Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0355180 | XP_013468026.1 | 84.502 | 542 | 18 | 3 | 1 | 476 | 1 | 542 | 0.0 | 759 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0355180 | A0A072VKV4 | 84.502 | 542 | 18 | 3 | 1 | 476 | 1 | 542 | 0.0 | 759 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024610 | Msa0355180 | 0.845970 | 2.913278e-59 | -8.615850e-47 |
| Msa0204770 | Msa0355180 | 0.804010 | 2.652588e-49 | -8.615850e-47 |
| Msa0355170 | Msa0355180 | 0.977554 | 5.166886e-144 | -8.615850e-47 |
| Msa0355180 | Msa0355190 | 0.976684 | 2.680263e-142 | -8.615850e-47 |
| Msa0355180 | Msa0402240 | 0.970733 | 4.561608e-132 | -8.615850e-47 |
| Msa0355180 | Msa0402250 | 0.968396 | 1.282967e-128 | -8.615850e-47 |
| Msa0355180 | Msa0708900 | 0.925869 | 1.021556e-90 | -8.615850e-47 |
| Msa0355180 | Msa0708910 | 0.915346 | 6.566584e-85 | -8.615850e-47 |
| Msa0355180 | Msa0806260 | 0.804444 | 2.153827e-49 | -8.615850e-47 |
| Msa0355180 | Msa0806270 | 0.806396 | 8.394152e-50 | -8.615850e-47 |
| Msa0355180 | Msa0806280 | 0.807595 | 4.680695e-50 | -8.615850e-47 |
| Msa0355180 | Msa0829510 | 0.802046 | 6.755045e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0355180 | MtrunA17_Chr1g0178981 | 84.502 | 542 | 18 | 3 | 1 | 476 | 1 | 542 | 0.0 | 759 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0355180 | AT1G19485.1 | 35.597 | 427 | 221 | 11 | 62 | 476 | 8 | 392 | 1.41e-59 | 209 |
| Msa0355180 | AT1G19485.2 | 35.597 | 427 | 221 | 11 | 62 | 476 | 8 | 392 | 1.41e-59 | 209 |
Find 120 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATTGGTTCTCACAATT+TGG | 0.152126 | 3_1:-29005547 | None:intergenic |
| TGGTTCATCTTATCACAAAA+TGG | 0.221693 | 3_1:+29005105 | Msa0355180:CDS |
| AATAATGGCCTACTTGTATC+TGG | 0.238881 | 3_1:-29005841 | None:intergenic |
| TGTATTCGCAGCAGCTTTCT+TGG | 0.251698 | 3_1:-29005683 | None:intergenic |
| ACCTTTCACAAAAGGGATTA+AGG | 0.259506 | 3_1:+29002105 | Msa0355180:five_prime_UTR |
| GTATGCAGAAGCAGCTTTCT+TGG | 0.268262 | 3_1:-29005755 | None:intergenic |
| ACTCTCTTGTTTGCAATTGC+AGG | 0.291928 | 3_1:-29002202 | None:intergenic |
| GCATTCTTTCCCTTTGTATT+CGG | 0.294913 | 3_1:-29005733 | None:intergenic |
| ATTAGGTTTACTTACGGAAT+TGG | 0.296469 | 3_1:+29003123 | Msa0355180:CDS |
| GGGCTATCTTGCTGTCTTGT+TGG | 0.306280 | 3_1:+29006059 | Msa0355180:CDS |
| GGCTATCTTGCTGTCTTGTT+GGG | 0.307911 | 3_1:+29006060 | Msa0355180:CDS |
| AATATCCATCTAAAAGCATT+AGG | 0.316447 | 3_1:+29003106 | Msa0355180:CDS |
| CAGGGTTTGAATATCAGTTC+TGG | 0.319518 | 3_1:+29002163 | Msa0355180:five_prime_UTR |
