Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0355190 | XP_013468026.1 | 96.679 | 542 | 18 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1082 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0355190 | A0A072VKV4 | 96.679 | 542 | 18 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1082 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024610 | Msa0355190 | 0.868495 | 6.258247e-66 | -8.615850e-47 |
| Msa0115540 | Msa0355190 | 0.802888 | 4.530978e-49 | -8.615850e-47 |
| Msa0204770 | Msa0355190 | 0.813840 | 2.088192e-51 | -8.615850e-47 |
| Msa0355170 | Msa0355190 | 0.964302 | 3.719469e-123 | -8.615850e-47 |
| Msa0355180 | Msa0355190 | 0.976684 | 2.680263e-142 | -8.615850e-47 |
| Msa0355190 | Msa0355200 | 0.809216 | 2.111599e-50 | -8.615850e-47 |
| Msa0355190 | Msa0402240 | 0.977954 | 7.966693e-145 | -8.615850e-47 |
| Msa0355190 | Msa0402250 | 0.981019 | 1.399664e-151 | -8.615850e-47 |
| Msa0355190 | Msa0708900 | 0.945072 | 6.038079e-104 | -8.615850e-47 |
| Msa0355190 | Msa0708910 | 0.936588 | 1.364839e-97 | -8.615850e-47 |
| Msa0355190 | Msa0806260 | 0.815110 | 1.093164e-51 | -8.615850e-47 |
| Msa0355190 | Msa0806270 | 0.819355 | 1.213219e-52 | -8.615850e-47 |
| Msa0355190 | Msa0806280 | 0.821888 | 3.178154e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0355190 | MtrunA17_Chr1g0178981 | 96.679 | 542 | 18 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1082 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0355190 | AT1G19485.1 | 35.378 | 489 | 204 | 16 | 62 | 542 | 8 | 392 | 1.89e-69 | 239 |
| Msa0355190 | AT1G19485.2 | 35.378 | 489 | 204 | 16 | 62 | 542 | 8 | 392 | 1.89e-69 | 239 |
Find 131 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATTGGTTCTCACAATT+TGG | 0.152126 | 3_1:-29017349 | None:intergenic |
| TGGTTCATCTTATCACAAAA+TGG | 0.221693 | 3_1:+29016907 | Msa0355190:CDS |
| TATGGTGTCTTCTAAATATC+AGG | 0.232318 | 3_1:+29016963 | Msa0355190:CDS |
| AATAATGGCCTACTTGTATC+TGG | 0.238881 | 3_1:-29017643 | None:intergenic |
| TGTATTCGCAGCAGCTTTCT+TGG | 0.251698 | 3_1:-29017485 | None:intergenic |
| ACCTTTCACAAAAGGGATTA+AGG | 0.259506 | 3_1:+29013907 | Msa0355190:five_prime_UTR |
| GTATGCAGAAGCAGCTTTCT+TGG | 0.268262 | 3_1:-29017557 | None:intergenic |
| ACTCTCTTGTTTGCAATTGC+AGG | 0.291928 | 3_1:-29014004 | None:intergenic |
| GCATTCTTTCCCTTTGTATT+CGG | 0.294913 | 3_1:-29017535 | None:intergenic |
| ATTAGGTTTACTTACGGAAT+TGG | 0.296469 | 3_1:+29014925 | Msa0355190:CDS |
| GGGCTATCTTGCTGTCTTGT+TGG | 0.306280 | 3_1:+29017861 | Msa0355190:CDS |
| GGCTATCTTGCTGTCTTGTT+GGG | 0.307911 | 3_1:+29017862 | Msa0355190:CDS |
| AATATCCATCTAAAAGCATT+AGG | 0.316447 | 3_1:+29014908 | Msa0355190:CDS |
| CAGGGTTTGAATATCAGTTC+TGG | 0.319518 | 3_1:+29013965 | Msa0355190:five_prime_UTR |
| AAAATGGGTGCCTCACTTAC+TGG | 0.325896 | 3_1:+29016923 | Msa0355190:CDS |
| ATTTCTCCAGATGTAGTTCC+TGG | 0.344586 | 3_1:+29017409 | Msa0355190:CDS |
| GAACAGTAAGAGGAACAAAT+TGG | 0.352749 | 3_1:-29017363 | None:intergenic |
| GAAATAAATTCAGCTGAATC+TGG | 0.353877 | 3_1:-29017391 | None:intergenic |
| TAAATAGTGTGGCAAAAGTT+AGG | 0.358408 | 3_1:-29014048 | None:intergenic |
| CTTGTTGGGCAATGGATCTC+TGG | 0.375077 | 3_1:+29017876 | Msa0355190:CDS |
| TTCTCACACTGAATCAATAA+TGG | 0.377014 | 3_1:-29017658 | None:intergenic |
| ATACTTGGATTCTTGAGGTT+TGG | 0.380840 | 3_1:-29015211 | None:intergenic |
| GCAGAGGTGCCGTGCAAATA+TGG | 0.381854 | 3_1:+29016945 | Msa0355190:CDS |
| GTAGGTTGGATATTAATCAT+AGG | 0.390058 | 3_1:+29017605 | Msa0355190:CDS |
| GGGCATTTACCTTTCACAAA+AGG | 0.395838 | 3_1:+29013899 | Msa0355190:five_prime_UTR |
| GCGTTGTTTATCAACAGAAC+AGG | 0.403768 | 3_1:+29013929 | Msa0355190:five_prime_UTR |
| GGCATTTACCTTTCACAAAA+GGG | 0.424513 | 3_1:+29013900 | Msa0355190:five_prime_UTR |
| TTAGGTTTACTTACGGAATT+GGG | 0.426191 | 3_1:+29014926 | Msa0355190:CDS |
| ATATCAAACAAAGAAACCTT+AGG | 0.426697 | 3_1:-29014205 | None:intergenic |
| GATGCTTGAGGTTCCAATAC+AGG | 0.430718 | 3_1:-29017709 | None:intergenic |
| AGGGTTTGAATATCAGTTCT+GGG | 0.431046 | 3_1:+29013966 | Msa0355190:five_prime_UTR |
| GCTGTTGCTGCTCATCCGCC+TGG | 0.432574 | 3_1:+29016887 | Msa0355190:CDS |
| CTTGCTGTCTTGTTGGGCAA+TGG | 0.437681 | 3_1:+29017868 | Msa0355190:CDS |
| GAACTGCCAGGAACTACATC+TGG | 0.439083 | 3_1:-29017415 | None:intergenic |
| GTTCTGTATGGGCATTAGAT+TGG | 0.440759 | 3_1:+29015426 | Msa0355190:CDS |
| ACCACATGGTAGCCCTGTAT+TGG | 0.442858 | 3_1:+29017696 | Msa0355190:CDS |
| GCATCTGGTAGTGTCTCAAA+TGG | 0.442876 | 3_1:+29017223 | Msa0355190:CDS |
| AGGTGGCATGGGATGTCAAA+TGG | 0.446867 | 3_1:+29017797 | Msa0355190:CDS |
| TCACATTTAATTGAACAATC+AGG | 0.451414 | 3_1:-29015470 | None:intergenic |
| TGCAAAAGGAGGAGCAACTT+GGG | 0.454385 | 3_1:+29015184 | Msa0355190:CDS |
| TCAGGCTCCCCATGCATCCT+AGG | 0.455090 | 3_1:-29015452 | None:intergenic |
