Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708900 | XP_013468026.1 | 96.679 | 542 | 18 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1082 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708900 | A0A072VKV4 | 96.679 | 542 | 18 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1082 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024610 | Msa0708900 | 0.853822 | 1.853691e-61 | -8.615850e-47 |
| Msa0708900 | Msa0708910 | 0.981035 | 1.277707e-151 | -8.615850e-47 |
| Msa0708900 | Msa0806280 | 0.800610 | 1.329385e-48 | -8.615850e-47 |
| Msa0402240 | Msa0708900 | 0.930138 | 2.532526e-93 | -8.615850e-47 |
| Msa0402250 | Msa0708900 | 0.935359 | 9.608522e-97 | -8.615850e-47 |
| Msa0355170 | Msa0708900 | 0.917945 | 2.857763e-86 | -8.615850e-47 |
| Msa0355180 | Msa0708900 | 0.925869 | 1.021556e-90 | -8.615850e-47 |
| Msa0355190 | Msa0708900 | 0.945072 | 6.038079e-104 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708900 | MtrunA17_Chr1g0178981 | 96.679 | 542 | 18 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1082 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708900 | AT1G19485.1 | 35.378 | 489 | 204 | 16 | 62 | 542 | 8 | 392 | 1.89e-69 | 239 |
| Msa0708900 | AT1G19485.2 | 35.378 | 489 | 204 | 16 | 62 | 542 | 8 | 392 | 1.89e-69 | 239 |
Find 131 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATTGGTTCTCACAATT+TGG | 0.152126 | 4_4:+82692439 | None:intergenic |
| TGGTTCATCTTATCACAAAA+TGG | 0.221693 | 4_4:-82692881 | Msa0708900:CDS |
| TATGGTGTCTTCTAAATATC+AGG | 0.232318 | 4_4:-82692825 | Msa0708900:CDS |
| AATAATGGCCTACTTGTATC+TGG | 0.238881 | 4_4:+82692145 | None:intergenic |
| TGTATTCGCAGCAGCTTTCT+TGG | 0.251698 | 4_4:+82692303 | None:intergenic |
| ACCTTTCACAAAAGGGATTA+AGG | 0.259506 | 4_4:-82695881 | Msa0708900:five_prime_UTR |
| GTATGCAGAAGCAGCTTTCT+TGG | 0.268262 | 4_4:+82692231 | None:intergenic |
| ACTCTCTTGTTTGCAATTGC+AGG | 0.291928 | 4_4:+82695784 | None:intergenic |
| GCATTCTTTCCCTTTGTATT+CGG | 0.294913 | 4_4:+82692253 | None:intergenic |
| ATTAGGTTTACTTACGGAAT+TGG | 0.296469 | 4_4:-82694863 | Msa0708900:CDS |
| GGGCTATCTTGCTGTCTTGT+TGG | 0.306280 | 4_4:-82691927 | Msa0708900:CDS |
| GGCTATCTTGCTGTCTTGTT+GGG | 0.307911 | 4_4:-82691926 | Msa0708900:CDS |
| AATATCCATCTAAAAGCATT+AGG | 0.316447 | 4_4:-82694880 | Msa0708900:CDS |
| CAGGGTTTGAATATCAGTTC+TGG | 0.319518 | 4_4:-82695823 | Msa0708900:five_prime_UTR |
| AAAATGGGTGCCTCACTTAC+TGG | 0.325896 | 4_4:-82692865 | Msa0708900:CDS |
| ATTTCTCCAGATGTAGTTCC+TGG | 0.344586 | 4_4:-82692379 | Msa0708900:CDS |
| GAACAGTAAGAGGAACAAAT+TGG | 0.352749 | 4_4:+82692425 | None:intergenic |
| GAAATAAATTCAGCTGAATC+TGG | 0.353877 | 4_4:+82692397 | None:intergenic |
| TAAATAGTGTGGCAAAAGTT+AGG | 0.358408 | 4_4:+82695740 | None:intergenic |
| CTTGTTGGGCAATGGATCTC+TGG | 0.375077 | 4_4:-82691912 | Msa0708900:CDS |
| TTCTCACACTGAATCAATAA+TGG | 0.377014 | 4_4:+82692130 | None:intergenic |
| ATACTTGGATTCTTGAGGTT+TGG | 0.380840 | 4_4:+82694577 | None:intergenic |
| GCAGAGGTGCCGTGCAAATA+TGG | 0.381854 | 4_4:-82692843 | Msa0708900:CDS |
| GTAGGTTGGATATTAATCAT+AGG | 0.390058 | 4_4:-82692183 | Msa0708900:CDS |
| GGGCATTTACCTTTCACAAA+AGG | 0.395838 | 4_4:-82695889 | Msa0708900:five_prime_UTR |
| GCGTTGTTTATCAACAGAAC+AGG | 0.403768 | 4_4:-82695859 | Msa0708900:five_prime_UTR |
| GGCATTTACCTTTCACAAAA+GGG | 0.424513 | 4_4:-82695888 | Msa0708900:five_prime_UTR |
| TTAGGTTTACTTACGGAATT+GGG | 0.426191 | 4_4:-82694862 | Msa0708900:CDS |
| ATATCAAACAAAGAAACCTT+AGG | 0.426697 | 4_4:+82695583 | None:intergenic |
| GATGCTTGAGGTTCCAATAC+AGG | 0.430718 | 4_4:+82692079 | None:intergenic |
| AGGGTTTGAATATCAGTTCT+GGG | 0.431046 | 4_4:-82695822 | Msa0708900:five_prime_UTR |
| GCTGTTGCTGCTCATCCGCC+TGG | 0.432574 | 4_4:-82692901 | Msa0708900:CDS |
| CTTGCTGTCTTGTTGGGCAA+TGG | 0.437681 | 4_4:-82691920 | Msa0708900:CDS |
| GAACTGCCAGGAACTACATC+TGG | 0.439083 | 4_4:+82692373 | None:intergenic |
| GTTCTGTATGGGCATTAGAT+TGG | 0.440759 | 4_4:-82694362 | Msa0708900:CDS |
| ACCACATGGTAGCCCTGTAT+TGG | 0.442858 | 4_4:-82692092 | Msa0708900:CDS |
| GCATCTGGTAGTGTCTCAAA+TGG | 0.442876 | 4_4:-82692565 | Msa0708900:CDS |
| AGGTGGCATGGGATGTCAAA+TGG | 0.446867 | 4_4:-82691991 | Msa0708900:CDS |
| TCACATTTAATTGAACAATC+AGG | 0.451414 | 4_4:+82694318 | None:intergenic |
| TGCAAAAGGAGGAGCAACTT+GGG | 0.454385 | 4_4:-82694604 | Msa0708900:CDS |
| TCAGGCTCCCCATGCATCCT+AGG | 0.455090 | 4_4:+82694336 | None:intergenic |
| TTCATCTGCCACTGTTCCTA+AGG | 0.455578 | 4_4:-82694783 | Msa0708900:intron |
| CGAGAATTTCTTTGAAGACA+TGG | 0.460588 | 4_4:-82695554 | Msa0708900:CDS |
| AAAAGCATTAGGTTTACTTA+CGG | 0.463447 | 4_4:-82694869 | Msa0708900:CDS |
| CCACCTTTCCATTATGAGCT+AGG | 0.467563 | 4_4:+82692008 | None:intergenic |
| ATGCAAAAGGAGGAGCAACT+TGG | 0.467583 | 4_4:-82694605 | Msa0708900:CDS |
