Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402250 | XP_013468026.1 | 96.679 | 542 | 18 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1082 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402250 | A0A072VKV4 | 96.679 | 542 | 18 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1082 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024610 | Msa0402250 | 0.855693 | 5.316949e-62 | -8.615850e-47 |
| Msa0115540 | Msa0402250 | 0.807752 | 4.334616e-50 | -8.615850e-47 |
| Msa0191290 | Msa0402250 | 0.800570 | 1.354628e-48 | -8.615850e-47 |
| Msa0204770 | Msa0402250 | 0.806989 | 6.290689e-50 | -8.615850e-47 |
| Msa0402240 | Msa0402250 | 0.988836 | 1.313443e-175 | -8.615850e-47 |
| Msa0402250 | Msa0708900 | 0.935359 | 9.608522e-97 | -8.615850e-47 |
| Msa0402250 | Msa0708910 | 0.926842 | 2.687679e-91 | -8.615850e-47 |
| Msa0402250 | Msa0806260 | 0.805790 | 1.125819e-49 | -8.615850e-47 |
| Msa0402250 | Msa0806270 | 0.813988 | 1.936465e-51 | -8.615850e-47 |
| Msa0402250 | Msa0806280 | 0.805309 | 1.420366e-49 | -8.615850e-47 |
| Msa0402250 | Msa0829510 | 0.805947 | 1.043866e-49 | -8.615850e-47 |
| Msa0355170 | Msa0402250 | 0.957650 | 1.626434e-115 | -8.615850e-47 |
| Msa0355180 | Msa0402250 | 0.968396 | 1.282967e-128 | -8.615850e-47 |
| Msa0355190 | Msa0402250 | 0.981019 | 1.399664e-151 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402250 | MtrunA17_Chr1g0178981 | 96.679 | 542 | 18 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1082 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402250 | AT1G19485.1 | 35.378 | 489 | 204 | 16 | 62 | 542 | 8 | 392 | 1.89e-69 | 239 |
| Msa0402250 | AT1G19485.2 | 35.378 | 489 | 204 | 16 | 62 | 542 | 8 | 392 | 1.89e-69 | 239 |
Find 131 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATTGGTTCTCACAATT+TGG | 0.152126 | 3_2:-30189266 | None:intergenic |
| TGGTTCATCTTATCACAAAA+TGG | 0.221693 | 3_2:+30188824 | Msa0402250:CDS |
| TATGGTGTCTTCTAAATATC+AGG | 0.232318 | 3_2:+30188880 | Msa0402250:CDS |
| AATAATGGCCTACTTGTATC+TGG | 0.238881 | 3_2:-30189560 | None:intergenic |
| TGTATTCGCAGCAGCTTTCT+TGG | 0.251698 | 3_2:-30189402 | None:intergenic |
| ACCTTTCACAAAAGGGATTA+AGG | 0.259506 | 3_2:+30185824 | Msa0402250:five_prime_UTR |
| GTATGCAGAAGCAGCTTTCT+TGG | 0.268262 | 3_2:-30189474 | None:intergenic |
| ACTCTCTTGTTTGCAATTGC+AGG | 0.291928 | 3_2:-30185921 | None:intergenic |
| GCATTCTTTCCCTTTGTATT+CGG | 0.294913 | 3_2:-30189452 | None:intergenic |
| ATTAGGTTTACTTACGGAAT+TGG | 0.296469 | 3_2:+30186842 | Msa0402250:CDS |
| GGGCTATCTTGCTGTCTTGT+TGG | 0.306280 | 3_2:+30189778 | Msa0402250:CDS |
| GGCTATCTTGCTGTCTTGTT+GGG | 0.307911 | 3_2:+30189779 | Msa0402250:CDS |
| AATATCCATCTAAAAGCATT+AGG | 0.316447 | 3_2:+30186825 | Msa0402250:CDS |
| CAGGGTTTGAATATCAGTTC+TGG | 0.319518 | 3_2:+30185882 | Msa0402250:five_prime_UTR |
| AAAATGGGTGCCTCACTTAC+TGG | 0.325896 | 3_2:+30188840 | Msa0402250:CDS |
| ATTTCTCCAGATGTAGTTCC+TGG | 0.344586 | 3_2:+30189326 | Msa0402250:CDS |
| GAACAGTAAGAGGAACAAAT+TGG | 0.352749 | 3_2:-30189280 | None:intergenic |
| GAAATAAATTCAGCTGAATC+TGG | 0.353877 | 3_2:-30189308 | None:intergenic |
| TAAATAGTGTGGCAAAAGTT+AGG | 0.358408 | 3_2:-30185965 | None:intergenic |
| CTTGTTGGGCAATGGATCTC+TGG | 0.375077 | 3_2:+30189793 | Msa0402250:CDS |
| TTCTCACACTGAATCAATAA+TGG | 0.377014 | 3_2:-30189575 | None:intergenic |
| ATACTTGGATTCTTGAGGTT+TGG | 0.380840 | 3_2:-30187128 | None:intergenic |
| GCAGAGGTGCCGTGCAAATA+TGG | 0.381854 | 3_2:+30188862 | Msa0402250:CDS |
| GTAGGTTGGATATTAATCAT+AGG | 0.390058 | 3_2:+30189522 | Msa0402250:CDS |
| GGGCATTTACCTTTCACAAA+AGG | 0.395838 | 3_2:+30185816 | Msa0402250:five_prime_UTR |
| GCGTTGTTTATCAACAGAAC+AGG | 0.403768 | 3_2:+30185846 | Msa0402250:five_prime_UTR |
| GGCATTTACCTTTCACAAAA+GGG | 0.424513 | 3_2:+30185817 | Msa0402250:five_prime_UTR |
| TTAGGTTTACTTACGGAATT+GGG | 0.426191 | 3_2:+30186843 | Msa0402250:CDS |
| ATATCAAACAAAGAAACCTT+AGG | 0.426697 | 3_2:-30186122 | None:intergenic |
| GATGCTTGAGGTTCCAATAC+AGG | 0.430718 | 3_2:-30189626 | None:intergenic |
| AGGGTTTGAATATCAGTTCT+GGG | 0.431046 | 3_2:+30185883 | Msa0402250:five_prime_UTR |
| GCTGTTGCTGCTCATCCGCC+TGG | 0.432574 | 3_2:+30188804 | Msa0402250:CDS |
| CTTGCTGTCTTGTTGGGCAA+TGG | 0.437681 | 3_2:+30189785 | Msa0402250:CDS |
| GAACTGCCAGGAACTACATC+TGG | 0.439083 | 3_2:-30189332 | None:intergenic |
| GTTCTGTATGGGCATTAGAT+TGG | 0.440759 | 3_2:+30187343 | Msa0402250:CDS |
| ACCACATGGTAGCCCTGTAT+TGG | 0.442858 | 3_2:+30189613 | Msa0402250:CDS |
| GCATCTGGTAGTGTCTCAAA+TGG | 0.442876 | 3_2:+30189140 | Msa0402250:CDS |
| AGGTGGCATGGGATGTCAAA+TGG | 0.446867 | 3_2:+30189714 | Msa0402250:CDS |
| TCACATTTAATTGAACAATC+AGG | 0.451414 | 3_2:-30187387 | None:intergenic |
| TGCAAAAGGAGGAGCAACTT+GGG | 0.454385 | 3_2:+30187101 | Msa0402250:CDS |
| TCAGGCTCCCCATGCATCCT+AGG | 0.455090 | 3_2:-30187369 | None:intergenic |