| TTCATCTGCCACTGTTCCTA+AGG | 0.455578 | 3_1:+29015005 | Msa0355190:CDS |
| CGAGAATTTCTTTGAAGACA+TGG | 0.460588 | 3_1:+29014234 | Msa0355190:CDS |
| AAAAGCATTAGGTTTACTTA+CGG | 0.463447 | 3_1:+29014919 | Msa0355190:CDS |
| CCACCTTTCCATTATGAGCT+AGG | 0.467563 | 3_1:-29017780 | None:intergenic |
| ATGCAAAAGGAGGAGCAACT+TGG | 0.467583 | 3_1:+29015183 | Msa0355190:CDS |
| TCCTCATGCAAGCATCGAAT+GGG | 0.467596 | 3_1:+29017841 | Msa0355190:CDS |
| GTGTCATGCCTAGCTCATAA+TGG | 0.467799 | 3_1:+29017772 | Msa0355190:CDS |
| ATCATATCTCCCCGGGAAGA+AGG | 0.467886 | 3_1:+29017003 | Msa0355190:CDS |
| GTCCACCTAGGTAAAGTAAA+GGG | 0.472023 | 3_1:+29013879 | Msa0355190:five_prime_UTR |
| GGTTCATCTTATCACAAAAT+GGG | 0.477171 | 3_1:+29016908 | Msa0355190:CDS |
| GGGCATTAGATTGGTGTCCT+AGG | 0.483270 | 3_1:+29015435 | Msa0355190:CDS |
| TCTGGAAGTTGAACAGTAAG+AGG | 0.486423 | 3_1:-29017373 | None:intergenic |
| CTCTTTGATATTAAATAGTG+TGG | 0.488495 | 3_1:-29014059 | None:intergenic |
| CTATCCACTGCTATTACAGT+TGG | 0.488965 | 3_1:-29017175 | None:intergenic |
| TCTTGTTGCAAGAAGTAGGT+TGG | 0.499166 | 3_1:+29017591 | Msa0355190:CDS |
| ATTGATTCAGTGTGAGAATG+AGG | 0.501894 | 3_1:+29017663 | Msa0355190:CDS |
| TGAATGTTGGAGGTTCTGTA+TGG | 0.503920 | 3_1:+29015414 | Msa0355190:CDS |
| ACAAATCGATAGAAATAAAG+AGG | 0.505265 | 3_1:+29017059 | Msa0355190:CDS |
| TGTCCACCTAGGTAAAGTAA+AGG | 0.506559 | 3_1:+29013878 | Msa0355190:five_prime_UTR |
| CTCATAATGGAAAGGTGGCA+TGG | 0.517043 | 3_1:+29017785 | Msa0355190:CDS |
| TATCAAACAAAGAAACCTTA+GGG | 0.521010 | 3_1:-29014204 | None:intergenic |
| TAGGTTGGATATTAATCATA+GGG | 0.524008 | 3_1:+29017606 | Msa0355190:CDS |
| AAACTCTTGTTGCAAGAAGT+AGG | 0.524383 | 3_1:+29017587 | Msa0355190:CDS |
| CTTAGGGTTAGCACCACTGC+TGG | 0.532612 | 3_1:-29014188 | None:intergenic |
| ATTGGTGTCCTAGGATGCAT+GGG | 0.532952 | 3_1:+29015444 | Msa0355190:CDS |
| TTCTTTCTAGGCCTTCCTCT+AGG | 0.533374 | 3_1:-29017082 | None:intergenic |
| TTCCTCATGCAAGCATCGAA+TGG | 0.535078 | 3_1:+29017840 | Msa0355190:CDS |
| GGGACCAAGTACATAGCATC+TGG | 0.536684 | 3_1:+29017208 | Msa0355190:CDS |
| ACTACCAGATGCTATGTACT+TGG | 0.537317 | 3_1:-29017212 | None:intergenic |
| GATTGGTGTCCTAGGATGCA+TGG | 0.541625 | 3_1:+29015443 | Msa0355190:CDS |
| CAGCAGTGGTGCTAACCCTA+AGG | 0.543146 | 3_1:+29014189 | Msa0355190:CDS |
| AAACCATACTTGGATTCTTG+AGG | 0.544459 | 3_1:-29015216 | None:intergenic |
| AGAGACTTTGTGATGAATGT+TGG | 0.551861 | 3_1:+29015401 | Msa0355190:intron |
| AAAGCTGCTGCGAATACAAA+GGG | 0.552131 | 3_1:+29017490 | Msa0355190:CDS |
| AAAGCTGCTCCGAATACAAA+GGG | 0.553544 | 3_1:+29017526 | Msa0355190:CDS |
| ATAATGGCCTACTTGTATCT+GGG | 0.555195 | 3_1:-29017642 | None:intergenic |
| CATCTGGTAGTGTCTCAAAT+GGG | 0.555891 | 3_1:+29017224 | Msa0355190:CDS |
| TTAAATGTGCAGAGAATGGA+AGG | 0.560081 | 3_1:+29014879 | Msa0355190:intron |
| GCTACAGCGGCAAATGATGA+AGG | 0.560213 | 3_1:+29014151 | Msa0355190:CDS |
| ACACCATTGCTAAACTCTGT+GGG | 0.562879 | 3_1:+29014257 | Msa0355190:CDS |
| TTCCCCACAGAGTTTAGCAA+TGG | 0.564444 | 3_1:-29014260 | None:intergenic |
| TAGAAGACACCATATTTGCA+CGG | 0.566075 | 3_1:-29016954 | None:intergenic |
| GTTGTAGCCCAGATACAAGT+AGG | 0.566508 | 3_1:+29017635 | Msa0355190:CDS |
| CGTTGTTTATCAACAGAACA+GGG | 0.567059 | 3_1:+29013930 | Msa0355190:five_prime_UTR |
| GACTTTGTGATGAATGTTGG+AGG | 0.568156 | 3_1:+29015404 | Msa0355190:CDS |
| GAAAGCTGCTCCGAATACAA+AGG | 0.568270 | 3_1:+29017525 | Msa0355190:CDS |
| TGCTGATGATTCTGCTACAG+CGG | 0.574927 | 3_1:+29014138 | Msa0355190:CDS |
| AAATAAAGAGGCCTAGAGGA+AGG | 0.580422 | 3_1:+29017071 | Msa0355190:CDS |
| TGCCCTTTACTTTACCTAGG+TGG | 0.580871 | 3_1:-29013881 | None:intergenic |
| TGATGTTCATCAGAACTGCC+AGG | 0.583511 | 3_1:-29017427 | None:intergenic |
| GGTGCCTCACTTACTGGCAG+AGG | 0.584837 | 3_1:+29016929 | Msa0355190:CDS |
| TCATAATGGAAAGGTGGCAT+GGG | 0.586605 | 3_1:+29017786 | Msa0355190:CDS |
| AAGAAGTATCATATCTCCCC+GGG | 0.588430 | 3_1:+29016996 | Msa0355190:CDS |
| GAATCCAACTGTAATAGCAG+TGG | 0.589763 | 3_1:+29017171 | Msa0355190:CDS |
| GAAAGCTGCTGCGAATACAA+AGG | 0.590265 | 3_1:+29017489 | Msa0355190:CDS |
| CAGTGGATAGTACAAATTGT+GGG | 0.590541 | 3_1:+29017188 | Msa0355190:CDS |
| ATGGTGTCTTCTAAATATCA+GGG | 0.592032 | 3_1:+29016964 | Msa0355190:CDS |
| ATGCTTGAGGTTCCAATACA+GGG | 0.598484 | 3_1:-29017708 | None:intergenic |
| TTATTTGAAATTGTCCACCT+AGG | 0.601577 | 3_1:+29013867 | Msa0355190:five_prime_UTR |
| GCAAATGATGAAGGTGGTGG+TGG | 0.602662 | 3_1:+29014160 | Msa0355190:CDS |
| TCAGCATAATATGCAAAAGG+AGG | 0.605517 | 3_1:+29015173 | Msa0355190:intron |
| AAACAAGAGAGTAATGGAAG+AGG | 0.607256 | 3_1:+29014015 | Msa0355190:exon |
| GAAGAAGTATCATATCTCCC+CGG | 0.607569 | 3_1:+29016995 | Msa0355190:CDS |
| AAATGCCCTTTACTTTACCT+AGG | 0.608444 | 3_1:-29013884 | None:intergenic |
| GGCACCTCTGCCAGTAAGTG+AGG | 0.611285 | 3_1:-29016933 | None:intergenic |