| TCCTCATGCAAGCATCGAAT+GGG | 0.467596 | 4_4:-82691947 | Msa0708900:CDS |
| GTGTCATGCCTAGCTCATAA+TGG | 0.467799 | 4_4:-82692016 | Msa0708900:CDS |
| ATCATATCTCCCCGGGAAGA+AGG | 0.467886 | 4_4:-82692785 | Msa0708900:CDS |
| GTCCACCTAGGTAAAGTAAA+GGG | 0.472023 | 4_4:-82695909 | Msa0708900:five_prime_UTR |
| GGTTCATCTTATCACAAAAT+GGG | 0.477171 | 4_4:-82692880 | Msa0708900:CDS |
| GGGCATTAGATTGGTGTCCT+AGG | 0.483270 | 4_4:-82694353 | Msa0708900:CDS |
| TCTGGAAGTTGAACAGTAAG+AGG | 0.486423 | 4_4:+82692415 | None:intergenic |
| CTCTTTGATATTAAATAGTG+TGG | 0.488495 | 4_4:+82695729 | None:intergenic |
| CTATCCACTGCTATTACAGT+TGG | 0.488965 | 4_4:+82692613 | None:intergenic |
| TCTTGTTGCAAGAAGTAGGT+TGG | 0.499166 | 4_4:-82692197 | Msa0708900:CDS |
| ATTGATTCAGTGTGAGAATG+AGG | 0.501894 | 4_4:-82692125 | Msa0708900:CDS |
| TGAATGTTGGAGGTTCTGTA+TGG | 0.503920 | 4_4:-82694374 | Msa0708900:CDS |
| ACAAATCGATAGAAATAAAG+AGG | 0.505265 | 4_4:-82692729 | Msa0708900:CDS |
| TGTCCACCTAGGTAAAGTAA+AGG | 0.506559 | 4_4:-82695910 | Msa0708900:five_prime_UTR |
| CTCATAATGGAAAGGTGGCA+TGG | 0.517043 | 4_4:-82692003 | Msa0708900:CDS |
| TATCAAACAAAGAAACCTTA+GGG | 0.521010 | 4_4:+82695584 | None:intergenic |
| TAGGTTGGATATTAATCATA+GGG | 0.524008 | 4_4:-82692182 | Msa0708900:CDS |
| AAACTCTTGTTGCAAGAAGT+AGG | 0.524383 | 4_4:-82692201 | Msa0708900:CDS |
| CTTAGGGTTAGCACCACTGC+TGG | 0.532612 | 4_4:+82695600 | None:intergenic |
| ATTGGTGTCCTAGGATGCAT+GGG | 0.532952 | 4_4:-82694344 | Msa0708900:CDS |
| TTCTTTCTAGGCCTTCCTCT+AGG | 0.533374 | 4_4:+82692706 | None:intergenic |
| TTCCTCATGCAAGCATCGAA+TGG | 0.535078 | 4_4:-82691948 | Msa0708900:CDS |
| GGGACCAAGTACATAGCATC+TGG | 0.536684 | 4_4:-82692580 | Msa0708900:CDS |
| ACTACCAGATGCTATGTACT+TGG | 0.537317 | 4_4:+82692576 | None:intergenic |
| GATTGGTGTCCTAGGATGCA+TGG | 0.541625 | 4_4:-82694345 | Msa0708900:CDS |
| CAGCAGTGGTGCTAACCCTA+AGG | 0.543146 | 4_4:-82695599 | Msa0708900:CDS |
| AAACCATACTTGGATTCTTG+AGG | 0.544459 | 4_4:+82694572 | None:intergenic |
| AGAGACTTTGTGATGAATGT+TGG | 0.551861 | 4_4:-82694387 | Msa0708900:CDS |
| AAAGCTGCTGCGAATACAAA+GGG | 0.552131 | 4_4:-82692298 | Msa0708900:CDS |
| AAAGCTGCTCCGAATACAAA+GGG | 0.553544 | 4_4:-82692262 | Msa0708900:CDS |
| ATAATGGCCTACTTGTATCT+GGG | 0.555195 | 4_4:+82692146 | None:intergenic |
| CATCTGGTAGTGTCTCAAAT+GGG | 0.555891 | 4_4:-82692564 | Msa0708900:CDS |
| TTAAATGTGCAGAGAATGGA+AGG | 0.560081 | 4_4:-82694909 | Msa0708900:intron |
| GCTACAGCGGCAAATGATGA+AGG | 0.560213 | 4_4:-82695637 | Msa0708900:CDS |
| ACACCATTGCTAAACTCTGT+GGG | 0.562879 | 4_4:-82695531 | Msa0708900:CDS |
| TTCCCCACAGAGTTTAGCAA+TGG | 0.564444 | 4_4:+82695528 | None:intergenic |
| TAGAAGACACCATATTTGCA+CGG | 0.566075 | 4_4:+82692834 | None:intergenic |
| GTTGTAGCCCAGATACAAGT+AGG | 0.566508 | 4_4:-82692153 | Msa0708900:CDS |
| CGTTGTTTATCAACAGAACA+GGG | 0.567059 | 4_4:-82695858 | Msa0708900:five_prime_UTR |
| GACTTTGTGATGAATGTTGG+AGG | 0.568156 | 4_4:-82694384 | Msa0708900:CDS |
| GAAAGCTGCTCCGAATACAA+AGG | 0.568270 | 4_4:-82692263 | Msa0708900:CDS |
| TGCTGATGATTCTGCTACAG+CGG | 0.574927 | 4_4:-82695650 | Msa0708900:CDS |
| AAATAAAGAGGCCTAGAGGA+AGG | 0.580422 | 4_4:-82692717 | Msa0708900:CDS |
| TGCCCTTTACTTTACCTAGG+TGG | 0.580871 | 4_4:+82695907 | None:intergenic |
| TGATGTTCATCAGAACTGCC+AGG | 0.583511 | 4_4:+82692361 | None:intergenic |
| GGTGCCTCACTTACTGGCAG+AGG | 0.584837 | 4_4:-82692859 | Msa0708900:CDS |
| TCATAATGGAAAGGTGGCAT+GGG | 0.586605 | 4_4:-82692002 | Msa0708900:CDS |
| AAGAAGTATCATATCTCCCC+GGG | 0.588430 | 4_4:-82692792 | Msa0708900:CDS |
| GAATCCAACTGTAATAGCAG+TGG | 0.589763 | 4_4:-82692617 | Msa0708900:CDS |
| GAAAGCTGCTGCGAATACAA+AGG | 0.590265 | 4_4:-82692299 | Msa0708900:CDS |
| CAGTGGATAGTACAAATTGT+GGG | 0.590541 | 4_4:-82692600 | Msa0708900:CDS |
| ATGGTGTCTTCTAAATATCA+GGG | 0.592032 | 4_4:-82692824 | Msa0708900:CDS |
| ATGCTTGAGGTTCCAATACA+GGG | 0.598484 | 4_4:+82692080 | None:intergenic |
| TTATTTGAAATTGTCCACCT+AGG | 0.601577 | 4_4:-82695921 | Msa0708900:five_prime_UTR |
| GCAAATGATGAAGGTGGTGG+TGG | 0.602662 | 4_4:-82695628 | Msa0708900:CDS |
| TCAGCATAATATGCAAAAGG+AGG | 0.605517 | 4_4:-82694615 | Msa0708900:intron |
| AAACAAGAGAGTAATGGAAG+AGG | 0.607256 | 4_4:-82695773 | Msa0708900:exon |
| GAAGAAGTATCATATCTCCC+CGG | 0.607569 | 4_4:-82692793 | Msa0708900:CDS |
| AAATGCCCTTTACTTTACCT+AGG | 0.608444 | 4_4:+82695904 | None:intergenic |
| GGCACCTCTGCCAGTAAGTG+AGG | 0.611285 | 4_4:+82692855 | None:intergenic |
| GACACCATTGCTAAACTCTG+TGG | 0.614594 | 4_4:-82695532 | Msa0708900:CDS |
| GAGGAATCAAGATTGCTAAG+AGG | 0.614969 | 4_4:+82691965 | None:intergenic |
| AATTGCAAACAAGAGAGTAA+TGG | 0.617423 | 4_4:-82695779 | Msa0708900:exon |
| CCTAGCTCATAATGGAAAGG+TGG | 0.620737 | 4_4:-82692008 | Msa0708900:CDS |