| AAAATGGGTGCCTCACTTAC+TGG | 0.325896 | 3_1:+29005121 | Msa0355180:CDS |
| ATTTCTCCAGATGTAGTTCC+TGG | 0.344586 | 3_1:+29005607 | Msa0355180:CDS |
| GAACAGTAAGAGGAACAAAT+TGG | 0.352749 | 3_1:-29005561 | None:intergenic |
| GAAATAAATTCAGCTGAATC+TGG | 0.353877 | 3_1:-29005589 | None:intergenic |
| TAAATAGTGTGGCAAAAGTT+AGG | 0.358408 | 3_1:-29002246 | None:intergenic |
| CTTGTTGGGCAATGGATCTC+TGG | 0.375077 | 3_1:+29006074 | Msa0355180:CDS |
| TTCTCACACTGAATCAATAA+TGG | 0.377014 | 3_1:-29005856 | None:intergenic |
| ATACTTGGATTCTTGAGGTT+TGG | 0.380840 | 3_1:-29003409 | None:intergenic |
| GTAGGTTGGATATTAATCAT+AGG | 0.390058 | 3_1:+29005803 | Msa0355180:CDS |
| GGGCATTTACCTTTCACAAA+AGG | 0.395838 | 3_1:+29002097 | Msa0355180:five_prime_UTR |
| GCGTTGTTTATCAACAGAAC+AGG | 0.403768 | 3_1:+29002127 | Msa0355180:five_prime_UTR |
| GGCATTTACCTTTCACAAAA+GGG | 0.424513 | 3_1:+29002098 | Msa0355180:five_prime_UTR |
| TTAGGTTTACTTACGGAATT+GGG | 0.426191 | 3_1:+29003124 | Msa0355180:CDS |
| ATATCAAACAAAGAAACCTT+AGG | 0.426697 | 3_1:-29002403 | None:intergenic |
| GATGCTTGAGGTTCCAATAC+AGG | 0.430718 | 3_1:-29005907 | None:intergenic |
| AGGGTTTGAATATCAGTTCT+GGG | 0.431046 | 3_1:+29002164 | Msa0355180:five_prime_UTR |
| GCTGTTGCTGCTCATCCGCC+TGG | 0.432574 | 3_1:+29005085 | Msa0355180:CDS |
| CTTGCTGTCTTGTTGGGCAA+TGG | 0.437681 | 3_1:+29006066 | Msa0355180:CDS |
| GAACTGCCAGGAACTACATC+TGG | 0.439083 | 3_1:-29005613 | None:intergenic |
| GTTCTGTATGGGCATTAGAT+TGG | 0.440759 | 3_1:+29003624 | Msa0355180:CDS |
| ACCACATGGTAGCCCTGTAT+TGG | 0.442858 | 3_1:+29005894 | Msa0355180:CDS |
| GCATCTGGTAGTGTCTCAAA+TGG | 0.442876 | 3_1:+29005421 | Msa0355180:CDS |
| AGGTGGCATGGGATGTCAAA+TGG | 0.446867 | 3_1:+29005995 | Msa0355180:CDS |
| TCACATTTAATTGAACAATC+AGG | 0.451414 | 3_1:-29003668 | None:intergenic |
| TGCAAAAGGAGGAGCAACTT+GGG | 0.454385 | 3_1:+29003382 | Msa0355180:CDS |
| TCAGGCTCCCCATGCATCCT+AGG | 0.455090 | 3_1:-29003650 | None:intergenic |
| TTCATCTGCCACTGTTCCTA+AGG | 0.455578 | 3_1:+29003203 | Msa0355180:CDS |
| CGAGAATTTCTTTGAAGACA+TGG | 0.460588 | 3_1:+29002432 | Msa0355180:CDS |
| AAAAGCATTAGGTTTACTTA+CGG | 0.463447 | 3_1:+29003117 | Msa0355180:CDS |
| CCACCTTTCCATTATGAGCT+AGG | 0.467563 | 3_1:-29005978 | None:intergenic |
| ATGCAAAAGGAGGAGCAACT+TGG | 0.467583 | 3_1:+29003381 | Msa0355180:CDS |
| TCCTCATGCAAGCATCGAAT+GGG | 0.467596 | 3_1:+29006039 | Msa0355180:CDS |
| GTGTCATGCCTAGCTCATAA+TGG | 0.467799 | 3_1:+29005970 | Msa0355180:CDS |
| GTCCACCTAGGTAAAGTAAA+GGG | 0.472023 | 3_1:+29002077 | Msa0355180:five_prime_UTR |
| GGTTCATCTTATCACAAAAT+GGG | 0.477171 | 3_1:+29005106 | Msa0355180:CDS |