| GACACCATTGCTAAACTCTG+TGG | 0.614594 | 3_1:+29014256 | Msa0355190:CDS |
| GAGGAATCAAGATTGCTAAG+AGG | 0.614969 | 3_1:-29017823 | None:intergenic |
| AATTGCAAACAAGAGAGTAA+TGG | 0.617423 | 3_1:+29014009 | Msa0355190:exon |
| CCTAGCTCATAATGGAAAGG+TGG | 0.620737 | 3_1:+29017780 | Msa0355190:CDS |
| CAGAACTGATATTCAAACCC+TGG | 0.624538 | 3_1:-29013964 | None:intergenic |
| GCAGTGGATAGTACAAATTG+TGG | 0.626003 | 3_1:+29017187 | Msa0355190:CDS |
| ATGCCTAGCTCATAATGGAA+AGG | 0.628963 | 3_1:+29017777 | Msa0355190:CDS |
| TGATTGTTCAATTAAATGTG+AGG | 0.630368 | 3_1:+29015472 | Msa0355190:CDS |
| GCCCATTCGATGCTTGCATG+AGG | 0.635290 | 3_1:-29017842 | None:intergenic |
| GCTAGGCATGACACAACTCT+AGG | 0.640886 | 3_1:-29017763 | None:intergenic |
| GAATGTTGGAGGTTCTGTAT+GGG | 0.641333 | 3_1:+29015415 | Msa0355190:CDS |
| ATGGGACAAGTAGATGCTTG+AGG | 0.647867 | 3_1:-29017721 | None:intergenic |
| GCAAAAGGAGGAGCAACTTG+GGG | 0.648508 | 3_1:+29015185 | Msa0355190:CDS |
| ATAGAAATAAAGAGGCCTAG+AGG | 0.655432 | 3_1:+29017067 | Msa0355190:CDS |
| GCGGCAAATGATGAAGGTGG+TGG | 0.666480 | 3_1:+29014157 | Msa0355190:CDS |
| CACCATTGCTAAACTCTGTG+GGG | 0.668610 | 3_1:+29014258 | Msa0355190:CDS |
| GGTGGTGGTAGTACCAGCAG+TGG | 0.670189 | 3_1:+29014175 | Msa0355190:CDS |
| TGGCATGGGATGTCAAATGG+AGG | 0.678240 | 3_1:+29017800 | Msa0355190:CDS |
| GACTTGTACCTTAGGAACAG+TGG | 0.679559 | 3_1:-29015013 | None:intergenic |
| TCCAATACAGGGCTACCATG+TGG | 0.685481 | 3_1:-29017697 | None:intergenic |
| GAGGCAAATCATCAACCACA+TGG | 0.705993 | 3_1:+29017682 | Msa0355190:CDS |
| TTGGTGTCCTAGGATGCATG+GGG | 0.719461 | 3_1:+29015445 | Msa0355190:CDS |
| TTGTGATAAGATGAACCAGG+CGG | 0.737973 | 3_1:-29016902 | None:intergenic |
| ACAGCGGCAAATGATGAAGG+TGG | 0.745146 | 3_1:+29014154 | Msa0355190:CDS |
| ACAGTGGCAGATGAAAACTG+AGG | 0.800494 | 3_1:-29014997 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATTAGAGTAAAATAT+AGG | - | chr3_1:29015041-29015060 | None:intergenic | 10.0% |
| !!! | TAAGTATATATTTTGCTTTT+AGG | + | chr3_1:29015090-29015109 | Msa0355190:intron | 15.0% |
| !! | TAAAAGGATTTAGATTTAAA+TGG | + | chr3_1:29016176-29016195 | Msa0355190:intron | 15.0% |
| !! | TTTACTACATATATGAATAT+AGG | - | chr3_1:29016761-29016780 | None:intergenic | 15.0% |
| !! | TCTTCAAGTAAATATTTGAT+TGG | - | chr3_1:29014691-29014710 | None:intergenic | 20.0% |
| !! | AATCAAATATTTACTTGAAG+AGG | + | chr3_1:29014690-29014709 | Msa0355190:intron | 20.0% |
| !! | ATCAAATATTTACTTGAAGA+GGG | + | chr3_1:29014691-29014710 | Msa0355190:intron | 20.0% |
| !! | AACCAAAAAAAGAAATTAAG+GGG | - | chr3_1:29014854-29014873 | None:intergenic | 20.0% |
| !! | CAACCAAAAAAAGAAATTAA+GGG | - | chr3_1:29014855-29014874 | None:intergenic | 20.0% |
| !! | TCAACCAAAAAAAGAAATTA+AGG | - | chr3_1:29014856-29014875 | None:intergenic | 20.0% |
| !! | AAATTAGAGTAAAATATAGG+AGG | - | chr3_1:29015038-29015057 | None:intergenic | 20.0% |
| !! | TTTATTCAATGACATTTCTA+TGG | + | chr3_1:29015262-29015281 | Msa0355190:intron | 20.0% |
| !!! | ATATTGTTTTGTTACTTCTT+TGG | + | chr3_1:29015550-29015569 | Msa0355190:intron | 20.0% |
| !!! | TATTGTTTTGTTACTTCTTT+GGG | + | chr3_1:29015551-29015570 | Msa0355190:intron | 20.0% |
| !!! | AGATTTTATTTGAAGTTTGA+TGG | + | chr3_1:29015655-29015674 | Msa0355190:intron | 20.0% |
| !!! | TATTGTTCTTTTAAGAGTTA+AGG | + | chr3_1:29015714-29015733 | Msa0355190:intron | 20.0% |
| !!! | ATTGTTCTTTTAAGAGTTAA+GGG | + | chr3_1:29015715-29015734 | Msa0355190:intron | 20.0% |
| !! | TTCTTAAATTGTGTTGAATT+TGG | - | chr3_1:29015873-29015892 | None:intergenic | 20.0% |
| !!! | TCAACACAATTTAAGAATTT+TGG | + | chr3_1:29015876-29015895 | Msa0355190:intron | 20.0% |
| !!! | TTTCATTGTTATTTGTTTCA+TGG | - | chr3_1:29015904-29015923 | None:intergenic | 20.0% |
| !!! | AGCACATATTTTTGAAAAAA+TGG | + | chr3_1:29016079-29016098 | Msa0355190:intron | 20.0% |
| !!! | TTTTATTCCAAACTGTTAAA+AGG | + | chr3_1:29016160-29016179 | Msa0355190:intron | 20.0% |
| !! | TTTATCACTAGAAATGATTT+AGG | + | chr3_1:29016199-29016218 | Msa0355190:intron | 20.0% |
| !! | CATAATTAACAAAAGGATTT+AGG | - | chr3_1:29016588-29016607 | None:intergenic | 20.0% |
| !!! | AATCCTTTTGTTAATTATGA+TGG | + | chr3_1:29016589-29016608 | Msa0355190:intron | 20.0% |
| !! | TATCAAAATAGGTATATGTA+TGG | - | chr3_1:29016704-29016723 | None:intergenic | 20.0% |
| !! | TTACATACAAGAGTAAAAAA+AGG | + | chr3_1:29017278-29017297 | Msa0355190:CDS | 20.0% |
| !!! | ACAACAATTTTCTAATACAA+AGG | + | chr3_1:29017453-29017472 | Msa0355190:CDS | 20.0% |
| !!! | CAACAATTTTCTAATACAAA+GGG | + | chr3_1:29017454-29017473 | Msa0355190:CDS | 20.0% |
| ! | CTCTTTGATATTAAATAGTG+TGG | - | chr3_1:29014062-29014081 | None:intergenic | 25.0% |
| ! | TATCAAACAAAGAAACCTTA+GGG | - | chr3_1:29014207-29014226 | None:intergenic | 25.0% |
| ! | ATATCAAACAAAGAAACCTT+AGG | - | chr3_1:29014208-29014227 | None:intergenic | 25.0% |