| CAGAACTGATATTCAAACCC+TGG | 0.624538 | 4_4:+82695824 | None:intergenic |
| GCAGTGGATAGTACAAATTG+TGG | 0.626003 | 4_4:-82692601 | Msa0708900:CDS |
| ATGCCTAGCTCATAATGGAA+AGG | 0.628963 | 4_4:-82692011 | Msa0708900:CDS |
| TGATTGTTCAATTAAATGTG+AGG | 0.630368 | 4_4:-82694316 | Msa0708900:intron |
| GCCCATTCGATGCTTGCATG+AGG | 0.635290 | 4_4:+82691946 | None:intergenic |
| GCTAGGCATGACACAACTCT+AGG | 0.640886 | 4_4:+82692025 | None:intergenic |
| GAATGTTGGAGGTTCTGTAT+GGG | 0.641333 | 4_4:-82694373 | Msa0708900:CDS |
| ATGGGACAAGTAGATGCTTG+AGG | 0.647867 | 4_4:+82692067 | None:intergenic |
| GCAAAAGGAGGAGCAACTTG+GGG | 0.648508 | 4_4:-82694603 | Msa0708900:CDS |
| ATAGAAATAAAGAGGCCTAG+AGG | 0.655432 | 4_4:-82692721 | Msa0708900:CDS |
| GCGGCAAATGATGAAGGTGG+TGG | 0.666480 | 4_4:-82695631 | Msa0708900:CDS |
| CACCATTGCTAAACTCTGTG+GGG | 0.668610 | 4_4:-82695530 | Msa0708900:CDS |
| GGTGGTGGTAGTACCAGCAG+TGG | 0.670189 | 4_4:-82695613 | Msa0708900:CDS |
| TGGCATGGGATGTCAAATGG+AGG | 0.678240 | 4_4:-82691988 | Msa0708900:CDS |
| GACTTGTACCTTAGGAACAG+TGG | 0.679559 | 4_4:+82694775 | None:intergenic |
| TCCAATACAGGGCTACCATG+TGG | 0.685481 | 4_4:+82692091 | None:intergenic |
| GAGGCAAATCATCAACCACA+TGG | 0.705993 | 4_4:-82692106 | Msa0708900:CDS |
| TTGGTGTCCTAGGATGCATG+GGG | 0.719461 | 4_4:-82694343 | Msa0708900:CDS |
| TTGTGATAAGATGAACCAGG+CGG | 0.737973 | 4_4:+82692886 | None:intergenic |
| ACAGCGGCAAATGATGAAGG+TGG | 0.745146 | 4_4:-82695634 | Msa0708900:CDS |
| ACAGTGGCAGATGAAAACTG+AGG | 0.800494 | 4_4:+82694791 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATTAGAGTAAAATAT+AGG | + | chr4_4:82693096-82693115 | None:intergenic | 10.0% |
| !!! | TAAGTATATATTTTGCTTTT+AGG | - | chr4_4:82693145-82693164 | Msa0708900:intron | 15.0% |
| !! | TAAAAGGATTTAGATTTAAA+TGG | - | chr4_4:82694231-82694250 | Msa0708900:intron | 15.0% |
| !! | TTTACTACATATATGAATAT+AGG | + | chr4_4:82694816-82694835 | None:intergenic | 15.0% |
| !! | TCTTCAAGTAAATATTTGAT+TGG | + | chr4_4:82692746-82692765 | None:intergenic | 20.0% |
| !! | AATCAAATATTTACTTGAAG+AGG | - | chr4_4:82692745-82692764 | Msa0708900:CDS | 20.0% |
| !! | ATCAAATATTTACTTGAAGA+GGG | - | chr4_4:82692746-82692765 | Msa0708900:CDS | 20.0% |
| !! | AACCAAAAAAAGAAATTAAG+GGG | + | chr4_4:82692909-82692928 | None:intergenic | 20.0% |
| !! | CAACCAAAAAAAGAAATTAA+GGG | + | chr4_4:82692910-82692929 | None:intergenic | 20.0% |
| !! | TCAACCAAAAAAAGAAATTA+AGG | + | chr4_4:82692911-82692930 | None:intergenic | 20.0% |
| !! | AAATTAGAGTAAAATATAGG+AGG | + | chr4_4:82693093-82693112 | None:intergenic | 20.0% |
| !! | TTTATTCAATGACATTTCTA+TGG | - | chr4_4:82693317-82693336 | Msa0708900:intron | 20.0% |
| !!! | ATATTGTTTTGTTACTTCTT+TGG | - | chr4_4:82693605-82693624 | Msa0708900:intron | 20.0% |
| !!! | TATTGTTTTGTTACTTCTTT+GGG | - | chr4_4:82693606-82693625 | Msa0708900:intron | 20.0% |
| !!! | AGATTTTATTTGAAGTTTGA+TGG | - | chr4_4:82693710-82693729 | Msa0708900:intron | 20.0% |
| !!! | TATTGTTCTTTTAAGAGTTA+AGG | - | chr4_4:82693769-82693788 | Msa0708900:intron | 20.0% |
| !!! | ATTGTTCTTTTAAGAGTTAA+GGG | - | chr4_4:82693770-82693789 | Msa0708900:intron | 20.0% |
| !! | TTCTTAAATTGTGTTGAATT+TGG | + | chr4_4:82693928-82693947 | None:intergenic | 20.0% |
| !!! | TCAACACAATTTAAGAATTT+TGG | - | chr4_4:82693931-82693950 | Msa0708900:intron | 20.0% |
| !!! | TTTCATTGTTATTTGTTTCA+TGG | + | chr4_4:82693959-82693978 | None:intergenic | 20.0% |
| !!! | AGCACATATTTTTGAAAAAA+TGG | - | chr4_4:82694134-82694153 | Msa0708900:intron | 20.0% |
| !!! | TTTTATTCCAAACTGTTAAA+AGG | - | chr4_4:82694215-82694234 | Msa0708900:intron | 20.0% |
| !! | TTTATCACTAGAAATGATTT+AGG | - | chr4_4:82694254-82694273 | Msa0708900:intron | 20.0% |
| !! | CATAATTAACAAAAGGATTT+AGG | + | chr4_4:82694643-82694662 | None:intergenic | 20.0% |
| !!! | AATCCTTTTGTTAATTATGA+TGG | - | chr4_4:82694644-82694663 | Msa0708900:intron | 20.0% |
| !! | TATCAAAATAGGTATATGTA+TGG | + | chr4_4:82694759-82694778 | None:intergenic | 20.0% |
| !! | TTACATACAAGAGTAAAAAA+AGG | - | chr4_4:82695333-82695352 | Msa0708900:intron | 20.0% |
| !!! | ACAACAATTTTCTAATACAA+AGG | - | chr4_4:82695508-82695527 | Msa0708900:CDS | 20.0% |
| !!! | CAACAATTTTCTAATACAAA+GGG | - | chr4_4:82695509-82695528 | Msa0708900:CDS | 20.0% |
| ! | CTCTTTGATATTAAATAGTG+TGG | + | chr4_4:82692117-82692136 | None:intergenic | 25.0% |
| ! | TATCAAACAAAGAAACCTTA+GGG | + | chr4_4:82692262-82692281 | None:intergenic | 25.0% |
| ! | ATATCAAACAAAGAAACCTT+AGG | + | chr4_4:82692263-82692282 | None:intergenic | 25.0% |
| ! | ATCATACCTTAAAAAAGTGA+CGG | + | chr4_4:82692393-82692412 | None:intergenic | 25.0% |
| ! | ATAATCATTGAATGACTAAG+TGG | - | chr4_4:82692701-82692720 | Msa0708900:CDS | 25.0% |
| !!! | AACCCCTTAATTTCTTTTTT+TGG | - | chr4_4:82692904-82692923 | Msa0708900:CDS | 25.0% |