| TTCATCTGCCACTGTTCCTA+AGG | 0.455578 | 3_2:+30186922 | Msa0402250:CDS |
| CGAGAATTTCTTTGAAGACA+TGG | 0.460588 | 3_2:+30186151 | Msa0402250:CDS |
| AAAAGCATTAGGTTTACTTA+CGG | 0.463447 | 3_2:+30186836 | Msa0402250:CDS |
| CCACCTTTCCATTATGAGCT+AGG | 0.467563 | 3_2:-30189697 | None:intergenic |
| ATGCAAAAGGAGGAGCAACT+TGG | 0.467583 | 3_2:+30187100 | Msa0402250:CDS |
| TCCTCATGCAAGCATCGAAT+GGG | 0.467596 | 3_2:+30189758 | Msa0402250:CDS |
| GTGTCATGCCTAGCTCATAA+TGG | 0.467799 | 3_2:+30189689 | Msa0402250:CDS |
| ATCATATCTCCCCGGGAAGA+AGG | 0.467886 | 3_2:+30188920 | Msa0402250:CDS |
| GTCCACCTAGGTAAAGTAAA+GGG | 0.472023 | 3_2:+30185796 | Msa0402250:five_prime_UTR |
| GGTTCATCTTATCACAAAAT+GGG | 0.477171 | 3_2:+30188825 | Msa0402250:CDS |
| GGGCATTAGATTGGTGTCCT+AGG | 0.483270 | 3_2:+30187352 | Msa0402250:CDS |
| TCTGGAAGTTGAACAGTAAG+AGG | 0.486423 | 3_2:-30189290 | None:intergenic |
| CTCTTTGATATTAAATAGTG+TGG | 0.488495 | 3_2:-30185976 | None:intergenic |
| CTATCCACTGCTATTACAGT+TGG | 0.488965 | 3_2:-30189092 | None:intergenic |
| TCTTGTTGCAAGAAGTAGGT+TGG | 0.499166 | 3_2:+30189508 | Msa0402250:CDS |
| ATTGATTCAGTGTGAGAATG+AGG | 0.501894 | 3_2:+30189580 | Msa0402250:CDS |
| TGAATGTTGGAGGTTCTGTA+TGG | 0.503920 | 3_2:+30187331 | Msa0402250:CDS |
| ACAAATCGATAGAAATAAAG+AGG | 0.505265 | 3_2:+30188976 | Msa0402250:CDS |
| TGTCCACCTAGGTAAAGTAA+AGG | 0.506559 | 3_2:+30185795 | Msa0402250:five_prime_UTR |
| CTCATAATGGAAAGGTGGCA+TGG | 0.517043 | 3_2:+30189702 | Msa0402250:CDS |
| TATCAAACAAAGAAACCTTA+GGG | 0.521010 | 3_2:-30186121 | None:intergenic |
| TAGGTTGGATATTAATCATA+GGG | 0.524008 | 3_2:+30189523 | Msa0402250:CDS |
| AAACTCTTGTTGCAAGAAGT+AGG | 0.524383 | 3_2:+30189504 | Msa0402250:CDS |
| CTTAGGGTTAGCACCACTGC+TGG | 0.532612 | 3_2:-30186105 | None:intergenic |
| ATTGGTGTCCTAGGATGCAT+GGG | 0.532952 | 3_2:+30187361 | Msa0402250:CDS |
| TTCTTTCTAGGCCTTCCTCT+AGG | 0.533374 | 3_2:-30188999 | None:intergenic |
| TTCCTCATGCAAGCATCGAA+TGG | 0.535078 | 3_2:+30189757 | Msa0402250:CDS |
| GGGACCAAGTACATAGCATC+TGG | 0.536684 | 3_2:+30189125 | Msa0402250:CDS |
| ACTACCAGATGCTATGTACT+TGG | 0.537317 | 3_2:-30189129 | None:intergenic |
| GATTGGTGTCCTAGGATGCA+TGG | 0.541625 | 3_2:+30187360 | Msa0402250:CDS |
| CAGCAGTGGTGCTAACCCTA+AGG | 0.543146 | 3_2:+30186106 | Msa0402250:CDS |
| AAACCATACTTGGATTCTTG+AGG | 0.544459 | 3_2:-30187133 | None:intergenic |
| AGAGACTTTGTGATGAATGT+TGG | 0.551861 | 3_2:+30187318 | Msa0402250:intron |
| AAAGCTGCTGCGAATACAAA+GGG | 0.552131 | 3_2:+30189407 | Msa0402250:CDS |
| AAAGCTGCTCCGAATACAAA+GGG | 0.553544 | 3_2:+30189443 | Msa0402250:CDS |
| ATAATGGCCTACTTGTATCT+GGG | 0.555195 | 3_2:-30189559 | None:intergenic |
| CATCTGGTAGTGTCTCAAAT+GGG | 0.555891 | 3_2:+30189141 | Msa0402250:CDS |
| TTAAATGTGCAGAGAATGGA+AGG | 0.560081 | 3_2:+30186796 | Msa0402250:intron |
| GCTACAGCGGCAAATGATGA+AGG | 0.560213 | 3_2:+30186068 | Msa0402250:CDS |
| ACACCATTGCTAAACTCTGT+GGG | 0.562879 | 3_2:+30186174 | Msa0402250:CDS |
| TTCCCCACAGAGTTTAGCAA+TGG | 0.564444 | 3_2:-30186177 | None:intergenic |
| TAGAAGACACCATATTTGCA+CGG | 0.566075 | 3_2:-30188871 | None:intergenic |
| GTTGTAGCCCAGATACAAGT+AGG | 0.566508 | 3_2:+30189552 | Msa0402250:CDS |
| CGTTGTTTATCAACAGAACA+GGG | 0.567059 | 3_2:+30185847 | Msa0402250:five_prime_UTR |
| GACTTTGTGATGAATGTTGG+AGG | 0.568156 | 3_2:+30187321 | Msa0402250:CDS |
| GAAAGCTGCTCCGAATACAA+AGG | 0.568270 | 3_2:+30189442 | Msa0402250:CDS |
| TGCTGATGATTCTGCTACAG+CGG | 0.574927 | 3_2:+30186055 | Msa0402250:CDS |
| AAATAAAGAGGCCTAGAGGA+AGG | 0.580422 | 3_2:+30188988 | Msa0402250:CDS |
| TGCCCTTTACTTTACCTAGG+TGG | 0.580871 | 3_2:-30185798 | None:intergenic |
| TGATGTTCATCAGAACTGCC+AGG | 0.583511 | 3_2:-30189344 | None:intergenic |
| GGTGCCTCACTTACTGGCAG+AGG | 0.584837 | 3_2:+30188846 | Msa0402250:CDS |
| TCATAATGGAAAGGTGGCAT+GGG | 0.586605 | 3_2:+30189703 | Msa0402250:CDS |
| AAGAAGTATCATATCTCCCC+GGG | 0.588430 | 3_2:+30188913 | Msa0402250:CDS |
| GAATCCAACTGTAATAGCAG+TGG | 0.589763 | 3_2:+30189088 | Msa0402250:CDS |
| GAAAGCTGCTGCGAATACAA+AGG | 0.590265 | 3_2:+30189406 | Msa0402250:CDS |
| CAGTGGATAGTACAAATTGT+GGG | 0.590541 | 3_2:+30189105 | Msa0402250:CDS |
| ATGGTGTCTTCTAAATATCA+GGG | 0.592032 | 3_2:+30188881 | Msa0402250:CDS |
| ATGCTTGAGGTTCCAATACA+GGG | 0.598484 | 3_2:-30189625 | None:intergenic |
| TTATTTGAAATTGTCCACCT+AGG | 0.601577 | 3_2:+30185784 | Msa0402250:five_prime_UTR |
| GCAAATGATGAAGGTGGTGG+TGG | 0.602662 | 3_2:+30186077 | Msa0402250:CDS |
| TCAGCATAATATGCAAAAGG+AGG | 0.605517 | 3_2:+30187090 | Msa0402250:intron |
| AAACAAGAGAGTAATGGAAG+AGG | 0.607256 | 3_2:+30185932 | Msa0402250:exon |
| GAAGAAGTATCATATCTCCC+CGG | 0.607569 | 3_2:+30188912 | Msa0402250:CDS |
| AAATGCCCTTTACTTTACCT+AGG | 0.608444 | 3_2:-30185801 | None:intergenic |
| GGCACCTCTGCCAGTAAGTG+AGG | 0.611285 | 3_2:-30188850 | None:intergenic |
