAAACTCTG+TGG | - | chr4_4:82704116-82704135 | Msa0708910:CDS | 45.0% | |
| CACCATTGCTAAACTCTGTG+GGG | - | chr4_4:82704118-82704137 | Msa0708910:CDS | 45.0% | |
| TTCCCCACAGAGTTTAGCAA+TGG | + | chr4_4:82704123-82704142 | None:intergenic | 45.0% | |
| GGCGATAGTGATACAAACTG+AGG | + | chr4_4:82704389-82704408 | None:intergenic | 45.0% | |
| TTGAAGAGGGAAGGGAAAGT+TGG | - | chr4_4:82704564-82704583 | Msa0708910:CDS | 45.0% | |
| ACAGTGGCAGATGAAAACTG+AGG | + | chr4_4:82704860-82704879 | None:intergenic | 45.0% | |
| TTCATCTGCCACTGTTCCTA+AGG | - | chr4_4:82704865-82704884 | Msa0708910:intron | 45.0% | |
| GACTTGTACCTTAGGAACAG+TGG | + | chr4_4:82704876-82704895 | None:intergenic | 45.0% | |
| ATGCAAAAGGAGGAGCAACT+TGG | - | chr4_4:82705043-82705062 | Msa0708910:intron | 45.0% | |
| TGCAAAAGGAGGAGCAACTT+GGG | - | chr4_4:82705044-82705063 | Msa0708910:intron | 45.0% | |
| ! | ATTGGTGTCCTAGGATGCAT+GGG | - | chr4_4:82705304-82705323 | Msa0708910:intron | 45.0% |
| ! | GGTAAGGGGCACATAGTATA+TGG | - | chr4_4:82705541-82705560 | Msa0708910:intron | 45.0% |
| CTCACCCACTTGAATCCTTT+AGG | + | chr4_4:82705801-82705820 | None:intergenic | 45.0% | |
| TTCAAGTGGGTGAGATGCAA+AGG | - | chr4_4:82705807-82705826 | Msa0708910:intron | 45.0% | |
| TCAAGTGGGTGAGATGCAAA+GGG | - | chr4_4:82705808-82705827 | Msa0708910:intron | 45.0% | |
| TGGAAAAACACTGCCTTAGG+TGG | - | chr4_4:82705959-82705978 | Msa0708910:intron | 45.0% | |
| AAACACTGCCTTAGGTGGTT+TGG | - | chr4_4:82705964-82705983 | Msa0708910:intron | 45.0% | |
| GCTATACCACTATAACGTGG+TGG | + | chr4_4:82706234-82706253 | None:intergenic | 45.0% | |
| TGCTATTATCCCCTGTGATG+TGG | - | chr4_4:82706265-82706284 | Msa0708910:intron | 45.0% | |
| GCTATTATCCCCTGTGATGT+GGG | - | chr4_4:82706266-82706285 | Msa0708910:intron | 45.0% | |
| AGGAATTACCCACATCACAG+GGG | + | chr4_4:82706277-82706296 | None:intergenic | 45.0% | |
| ATGCCAAATGTCAGATGCCA+TGG | - | chr4_4:82706373-82706392 | Msa0708910:intron | 45.0% | |
| AGTCCATGGCATCTGACATT+TGG | + | chr4_4:82706379-82706398 | None:intergenic | 45.0% | |
| AATGTCAGATGCCATGGACT+CGG | - | chr4_4:82706379-82706398 | Msa0708910:intron | 45.0% | |
| AAGGATTTAGGTAAGCCAGG+TGG | + | chr4_4:82706436-82706455 | None:intergenic | 45.0% | |
| AAAATGGGTGCCTCACTTAC+TGG | - | chr4_4:82706783-82706802 | Msa0708910:intron | 45.0% | |
| TTCTTTCTAGGCCTTCCTCT+AGG | + | chr4_4:82706945-82706964 | None:intergenic | 45.0% | |
| ! | GCATCTGGTAGTGTCTCAAA+TGG | - | chr4_4:82707083-82707102 | Msa0708910:intron | 45.0% |
| TGATGTTCATCAGAACTGCC+AGG | + | chr4_4:82707290-82707309 | None:intergenic | 45.0% | |
| TGTATTCGCAGCAGCTTTCT+TGG | + | chr4_4:82707348-82707367 | None:intergenic | 45.0% | |
| GAAAGCTGCTGCGAATACAA+AGG | - | chr4_4:82707349-82707368 | Msa0708910:CDS | 45.0% | |