| ! | ATCATACCTTAAAAAAGTGA+CGG | - | chr3_1:29014338-29014357 | None:intergenic | 25.0% |
| ! | ATAATCATTGAATGACTAAG+TGG | + | chr3_1:29014646-29014665 | Msa0355190:intron | 25.0% |
| !!! | AACCCCTTAATTTCTTTTTT+TGG | + | chr3_1:29014849-29014868 | Msa0355190:intron | 25.0% |
| !!! | AATATCCATCTAAAAGCATT+AGG | + | chr3_1:29014908-29014927 | Msa0355190:CDS | 25.0% |
| !!! | AAAAGCATTAGGTTTACTTA+CGG | + | chr3_1:29014919-29014938 | Msa0355190:CDS | 25.0% |
| !! | TTTTCAGCATAATATGCAAA+AGG | + | chr3_1:29015170-29015189 | Msa0355190:intron | 25.0% |
| ! | AGTTAATATCAAACCATACT+TGG | - | chr3_1:29015229-29015248 | None:intergenic | 25.0% |
| !!! | GATATTAACTTATTTTGTCG+TGG | + | chr3_1:29015239-29015258 | Msa0355190:intron | 25.0% |
| ! | TCACATTTAATTGAACAATC+AGG | - | chr3_1:29015473-29015492 | None:intergenic | 25.0% |
| ! | TGATTGTTCAATTAAATGTG+AGG | + | chr3_1:29015472-29015491 | Msa0355190:CDS | 25.0% |
| !! | TCTAAATCCTTTTAACAGTT+TGG | - | chr3_1:29016170-29016189 | None:intergenic | 25.0% |
| ! | CTAAATAGTATACACAATTG+CGG | + | chr3_1:29016336-29016355 | Msa0355190:intron | 25.0% |
| ! | AAAAAAAGTGAACGACAAAA+AGG | - | chr3_1:29016437-29016456 | None:intergenic | 25.0% |
| ! | TCTCCATCATAATTAACAAA+AGG | - | chr3_1:29016595-29016614 | None:intergenic | 25.0% |
| !!! | TACCTATTTTGATAGTTTTG+TGG | + | chr3_1:29016710-29016729 | Msa0355190:intron | 25.0% |
| ! | ACAAATCGATAGAAATAAAG+AGG | + | chr3_1:29017059-29017078 | Msa0355190:CDS | 25.0% |
| !!! | CTTTTTCTCTTGTTTGTAAT+AGG | - | chr3_1:29017136-29017155 | None:intergenic | 25.0% |
| ! | ATTACAAACAAGAGAAAAAG+AGG | + | chr3_1:29017136-29017155 | Msa0355190:CDS | 25.0% |
| !!! | ATTACAGTTGGATTCTTTTT+TGG | - | chr3_1:29017166-29017185 | None:intergenic | 25.0% |
| !! | CCATCTTTTGAATTCTTTTT+CGG | - | chr3_1:29017316-29017335 | None:intergenic | 25.0% |
| !! | TAGGTTGGATATTAATCATA+GGG | + | chr3_1:29017606-29017625 | Msa0355190:CDS | 25.0% |
| ! | TTATTTGAAATTGTCCACCT+AGG | + | chr3_1:29013867-29013886 | Msa0355190:five_prime_UTR | 30.0% |
| AATTGCAAACAAGAGAGTAA+TGG | + | chr3_1:29014009-29014028 | Msa0355190:exon | 30.0% | |
| TAAATAGTGTGGCAAAAGTT+AGG | - | chr3_1:29014051-29014070 | None:intergenic | 30.0% | |
| GAAAAAGAAGAAAAAGACGA+AGG | + | chr3_1:29014093-29014112 | Msa0355190:CDS | 30.0% | |
| !!! | TTTCTTCCGTCACTTTTTTA+AGG | + | chr3_1:29014329-29014348 | Msa0355190:CDS | 30.0% |
| GTTAATCTGTTGTGAAGAAA+TGG | + | chr3_1:29014401-29014420 | Msa0355190:intron | 30.0% | |
| TTATAACCAACTCAAAGAGT+TGG | - | chr3_1:29014565-29014584 | None:intergenic | 30.0% | |
| !! | AACTCTTTGAGTTGGTTATA+AGG | + | chr3_1:29014564-29014583 | Msa0355190:intron | 30.0% |
| GATTGGATAGACATAATTGT+AGG | - | chr3_1:29014674-29014693 | None:intergenic | 30.0% | |
| AATATTTACTTGAAGAGGGA+AGG | + | chr3_1:29014695-29014714 | Msa0355190:intron | 30.0% | |
| ATATTTACTTGAAGAGGGAA+GGG | + | chr3_1:29014696-29014715 | Msa0355190:intron | 30.0% | |
| AAAGAAATTAAGGGGTTGTT+TGG | - | chr3_1:29014846-29014865 | None:intergenic | 30.0% | |
| ! | GTAAACCTAATGCTTTTAGA+TGG | - | chr3_1:29014916-29014935 | None:intergenic | 30.0% |
| ATTAGGTTTACTTACGGAAT+TGG | + | chr3_1:29014925-29014944 | Msa0355190:CDS | 30.0% | |
| TTAGGTTTACTTACGGAATT+GGG | + | chr3_1:29014926-29014945 | Msa0355190:CDS | 30.0% | |
| CTCTAATTTAATTGTTTGCC+AGG | + | chr3_1:29015049-29015068 | Msa0355190:intron | 30.0% | |
| ATATACTATAACTTCATGCC+TGG | - | chr3_1:29015070-29015089 | None:intergenic | 30.0% | |
| ! | TCGCTGATTATTGTTTAACT+TGG | + | chr3_1:29015359-29015378 | Msa0355190:intron | 30.0% |
| !! | AGTCAATTCTGTCTTTTTCA+TGG | + | chr3_1:29015604-29015623 | Msa0355190:intron | 30.0% |
| !! | TTATTTGAAGTTTGATGGTG+AGG | + | chr3_1:29015660-29015679 | Msa0355190:intron | 30.0% |
| TAGCAGTAAAACATAGTGTA+CGG | + | chr3_1:29015783-29015802 | Msa0355190:intron | 30.0% | |
| TACGGCATATATTATAAGCA+AGG | + | chr3_1:29015801-29015820 | Msa0355190:intron | 30.0% | |
| ACGGCATATATTATAAGCAA+GGG | + | chr3_1:29015802-29015821 | Msa0355190:intron | 30.0% | |
| ACATAATTGTAGAATAGAGG+TGG | + | chr3_1:29015827-29015846 | Msa0355190:intron | 30.0% | |
| ATTAACCTAAAGGATTCAAG+TGG | + | chr3_1:29015933-29015952 | Msa0355190:intron | 30.0% | |
| TTAACCTAAAGGATTCAAGT+GGG | + | chr3_1:29015934-29015953 | Msa0355190:intron | 30.0% | |
| AATGCGTTAAAGAGAAAGTT+TGG | + | chr3_1:29016054-29016073 | Msa0355190:intron | 30.0% | |
| ATGCGTTAAAGAGAAAGTTT+GGG | + | chr3_1:29016055-29016074 | Msa0355190:intron | 30.0% | |
| AATAGGTATATGTATGGAGT+AGG | - | chr3_1:29016698-29016717 | None:intergenic | 30.0% | |
| GACCACAAAACTATCAAAAT+AGG | - | chr3_1:29016715-29016734 | None:intergenic | 30.0% | |
| TAAACCAAGTATCAGAAAGA+AGG | - | chr3_1:29016860-29016879 | None:intergenic | 30.0% | |
| ! | ATTTTGTGATAAGATGAACC+AGG | - | chr3_1:29016908-29016927 | None:intergenic | 30.0% |