| GACACCATTGCTAAACTCTG+TGG | 0.614594 | 3_2:+30186173 | Msa0402250:CDS |
| GAGGAATCAAGATTGCTAAG+AGG | 0.614969 | 3_2:-30189740 | None:intergenic |
| AATTGCAAACAAGAGAGTAA+TGG | 0.617423 | 3_2:+30185926 | Msa0402250:exon |
| CCTAGCTCATAATGGAAAGG+TGG | 0.620737 | 3_2:+30189697 | Msa0402250:CDS |
| CAGAACTGATATTCAAACCC+TGG | 0.624538 | 3_2:-30185881 | None:intergenic |
| GCAGTGGATAGTACAAATTG+TGG | 0.626003 | 3_2:+30189104 | Msa0402250:CDS |
| ATGCCTAGCTCATAATGGAA+AGG | 0.628963 | 3_2:+30189694 | Msa0402250:CDS |
| TGATTGTTCAATTAAATGTG+AGG | 0.630368 | 3_2:+30187389 | Msa0402250:CDS |
| GCCCATTCGATGCTTGCATG+AGG | 0.635290 | 3_2:-30189759 | None:intergenic |
| GCTAGGCATGACACAACTCT+AGG | 0.640886 | 3_2:-30189680 | None:intergenic |
| GAATGTTGGAGGTTCTGTAT+GGG | 0.641333 | 3_2:+30187332 | Msa0402250:CDS |
| ATGGGACAAGTAGATGCTTG+AGG | 0.647867 | 3_2:-30189638 | None:intergenic |
| GCAAAAGGAGGAGCAACTTG+GGG | 0.648508 | 3_2:+30187102 | Msa0402250:CDS |
| ATAGAAATAAAGAGGCCTAG+AGG | 0.655432 | 3_2:+30188984 | Msa0402250:CDS |
| GCGGCAAATGATGAAGGTGG+TGG | 0.666480 | 3_2:+30186074 | Msa0402250:CDS |
| CACCATTGCTAAACTCTGTG+GGG | 0.668610 | 3_2:+30186175 | Msa0402250:CDS |
| GGTGGTGGTAGTACCAGCAG+TGG | 0.670189 | 3_2:+30186092 | Msa0402250:CDS |
| TGGCATGGGATGTCAAATGG+AGG | 0.678240 | 3_2:+30189717 | Msa0402250:CDS |
| GACTTGTACCTTAGGAACAG+TGG | 0.679559 | 3_2:-30186930 | None:intergenic |
| TCCAATACAGGGCTACCATG+TGG | 0.685481 | 3_2:-30189614 | None:intergenic |
| GAGGCAAATCATCAACCACA+TGG | 0.705993 | 3_2:+30189599 | Msa0402250:CDS |
| TTGGTGTCCTAGGATGCATG+GGG | 0.719461 | 3_2:+30187362 | Msa0402250:CDS |
| TTGTGATAAGATGAACCAGG+CGG | 0.737973 | 3_2:-30188819 | None:intergenic |
| ACAGCGGCAAATGATGAAGG+TGG | 0.745146 | 3_2:+30186071 | Msa0402250:CDS |
| ACAGTGGCAGATGAAAACTG+AGG | 0.800494 | 3_2:-30186914 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATTAGAGTAAAATAT+AGG | - | chr3_2:30186958-30186977 | None:intergenic | 10.0% |
| !!! | TAAGTATATATTTTGCTTTT+AGG | + | chr3_2:30187007-30187026 | Msa0402250:intron | 15.0% |
| !! | TAAAAGGATTTAGATTTAAA+TGG | + | chr3_2:30188093-30188112 | Msa0402250:intron | 15.0% |
| !! | TTTACTACATATATGAATAT+AGG | - | chr3_2:30188678-30188697 | None:intergenic | 15.0% |
| !! | TCTTCAAGTAAATATTTGAT+TGG | - | chr3_2:30186608-30186627 | None:intergenic | 20.0% |
| !! | AATCAAATATTTACTTGAAG+AGG | + | chr3_2:30186607-30186626 | Msa0402250:intron | 20.0% |
| !! | ATCAAATATTTACTTGAAGA+GGG | + | chr3_2:30186608-30186627 | Msa0402250:intron | 20.0% |
| !! | AACCAAAAAAAGAAATTAAG+GGG | - | chr3_2:30186771-30186790 | None:intergenic | 20.0% |
| !! | CAACCAAAAAAAGAAATTAA+GGG | - | chr3_2:30186772-30186791 | None:intergenic | 20.0% |
| !! | TCAACCAAAAAAAGAAATTA+AGG | - | chr3_2:30186773-30186792 | None:intergenic | 20.0% |
| !! | AAATTAGAGTAAAATATAGG+AGG | - | chr3_2:30186955-30186974 | None:intergenic | 20.0% |
| !! | TTTATTCAATGACATTTCTA+TGG | + | chr3_2:30187179-30187198 | Msa0402250:intron | 20.0% |
| !!! | ATATTGTTTTGTTACTTCTT+TGG | + | chr3_2:30187467-30187486 | Msa0402250:intron | 20.0% |
| !!! | TATTGTTTTGTTACTTCTTT+GGG | + | chr3_2:30187468-30187487 | Msa0402250:intron | 20.0% |
| !!! | AGATTTTATTTGAAGTTTGA+TGG | + | chr3_2:30187572-30187591 | Msa0402250:intron | 20.0% |
| !!! | TATTGTTCTTTTAAGAGTTA+AGG | + | chr3_2:30187631-30187650 | Msa0402250:intron | 20.0% |
| !!! | ATTGTTCTTTTAAGAGTTAA+GGG | + | chr3_2:30187632-30187651 | Msa0402250:intron | 20.0% |
| !! | TTCTTAAATTGTGTTGAATT+TGG | - | chr3_2:30187790-30187809 | None:intergenic | 20.0% |
| !!! | TCAACACAATTTAAGAATTT+TGG | + | chr3_2:30187793-30187812 | Msa0402250:intron | 20.0% |
| !!! | TTTCATTGTTATTTGTTTCA+TGG | - | chr3_2:30187821-30187840 | None:intergenic | 20.0% |
| !!! | AGCACATATTTTTGAAAAAA+TGG | + | chr3_2:30187996-30188015 | Msa0402250:intron | 20.0% |
| !!! | TTTTATTCCAAACTGTTAAA+AGG | + | chr3_2:30188077-30188096 | Msa0402250:intron | 20.0% |
| !! | TTTATCACTAGAAATGATTT+AGG | + | chr3_2:30188116-30188135 | Msa0402250:intron | 20.0% |
| !! | CATAATTAACAAAAGGATTT+AGG | - | chr3_2:30188505-30188524 | None:intergenic | 20.0% |
| !!! | AATCCTTTTGTTAATTATGA+TGG | + | chr3_2:30188506-30188525 | Msa0402250:intron | 20.0% |
| !! | TATCAAAATAGGTATATGTA+TGG | - | chr3_2:30188621-30188640 | None:intergenic | 20.0% |
| !! | TTACATACAAGAGTAAAAAA+AGG | + | chr3_2:30189195-30189214 | Msa0402250:CDS | 20.0% |
| !!! | ACAACAATTTTCTAATACAA+AGG | + | chr3_2:30189370-30189389 | Msa0402250:CDS | 20.0% |
| !!! | CAACAATTTTCTAATACAAA+GGG | + | chr3_2:30189371-30189390 | Msa0402250:CDS | 20.0% |
| ! | CTCTTTGATATTAAATAGTG+TGG | - | chr3_2:30185979-30185998 | None:intergenic | 25.0% |
| ! | TATCAAACAAAGAAACCTTA+GGG | - | chr3_2:30186124-30186143 | None:intergenic | 25.0% |
| ! | ATATCAAACAAAGAAACCTT+AGG | - | chr3_2:30186125-30186144 | None:intergenic | 25.0% |