| !!! | AATATCCATCTAAAAGCATT+AGG | - | chr4_4:82692963-82692982 | Msa0708900:intron | 25.0% |
| !!! | AAAAGCATTAGGTTTACTTA+CGG | - | chr4_4:82692974-82692993 | Msa0708900:intron | 25.0% |
| !! | TTTTCAGCATAATATGCAAA+AGG | - | chr4_4:82693225-82693244 | Msa0708900:intron | 25.0% |
| ! | AGTTAATATCAAACCATACT+TGG | + | chr4_4:82693284-82693303 | None:intergenic | 25.0% |
| !!! | GATATTAACTTATTTTGTCG+TGG | - | chr4_4:82693294-82693313 | Msa0708900:intron | 25.0% |
| ! | TCACATTTAATTGAACAATC+AGG | + | chr4_4:82693528-82693547 | None:intergenic | 25.0% |
| ! | TGATTGTTCAATTAAATGTG+AGG | - | chr4_4:82693527-82693546 | Msa0708900:intron | 25.0% |
| !! | TCTAAATCCTTTTAACAGTT+TGG | + | chr4_4:82694225-82694244 | None:intergenic | 25.0% |
| ! | CTAAATAGTATACACAATTG+CGG | - | chr4_4:82694391-82694410 | Msa0708900:intron | 25.0% |
| ! | AAAAAAAGTGAACGACAAAA+AGG | + | chr4_4:82694492-82694511 | None:intergenic | 25.0% |
| ! | TCTCCATCATAATTAACAAA+AGG | + | chr4_4:82694650-82694669 | None:intergenic | 25.0% |
| !!! | TACCTATTTTGATAGTTTTG+TGG | - | chr4_4:82694765-82694784 | Msa0708900:intron | 25.0% |
| ! | ACAAATCGATAGAAATAAAG+AGG | - | chr4_4:82695114-82695133 | Msa0708900:intron | 25.0% |
| !!! | CTTTTTCTCTTGTTTGTAAT+AGG | + | chr4_4:82695191-82695210 | None:intergenic | 25.0% |
| ! | ATTACAAACAAGAGAAAAAG+AGG | - | chr4_4:82695191-82695210 | Msa0708900:intron | 25.0% |
| !!! | ATTACAGTTGGATTCTTTTT+TGG | + | chr4_4:82695221-82695240 | None:intergenic | 25.0% |
| !! | CCATCTTTTGAATTCTTTTT+CGG | + | chr4_4:82695371-82695390 | None:intergenic | 25.0% |
| !! | TAGGTTGGATATTAATCATA+GGG | - | chr4_4:82695661-82695680 | Msa0708900:CDS | 25.0% |
| ! | TTATTTGAAATTGTCCACCT+AGG | - | chr4_4:82691922-82691941 | Msa0708900:CDS | 30.0% |
| AATTGCAAACAAGAGAGTAA+TGG | - | chr4_4:82692064-82692083 | Msa0708900:CDS | 30.0% | |
| TAAATAGTGTGGCAAAAGTT+AGG | + | chr4_4:82692106-82692125 | None:intergenic | 30.0% | |
| GAAAAAGAAGAAAAAGACGA+AGG | - | chr4_4:82692148-82692167 | Msa0708900:CDS | 30.0% | |
| !!! | TTTCTTCCGTCACTTTTTTA+AGG | - | chr4_4:82692384-82692403 | Msa0708900:CDS | 30.0% |
| GTTAATCTGTTGTGAAGAAA+TGG | - | chr4_4:82692456-82692475 | Msa0708900:CDS | 30.0% | |
| TTATAACCAACTCAAAGAGT+TGG | + | chr4_4:82692620-82692639 | None:intergenic | 30.0% | |
| !! | AACTCTTTGAGTTGGTTATA+AGG | - | chr4_4:82692619-82692638 | Msa0708900:CDS | 30.0% |
| GATTGGATAGACATAATTGT+AGG | + | chr4_4:82692729-82692748 | None:intergenic | 30.0% | |
| AATATTTACTTGAAGAGGGA+AGG | - | chr4_4:82692750-82692769 | Msa0708900:CDS | 30.0% | |
| ATATTTACTTGAAGAGGGAA+GGG | - | chr4_4:82692751-82692770 | Msa0708900:CDS | 30.0% | |
| AAAGAAATTAAGGGGTTGTT+TGG | + | chr4_4:82692901-82692920 | None:intergenic | 30.0% | |
| ! | GTAAACCTAATGCTTTTAGA+TGG | + | chr4_4:82692971-82692990 | None:intergenic | 30.0% |
| ATTAGGTTTACTTACGGAAT+TGG | - | chr4_4:82692980-82692999 | Msa0708900:intron | 30.0% | |
| TTAGGTTTACTTACGGAATT+GGG | - | chr4_4:82692981-82693000 | Msa0708900:intron | 30.0% | |
| CTCTAATTTAATTGTTTGCC+AGG | - | chr4_4:82693104-82693123 | Msa0708900:intron | 30.0% | |
| ATATACTATAACTTCATGCC+TGG | + | chr4_4:82693125-82693144 | None:intergenic | 30.0% | |
| ! | TCGCTGATTATTGTTTAACT+TGG | - | chr4_4:82693414-82693433 | Msa0708900:intron | 30.0% |
| !! | AGTCAATTCTGTCTTTTTCA+TGG | - | chr4_4:82693659-82693678 | Msa0708900:intron | 30.0% |
| !! | TTATTTGAAGTTTGATGGTG+AGG | - | chr4_4:82693715-82693734 | Msa0708900:intron | 30.0% |
| TAGCAGTAAAACATAGTGTA+CGG | - | chr4_4:82693838-82693857 | Msa0708900:intron | 30.0% | |
| TACGGCATATATTATAAGCA+AGG | - | chr4_4:82693856-82693875 | Msa0708900:intron | 30.0% | |
| ACGGCATATATTATAAGCAA+GGG | - | chr4_4:82693857-82693876 | Msa0708900:intron | 30.0% | |
| ACATAATTGTAGAATAGAGG+TGG | - | chr4_4:82693882-82693901 | Msa0708900:intron | 30.0% | |
| ATTAACCTAAAGGATTCAAG+TGG | - | chr4_4:82693988-82694007 | Msa0708900:intron | 30.0% | |
| TTAACCTAAAGGATTCAAGT+GGG | - | chr4_4:82693989-82694008 | Msa0708900:intron | 30.0% | |
| AATGCGTTAAAGAGAAAGTT+TGG | - | chr4_4:82694109-82694128 | Msa0708900:intron | 30.0% | |
| ATGCGTTAAAGAGAAAGTTT+GGG | - | chr4_4:82694110-82694129 | Msa0708900:intron | 30.0% | |
| AATAGGTATATGTATGGAGT+AGG | + | chr4_4:82694753-82694772 | None:intergenic | 30.0% | |
| GACCACAAAACTATCAAAAT+AGG | + | chr4_4:82694770-82694789 | None:intergenic | 30.0% | |
| TAAACCAAGTATCAGAAAGA+AGG | + | chr4_4:82694915-82694934 | None:intergenic | 30.0% | |
| ! | ATTTTGTGATAAGATGAACC+AGG | + | chr4_4:82694963-82694982 | None:intergenic | 30.0% |
| TGGTTCATCTTATCACAAAA+TGG | - | chr4_4:82694962-82694981 | Msa0708900:intron | 30.0% | |
| GGTTCATCTTATCACAAAAT+GGG | - | chr4_4:82694963-82694982 | Msa0708900:intron | 30.0% | |
| TATGGTGTCTTCTAAATATC+AGG | - | chr4_4:82695018-82695037 | Msa0708900:intron | 30.0% | |