| TGGTTCATCTTATCACAAAA+TGG | + | chr3_1:29016907-29016926 | Msa0355190:CDS | 30.0% | |
| GGTTCATCTTATCACAAAAT+GGG | + | chr3_1:29016908-29016927 | Msa0355190:CDS | 30.0% | |
| TATGGTGTCTTCTAAATATC+AGG | + | chr3_1:29016963-29016982 | Msa0355190:CDS | 30.0% | |
| ATGGTGTCTTCTAAATATCA+GGG | + | chr3_1:29016964-29016983 | Msa0355190:CDS | 30.0% | |
| ! | TTTTCAGTAGGATTCTTTCT+AGG | - | chr3_1:29017097-29017116 | None:intergenic | 30.0% |
| AAGAGTAAAAAAAGGCCTAA+AGG | + | chr3_1:29017286-29017305 | Msa0355190:CDS | 30.0% | |
| CCGAAAAAGAATTCAAAAGA+TGG | + | chr3_1:29017313-29017332 | Msa0355190:CDS | 30.0% | |
| ! | ACAAATTGGTTCTCACAATT+TGG | - | chr3_1:29017352-29017371 | None:intergenic | 30.0% |
| GAAATAAATTCAGCTGAATC+TGG | - | chr3_1:29017394-29017413 | None:intergenic | 30.0% | |
| ! | GTAGGTTGGATATTAATCAT+AGG | + | chr3_1:29017605-29017624 | Msa0355190:CDS | 30.0% |
| TTCTCACACTGAATCAATAA+TGG | - | chr3_1:29017661-29017680 | None:intergenic | 30.0% | |
| ! | AATGCTACATTTTGTGGAAT+GGG | - | chr3_1:29017742-29017761 | None:intergenic | 30.0% |
| AAATGCCCTTTACTTTACCT+AGG | - | chr3_1:29013887-29013906 | None:intergenic | 35.0% | |
| GGCATTTACCTTTCACAAAA+GGG | + | chr3_1:29013900-29013919 | Msa0355190:five_prime_UTR | 35.0% | |
| ACCTTTCACAAAAGGGATTA+AGG | + | chr3_1:29013907-29013926 | Msa0355190:five_prime_UTR | 35.0% | |
| CGTTGTTTATCAACAGAACA+GGG | + | chr3_1:29013930-29013949 | Msa0355190:five_prime_UTR | 35.0% | |
| AGGGTTTGAATATCAGTTCT+GGG | + | chr3_1:29013966-29013985 | Msa0355190:five_prime_UTR | 35.0% | |
| ! | AAACAAGAGAGTAATGGAAG+AGG | + | chr3_1:29014015-29014034 | Msa0355190:exon | 35.0% |
| ! | CGAGAATTTCTTTGAAGACA+TGG | + | chr3_1:29014234-29014253 | Msa0355190:CDS | 35.0% |
| TGTTCTTGAGCAATACGATT+TGG | + | chr3_1:29014435-29014454 | Msa0355190:intron | 35.0% | |
| ! | AGAGTTGGTTAGGATTGATT+AGG | - | chr3_1:29014550-29014569 | None:intergenic | 35.0% |
| TATGAACCGAATCTCTAAGT+TGG | + | chr3_1:29014763-29014782 | Msa0355190:intron | 35.0% | |
| ATGAACCGAATCTCTAAGTT+GGG | + | chr3_1:29014764-29014783 | Msa0355190:intron | 35.0% | |
| ACCATTAAATGTGCAGAGAA+TGG | + | chr3_1:29014875-29014894 | Msa0355190:intron | 35.0% | |
| TCCATTCTCTGCACATTTAA+TGG | - | chr3_1:29014879-29014898 | None:intergenic | 35.0% | |
| TTAAATGTGCAGAGAATGGA+AGG | + | chr3_1:29014879-29014898 | Msa0355190:intron | 35.0% | |
| TCAGCATAATATGCAAAAGG+AGG | + | chr3_1:29015173-29015192 | Msa0355190:intron | 35.0% | |
| ATACTTGGATTCTTGAGGTT+TGG | - | chr3_1:29015214-29015233 | None:intergenic | 35.0% | |
| AAACCTCAAGAATCCAAGTA+TGG | + | chr3_1:29015213-29015232 | Msa0355190:intron | 35.0% | |
| AAACCATACTTGGATTCTTG+AGG | - | chr3_1:29015219-29015238 | None:intergenic | 35.0% | |
| AACTTGGCTAAACACTTTGT+TGG | + | chr3_1:29015375-29015394 | Msa0355190:intron | 35.0% | |
| AGAGACTTTGTGATGAATGT+TGG | + | chr3_1:29015401-29015420 | Msa0355190:intron | 35.0% | |
| TGTGATGTTTCATACGTTGA+GGG | + | chr3_1:29015632-29015651 | Msa0355190:intron | 35.0% | |
| CTCTTAAAAGAACAATACGC+TGG | - | chr3_1:29015711-29015730 | None:intergenic | 35.0% | |
| CGGCATATATTATAAGCAAG+GGG | + | chr3_1:29015803-29015822 | Msa0355190:intron | 35.0% | |
| GGCACATAATTGTAGAATAG+AGG | + | chr3_1:29015824-29015843 | Msa0355190:intron | 35.0% | |
| GTGTTGAATTTGGTATGCTA+TGG | - | chr3_1:29015863-29015882 | None:intergenic | 35.0% | |
| ACAGAGCGAAATTAACCTAA+AGG | + | chr3_1:29015923-29015942 | Msa0355190:intron | 35.0% | |
| ! | GTAATTTTCGATCACAAAGC+AGG | - | chr3_1:29015981-29016000 | None:intergenic | 35.0% |
| AAATGGAAAAACACTGCCTT+AGG | + | chr3_1:29016096-29016115 | Msa0355190:intron | 35.0% | |
| GATATAGTACTATTGCTGAG+AGG | - | chr3_1:29016283-29016302 | None:intergenic | 35.0% | |
| CTATCAAATAGCGACTATAG+TGG | - | chr3_1:29016307-29016326 | None:intergenic | 35.0% | |
| GACATTTGGCATACAGAAAA+TGG | - | chr3_1:29016505-29016524 | None:intergenic | 35.0% | |
| ! | GTTAATTATGATGGAGACAC+TGG | + | chr3_1:29016598-29016617 | Msa0355190:intron | 35.0% |
| TTATTTCCTACTTCCAAGTC+TGG | - | chr3_1:29016804-29016823 | None:intergenic | 35.0% | |
| ATGACCTTCTTTCTGATACT+TGG | + | chr3_1:29016853-29016872 | Msa0355190:intron | 35.0% | |
| TAGAAGACACCATATTTGCA+CGG | - | chr3_1:29016957-29016976 | None:intergenic | 35.0% | |
| !!! | AGGTTTTTTTTCCTTCTTCC+CGG | - | chr3_1:29017017-29017036 | None:intergenic | 35.0% |
| !!! | TTTGTGCACGTGTCTTTTTT+AGG | - | chr3_1:29017037-29017056 | None:intergenic | 35.0% |
| ATAGAAATAAAGAGGCCTAG+AGG | + | chr3_1:29017067-29017086 | Msa0355190:CDS | 35.0% | |
| !! | ATTGCTTCGTTGTTTTCAGT+AGG | - | chr3_1:29017109-29017128 | None:intergenic | 35.0% |
| CAGTGGATAGTACAAATTGT+GGG | + | chr3_1:29017188-29017207 | Msa0355190:CDS | 35.0% | |
| !!! | TTCTTTTTCGGTCTTCCTTT+AGG | - | chr3_1:29017304-29017323 | None:intergenic | 35.0% |
| GAACAGTAAGAGGAACAAAT+TGG | - | chr3_1:29017366-29017385 | None:intergenic | 35.0% | |