| GAAAGCTGCTCCGAATACAA+AGG | - | chr4_4:82707385-82707404 | Msa0708910:CDS | 45.0% | |
| GTATGCAGAAGCAGCTTTCT+TGG | + | chr4_4:82707420-82707439 | None:intergenic | 45.0% | |
| GTTGTAGCCCAGATACAAGT+AGG | - | chr4_4:82707495-82707514 | Msa0708910:CDS | 45.0% | |
| GAGGCAAATCATCAACCACA+TGG | - | chr4_4:82707542-82707561 | Msa0708910:CDS | 45.0% | |
| GATGCTTGAGGTTCCAATAC+AGG | + | chr4_4:82707572-82707591 | None:intergenic | 45.0% | |
| ATGGGACAAGTAGATGCTTG+AGG | + | chr4_4:82707584-82707603 | None:intergenic | 45.0% | |
| GTGTCATGCCTAGCTCATAA+TGG | - | chr4_4:82707632-82707651 | Msa0708910:five_prime_UTR | 45.0% | |
| CCACCTTTCCATTATGAGCT+AGG | + | chr4_4:82707643-82707662 | None:intergenic | 45.0% | |
| ! | CCTAGCTCATAATGGAAAGG+TGG | - | chr4_4:82707640-82707659 | Msa0708910:five_prime_UTR | 45.0% |
| ! | CTCATAATGGAAAGGTGGCA+TGG | - | chr4_4:82707645-82707664 | Msa0708910:five_prime_UTR | 45.0% |
| !! | TTCCTCATGCAAGCATCGAA+TGG | - | chr4_4:82707700-82707719 | Msa0708910:five_prime_UTR | 45.0% |
| !! | TCCTCATGCAAGCATCGAAT+GGG | - | chr4_4:82707701-82707720 | Msa0708910:five_prime_UTR | 45.0% |
| ! | GGCTATCTTGCTGTCTTGTT+GGG | - | chr4_4:82707722-82707741 | Msa0708910:five_prime_UTR | 45.0% |
| GCTACAGCGGCAAATGATGA+AGG | - | chr4_4:82704011-82704030 | Msa0708910:CDS | 50.0% | |
| ACAGCGGCAAATGATGAAGG+TGG | - | chr4_4:82704014-82704033 | Msa0708910:CDS | 50.0% | |
| ! | GCAAATGATGAAGGTGGTGG+TGG | - | chr4_4:82704020-82704039 | Msa0708910:CDS | 50.0% |
| GCAAAAGGAGGAGCAACTTG+GGG | - | chr4_4:82705045-82705064 | Msa0708910:intron | 50.0% | |
| ! | GGGCATTAGATTGGTGTCCT+AGG | - | chr4_4:82705295-82705314 | Msa0708910:intron | 50.0% |
| ! | GATTGGTGTCCTAGGATGCA+TGG | - | chr4_4:82705303-82705322 | Msa0708910:intron | 50.0% |
| ! | TTGGTGTCCTAGGATGCATG+GGG | - | chr4_4:82705305-82705324 | Msa0708910:intron | 50.0% |
| CAAGTGGGTGAGATGCAAAG+GGG | - | chr4_4:82705809-82705828 | Msa0708910:intron | 50.0% | |
| TAGCTATTAGGCCGAGTCCA+TGG | + | chr4_4:82706393-82706412 | None:intergenic | 50.0% | |
| ATCATATCTCCCCGGGAAGA+AGG | - | chr4_4:82706863-82706882 | Msa0708910:intron | 50.0% | |
| GGGACCAAGTACATAGCATC+TGG | - | chr4_4:82707068-82707087 | Msa0708910:intron | 50.0% | |
| GAACTGCCAGGAACTACATC+TGG | + | chr4_4:82707278-82707297 | None:intergenic | 50.0% | |
| ACCACATGGTAGCCCTGTAT+TGG | - | chr4_4:82707556-82707575 | Msa0708910:CDS | 50.0% | |
| TCCAATACAGGGCTACCATG+TGG | + | chr4_4:82707560-82707579 | None:intergenic | 50.0% | |
| GCTAGGCATGACACAACTCT+AGG | + | chr4_4:82707626-82707645 | None:intergenic | 50.0% | |
| AGGTGGCATGGGATGTCAAA+TGG | - | chr4_4:82707657-82707676 | Msa0708910:five_prime_UTR | 50.0% | |
| TGGCATGGGATGTCAAATGG+AGG | - | chr4_4:82707660-82707679 | Msa0708910:five_prime_UTR | 50.0% | |