| ATGGTGTCTTCTAAATATCA+GGG | - | chr4_4:82695019-82695038 | Msa0708900:intron | 30.0% | |
| ! | TTTTCAGTAGGATTCTTTCT+AGG | + | chr4_4:82695152-82695171 | None:intergenic | 30.0% |
| AAGAGTAAAAAAAGGCCTAA+AGG | - | chr4_4:82695341-82695360 | Msa0708900:intron | 30.0% | |
| CCGAAAAAGAATTCAAAAGA+TGG | - | chr4_4:82695368-82695387 | Msa0708900:intron | 30.0% | |
| ! | ACAAATTGGTTCTCACAATT+TGG | + | chr4_4:82695407-82695426 | None:intergenic | 30.0% |
| GAAATAAATTCAGCTGAATC+TGG | + | chr4_4:82695449-82695468 | None:intergenic | 30.0% | |
| ! | GTAGGTTGGATATTAATCAT+AGG | - | chr4_4:82695660-82695679 | Msa0708900:CDS | 30.0% |
| TTCTCACACTGAATCAATAA+TGG | + | chr4_4:82695716-82695735 | None:intergenic | 30.0% | |
| ! | AATGCTACATTTTGTGGAAT+GGG | + | chr4_4:82695797-82695816 | None:intergenic | 30.0% |
| AAATGCCCTTTACTTTACCT+AGG | + | chr4_4:82691942-82691961 | None:intergenic | 35.0% | |
| GGCATTTACCTTTCACAAAA+GGG | - | chr4_4:82691955-82691974 | Msa0708900:CDS | 35.0% | |
| ACCTTTCACAAAAGGGATTA+AGG | - | chr4_4:82691962-82691981 | Msa0708900:CDS | 35.0% | |
| CGTTGTTTATCAACAGAACA+GGG | - | chr4_4:82691985-82692004 | Msa0708900:CDS | 35.0% | |
| AGGGTTTGAATATCAGTTCT+GGG | - | chr4_4:82692021-82692040 | Msa0708900:CDS | 35.0% | |
| ! | AAACAAGAGAGTAATGGAAG+AGG | - | chr4_4:82692070-82692089 | Msa0708900:CDS | 35.0% |
| ! | CGAGAATTTCTTTGAAGACA+TGG | - | chr4_4:82692289-82692308 | Msa0708900:CDS | 35.0% |
| TGTTCTTGAGCAATACGATT+TGG | - | chr4_4:82692490-82692509 | Msa0708900:CDS | 35.0% | |
| ! | AGAGTTGGTTAGGATTGATT+AGG | + | chr4_4:82692605-82692624 | None:intergenic | 35.0% |
| TATGAACCGAATCTCTAAGT+TGG | - | chr4_4:82692818-82692837 | Msa0708900:CDS | 35.0% | |
| ATGAACCGAATCTCTAAGTT+GGG | - | chr4_4:82692819-82692838 | Msa0708900:CDS | 35.0% | |
| ACCATTAAATGTGCAGAGAA+TGG | - | chr4_4:82692930-82692949 | Msa0708900:intron | 35.0% | |
| TCCATTCTCTGCACATTTAA+TGG | + | chr4_4:82692934-82692953 | None:intergenic | 35.0% | |
| TTAAATGTGCAGAGAATGGA+AGG | - | chr4_4:82692934-82692953 | Msa0708900:intron | 35.0% | |
| TCAGCATAATATGCAAAAGG+AGG | - | chr4_4:82693228-82693247 | Msa0708900:intron | 35.0% | |
| ATACTTGGATTCTTGAGGTT+TGG | + | chr4_4:82693269-82693288 | None:intergenic | 35.0% | |
| AAACCTCAAGAATCCAAGTA+TGG | - | chr4_4:82693268-82693287 | Msa0708900:intron | 35.0% | |
| AAACCATACTTGGATTCTTG+AGG | + | chr4_4:82693274-82693293 | None:intergenic | 35.0% | |
| AACTTGGCTAAACACTTTGT+TGG | - | chr4_4:82693430-82693449 | Msa0708900:intron | 35.0% | |
| AGAGACTTTGTGATGAATGT+TGG | - | chr4_4:82693456-82693475 | Msa0708900:intron | 35.0% | |
| TGTGATGTTTCATACGTTGA+GGG | - | chr4_4:82693687-82693706 | Msa0708900:intron | 35.0% | |
| CTCTTAAAAGAACAATACGC+TGG | + | chr4_4:82693766-82693785 | None:intergenic | 35.0% | |
| CGGCATATATTATAAGCAAG+GGG | - | chr4_4:82693858-82693877 | Msa0708900:intron | 35.0% | |
| GGCACATAATTGTAGAATAG+AGG | - | chr4_4:82693879-82693898 | Msa0708900:intron | 35.0% | |
| GTGTTGAATTTGGTATGCTA+TGG | + | chr4_4:82693918-82693937 | None:intergenic | 35.0% | |
| ACAGAGCGAAATTAACCTAA+AGG | - | chr4_4:82693978-82693997 | Msa0708900:intron | 35.0% | |
| ! | GTAATTTTCGATCACAAAGC+AGG | + | chr4_4:82694036-82694055 | None:intergenic | 35.0% |
| AAATGGAAAAACACTGCCTT+AGG | - | chr4_4:82694151-82694170 | Msa0708900:intron | 35.0% | |
| GATATAGTACTATTGCTGAG+AGG | + | chr4_4:82694338-82694357 | None:intergenic | 35.0% | |
| CTATCAAATAGCGACTATAG+TGG | + | chr4_4:82694362-82694381 | None:intergenic | 35.0% | |
| GACATTTGGCATACAGAAAA+TGG | + | chr4_4:82694560-82694579 | None:intergenic | 35.0% | |
| ! | GTTAATTATGATGGAGACAC+TGG | - | chr4_4:82694653-82694672 | Msa0708900:intron | 35.0% |
| TTATTTCCTACTTCCAAGTC+TGG | + | chr4_4:82694859-82694878 | None:intergenic | 35.0% | |
| ATGACCTTCTTTCTGATACT+TGG | - | chr4_4:82694908-82694927 | Msa0708900:intron | 35.0% | |
| TAGAAGACACCATATTTGCA+CGG | + | chr4_4:82695012-82695031 | None:intergenic | 35.0% | |
| !!! | AGGTTTTTTTTCCTTCTTCC+CGG | + | chr4_4:82695072-82695091 | None:intergenic | 35.0% |
| !!! | TTTGTGCACGTGTCTTTTTT+AGG | + | chr4_4:82695092-82695111 | None:intergenic | 35.0% |
| ATAGAAATAAAGAGGCCTAG+AGG | - | chr4_4:82695122-82695141 | Msa0708900:intron | 35.0% | |
| !! | ATTGCTTCGTTGTTTTCAGT+AGG | + | chr4_4:82695164-82695183 | None:intergenic | 35.0% |
| CAGTGGATAGTACAAATTGT+GGG | - | chr4_4:82695243-82695262 | Msa0708900:intron | 35.0% | |
| !!! | TTCTTTTTCGGTCTTCCTTT+AGG | + | chr4_4:82695359-82695378 | None:intergenic | 35.0% |
| GAACAGTAAGAGGAACAAAT+TGG | + | chr4_4:82695421-82695440 | None:intergenic | 35.0% | |
| GCATTCTTTCCCTTTGTATT+CGG | + | chr4_4:82695521-82695540 | None:intergenic | 35.0% | |
| AAACTCTTGTTGCAAGAAGT+AGG | - | chr4_4:82695642-82695661 | Msa0708900:CDS | 35.0% | |