| GGGCATTAGATTGGTGTCCT+AGG | 0.483270 | 3_1:+29003633 | Msa0355180:CDS |
| TCTGGAAGTTGAACAGTAAG+AGG | 0.486423 | 3_1:-29005571 | None:intergenic |
| CTCTTTGATATTAAATAGTG+TGG | 0.488495 | 3_1:-29002257 | None:intergenic |
| CTATCCACTGCTATTACAGT+TGG | 0.488965 | 3_1:-29005373 | None:intergenic |
| TCTTGTTGCAAGAAGTAGGT+TGG | 0.499166 | 3_1:+29005789 | Msa0355180:CDS |
| ATTGATTCAGTGTGAGAATG+AGG | 0.501894 | 3_1:+29005861 | Msa0355180:CDS |
| TGAATGTTGGAGGTTCTGTA+TGG | 0.503920 | 3_1:+29003612 | Msa0355180:CDS |
| TGTCCACCTAGGTAAAGTAA+AGG | 0.506559 | 3_1:+29002076 | Msa0355180:five_prime_UTR |
| CTCATAATGGAAAGGTGGCA+TGG | 0.517043 | 3_1:+29005983 | Msa0355180:CDS |
| TATCAAACAAAGAAACCTTA+GGG | 0.521010 | 3_1:-29002402 | None:intergenic |
| TAGGTTGGATATTAATCATA+GGG | 0.524008 | 3_1:+29005804 | Msa0355180:CDS |
| AAACTCTTGTTGCAAGAAGT+AGG | 0.524383 | 3_1:+29005785 | Msa0355180:CDS |
| CTTAGGGTTAGCACCACTGC+TGG | 0.532612 | 3_1:-29002386 | None:intergenic |
| ATTGGTGTCCTAGGATGCAT+GGG | 0.532952 | 3_1:+29003642 | Msa0355180:CDS |
| TTCCTCATGCAAGCATCGAA+TGG | 0.535078 | 3_1:+29006038 | Msa0355180:CDS |
| GGGACCAAGTACATAGCATC+TGG | 0.536684 | 3_1:+29005406 | Msa0355180:CDS |
| ACTACCAGATGCTATGTACT+TGG | 0.537317 | 3_1:-29005410 | None:intergenic |
| GATTGGTGTCCTAGGATGCA+TGG | 0.541625 | 3_1:+29003641 | Msa0355180:CDS |
| CAGCAGTGGTGCTAACCCTA+AGG | 0.543146 | 3_1:+29002387 | Msa0355180:CDS |
| AAACCATACTTGGATTCTTG+AGG | 0.544459 | 3_1:-29003414 | None:intergenic |
| AGAGACTTTGTGATGAATGT+TGG | 0.551861 | 3_1:+29003599 | Msa0355180:intron |
| AAAGCTGCTGCGAATACAAA+GGG | 0.552131 | 3_1:+29005688 | Msa0355180:CDS |
| AAAGCTGCTCCGAATACAAA+GGG | 0.553544 | 3_1:+29005724 | Msa0355180:CDS |
| ATAATGGCCTACTTGTATCT+GGG | 0.555195 | 3_1:-29005840 | None:intergenic |
| CATCTGGTAGTGTCTCAAAT+GGG | 0.555891 | 3_1:+29005422 | Msa0355180:CDS |
| TTAAATGTGCAGAGAATGGA+AGG | 0.560081 | 3_1:+29003077 | Msa0355180:intron |
| GCTACAGCGGCAAATGATGA+AGG | 0.560213 | 3_1:+29002349 | Msa0355180:CDS |
| ACACCATTGCTAAACTCTGT+GGG | 0.562879 | 3_1:+29002455 | Msa0355180:CDS |
| TTCCCCACAGAGTTTAGCAA+TGG | 0.564444 | 3_1:-29002458 | None:intergenic |
| GTTGTAGCCCAGATACAAGT+AGG | 0.566508 | 3_1:+29005833 | Msa0355180:CDS |
| CGTTGTTTATCAACAGAACA+GGG | 0.567059 | 3_1:+29002128 | Msa0355180:five_prime_UTR |
| GACTTTGTGATGAATGTTGG+AGG | 0.568156 | 3_1:+29003602 | Msa0355180:CDS |
| GAAAGCTGCTCCGAATACAA+AGG | 0.568270 | 3_1:+29005723 | Msa0355180:CDS |
| TGCTGATGATTCTGCTACAG+CGG | 0.574927 | 3_1:+29002336 | Msa0355180:CDS |
| TGCCCTTTACTTTACCTAGG+TGG | 0.580871 | 3_1:-29002079 | None:intergenic |