| GCATTCTTTCCCTTTGTATT+CGG | - | chr3_1:29017466-29017485 | None:intergenic | 35.0% | |
| AAACTCTTGTTGCAAGAAGT+AGG | + | chr3_1:29017587-29017606 | Msa0355190:CDS | 35.0% | |
| ATAATGGCCTACTTGTATCT+GGG | - | chr3_1:29017645-29017664 | None:intergenic | 35.0% | |
| AATAATGGCCTACTTGTATC+TGG | - | chr3_1:29017646-29017665 | None:intergenic | 35.0% | |
| ! | ATTGATTCAGTGTGAGAATG+AGG | + | chr3_1:29017663-29017682 | Msa0355190:CDS | 35.0% |
| ! | CAATGCTACATTTTGTGGAA+TGG | - | chr3_1:29017743-29017762 | None:intergenic | 35.0% |
| TGTCCACCTAGGTAAAGTAA+AGG | + | chr3_1:29013878-29013897 | Msa0355190:five_prime_UTR | 40.0% | |
| GTCCACCTAGGTAAAGTAAA+GGG | + | chr3_1:29013879-29013898 | Msa0355190:five_prime_UTR | 40.0% | |
| GGGCATTTACCTTTCACAAA+AGG | + | chr3_1:29013899-29013918 | Msa0355190:five_prime_UTR | 40.0% | |
| ! | GCCTTAATCCCTTTTGTGAA+AGG | - | chr3_1:29013911-29013930 | None:intergenic | 40.0% |
| GCGTTGTTTATCAACAGAAC+AGG | + | chr3_1:29013929-29013948 | Msa0355190:five_prime_UTR | 40.0% | |
| CAGAACTGATATTCAAACCC+TGG | - | chr3_1:29013967-29013986 | None:intergenic | 40.0% | |
| CAGGGTTTGAATATCAGTTC+TGG | + | chr3_1:29013965-29013984 | Msa0355190:five_prime_UTR | 40.0% | |
| ! | ACTCTCTTGTTTGCAATTGC+AGG | - | chr3_1:29014007-29014026 | None:intergenic | 40.0% |
| ACACCATTGCTAAACTCTGT+GGG | + | chr3_1:29014257-29014276 | Msa0355190:CDS | 40.0% | |
| ATGTATCAGCTATGATGCTC+TGG | + | chr3_1:29014475-29014494 | Msa0355190:intron | 40.0% | |
| TCCTAACCAACTCTTTGAGT+TGG | + | chr3_1:29014556-29014575 | Msa0355190:intron | 40.0% | |
| ! | ACCAACTCAAAGAGTTGGTT+AGG | - | chr3_1:29014560-29014579 | None:intergenic | 40.0% |
| AGGCAGTGCTAATCTATGTA+AGG | + | chr3_1:29014584-29014603 | Msa0355190:intron | 40.0% | |
| CGAAACCCAACTTAGAGATT+CGG | - | chr3_1:29014772-29014791 | None:intergenic | 40.0% | |
| TATAGGAGGACTTGTACCTT+AGG | - | chr3_1:29015024-29015043 | None:intergenic | 40.0% | |
| GACTTTGTGATGAATGTTGG+AGG | + | chr3_1:29015404-29015423 | Msa0355190:CDS | 40.0% | |
| TGAATGTTGGAGGTTCTGTA+TGG | + | chr3_1:29015414-29015433 | Msa0355190:CDS | 40.0% | |
| GAATGTTGGAGGTTCTGTAT+GGG | + | chr3_1:29015415-29015434 | Msa0355190:CDS | 40.0% | |
| GTTCTGTATGGGCATTAGAT+TGG | + | chr3_1:29015426-29015445 | Msa0355190:CDS | 40.0% | |
| GTGTGATGTTTCATACGTTG+AGG | + | chr3_1:29015631-29015650 | Msa0355190:intron | 40.0% | |
| !! | TGAAGTTTGATGGTGAGGTA+AGG | + | chr3_1:29015665-29015684 | Msa0355190:intron | 40.0% |
| !! | GAAGTTTGATGGTGAGGTAA+GGG | + | chr3_1:29015666-29015685 | Msa0355190:intron | 40.0% |
| !! | AAGTTTGATGGTGAGGTAAG+GGG | + | chr3_1:29015667-29015686 | Msa0355190:intron | 40.0% |
| GCTACTTCTACTCACACATT+CGG | - | chr3_1:29015767-29015786 | None:intergenic | 40.0% | |
| ATACATGTCCAAACCACCTA+AGG | - | chr3_1:29016115-29016134 | None:intergenic | 40.0% | |
| ! | TGGTTTGGACATGTATTGAG+AGG | + | chr3_1:29016119-29016138 | Msa0355190:intron | 40.0% |
| GTGTTGTCAATCTCAGATAG+TGG | + | chr3_1:29016245-29016264 | Msa0355190:intron | 40.0% | |
| ! | CACTATAACGTGGTGGAATT+TGG | - | chr3_1:29016367-29016386 | None:intergenic | 40.0% |
| CAAATTCCACCACGTTATAG+TGG | + | chr3_1:29016365-29016384 | Msa0355190:intron | 40.0% | |
| GATGCTATACCACTATAACG+TGG | - | chr3_1:29016377-29016396 | None:intergenic | 40.0% | |
| AAGGAATTACCCACATCACA+GGG | - | chr3_1:29016418-29016437 | None:intergenic | 40.0% | |
| AAAGGAATTACCCACATCAC+AGG | - | chr3_1:29016419-29016438 | None:intergenic | 40.0% | |
| TTGGCATACAGAAAATGGTG+AGG | - | chr3_1:29016500-29016519 | None:intergenic | 40.0% | |
| ! | CATGGTGTCAACTAGCTATT+AGG | - | chr3_1:29016545-29016564 | None:intergenic | 40.0% |
| CACCATGTTAAATTACCACC+TGG | + | chr3_1:29016558-29016577 | Msa0355190:intron | 40.0% | |
| AGCCAGGTGGTAATTTAACA+TGG | - | chr3_1:29016563-29016582 | None:intergenic | 40.0% | |
| CAAAAGGATTTAGGTAAGCC+AGG | - | chr3_1:29016579-29016598 | None:intergenic | 40.0% | |
| ACTTACCTTTGTTCCAGACT+TGG | + | chr3_1:29016788-29016807 | Msa0355190:intron | 40.0% | |
| ! | TACTTCCAAGTCTGGAACAA+AGG | - | chr3_1:29016796-29016815 | None:intergenic | 40.0% |
| TTTGTTCCAGACTTGGAAGT+AGG | + | chr3_1:29016795-29016814 | Msa0355190:intron | 40.0% | |
| TTGTGATAAGATGAACCAGG+CGG | - | chr3_1:29016905-29016924 | None:intergenic | 40.0% | |
| !! | GAAGAAGTATCATATCTCCC+CGG | + | chr3_1:29016995-29017014 | Msa0355190:CDS | 40.0% |
| !! | AAGAAGTATCATATCTCCCC+GGG | + | chr3_1:29016996-29017015 | Msa0355190:CDS | 40.0% |
| !!! | GTTTTTTTTCCTTCTTCCCG+GGG | - | chr3_1:29017015-29017034 | None:intergenic | 40.0% |
| !!! | GGTTTTTTTTCCTTCTTCCC+GGG | - | chr3_1:29017016-29017035 | None:intergenic | 40.0% |
| AAATAAAGAGGCCTAGAGGA+AGG | + | chr3_1:29017071-29017090 | Msa0355190:CDS | 40.0% | |
| GAATCCAACTGTAATAGCAG+TGG | + | chr3_1:29017171-29017190 | Msa0355190:CDS | 40.0% | |