| ATAATGGCCTACTTGTATCT+GGG | + | chr4_4:82695700-82695719 | None:intergenic | 35.0% | |
| AATAATGGCCTACTTGTATC+TGG | + | chr4_4:82695701-82695720 | None:intergenic | 35.0% | |
| ! | ATTGATTCAGTGTGAGAATG+AGG | - | chr4_4:82695718-82695737 | Msa0708900:CDS | 35.0% |
| ! | CAATGCTACATTTTGTGGAA+TGG | + | chr4_4:82695798-82695817 | None:intergenic | 35.0% |
| TGTCCACCTAGGTAAAGTAA+AGG | - | chr4_4:82691933-82691952 | Msa0708900:CDS | 40.0% | |
| GTCCACCTAGGTAAAGTAAA+GGG | - | chr4_4:82691934-82691953 | Msa0708900:CDS | 40.0% | |
| GGGCATTTACCTTTCACAAA+AGG | - | chr4_4:82691954-82691973 | Msa0708900:CDS | 40.0% | |
| ! | GCCTTAATCCCTTTTGTGAA+AGG | + | chr4_4:82691966-82691985 | None:intergenic | 40.0% |
| GCGTTGTTTATCAACAGAAC+AGG | - | chr4_4:82691984-82692003 | Msa0708900:CDS | 40.0% | |
| CAGAACTGATATTCAAACCC+TGG | + | chr4_4:82692022-82692041 | None:intergenic | 40.0% | |
| CAGGGTTTGAATATCAGTTC+TGG | - | chr4_4:82692020-82692039 | Msa0708900:CDS | 40.0% | |
| ! | ACTCTCTTGTTTGCAATTGC+AGG | + | chr4_4:82692062-82692081 | None:intergenic | 40.0% |
| ACACCATTGCTAAACTCTGT+GGG | - | chr4_4:82692312-82692331 | Msa0708900:CDS | 40.0% | |
| ATGTATCAGCTATGATGCTC+TGG | - | chr4_4:82692530-82692549 | Msa0708900:CDS | 40.0% | |
| TCCTAACCAACTCTTTGAGT+TGG | - | chr4_4:82692611-82692630 | Msa0708900:CDS | 40.0% | |
| ! | ACCAACTCAAAGAGTTGGTT+AGG | + | chr4_4:82692615-82692634 | None:intergenic | 40.0% |
| AGGCAGTGCTAATCTATGTA+AGG | - | chr4_4:82692639-82692658 | Msa0708900:CDS | 40.0% | |
| CGAAACCCAACTTAGAGATT+CGG | + | chr4_4:82692827-82692846 | None:intergenic | 40.0% | |
| TATAGGAGGACTTGTACCTT+AGG | + | chr4_4:82693079-82693098 | None:intergenic | 40.0% | |
| GACTTTGTGATGAATGTTGG+AGG | - | chr4_4:82693459-82693478 | Msa0708900:intron | 40.0% | |
| TGAATGTTGGAGGTTCTGTA+TGG | - | chr4_4:82693469-82693488 | Msa0708900:intron | 40.0% | |
| GAATGTTGGAGGTTCTGTAT+GGG | - | chr4_4:82693470-82693489 | Msa0708900:intron | 40.0% | |
| GTTCTGTATGGGCATTAGAT+TGG | - | chr4_4:82693481-82693500 | Msa0708900:intron | 40.0% | |
| GTGTGATGTTTCATACGTTG+AGG | - | chr4_4:82693686-82693705 | Msa0708900:intron | 40.0% | |
| !! | TGAAGTTTGATGGTGAGGTA+AGG | - | chr4_4:82693720-82693739 | Msa0708900:intron | 40.0% |
| !! | GAAGTTTGATGGTGAGGTAA+GGG | - | chr4_4:82693721-82693740 | Msa0708900:intron | 40.0% |
| !! | AAGTTTGATGGTGAGGTAAG+GGG | - | chr4_4:82693722-82693741 | Msa0708900:intron | 40.0% |
| GCTACTTCTACTCACACATT+CGG | + | chr4_4:82693822-82693841 | None:intergenic | 40.0% | |
| ATACATGTCCAAACCACCTA+AGG | + | chr4_4:82694170-82694189 | None:intergenic | 40.0% | |
| ! | TGGTTTGGACATGTATTGAG+AGG | - | chr4_4:82694174-82694193 | Msa0708900:intron | 40.0% |
| GTGTTGTCAATCTCAGATAG+TGG | - | chr4_4:82694300-82694319 | Msa0708900:intron | 40.0% | |
| ! | CACTATAACGTGGTGGAATT+TGG | + | chr4_4:82694422-82694441 | None:intergenic | 40.0% |
| CAAATTCCACCACGTTATAG+TGG | - | chr4_4:82694420-82694439 | Msa0708900:intron | 40.0% | |
| GATGCTATACCACTATAACG+TGG | + | chr4_4:82694432-82694451 | None:intergenic | 40.0% | |
| AAGGAATTACCCACATCACA+GGG | + | chr4_4:82694473-82694492 | None:intergenic | 40.0% | |
| AAAGGAATTACCCACATCAC+AGG | + | chr4_4:82694474-82694493 | None:intergenic | 40.0% | |
| TTGGCATACAGAAAATGGTG+AGG | + | chr4_4:82694555-82694574 | None:intergenic | 40.0% | |
| ! | CATGGTGTCAACTAGCTATT+AGG | + | chr4_4:82694600-82694619 | None:intergenic | 40.0% |
| CACCATGTTAAATTACCACC+TGG | - | chr4_4:82694613-82694632 | Msa0708900:CDS | 40.0% | |
| AGCCAGGTGGTAATTTAACA+TGG | + | chr4_4:82694618-82694637 | None:intergenic | 40.0% | |
| CAAAAGGATTTAGGTAAGCC+AGG | + | chr4_4:82694634-82694653 | None:intergenic | 40.0% | |
| ACTTACCTTTGTTCCAGACT+TGG | - | chr4_4:82694843-82694862 | Msa0708900:CDS | 40.0% | |
| ! | TACTTCCAAGTCTGGAACAA+AGG | + | chr4_4:82694851-82694870 | None:intergenic | 40.0% |
| TTTGTTCCAGACTTGGAAGT+AGG | - | chr4_4:82694850-82694869 | Msa0708900:CDS | 40.0% | |
| TTGTGATAAGATGAACCAGG+CGG | + | chr4_4:82694960-82694979 | None:intergenic | 40.0% | |
| !! | GAAGAAGTATCATATCTCCC+CGG | - | chr4_4:82695050-82695069 | Msa0708900:intron | 40.0% |
| !! | AAGAAGTATCATATCTCCCC+GGG | - | chr4_4:82695051-82695070 | Msa0708900:intron | 40.0% |
| !!! | GTTTTTTTTCCTTCTTCCCG+GGG | + | chr4_4:82695070-82695089 | None:intergenic | 40.0% |
| !!! | GGTTTTTTTTCCTTCTTCCC+GGG | + | chr4_4:82695071-82695090 | None:intergenic | 40.0% |
| AAATAAAGAGGCCTAGAGGA+AGG | - | chr4_4:82695126-82695145 | Msa0708900:intron | 40.0% | |
| GAATCCAACTGTAATAGCAG+TGG | - | chr4_4:82695226-82695245 | Msa0708900:intron | 40.0% | |
| CTATCCACTGCTATTACAGT+TGG | + | chr4_4:82695233-82695252 | None:intergenic | 40.0% | |
| GCAGTGGATAGTACAAATTG+TGG | - | chr4_4:82695242-82695261 | Msa0708900:intron | 40.0% | |
| ACTACCAGATGCTATGTACT+TGG | + | chr4_4:82695270-82695289 | None:intergenic | 40.0% | |