| ! | ATCATACCTTAAAAAAGTGA+CGG | - | chr3_2:30186255-30186274 | None:intergenic | 25.0% |
| ! | ATAATCATTGAATGACTAAG+TGG | + | chr3_2:30186563-30186582 | Msa0402250:intron | 25.0% |
| !!! | AACCCCTTAATTTCTTTTTT+TGG | + | chr3_2:30186766-30186785 | Msa0402250:intron | 25.0% |
| !!! | AATATCCATCTAAAAGCATT+AGG | + | chr3_2:30186825-30186844 | Msa0402250:CDS | 25.0% |
| !!! | AAAAGCATTAGGTTTACTTA+CGG | + | chr3_2:30186836-30186855 | Msa0402250:CDS | 25.0% |
| !! | TTTTCAGCATAATATGCAAA+AGG | + | chr3_2:30187087-30187106 | Msa0402250:intron | 25.0% |
| ! | AGTTAATATCAAACCATACT+TGG | - | chr3_2:30187146-30187165 | None:intergenic | 25.0% |
| !!! | GATATTAACTTATTTTGTCG+TGG | + | chr3_2:30187156-30187175 | Msa0402250:intron | 25.0% |
| ! | TCACATTTAATTGAACAATC+AGG | - | chr3_2:30187390-30187409 | None:intergenic | 25.0% |
| ! | TGATTGTTCAATTAAATGTG+AGG | + | chr3_2:30187389-30187408 | Msa0402250:CDS | 25.0% |
| !! | TCTAAATCCTTTTAACAGTT+TGG | - | chr3_2:30188087-30188106 | None:intergenic | 25.0% |
| ! | CTAAATAGTATACACAATTG+CGG | + | chr3_2:30188253-30188272 | Msa0402250:intron | 25.0% |
| ! | AAAAAAAGTGAACGACAAAA+AGG | - | chr3_2:30188354-30188373 | None:intergenic | 25.0% |
| ! | TCTCCATCATAATTAACAAA+AGG | - | chr3_2:30188512-30188531 | None:intergenic | 25.0% |
| !!! | TACCTATTTTGATAGTTTTG+TGG | + | chr3_2:30188627-30188646 | Msa0402250:intron | 25.0% |
| ! | ACAAATCGATAGAAATAAAG+AGG | + | chr3_2:30188976-30188995 | Msa0402250:CDS | 25.0% |
| !!! | CTTTTTCTCTTGTTTGTAAT+AGG | - | chr3_2:30189053-30189072 | None:intergenic | 25.0% |
| ! | ATTACAAACAAGAGAAAAAG+AGG | + | chr3_2:30189053-30189072 | Msa0402250:CDS | 25.0% |
| !!! | ATTACAGTTGGATTCTTTTT+TGG | - | chr3_2:30189083-30189102 | None:intergenic | 25.0% |
| !! | CCATCTTTTGAATTCTTTTT+CGG | - | chr3_2:30189233-30189252 | None:intergenic | 25.0% |
| !! | TAGGTTGGATATTAATCATA+GGG | + | chr3_2:30189523-30189542 | Msa0402250:CDS | 25.0% |
| ! | TTATTTGAAATTGTCCACCT+AGG | + | chr3_2:30185784-30185803 | Msa0402250:five_prime_UTR | 30.0% |
| AATTGCAAACAAGAGAGTAA+TGG | + | chr3_2:30185926-30185945 | Msa0402250:exon | 30.0% | |
| TAAATAGTGTGGCAAAAGTT+AGG | - | chr3_2:30185968-30185987 | None:intergenic | 30.0% | |
| GAAAAAGAAGAAAAAGACGA+AGG | + | chr3_2:30186010-30186029 | Msa0402250:CDS | 30.0% | |
| !!! | TTTCTTCCGTCACTTTTTTA+AGG | + | chr3_2:30186246-30186265 | Msa0402250:CDS | 30.0% |
| GTTAATCTGTTGTGAAGAAA+TGG | + | chr3_2:30186318-30186337 | Msa0402250:intron | 30.0% | |
| TTATAACCAACTCAAAGAGT+TGG | - | chr3_2:30186482-30186501 | None:intergenic | 30.0% | |
| !! | AACTCTTTGAGTTGGTTATA+AGG | + | chr3_2:30186481-30186500 | Msa0402250:intron | 30.0% |
| GATTGGATAGACATAATTGT+AGG | - | chr3_2:30186591-30186610 | None:intergenic | 30.0% | |
| AATATTTACTTGAAGAGGGA+AGG | + | chr3_2:30186612-30186631 | Msa0402250:intron | 30.0% | |
| ATATTTACTTGAAGAGGGAA+GGG | + | chr3_2:30186613-30186632 | Msa0402250:intron | 30.0% | |
| AAAGAAATTAAGGGGTTGTT+TGG | - | chr3_2:30186763-30186782 | None:intergenic | 30.0% | |
| ! | GTAAACCTAATGCTTTTAGA+TGG | - | chr3_2:30186833-30186852 | None:intergenic | 30.0% |
| ATTAGGTTTACTTACGGAAT+TGG | + | chr3_2:30186842-30186861 | Msa0402250:CDS | 30.0% | |
| TTAGGTTTACTTACGGAATT+GGG | + | chr3_2:30186843-30186862 | Msa0402250:CDS | 30.0% | |
| CTCTAATTTAATTGTTTGCC+AGG | + | chr3_2:30186966-30186985 | Msa0402250:intron | 30.0% | |
| ATATACTATAACTTCATGCC+TGG | - | chr3_2:30186987-30187006 | None:intergenic | 30.0% | |
| ! | TCGCTGATTATTGTTTAACT+TGG | + | chr3_2:30187276-30187295 | Msa0402250:intron | 30.0% |
| !! | AGTCAATTCTGTCTTTTTCA+TGG | + | chr3_2:30187521-30187540 | Msa0402250:intron | 30.0% |
| !! | TTATTTGAAGTTTGATGGTG+AGG | + | chr3_2:30187577-30187596 | Msa0402250:intron | 30.0% |
| TAGCAGTAAAACATAGTGTA+CGG | + | chr3_2:30187700-30187719 | Msa0402250:intron | 30.0% | |
| TACGGCATATATTATAAGCA+AGG | + | chr3_2:30187718-30187737 | Msa0402250:intron | 30.0% | |
| ACGGCATATATTATAAGCAA+GGG | + | chr3_2:30187719-30187738 | Msa0402250:intron | 30.0% | |
| ACATAATTGTAGAATAGAGG+TGG | + | chr3_2:30187744-30187763 | Msa0402250:intron | 30.0% | |
| ATTAACCTAAAGGATTCAAG+TGG | + | chr3_2:30187850-30187869 | Msa0402250:intron | 30.0% | |
| TTAACCTAAAGGATTCAAGT+GGG | + | chr3_2:30187851-30187870 | Msa0402250:intron | 30.0% | |
| AATGCGTTAAAGAGAAAGTT+TGG | + | chr3_2:30187971-30187990 | Msa0402250:intron | 30.0% | |
| ATGCGTTAAAGAGAAAGTTT+GGG | + | chr3_2:30187972-30187991 | Msa0402250:intron | 30.0% | |
| AATAGGTATATGTATGGAGT+AGG | - | chr3_2:30188615-30188634 | None:intergenic | 30.0% | |
| GACCACAAAACTATCAAAAT+AGG | - | chr3_2:30188632-30188651 | None:intergenic | 30.0% | |
| TAAACCAAGTATCAGAAAGA+AGG | - | chr3_2:30188777-30188796 | None:intergenic | 30.0% | |
| ! | ATTTTGTGATAAGATGAACC+AGG | - | chr3_2:30188825-30188844 | None:intergenic | 30.0% |