| ! | GGGCTATCTTGCTGTCTTGT+TGG | - | chr4_4:82707721-82707740 | Msa0708910:five_prime_UTR | 50.0% |
| ! | CTTGCTGTCTTGTTGGGCAA+TGG | - | chr4_4:82707728-82707747 | Msa0708910:five_prime_UTR | 50.0% |
| CTTGTTGGGCAATGGATCTC+TGG | - | chr4_4:82707736-82707755 | Msa0708910:five_prime_UTR | 50.0% | |
| GCGGCAAATGATGAAGGTGG+TGG | - | chr4_4:82704017-82704036 | Msa0708910:CDS | 55.0% | |
| ! | CTTAGGGTTAGCACCACTGC+TGG | + | chr4_4:82704051-82704070 | None:intergenic | 55.0% |
| ! | CAGCAGTGGTGCTAACCCTA+AGG | - | chr4_4:82704049-82704068 | Msa0708910:CDS | 55.0% |
| !! | GCAGAGGTGCCGTGCAAATA+TGG | - | chr4_4:82706805-82706824 | Msa0708910:intron | 55.0% |
| GCCCATTCGATGCTTGCATG+AGG | + | chr4_4:82707705-82707724 | None:intergenic | 55.0% | |
| ! | GGTGGTGGTAGTACCAGCAG+TGG | - | chr4_4:82704035-82704054 | Msa0708910:CDS | 60.0% |
| TCAGGCTCCCCATGCATCCT+AGG | + | chr4_4:82705315-82705334 | None:intergenic | 60.0% | |
| GGTGCCTCACTTACTGGCAG+AGG | - | chr4_4:82706789-82706808 | Msa0708910:intron | 60.0% | |
| GGCACCTCTGCCAGTAAGTG+AGG | + | chr4_4:82706796-82706815 | None:intergenic | 60.0% | |
| GCTGTTGCTGCTCATCCGCC+TGG | - | chr4_4:82706747-82706766 | Msa0708910:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 82703709 | 82707766 | 82703709 | ID=Msa0708910;Name=Msa0708910 |
| chr4_4 | mRNA | 82703709 | 82707766 | 82703709 | ID=Msa0708910-mRNA-1;Parent=Msa0708910;Name=Msa0708910-mRNA-1;_AED=0.27;_eAED=0.27;_QI=179|1|0.8|1|1|1|5|0|542 |
| chr4_4 | exon | 82703709 | 82704734 | 82703709 | ID=Msa0708910-mRNA-1:exon:27294;Parent=Msa0708910-mRNA-1 |
| chr4_4 | exon | 82706122 | 82706212 | 82706122 | ID=Msa0708910-mRNA-1:exon:27293;Parent=Msa0708910-mRNA-1 |
| chr4_4 | exon | 82706386 | 82706438 | 82706386 | ID=Msa0708910-mRNA-1:exon:27292;Parent=Msa0708910-mRNA-1 |
| chr4_4 | exon | 82706589 | 82706724 | 82706589 | ID=Msa0708910-mRNA-1:exon:27291;Parent=Msa0708910-mRNA-1 |
| chr4_4 | exon | 82707265 | 82707766 | 82707265 | ID=Msa0708910-mRNA-1:exon:27290;Parent=Msa0708910-mRNA-1 |
| chr4_4 | five_prime_UTR | 82707588 | 82707766 | 82707588 | ID=Msa0708910-mRNA-1:five_prime_utr;Parent=Msa0708910-mRNA-1 |
| chr4_4 | CDS | 82707265 | 82707587 | 82707265 | ID=Msa0708910-mRNA-1:cds;Parent=Msa0708910-mRNA-1 |
| chr4_4 | CDS | 82706589 | 82706724 | 82706589 | ID=Msa0708910-mRNA-1:cds;Parent=Msa0708910-mRNA-1 |
| chr4_4 | CDS | 82706386 | 82706438 | 82706386 | ID=Msa0708910-mRNA-1:cds;Parent=Msa0708910-mRNA-1 |
| chr4_4 | CDS | 82706122 | 82706212 | 82706122 | ID=Msa0708910-mRNA-1:cds;Parent=Msa0708910-mRNA-1 |
| chr4_4 | CDS | 82703709 | 82704734 | 82703709 | ID=Msa0708910-mRNA-1:cds;Parent=Msa0708910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