| CTATCCACTGCTATTACAGT+TGG | - | chr3_1:29017178-29017197 | None:intergenic | 40.0% | |
| GCAGTGGATAGTACAAATTG+TGG | + | chr3_1:29017187-29017206 | Msa0355190:CDS | 40.0% | |
| ACTACCAGATGCTATGTACT+TGG | - | chr3_1:29017215-29017234 | None:intergenic | 40.0% | |
| ! | CATCTGGTAGTGTCTCAAAT+GGG | + | chr3_1:29017224-29017243 | Msa0355190:CDS | 40.0% |
| TCTGGAAGTTGAACAGTAAG+AGG | - | chr3_1:29017376-29017395 | None:intergenic | 40.0% | |
| ATTTCTCCAGATGTAGTTCC+TGG | + | chr3_1:29017409-29017428 | Msa0355190:CDS | 40.0% | |
| AAAGCTGCTGCGAATACAAA+GGG | + | chr3_1:29017490-29017509 | Msa0355190:CDS | 40.0% | |
| AAAGCTGCTCCGAATACAAA+GGG | + | chr3_1:29017526-29017545 | Msa0355190:CDS | 40.0% | |
| TCTTGTTGCAAGAAGTAGGT+TGG | + | chr3_1:29017591-29017610 | Msa0355190:CDS | 40.0% | |
| ATGCTTGAGGTTCCAATACA+GGG | - | chr3_1:29017711-29017730 | None:intergenic | 40.0% | |
| ! | CTAGGCAATGCTACATTTTG+TGG | - | chr3_1:29017748-29017767 | None:intergenic | 40.0% |
| ! | ATGCCTAGCTCATAATGGAA+AGG | + | chr3_1:29017777-29017796 | Msa0355190:CDS | 40.0% |
| ! | TCATAATGGAAAGGTGGCAT+GGG | + | chr3_1:29017786-29017805 | Msa0355190:CDS | 40.0% |
| GAGGAATCAAGATTGCTAAG+AGG | - | chr3_1:29017826-29017845 | None:intergenic | 40.0% | |
| TGCCCTTTACTTTACCTAGG+TGG | - | chr3_1:29013884-29013903 | None:intergenic | 45.0% | |
| !!! | AACAGGGTTTTAGCTTGTCC+AGG | + | chr3_1:29013946-29013965 | Msa0355190:five_prime_UTR | 45.0% |
| !!! | ACAGGGTTTTAGCTTGTCCA+GGG | + | chr3_1:29013947-29013966 | Msa0355190:five_prime_UTR | 45.0% |
| TGCTGATGATTCTGCTACAG+CGG | + | chr3_1:29014138-29014157 | Msa0355190:CDS | 45.0% | |
| GACACCATTGCTAAACTCTG+TGG | + | chr3_1:29014256-29014275 | Msa0355190:CDS | 45.0% | |
| CACCATTGCTAAACTCTGTG+GGG | + | chr3_1:29014258-29014277 | Msa0355190:CDS | 45.0% | |
| TTCCCCACAGAGTTTAGCAA+TGG | - | chr3_1:29014263-29014282 | None:intergenic | 45.0% | |
| GGCGATAGTGATACAAACTG+AGG | - | chr3_1:29014529-29014548 | None:intergenic | 45.0% | |
| TTGAAGAGGGAAGGGAAAGT+TGG | + | chr3_1:29014704-29014723 | Msa0355190:intron | 45.0% | |
| ACAGTGGCAGATGAAAACTG+AGG | - | chr3_1:29015000-29015019 | None:intergenic | 45.0% | |
| TTCATCTGCCACTGTTCCTA+AGG | + | chr3_1:29015005-29015024 | Msa0355190:CDS | 45.0% | |
| GACTTGTACCTTAGGAACAG+TGG | - | chr3_1:29015016-29015035 | None:intergenic | 45.0% | |
| ATGCAAAAGGAGGAGCAACT+TGG | + | chr3_1:29015183-29015202 | Msa0355190:CDS | 45.0% | |
| TGCAAAAGGAGGAGCAACTT+GGG | + | chr3_1:29015184-29015203 | Msa0355190:CDS | 45.0% | |
| ! | ATTGGTGTCCTAGGATGCAT+GGG | + | chr3_1:29015444-29015463 | Msa0355190:CDS | 45.0% |
| ! | GGTAAGGGGCACATAGTATA+TGG | + | chr3_1:29015681-29015700 | Msa0355190:intron | 45.0% |
| CTCACCCACTTGAATCCTTT+AGG | - | chr3_1:29015941-29015960 | None:intergenic | 45.0% | |
| TTCAAGTGGGTGAGATGCAA+AGG | + | chr3_1:29015947-29015966 | Msa0355190:intron | 45.0% | |
| TCAAGTGGGTGAGATGCAAA+GGG | + | chr3_1:29015948-29015967 | Msa0355190:intron | 45.0% | |
| TGGAAAAACACTGCCTTAGG+TGG | + | chr3_1:29016099-29016118 | Msa0355190:intron | 45.0% | |
| AAACACTGCCTTAGGTGGTT+TGG | + | chr3_1:29016104-29016123 | Msa0355190:intron | 45.0% | |
| GCTATACCACTATAACGTGG+TGG | - | chr3_1:29016374-29016393 | None:intergenic | 45.0% | |
| TGCTATTATCCCCTGTGATG+TGG | + | chr3_1:29016405-29016424 | Msa0355190:intron | 45.0% | |
| GCTATTATCCCCTGTGATGT+GGG | + | chr3_1:29016406-29016425 | Msa0355190:intron | 45.0% | |
| AGGAATTACCCACATCACAG+GGG | - | chr3_1:29016417-29016436 | None:intergenic | 45.0% | |
| ATGCCAAATGTCAGATGCCA+TGG | + | chr3_1:29016513-29016532 | Msa0355190:intron | 45.0% | |
| AGTCCATGGCATCTGACATT+TGG | - | chr3_1:29016519-29016538 | None:intergenic | 45.0% | |
| AATGTCAGATGCCATGGACT+CGG | + | chr3_1:29016519-29016538 | Msa0355190:intron | 45.0% | |
| AAGGATTTAGGTAAGCCAGG+TGG | - | chr3_1:29016576-29016595 | None:intergenic | 45.0% | |
| AAAATGGGTGCCTCACTTAC+TGG | + | chr3_1:29016923-29016942 | Msa0355190:CDS | 45.0% | |
| TTCTTTCTAGGCCTTCCTCT+AGG | - | chr3_1:29017085-29017104 | None:intergenic | 45.0% | |
| ! | GCATCTGGTAGTGTCTCAAA+TGG | + | chr3_1:29017223-29017242 | Msa0355190:CDS | 45.0% |
| TGATGTTCATCAGAACTGCC+AGG | - | chr3_1:29017430-29017449 | None:intergenic | 45.0% | |
| TGTATTCGCAGCAGCTTTCT+TGG | - | chr3_1:29017488-29017507 | None:intergenic | 45.0% | |
| GAAAGCTGCTGCGAATACAA+AGG | + | chr3_1:29017489-29017508 | Msa0355190:CDS | 45.0% | |
| GAAAGCTGCTCCGAATACAA+AGG | + | chr3_1:29017525-29017544 | Msa0355190:CDS | 45.0% | |
| GTATGCAGAAGCAGCTTTCT+TGG | - | chr3_1:29017560-29017579 | None:intergenic | 45.0% | |
| GTTGTAGCCCAGATACAAGT+AGG | + | chr3_1:29017635-29017654 | Msa0355190:CDS | 45.0% | |
| GAGGCAAATCATCAACCACA+TGG | + | chr3_1:29017682-29017701 | Msa0355190:CDS | 45.0% | |
| GATGCTTGAGGTTCCAATAC+AGG | - | chr3_1:29017712-29017731 | None:intergenic | 45.0% | |