| ! | CATCTGGTAGTGTCTCAAAT+GGG | - | chr4_4:82695279-82695298 | Msa0708900:intron | 40.0% |
| TCTGGAAGTTGAACAGTAAG+AGG | + | chr4_4:82695431-82695450 | None:intergenic | 40.0% | |
| ATTTCTCCAGATGTAGTTCC+TGG | - | chr4_4:82695464-82695483 | Msa0708900:CDS | 40.0% | |
| AAAGCTGCTGCGAATACAAA+GGG | - | chr4_4:82695545-82695564 | Msa0708900:CDS | 40.0% | |
| AAAGCTGCTCCGAATACAAA+GGG | - | chr4_4:82695581-82695600 | Msa0708900:CDS | 40.0% | |
| TCTTGTTGCAAGAAGTAGGT+TGG | - | chr4_4:82695646-82695665 | Msa0708900:CDS | 40.0% | |
| ATGCTTGAGGTTCCAATACA+GGG | + | chr4_4:82695766-82695785 | None:intergenic | 40.0% | |
| ! | CTAGGCAATGCTACATTTTG+TGG | + | chr4_4:82695803-82695822 | None:intergenic | 40.0% |
| ! | ATGCCTAGCTCATAATGGAA+AGG | - | chr4_4:82695832-82695851 | Msa0708900:five_prime_UTR | 40.0% |
| ! | TCATAATGGAAAGGTGGCAT+GGG | - | chr4_4:82695841-82695860 | Msa0708900:five_prime_UTR | 40.0% |
| GAGGAATCAAGATTGCTAAG+AGG | + | chr4_4:82695881-82695900 | None:intergenic | 40.0% | |
| TGCCCTTTACTTTACCTAGG+TGG | + | chr4_4:82691939-82691958 | None:intergenic | 45.0% | |
| !!! | AACAGGGTTTTAGCTTGTCC+AGG | - | chr4_4:82692001-82692020 | Msa0708900:CDS | 45.0% |
| !!! | ACAGGGTTTTAGCTTGTCCA+GGG | - | chr4_4:82692002-82692021 | Msa0708900:CDS | 45.0% |
| TGCTGATGATTCTGCTACAG+CGG | - | chr4_4:82692193-82692212 | Msa0708900:CDS | 45.0% | |
| GACACCATTGCTAAACTCTG+TGG | - | chr4_4:82692311-82692330 | Msa0708900:CDS | 45.0% | |
| CACCATTGCTAAACTCTGTG+GGG | - | chr4_4:82692313-82692332 | Msa0708900:CDS | 45.0% | |
| TTCCCCACAGAGTTTAGCAA+TGG | + | chr4_4:82692318-82692337 | None:intergenic | 45.0% | |
| GGCGATAGTGATACAAACTG+AGG | + | chr4_4:82692584-82692603 | None:intergenic | 45.0% | |
| TTGAAGAGGGAAGGGAAAGT+TGG | - | chr4_4:82692759-82692778 | Msa0708900:CDS | 45.0% | |
| ACAGTGGCAGATGAAAACTG+AGG | + | chr4_4:82693055-82693074 | None:intergenic | 45.0% | |
| TTCATCTGCCACTGTTCCTA+AGG | - | chr4_4:82693060-82693079 | Msa0708900:intron | 45.0% | |
| GACTTGTACCTTAGGAACAG+TGG | + | chr4_4:82693071-82693090 | None:intergenic | 45.0% | |
| ATGCAAAAGGAGGAGCAACT+TGG | - | chr4_4:82693238-82693257 | Msa0708900:intron | 45.0% | |
| TGCAAAAGGAGGAGCAACTT+GGG | - | chr4_4:82693239-82693258 | Msa0708900:intron | 45.0% | |
| ! | ATTGGTGTCCTAGGATGCAT+GGG | - | chr4_4:82693499-82693518 | Msa0708900:intron | 45.0% |
| ! | GGTAAGGGGCACATAGTATA+TGG | - | chr4_4:82693736-82693755 | Msa0708900:intron | 45.0% |
| CTCACCCACTTGAATCCTTT+AGG | + | chr4_4:82693996-82694015 | None:intergenic | 45.0% | |
| TTCAAGTGGGTGAGATGCAA+AGG | - | chr4_4:82694002-82694021 | Msa0708900:intron | 45.0% | |
| TCAAGTGGGTGAGATGCAAA+GGG | - | chr4_4:82694003-82694022 | Msa0708900:intron | 45.0% | |
| TGGAAAAACACTGCCTTAGG+TGG | - | chr4_4:82694154-82694173 | Msa0708900:intron | 45.0% | |
| AAACACTGCCTTAGGTGGTT+TGG | - | chr4_4:82694159-82694178 | Msa0708900:intron | 45.0% | |
| GCTATACCACTATAACGTGG+TGG | + | chr4_4:82694429-82694448 | None:intergenic | 45.0% | |
| TGCTATTATCCCCTGTGATG+TGG | - | chr4_4:82694460-82694479 | Msa0708900:intron | 45.0% | |
| GCTATTATCCCCTGTGATGT+GGG | - | chr4_4:82694461-82694480 | Msa0708900:intron | 45.0% | |
| AGGAATTACCCACATCACAG+GGG | + | chr4_4:82694472-82694491 | None:intergenic | 45.0% | |
| ATGCCAAATGTCAGATGCCA+TGG | - | chr4_4:82694568-82694587 | Msa0708900:intron | 45.0% | |
| AGTCCATGGCATCTGACATT+TGG | + | chr4_4:82694574-82694593 | None:intergenic | 45.0% | |
| AATGTCAGATGCCATGGACT+CGG | - | chr4_4:82694574-82694593 | Msa0708900:intron | 45.0% | |
| AAGGATTTAGGTAAGCCAGG+TGG | + | chr4_4:82694631-82694650 | None:intergenic | 45.0% | |
| AAAATGGGTGCCTCACTTAC+TGG | - | chr4_4:82694978-82694997 | Msa0708900:intron | 45.0% | |
| TTCTTTCTAGGCCTTCCTCT+AGG | + | chr4_4:82695140-82695159 | None:intergenic | 45.0% | |
| ! | GCATCTGGTAGTGTCTCAAA+TGG | - | chr4_4:82695278-82695297 | Msa0708900:intron | 45.0% |
| TGATGTTCATCAGAACTGCC+AGG | + | chr4_4:82695485-82695504 | None:intergenic | 45.0% | |
| TGTATTCGCAGCAGCTTTCT+TGG | + | chr4_4:82695543-82695562 | None:intergenic | 45.0% | |
| GAAAGCTGCTGCGAATACAA+AGG | - | chr4_4:82695544-82695563 | Msa0708900:CDS | 45.0% | |
| GAAAGCTGCTCCGAATACAA+AGG | - | chr4_4:82695580-82695599 | Msa0708900:CDS | 45.0% | |
| GTATGCAGAAGCAGCTTTCT+TGG | + | chr4_4:82695615-82695634 | None:intergenic | 45.0% | |
| GTTGTAGCCCAGATACAAGT+AGG | - | chr4_4:82695690-82695709 | Msa0708900:CDS | 45.0% | |
| GAGGCAAATCATCAACCACA+TGG | - | chr4_4:82695737-82695756 | Msa0708900:CDS | 45.0% | |
| GATGCTTGAGGTTCCAATAC+AGG | + | chr4_4:82695767-82695786 | None:intergenic | 45.0% | |
| ATGGGACAAGTAGATGCTTG+AGG | + | chr4_4:82695779-82695798 | None:intergenic | 45.0% | |
| GTGTCATGCCTAGCTCATAA+TGG | - | chr4_4:82695827-82695846 | Msa0708900:five_prime_UTR | 45.0% | |