| TGGTTCATCTTATCACAAAA+TGG | + | chr3_2:30188824-30188843 | Msa0402250:CDS | 30.0% | |
| GGTTCATCTTATCACAAAAT+GGG | + | chr3_2:30188825-30188844 | Msa0402250:CDS | 30.0% | |
| TATGGTGTCTTCTAAATATC+AGG | + | chr3_2:30188880-30188899 | Msa0402250:CDS | 30.0% | |
| ATGGTGTCTTCTAAATATCA+GGG | + | chr3_2:30188881-30188900 | Msa0402250:CDS | 30.0% | |
| ! | TTTTCAGTAGGATTCTTTCT+AGG | - | chr3_2:30189014-30189033 | None:intergenic | 30.0% |
| AAGAGTAAAAAAAGGCCTAA+AGG | + | chr3_2:30189203-30189222 | Msa0402250:CDS | 30.0% | |
| CCGAAAAAGAATTCAAAAGA+TGG | + | chr3_2:30189230-30189249 | Msa0402250:CDS | 30.0% | |
| ! | ACAAATTGGTTCTCACAATT+TGG | - | chr3_2:30189269-30189288 | None:intergenic | 30.0% |
| GAAATAAATTCAGCTGAATC+TGG | - | chr3_2:30189311-30189330 | None:intergenic | 30.0% | |
| ! | GTAGGTTGGATATTAATCAT+AGG | + | chr3_2:30189522-30189541 | Msa0402250:CDS | 30.0% |
| TTCTCACACTGAATCAATAA+TGG | - | chr3_2:30189578-30189597 | None:intergenic | 30.0% | |
| ! | AATGCTACATTTTGTGGAAT+GGG | - | chr3_2:30189659-30189678 | None:intergenic | 30.0% |
| AAATGCCCTTTACTTTACCT+AGG | - | chr3_2:30185804-30185823 | None:intergenic | 35.0% | |
| GGCATTTACCTTTCACAAAA+GGG | + | chr3_2:30185817-30185836 | Msa0402250:five_prime_UTR | 35.0% | |
| ACCTTTCACAAAAGGGATTA+AGG | + | chr3_2:30185824-30185843 | Msa0402250:five_prime_UTR | 35.0% | |
| CGTTGTTTATCAACAGAACA+GGG | + | chr3_2:30185847-30185866 | Msa0402250:five_prime_UTR | 35.0% | |
| AGGGTTTGAATATCAGTTCT+GGG | + | chr3_2:30185883-30185902 | Msa0402250:five_prime_UTR | 35.0% | |
| ! | AAACAAGAGAGTAATGGAAG+AGG | + | chr3_2:30185932-30185951 | Msa0402250:exon | 35.0% |
| ! | CGAGAATTTCTTTGAAGACA+TGG | + | chr3_2:30186151-30186170 | Msa0402250:CDS | 35.0% |
| TGTTCTTGAGCAATACGATT+TGG | + | chr3_2:30186352-30186371 | Msa0402250:intron | 35.0% | |
| ! | AGAGTTGGTTAGGATTGATT+AGG | - | chr3_2:30186467-30186486 | None:intergenic | 35.0% |
| TATGAACCGAATCTCTAAGT+TGG | + | chr3_2:30186680-30186699 | Msa0402250:intron | 35.0% | |
| ATGAACCGAATCTCTAAGTT+GGG | + | chr3_2:30186681-30186700 | Msa0402250:intron | 35.0% | |
| ACCATTAAATGTGCAGAGAA+TGG | + | chr3_2:30186792-30186811 | Msa0402250:intron | 35.0% | |
| TCCATTCTCTGCACATTTAA+TGG | - | chr3_2:30186796-30186815 | None:intergenic | 35.0% | |
| TTAAATGTGCAGAGAATGGA+AGG | + | chr3_2:30186796-30186815 | Msa0402250:intron | 35.0% | |
| TCAGCATAATATGCAAAAGG+AGG | + | chr3_2:30187090-30187109 | Msa0402250:intron | 35.0% | |
| ATACTTGGATTCTTGAGGTT+TGG | - | chr3_2:30187131-30187150 | None:intergenic | 35.0% | |
| AAACCTCAAGAATCCAAGTA+TGG | + | chr3_2:30187130-30187149 | Msa0402250:intron | 35.0% | |
| AAACCATACTTGGATTCTTG+AGG | - | chr3_2:30187136-30187155 | None:intergenic | 35.0% | |
| AACTTGGCTAAACACTTTGT+TGG | + | chr3_2:30187292-30187311 | Msa0402250:intron | 35.0% | |
| AGAGACTTTGTGATGAATGT+TGG | + | chr3_2:30187318-30187337 | Msa0402250:intron | 35.0% | |
| TGTGATGTTTCATACGTTGA+GGG | + | chr3_2:30187549-30187568 | Msa0402250:intron | 35.0% | |
| CTCTTAAAAGAACAATACGC+TGG | - | chr3_2:30187628-30187647 | None:intergenic | 35.0% | |
| CGGCATATATTATAAGCAAG+GGG | + | chr3_2:30187720-30187739 | Msa0402250:intron | 35.0% | |
| GGCACATAATTGTAGAATAG+AGG | + | chr3_2:30187741-30187760 | Msa0402250:intron | 35.0% | |
| GTGTTGAATTTGGTATGCTA+TGG | - | chr3_2:30187780-30187799 | None:intergenic | 35.0% | |
| ACAGAGCGAAATTAACCTAA+AGG | + | chr3_2:30187840-30187859 | Msa0402250:intron | 35.0% | |
| ! | GTAATTTTCGATCACAAAGC+AGG | - | chr3_2:30187898-30187917 | None:intergenic | 35.0% |
| AAATGGAAAAACACTGCCTT+AGG | + | chr3_2:30188013-30188032 | Msa0402250:intron | 35.0% | |
| GATATAGTACTATTGCTGAG+AGG | - | chr3_2:30188200-30188219 | None:intergenic | 35.0% | |
| CTATCAAATAGCGACTATAG+TGG | - | chr3_2:30188224-30188243 | None:intergenic | 35.0% | |
| GACATTTGGCATACAGAAAA+TGG | - | chr3_2:30188422-30188441 | None:intergenic | 35.0% | |
| ! | GTTAATTATGATGGAGACAC+TGG | + | chr3_2:30188515-30188534 | Msa0402250:intron | 35.0% |
| TTATTTCCTACTTCCAAGTC+TGG | - | chr3_2:30188721-30188740 | None:intergenic | 35.0% | |
| ATGACCTTCTTTCTGATACT+TGG | + | chr3_2:30188770-30188789 | Msa0402250:intron | 35.0% | |
| TAGAAGACACCATATTTGCA+CGG | - | chr3_2:30188874-30188893 | None:intergenic | 35.0% | |
| !!! | AGGTTTTTTTTCCTTCTTCC+CGG | - | chr3_2:30188934-30188953 | None:intergenic | 35.0% |
| !!! | TTTGTGCACGTGTCTTTTTT+AGG | - | chr3_2:30188954-30188973 | None:intergenic | 35.0% |
| ATAGAAATAAAGAGGCCTAG+AGG | + | chr3_2:30188984-30189003 | Msa0402250:CDS | 35.0% | |
| !! | ATTGCTTCGTTGTTTTCAGT+AGG | - | chr3_2:30189026-30189045 | None:intergenic | 35.0% |
| CAGTGGATAGTACAAATTGT+GGG | + | chr3_2:30189105-30189124 | Msa0402250:CDS | 35.0% | |
| !!! | TTCTTTTTCGGTCTTCCTTT+AGG | - | chr3_2:30189221-30189240 | None:intergenic | 35.0% |
| GAACAGTAAGAGGAACAAAT+TGG | - | chr3_2:30189283-30189302 | None:intergenic | 35.0% | |