| ATGGGACAAGTAGATGCTTG+AGG | - | chr3_1:29017724-29017743 | None:intergenic | 45.0% | |
| GTGTCATGCCTAGCTCATAA+TGG | + | chr3_1:29017772-29017791 | Msa0355190:CDS | 45.0% | |
| CCACCTTTCCATTATGAGCT+AGG | - | chr3_1:29017783-29017802 | None:intergenic | 45.0% | |
| ! | CCTAGCTCATAATGGAAAGG+TGG | + | chr3_1:29017780-29017799 | Msa0355190:CDS | 45.0% |
| ! | CTCATAATGGAAAGGTGGCA+TGG | + | chr3_1:29017785-29017804 | Msa0355190:CDS | 45.0% |
| !! | TTCCTCATGCAAGCATCGAA+TGG | + | chr3_1:29017840-29017859 | Msa0355190:CDS | 45.0% |
| !! | TCCTCATGCAAGCATCGAAT+GGG | + | chr3_1:29017841-29017860 | Msa0355190:CDS | 45.0% |
| ! | GGCTATCTTGCTGTCTTGTT+GGG | + | chr3_1:29017862-29017881 | Msa0355190:CDS | 45.0% |
| GCTACAGCGGCAAATGATGA+AGG | + | chr3_1:29014151-29014170 | Msa0355190:CDS | 50.0% | |
| ACAGCGGCAAATGATGAAGG+TGG | + | chr3_1:29014154-29014173 | Msa0355190:CDS | 50.0% | |
| ! | GCAAATGATGAAGGTGGTGG+TGG | + | chr3_1:29014160-29014179 | Msa0355190:CDS | 50.0% |
| GCAAAAGGAGGAGCAACTTG+GGG | + | chr3_1:29015185-29015204 | Msa0355190:CDS | 50.0% | |
| ! | GGGCATTAGATTGGTGTCCT+AGG | + | chr3_1:29015435-29015454 | Msa0355190:CDS | 50.0% |
| ! | GATTGGTGTCCTAGGATGCA+TGG | + | chr3_1:29015443-29015462 | Msa0355190:CDS | 50.0% |
| ! | TTGGTGTCCTAGGATGCATG+GGG | + | chr3_1:29015445-29015464 | Msa0355190:CDS | 50.0% |
| CAAGTGGGTGAGATGCAAAG+GGG | + | chr3_1:29015949-29015968 | Msa0355190:intron | 50.0% | |
| TAGCTATTAGGCCGAGTCCA+TGG | - | chr3_1:29016533-29016552 | None:intergenic | 50.0% | |
| ATCATATCTCCCCGGGAAGA+AGG | + | chr3_1:29017003-29017022 | Msa0355190:CDS | 50.0% | |
| GGGACCAAGTACATAGCATC+TGG | + | chr3_1:29017208-29017227 | Msa0355190:CDS | 50.0% | |
| GAACTGCCAGGAACTACATC+TGG | - | chr3_1:29017418-29017437 | None:intergenic | 50.0% | |
| ACCACATGGTAGCCCTGTAT+TGG | + | chr3_1:29017696-29017715 | Msa0355190:CDS | 50.0% | |
| TCCAATACAGGGCTACCATG+TGG | - | chr3_1:29017700-29017719 | None:intergenic | 50.0% | |
| GCTAGGCATGACACAACTCT+AGG | - | chr3_1:29017766-29017785 | None:intergenic | 50.0% | |
| AGGTGGCATGGGATGTCAAA+TGG | + | chr3_1:29017797-29017816 | Msa0355190:CDS | 50.0% | |
| TGGCATGGGATGTCAAATGG+AGG | + | chr3_1:29017800-29017819 | Msa0355190:CDS | 50.0% | |
| ! | GGGCTATCTTGCTGTCTTGT+TGG | + | chr3_1:29017861-29017880 | Msa0355190:CDS | 50.0% |
| ! | CTTGCTGTCTTGTTGGGCAA+TGG | + | chr3_1:29017868-29017887 | Msa0355190:CDS | 50.0% |
| CTTGTTGGGCAATGGATCTC+TGG | + | chr3_1:29017876-29017895 | Msa0355190:CDS | 50.0% | |
| GCGGCAAATGATGAAGGTGG+TGG | + | chr3_1:29014157-29014176 | Msa0355190:CDS | 55.0% | |
| ! | CTTAGGGTTAGCACCACTGC+TGG | - | chr3_1:29014191-29014210 | None:intergenic | 55.0% |
| ! | CAGCAGTGGTGCTAACCCTA+AGG | + | chr3_1:29014189-29014208 | Msa0355190:CDS | 55.0% |
| !! | GCAGAGGTGCCGTGCAAATA+TGG | + | chr3_1:29016945-29016964 | Msa0355190:CDS | 55.0% |
| GCCCATTCGATGCTTGCATG+AGG | - | chr3_1:29017845-29017864 | None:intergenic | 55.0% | |
| ! | GGTGGTGGTAGTACCAGCAG+TGG | + | chr3_1:29014175-29014194 | Msa0355190:CDS | 60.0% |
| TCAGGCTCCCCATGCATCCT+AGG | - | chr3_1:29015455-29015474 | None:intergenic | 60.0% | |
| GGTGCCTCACTTACTGGCAG+AGG | + | chr3_1:29016929-29016948 | Msa0355190:CDS | 60.0% | |
| GGCACCTCTGCCAGTAAGTG+AGG | - | chr3_1:29016936-29016955 | None:intergenic | 60.0% | |
| GCTGTTGCTGCTCATCCGCC+TGG | + | chr3_1:29016887-29016906 | Msa0355190:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 29013849 | 29017906 | 29013849 | ID=Msa0355190;Name=Msa0355190 |
| chr3_1 | mRNA | 29013849 | 29017906 | 29013849 | ID=Msa0355190-mRNA-1;Parent=Msa0355190;Name=Msa0355190-mRNA-1;_AED=0.35;_eAED=0.35;_QI=179|1|0.8|1|1|1|5|0|542 |
| chr3_1 | exon | 29013849 | 29014350 | 29013849 | ID=Msa0355190-mRNA-1:exon:6075;Parent=Msa0355190-mRNA-1 |
| chr3_1 | exon | 29014891 | 29015026 | 29014891 | ID=Msa0355190-mRNA-1:exon:6076;Parent=Msa0355190-mRNA-1 |
| chr3_1 | exon | 29015177 | 29015229 | 29015177 | ID=Msa0355190-mRNA-1:exon:6077;Parent=Msa0355190-mRNA-1 |
| chr3_1 | exon | 29015403 | 29015493 | 29015403 | ID=Msa0355190-mRNA-1:exon:6078;Parent=Msa0355190-mRNA-1 |
| chr3_1 | exon | 29016881 | 29017906 | 29016881 | ID=Msa0355190-mRNA-1:exon:6079;Parent=Msa0355190-mRNA-1 |
| chr3_1 | five_prime_UTR | 29013849 | 29014027 | 29013849 | ID=Msa0355190-mRNA-1:five_prime_utr;Parent=Msa0355190-mRNA-1 |
| chr3_1 | CDS | 29014028 | 29014350 | 29014028 | ID=Msa0355190-mRNA-1:cds;Parent=Msa0355190-mRNA-1 |
| chr3_1 | CDS | 29014891 | 29015026 | 29014891 | ID=Msa0355190-mRNA-1:cds;Parent=Msa0355190-mRNA-1 |
| chr3_1 | CDS | 29015177 | 29015229 | 29015177 | ID=Msa0355190-mRNA-1:cds;Parent=Msa0355190-mRNA-1 |
| chr3_1 | CDS | 29015403 | 29015493 | 29015403 | ID=Msa0355190-mRNA-1:cds;Parent=Msa0355190-mRNA-1 |
| chr3_1 | CDS | 29016881 | 29017906 | 29016881 | ID=Msa0355190-mRNA-1:cds;Parent=Msa0355190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