| CCACCTTTCCATTATGAGCT+AGG | + | chr4_4:82695838-82695857 | None:intergenic | 45.0% | |
| ! | CCTAGCTCATAATGGAAAGG+TGG | - | chr4_4:82695835-82695854 | Msa0708900:five_prime_UTR | 45.0% |
| ! | CTCATAATGGAAAGGTGGCA+TGG | - | chr4_4:82695840-82695859 | Msa0708900:five_prime_UTR | 45.0% |
| !! | TTCCTCATGCAAGCATCGAA+TGG | - | chr4_4:82695895-82695914 | Msa0708900:five_prime_UTR | 45.0% |
| !! | TCCTCATGCAAGCATCGAAT+GGG | - | chr4_4:82695896-82695915 | Msa0708900:five_prime_UTR | 45.0% |
| ! | GGCTATCTTGCTGTCTTGTT+GGG | - | chr4_4:82695917-82695936 | Msa0708900:five_prime_UTR | 45.0% |
| GCTACAGCGGCAAATGATGA+AGG | - | chr4_4:82692206-82692225 | Msa0708900:CDS | 50.0% | |
| ACAGCGGCAAATGATGAAGG+TGG | - | chr4_4:82692209-82692228 | Msa0708900:CDS | 50.0% | |
| ! | GCAAATGATGAAGGTGGTGG+TGG | - | chr4_4:82692215-82692234 | Msa0708900:CDS | 50.0% |
| GCAAAAGGAGGAGCAACTTG+GGG | - | chr4_4:82693240-82693259 | Msa0708900:intron | 50.0% | |
| ! | GGGCATTAGATTGGTGTCCT+AGG | - | chr4_4:82693490-82693509 | Msa0708900:intron | 50.0% |
| ! | GATTGGTGTCCTAGGATGCA+TGG | - | chr4_4:82693498-82693517 | Msa0708900:intron | 50.0% |
| ! | TTGGTGTCCTAGGATGCATG+GGG | - | chr4_4:82693500-82693519 | Msa0708900:intron | 50.0% |
| CAAGTGGGTGAGATGCAAAG+GGG | - | chr4_4:82694004-82694023 | Msa0708900:intron | 50.0% | |
| TAGCTATTAGGCCGAGTCCA+TGG | + | chr4_4:82694588-82694607 | None:intergenic | 50.0% | |
| ATCATATCTCCCCGGGAAGA+AGG | - | chr4_4:82695058-82695077 | Msa0708900:intron | 50.0% | |
| GGGACCAAGTACATAGCATC+TGG | - | chr4_4:82695263-82695282 | Msa0708900:intron | 50.0% | |
| GAACTGCCAGGAACTACATC+TGG | + | chr4_4:82695473-82695492 | None:intergenic | 50.0% | |
| ACCACATGGTAGCCCTGTAT+TGG | - | chr4_4:82695751-82695770 | Msa0708900:CDS | 50.0% | |
| TCCAATACAGGGCTACCATG+TGG | + | chr4_4:82695755-82695774 | None:intergenic | 50.0% | |
| GCTAGGCATGACACAACTCT+AGG | + | chr4_4:82695821-82695840 | None:intergenic | 50.0% | |
| AGGTGGCATGGGATGTCAAA+TGG | - | chr4_4:82695852-82695871 | Msa0708900:five_prime_UTR | 50.0% | |
| TGGCATGGGATGTCAAATGG+AGG | - | chr4_4:82695855-82695874 | Msa0708900:five_prime_UTR | 50.0% | |
| ! | GGGCTATCTTGCTGTCTTGT+TGG | - | chr4_4:82695916-82695935 | Msa0708900:five_prime_UTR | 50.0% |
| ! | CTTGCTGTCTTGTTGGGCAA+TGG | - | chr4_4:82695923-82695942 | Msa0708900:five_prime_UTR | 50.0% |
| CTTGTTGGGCAATGGATCTC+TGG | - | chr4_4:82695931-82695950 | Msa0708900:five_prime_UTR | 50.0% | |
| GCGGCAAATGATGAAGGTGG+TGG | - | chr4_4:82692212-82692231 | Msa0708900:CDS | 55.0% | |
| ! | CTTAGGGTTAGCACCACTGC+TGG | + | chr4_4:82692246-82692265 | None:intergenic | 55.0% |
| ! | CAGCAGTGGTGCTAACCCTA+AGG | - | chr4_4:82692244-82692263 | Msa0708900:CDS | 55.0% |
| !! | GCAGAGGTGCCGTGCAAATA+TGG | - | chr4_4:82695000-82695019 | Msa0708900:intron | 55.0% |
| GCCCATTCGATGCTTGCATG+AGG | + | chr4_4:82695900-82695919 | None:intergenic | 55.0% | |
| ! | GGTGGTGGTAGTACCAGCAG+TGG | - | chr4_4:82692230-82692249 | Msa0708900:CDS | 60.0% |
| TCAGGCTCCCCATGCATCCT+AGG | + | chr4_4:82693510-82693529 | None:intergenic | 60.0% | |
| GGTGCCTCACTTACTGGCAG+AGG | - | chr4_4:82694984-82695003 | Msa0708900:intron | 60.0% | |
| GGCACCTCTGCCAGTAAGTG+AGG | + | chr4_4:82694991-82695010 | None:intergenic | 60.0% | |
| GCTGTTGCTGCTCATCCGCC+TGG | - | chr4_4:82694942-82694961 | Msa0708900:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 82691904 | 82695961 | 82691904 | ID=Msa0708900;Name=Msa0708900 |
| chr4_4 | mRNA | 82691904 | 82695961 | 82691904 | ID=Msa0708900-mRNA-1;Parent=Msa0708900;Name=Msa0708900-mRNA-1;_AED=0.27;_eAED=0.27;_QI=179|1|0.8|1|1|1|5|0|542 |
| chr4_4 | exon | 82691904 | 82692929 | 82691904 | ID=Msa0708900-mRNA-1:exon:27289;Parent=Msa0708900-mRNA-1 |
| chr4_4 | exon | 82694317 | 82694407 | 82694317 | ID=Msa0708900-mRNA-1:exon:27288;Parent=Msa0708900-mRNA-1 |
| chr4_4 | exon | 82694581 | 82694633 | 82694581 | ID=Msa0708900-mRNA-1:exon:27287;Parent=Msa0708900-mRNA-1 |
| chr4_4 | exon | 82694784 | 82694919 | 82694784 | ID=Msa0708900-mRNA-1:exon:27286;Parent=Msa0708900-mRNA-1 |
| chr4_4 | exon | 82695460 | 82695961 | 82695460 | ID=Msa0708900-mRNA-1:exon:27285;Parent=Msa0708900-mRNA-1 |
| chr4_4 | five_prime_UTR | 82695783 | 82695961 | 82695783 | ID=Msa0708900-mRNA-1:five_prime_utr;Parent=Msa0708900-mRNA-1 |
| chr4_4 | CDS | 82695460 | 82695782 | 82695460 | ID=Msa0708900-mRNA-1:cds;Parent=Msa0708900-mRNA-1 |
| chr4_4 | CDS | 82694784 | 82694919 | 82694784 | ID=Msa0708900-mRNA-1:cds;Parent=Msa0708900-mRNA-1 |
| chr4_4 | CDS | 82694581 | 82694633 | 82694581 | ID=Msa0708900-mRNA-1:cds;Parent=Msa0708900-mRNA-1 |
| chr4_4 | CDS | 82694317 | 82694407 | 82694317 | ID=Msa0708900-mRNA-1:cds;Parent=Msa0708900-mRNA-1 |
| chr4_4 | CDS | 82691904 | 82692929 | 82691904 | ID=Msa0708900-mRNA-1:cds;Parent=Msa0708900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