| GCATTCTTTCCCTTTGTATT+CGG | - | chr3_2:30189383-30189402 | None:intergenic | 35.0% | |
| AAACTCTTGTTGCAAGAAGT+AGG | + | chr3_2:30189504-30189523 | Msa0402250:CDS | 35.0% | |
| ATAATGGCCTACTTGTATCT+GGG | - | chr3_2:30189562-30189581 | None:intergenic | 35.0% | |
| AATAATGGCCTACTTGTATC+TGG | - | chr3_2:30189563-30189582 | None:intergenic | 35.0% | |
| ! | ATTGATTCAGTGTGAGAATG+AGG | + | chr3_2:30189580-30189599 | Msa0402250:CDS | 35.0% |
| ! | CAATGCTACATTTTGTGGAA+TGG | - | chr3_2:30189660-30189679 | None:intergenic | 35.0% |
| TGTCCACCTAGGTAAAGTAA+AGG | + | chr3_2:30185795-30185814 | Msa0402250:five_prime_UTR | 40.0% | |
| GTCCACCTAGGTAAAGTAAA+GGG | + | chr3_2:30185796-30185815 | Msa0402250:five_prime_UTR | 40.0% | |
| GGGCATTTACCTTTCACAAA+AGG | + | chr3_2:30185816-30185835 | Msa0402250:five_prime_UTR | 40.0% | |
| ! | GCCTTAATCCCTTTTGTGAA+AGG | - | chr3_2:30185828-30185847 | None:intergenic | 40.0% |
| GCGTTGTTTATCAACAGAAC+AGG | + | chr3_2:30185846-30185865 | Msa0402250:five_prime_UTR | 40.0% | |
| CAGAACTGATATTCAAACCC+TGG | - | chr3_2:30185884-30185903 | None:intergenic | 40.0% | |
| CAGGGTTTGAATATCAGTTC+TGG | + | chr3_2:30185882-30185901 | Msa0402250:five_prime_UTR | 40.0% | |
| ! | ACTCTCTTGTTTGCAATTGC+AGG | - | chr3_2:30185924-30185943 | None:intergenic | 40.0% |
| ACACCATTGCTAAACTCTGT+GGG | + | chr3_2:30186174-30186193 | Msa0402250:CDS | 40.0% | |
| ATGTATCAGCTATGATGCTC+TGG | + | chr3_2:30186392-30186411 | Msa0402250:intron | 40.0% | |
| TCCTAACCAACTCTTTGAGT+TGG | + | chr3_2:30186473-30186492 | Msa0402250:intron | 40.0% | |
| ! | ACCAACTCAAAGAGTTGGTT+AGG | - | chr3_2:30186477-30186496 | None:intergenic | 40.0% |
| AGGCAGTGCTAATCTATGTA+AGG | + | chr3_2:30186501-30186520 | Msa0402250:intron | 40.0% | |
| CGAAACCCAACTTAGAGATT+CGG | - | chr3_2:30186689-30186708 | None:intergenic | 40.0% | |
| TATAGGAGGACTTGTACCTT+AGG | - | chr3_2:30186941-30186960 | None:intergenic | 40.0% | |
| GACTTTGTGATGAATGTTGG+AGG | + | chr3_2:30187321-30187340 | Msa0402250:CDS | 40.0% | |
| TGAATGTTGGAGGTTCTGTA+TGG | + | chr3_2:30187331-30187350 | Msa0402250:CDS | 40.0% | |
| GAATGTTGGAGGTTCTGTAT+GGG | + | chr3_2:30187332-30187351 | Msa0402250:CDS | 40.0% | |
| GTTCTGTATGGGCATTAGAT+TGG | + | chr3_2:30187343-30187362 | Msa0402250:CDS | 40.0% | |
| GTGTGATGTTTCATACGTTG+AGG | + | chr3_2:30187548-30187567 | Msa0402250:intron | 40.0% | |
| !! | TGAAGTTTGATGGTGAGGTA+AGG | + | chr3_2:30187582-30187601 | Msa0402250:intron | 40.0% |
| !! | GAAGTTTGATGGTGAGGTAA+GGG | + | chr3_2:30187583-30187602 | Msa0402250:intron | 40.0% |
| !! | AAGTTTGATGGTGAGGTAAG+GGG | + | chr3_2:30187584-30187603 | Msa0402250:intron | 40.0% |
| GCTACTTCTACTCACACATT+CGG | - | chr3_2:30187684-30187703 | None:intergenic | 40.0% | |
| ATACATGTCCAAACCACCTA+AGG | - | chr3_2:30188032-30188051 | None:intergenic | 40.0% | |
| ! | TGGTTTGGACATGTATTGAG+AGG | + | chr3_2:30188036-30188055 | Msa0402250:intron | 40.0% |
| GTGTTGTCAATCTCAGATAG+TGG | + | chr3_2:30188162-30188181 | Msa0402250:intron | 40.0% | |
| ! | CACTATAACGTGGTGGAATT+TGG | - | chr3_2:30188284-30188303 | None:intergenic | 40.0% |
| CAAATTCCACCACGTTATAG+TGG | + | chr3_2:30188282-30188301 | Msa0402250:intron | 40.0% | |
| GATGCTATACCACTATAACG+TGG | - | chr3_2:30188294-30188313 | None:intergenic | 40.0% | |
| AAGGAATTACCCACATCACA+GGG | - | chr3_2:30188335-30188354 | None:intergenic | 40.0% | |
| AAAGGAATTACCCACATCAC+AGG | - | chr3_2:30188336-30188355 | None:intergenic | 40.0% | |
| TTGGCATACAGAAAATGGTG+AGG | - | chr3_2:30188417-30188436 | None:intergenic | 40.0% | |
| ! | CATGGTGTCAACTAGCTATT+AGG | - | chr3_2:30188462-30188481 | None:intergenic | 40.0% |
| CACCATGTTAAATTACCACC+TGG | + | chr3_2:30188475-30188494 | Msa0402250:intron | 40.0% | |
| AGCCAGGTGGTAATTTAACA+TGG | - | chr3_2:30188480-30188499 | None:intergenic | 40.0% | |
| CAAAAGGATTTAGGTAAGCC+AGG | - | chr3_2:30188496-30188515 | None:intergenic | 40.0% | |
| ACTTACCTTTGTTCCAGACT+TGG | + | chr3_2:30188705-30188724 | Msa0402250:intron | 40.0% | |
| ! | TACTTCCAAGTCTGGAACAA+AGG | - | chr3_2:30188713-30188732 | None:intergenic | 40.0% |
| TTTGTTCCAGACTTGGAAGT+AGG | + | chr3_2:30188712-30188731 | Msa0402250:intron | 40.0% | |
| TTGTGATAAGATGAACCAGG+CGG | - | chr3_2:30188822-30188841 | None:intergenic | 40.0% | |
| !! | GAAGAAGTATCATATCTCCC+CGG | + | chr3_2:30188912-30188931 | Msa0402250:CDS | 40.0% |
| !! | AAGAAGTATCATATCTCCCC+GGG | + | chr3_2:30188913-30188932 | Msa0402250:CDS | 40.0% |
| !!! | GTTTTTTTTCCTTCTTCCCG+GGG | - | chr3_2:30188932-30188951 | None:intergenic | 40.0% |
| !!! | GGTTTTTTTTCCTTCTTCCC+GGG | - | chr3_2:30188933-30188952 | None:intergenic | 40.0% |
| AAATAAAGAGGCCTAGAGGA+AGG | + | chr3_2:30188988-30189007 | Msa0402250:CDS | 40.0% | |
| GAATCCAACTGTAATAGCAG+TGG | + | chr3_2:30189088-30189107 | Msa0402250:CDS | 40.0% | |
| CTATCCACTGCTATTACAGT+TGG | - | chr3_2:30189095-30189114 | None:intergenic | 40.0% | |
| GCAGTGGATAGTACAAATTG+TGG | + | chr3_2:30189104-30189123 | Msa0402250:CDS | 40.0% | |
| ACTACCAGATGCTATGTACT+TGG | - | chr3_2:30189132-30189151 | None:intergenic | 40.0% | |
| ! | CATCTGGTAGTGTCTCAAAT+GGG | + | chr3_2:30189141-30189160 | Msa0402250:CDS | 40.0% |
| TCTGGAAGTTGAACAGTAAG+AGG | - | chr3_2:30189293-30189312 | None:intergenic | 40.0% | |
| ATTTCTCCAGATGTAGTTCC+TGG | + | chr3_2:30189326-30189345 | Msa0402250:CDS | 40.0% | |
| AAAGCTGCTGCGAATACAAA+GGG | + | chr3_2:30189407-30189426 | Msa0402250:CDS | 40.0% | |
| AAAGCTGCTCCGAATACAAA+GGG | + | chr3_2:30189443-30189462 | Msa0402250:CDS | 40.0% | |
| TCTTGTTGCAAGAAGTAGGT+TGG | + | chr3_2:30189508-30189527 | Msa0402250:CDS | 40.0% | |
| ATGCTTGAGGTTCCAATACA+GGG | - | chr3_2:30189628-30189647 | None:intergenic | 40.0% | |
| ! | CTAGGCAATGCTACATTTTG+TGG | - | chr3_2:30189665-30189684 | None:intergenic | 40.0% |
| ! | ATGCCTAGCTCATAATGGAA+AGG | + | chr3_2:30189694-30189713 | Msa0402250:CDS | 40.0% |
| ! | TCATAATGGAAAGGTGGCAT+GGG | + | chr3_2:30189703-30189722 | Msa0402250:CDS | 40.0% |
| GAGGAATCAAGATTGCTAAG+AGG | - | chr3_2:30189743-30189762 | None:intergenic | 40.0% | |
| TGCCCTTTACTTTACCTAGG+TGG | - | chr3_2:30185801-30185820 | None:intergenic | 45.0% | |
| !!! | AACAGGGTTTTAGCTTGTCC+AGG | + | chr3_2:30185863-30185882 | Msa0402250:five_prime_UTR | 45.0% |
| !!! | ACAGGGTTTTAGCTTGTCCA+GGG | + | chr3_2:30185864-30185883 | Msa0402250:five_prime_UTR | 45.0% |
| TGCTGATGATTCTGCTACAG+CGG | + | chr3_2:30186055-30186074 | Msa0402250:CDS | 45.0% | |
| GACACCATTGCTAAACTCTG+TGG | + | chr3_2:30186173-30186192 | Msa0402250:CDS | 45.0% | |
| CACCATTGCTAAACTCTGTG+GGG | + | chr3_2:30186175-30186194 | Msa0402250:CDS | 45.0% | |
| TTCCCCACAGAGTTTAGCAA+TGG | - | chr3_2:30186180-30186199 | None:intergenic | 45.0% | |
| GGCGATAGTGATACAAACTG+AGG | - | chr3_2:30186446-30186465 | None:intergenic | 45.0% | |
| TTGAAGAGGGAAGGGAAAGT+TGG | + | chr3_2:30186621-30186640 | Msa0402250:intron | 45.0% | |
| ACAGTGGCAGATGAAAACTG+AGG | - | chr3_2:30186917-30186936 | None:intergenic | 45.0% | |
| TTCATCTGCCACTGTTCCTA+AGG | + | chr3_2:30186922-30186941 | Msa0402250:CDS | 45.0% | |
| GACTTGTACCTTAGGAACAG+TGG | - | chr3_2:30186933-30186952 | None:intergenic | 45.0% | |
| ATGCAAAAGGAGGAGCAACT+TGG | + | chr3_2:30187100-30187119 | Msa0402250:CDS | 45.0% | |
| TGCAAAAGGAGGAGCAACTT+GGG | + | chr3_2:30187101-30187120 | Msa0402250:CDS | 45.0% | |
| ! | ATTGGTGTCCTAGGATGCAT+GGG | + | chr3_2:30187361-30187380 | Msa0402250:CDS | 45.0% |
| ! | GGTAAGGGGCACATAGTATA+TGG | + | chr3_2:30187598-30187617 | Msa0402250:intron | 45.0% |
| CTCACCCACTTGAATCCTTT+AGG | - | chr3_2:30187858-30187877 | None:intergenic | 45.0% | |
| TTCAAGTGGGTGAGATGCAA+AGG | + | chr3_2:30187864-30187883 | Msa0402250:intron | 45.0% | |
| TCAAGTGGGTGAGATGCAAA+GGG | + | chr3_2:30187865-30187884 | Msa0402250:intron | 45.0% | |
| TGGAAAAACACTGCCTTAGG+TGG | + | chr3_2:30188016-30188035 | Msa0402250:intron | 45.0% | |
| AAACACTGCCTTAGGTGGTT+TGG | + | chr3_2:30188021-30188040 | Msa0402250:intron | 45.0% | |
| GCTATACCACTATAACGTGG+TGG | - | chr3_2:30188291-30188310 | None:intergenic | 45.0% | |
| TGCTATTATCCCCTGTGATG+TGG | + | chr3_2:30188322-30188341 | Msa0402250:intron | 45.0% | |
| GCTATTATCCCCTGTGATGT+GGG | + | chr3_2:30188323-30188342 | Msa0402250:intron | 45.0% | |
| AGGAATTACCCACATCACAG+GGG | - | chr3_2:30188334-30188353 | None:intergenic | 45.0% | |
| ATGCCAAATGTCAGATGCCA+TGG | + | chr3_2:30188430-30188449 | Msa0402250:intron | 45.0% | |
| AGTCCATGGCATCTGACATT+TGG | - | chr3_2:30188436-30188455 | None:intergenic | 45.0% | |
| AATGTCAGATGCCATGGACT+CGG | + | chr3_2:30188436-30188455 | Msa0402250:intron | 45.0% | |
| AAGGATTTAGGTAAGCCAGG+TGG | - | chr3_2:30188493-30188512 | None:intergenic | 45.0% | |
| AAAATGGGTGCCTCACTTAC+TGG | + | chr3_2:30188840-30188859 | Msa0402250:CDS | 45.0% | |
| TTCTTTCTAGGCCTTCCTCT+AGG | - | chr3_2:30189002-30189021 | None:intergenic | 45.0% | |
| ! | GCATCTGGTAGTGTCTCAAA+TGG | + | chr3_2:30189140-30189159 | Msa0402250:CDS | 45.0% |
| TGATGTTCATCAGAACTGCC+AGG | - | chr3_2:30189347-30189366 | None:intergenic | 45.0% | |
| TGTATTCGCAGCAGCTTTCT+TGG | - | chr3_2:30189405-30189424 | None:intergenic | 45.0% | |
| GAAAGCTGCTGCGAATACAA+AGG | + | chr3_2:30189406-30189425 | Msa0402250:CDS | 45.0% | |
| GAAAGCTGCTCCGAATACAA+AGG | + | chr3_2:30189442-30189461 | Msa0402250:CDS | 45.0% | |
| GTATGCAGAAGCAGCTTTCT+TGG | - | chr3_2:30189477-30189496 | None:intergenic | 45.0% | |
| GTTGTAGCCCAGATACAAGT+AGG | + | chr3_2:30189552-30189571 | Msa0402250:CDS | 45.0% | |
| GAGGCAAATCATCAACCACA+TGG | + | chr3_2:30189599-30189618 | Msa0402250:CDS | 45.0% | |
| GATGCTTGAGGTTCCAATAC+AGG | - | chr3_2:30189629-30189648 | None:intergenic | 45.0% | |
| ATGGGACAAGTAGATGCTTG+AGG | - | chr3_2:30189641-30189660 | None:intergenic | 45.0% | |
| GTGTCATGCCTAGCTCATAA+TGG | + | chr3_2:30189689-30189708 | Msa0402250:CDS | 45.0% | |
| CCACCTTTCCATTATGAGCT+AGG | - | chr3_2:30189700-30189719 | None:intergenic | 45.0% | |
| ! | CCTAGCTCATAATGGAAAGG+TGG | + | chr3_2:30189697-30189716 | Msa0402250:CDS | 45.0% |
| ! | CTCATAATGGAAAGGTGGCA+TGG | + | chr3_2:30189702-30189721 | Msa0402250:CDS | 45.0% |
| !! | TTCCTCATGCAAGCATCGAA+TGG | + | chr3_2:30189757-30189776 | Msa0402250:CDS | 45.0% |
| !! | TCCTCATGCAAGCATCGAAT+GGG | + | chr3_2:30189758-30189777 | Msa0402250:CDS | 45.0% |
| ! | GGCTATCTTGCTGTCTTGTT+GGG | + | chr3_2:30189779-30189798 | Msa0402250:CDS | 45.0% |
| GCTACAGCGGCAAATGATGA+AGG | + | chr3_2:30186068-30186087 | Msa0402250:CDS | 50.0% | |
| ACAGCGGCAAATGATGAAGG+TGG | + | chr3_2:30186071-30186090 | Msa0402250:CDS | 50.0% | |
| ! | GCAAATGATGAAGGTGGTGG+TGG | + | chr3_2:30186077-30186096 | Msa0402250:CDS | 50.0% |
| GCAAAAGGAGGAGCAACTTG+GGG | + | chr3_2:30187102-30187121 | Msa0402250:CDS | 50.0% | |
| ! | GGGCATTAGATTGGTGTCCT+AGG | + | chr3_2:30187352-30187371 | Msa0402250:CDS | 50.0% |
| ! | GATTGGTGTCCTAGGATGCA+TGG | + | chr3_2:30187360-30187379 | Msa0402250:CDS | 50.0% |
| ! | TTGGTGTCCTAGGATGCATG+GGG | + | chr3_2:30187362-30187381 | Msa0402250:CDS | 50.0% |
| CAAGTGGGTGAGATGCAAAG+GGG | + | chr3_2:30187866-30187885 | Msa0402250:intron | 50.0% | |
| TAGCTATTAGGCCGAGTCCA+TGG | - | chr3_2:30188450-30188469 | None:intergenic | 50.0% | |
| ATCATATCTCCCCGGGAAGA+AGG | + | chr3_2:30188920-30188939 | Msa0402250:CDS | 50.0% | |
| GGGACCAAGTACATAGCATC+TGG | + | chr3_2:30189125-30189144 | Msa0402250:CDS | 50.0% | |
| GAACTGCCAGGAACTACATC+TGG | - | chr3_2:30189335-30189354 | None:intergenic | 50.0% | |
| ACCACATGGTAGCCCTGTAT+TGG | + | chr3_2:30189613-30189632 | Msa0402250:CDS | 50.0% | |
| TCCAATACAGGGCTACCATG+TGG | - | chr3_2:30189617-30189636 | None:intergenic | 50.0% | |
| GCTAGGCATGACACAACTCT+AGG | - | chr3_2:30189683-30189702 | None:intergenic | 50.0% | |
| AGGTGGCATGGGATGTCAAA+TGG | + | chr3_2:30189714-30189733 | Msa0402250:CDS | 50.0% | |
| TGGCATGGGATGTCAAATGG+AGG | + | chr3_2:30189717-30189736 | Msa0402250:CDS | 50.0% | |
| ! | GGGCTATCTTGCTGTCTTGT+TGG | + | chr3_2:30189778-30189797 | Msa0402250:CDS | 50.0% |
| ! | CTTGCTGTCTTGTTGGGCAA+TGG | + | chr3_2:30189785-30189804 | Msa0402250:CDS | 50.0% |
| CTTGTTGGGCAATGGATCTC+TGG | + | chr3_2:30189793-30189812 | Msa0402250:CDS | 50.0% | |
| GCGGCAAATGATGAAGGTGG+TGG | + | chr3_2:30186074-30186093 | Msa0402250:CDS | 55.0% | |
| ! | CTTAGGGTTAGCACCACTGC+TGG | - | chr3_2:30186108-30186127 | None:intergenic | 55.0% |
| ! | CAGCAGTGGTGCTAACCCTA+AGG | + | chr3_2:30186106-30186125 | Msa0402250:CDS | 55.0% |
| !! | GCAGAGGTGCCGTGCAAATA+TGG | + | chr3_2:30188862-30188881 | Msa0402250:CDS | 55.0% |
| GCCCATTCGATGCTTGCATG+AGG | - | chr3_2:30189762-30189781 | None:intergenic | 55.0% | |
| ! | GGTGGTGGTAGTACCAGCAG+TGG | + | chr3_2:30186092-30186111 | Msa0402250:CDS | 60.0% |
| TCAGGCTCCCCATGCATCCT+AGG | - | chr3_2:30187372-30187391 | None:intergenic | 60.0% | |
| GGTGCCTCACTTACTGGCAG+AGG | + | chr3_2:30188846-30188865 | Msa0402250:CDS | 60.0% | |
| GGCACCTCTGCCAGTAAGTG+AGG | - | chr3_2:30188853-30188872 | None:intergenic | 60.0% | |
| GCTGTTGCTGCTCATCCGCC+TGG | + | chr3_2:30188804-30188823 | Msa0402250:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 30185766 | 30189823 | 30185766 | ID=Msa0402250;Name=Msa0402250 |
| chr3_2 | mRNA | 30185766 | 30189823 | 30185766 | ID=Msa0402250-mRNA-1;Parent=Msa0402250;Name=Msa0402250-mRNA-1;_AED=0.27;_eAED=0.27;_QI=179|1|0.8|1|1|1|5|0|542 |
| chr3_2 | exon | 30185766 | 30186267 | 30185766 | ID=Msa0402250-mRNA-1:exon:6045;Parent=Msa0402250-mRNA-1 |
| chr3_2 | exon | 30186808 | 30186943 | 30186808 | ID=Msa0402250-mRNA-1:exon:6046;Parent=Msa0402250-mRNA-1 |
| chr3_2 | exon | 30187094 | 30187146 | 30187094 | ID=Msa0402250-mRNA-1:exon:6047;Parent=Msa0402250-mRNA-1 |
| chr3_2 | exon | 30187320 | 30187410 | 30187320 | ID=Msa0402250-mRNA-1:exon:6048;Parent=Msa0402250-mRNA-1 |
| chr3_2 | exon | 30188798 | 30189823 | 30188798 | ID=Msa0402250-mRNA-1:exon:6049;Parent=Msa0402250-mRNA-1 |
| chr3_2 | five_prime_UTR | 30185766 | 30185944 | 30185766 | ID=Msa0402250-mRNA-1:five_prime_utr;Parent=Msa0402250-mRNA-1 |
| chr3_2 | CDS | 30185945 | 30186267 | 30185945 | ID=Msa0402250-mRNA-1:cds;Parent=Msa0402250-mRNA-1 |
| chr3_2 | CDS | 30186808 | 30186943 | 30186808 | ID=Msa0402250-mRNA-1:cds;Parent=Msa0402250-mRNA-1 |
| chr3_2 | CDS | 30187094 | 30187146 | 30187094 | ID=Msa0402250-mRNA-1:cds;Parent=Msa0402250-mRNA-1 |
| chr3_2 | CDS | 30187320 | 30187410 | 30187320 | ID=Msa0402250-mRNA-1:cds;Parent=Msa0402250-mRNA-1 |
| chr3_2 | CDS | 30188798 | 30189823 | 30188798 | ID=Msa0402250-mRNA-1:cds;Parent=Msa0402250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