| TGATGTTCATCAGAACTGCC+AGG | 0.583511 | 3_1:-29005625 | None:intergenic |
| GGTGCCTCACTTACTGGCAG+AGG | 0.584837 | 3_1:+29005127 | Msa0355180:CDS |
| TCATAATGGAAAGGTGGCAT+GGG | 0.586605 | 3_1:+29005984 | Msa0355180:CDS |
| GAATCCAACTGTAATAGCAG+TGG | 0.589763 | 3_1:+29005369 | Msa0355180:CDS |
| GAAAGCTGCTGCGAATACAA+AGG | 0.590265 | 3_1:+29005687 | Msa0355180:CDS |
| CAGTGGATAGTACAAATTGT+GGG | 0.590541 | 3_1:+29005386 | Msa0355180:CDS |
| ATGCTTGAGGTTCCAATACA+GGG | 0.598484 | 3_1:-29005906 | None:intergenic |
| TTATTTGAAATTGTCCACCT+AGG | 0.601577 | 3_1:+29002065 | Msa0355180:five_prime_UTR |
| GCAAATGATGAAGGTGGTGG+TGG | 0.602662 | 3_1:+29002358 | Msa0355180:CDS |
| TCAGCATAATATGCAAAAGG+AGG | 0.605517 | 3_1:+29003371 | Msa0355180:intron |
| AAACAAGAGAGTAATGGAAG+AGG | 0.607256 | 3_1:+29002213 | Msa0355180:exon |
| AAATGCCCTTTACTTTACCT+AGG | 0.608444 | 3_1:-29002082 | None:intergenic |
| GGCACCTCTGCCAGTAAGTG+AGG | 0.611285 | 3_1:-29005131 | None:intergenic |
| GACACCATTGCTAAACTCTG+TGG | 0.614594 | 3_1:+29002454 | Msa0355180:CDS |
| GAGGAATCAAGATTGCTAAG+AGG | 0.614969 | 3_1:-29006021 | None:intergenic |
| AATTGCAAACAAGAGAGTAA+TGG | 0.617423 | 3_1:+29002207 | Msa0355180:exon |
| CCTAGCTCATAATGGAAAGG+TGG | 0.620737 | 3_1:+29005978 | Msa0355180:CDS |
| CAGAACTGATATTCAAACCC+TGG | 0.624538 | 3_1:-29002162 | None:intergenic |
| GCAGTGGATAGTACAAATTG+TGG | 0.626003 | 3_1:+29005385 | Msa0355180:CDS |
| ATGCCTAGCTCATAATGGAA+AGG | 0.628963 | 3_1:+29005975 | Msa0355180:CDS |
| TGATTGTTCAATTAAATGTG+AGG | 0.630368 | 3_1:+29003670 | Msa0355180:CDS |
| GCCCATTCGATGCTTGCATG+AGG | 0.635290 | 3_1:-29006040 | None:intergenic |
| GCTAGGCATGACACAACTCT+AGG | 0.640886 | 3_1:-29005961 | None:intergenic |
| GAATGTTGGAGGTTCTGTAT+GGG | 0.641333 | 3_1:+29003613 | Msa0355180:CDS |
| ATGGGACAAGTAGATGCTTG+AGG | 0.647867 | 3_1:-29005919 | None:intergenic |
| GCAAAAGGAGGAGCAACTTG+GGG | 0.648508 | 3_1:+29003383 | Msa0355180:CDS |
| GCGGCAAATGATGAAGGTGG+TGG | 0.666480 | 3_1:+29002355 | Msa0355180:CDS |
| CACCATTGCTAAACTCTGTG+GGG | 0.668610 | 3_1:+29002456 | Msa0355180:CDS |
| GGTGGTGGTAGTACCAGCAG+TGG | 0.670189 | 3_1:+29002373 | Msa0355180:CDS |
| TGGCATGGGATGTCAAATGG+AGG | 0.678240 | 3_1:+29005998 | Msa0355180:CDS |
| GACTTGTACCTTAGGAACAG+TGG | 0.679559 | 3_1:-29003211 | None:intergenic |
| TCCAATACAGGGCTACCATG+TGG | 0.685481 | 3_1:-29005895 | None:intergenic |
| GAGGCAAATCATCAACCACA+TGG | 0.705993 | 3_1:+29005880 | Msa0355180:CDS |
| TTGGTGTCCTAGGATGCATG+GGG | 0.719461 | 3_1:+29003643 | Msa0355180:CDS |
| TTGTGATAAGATGAACCAGG+CGG | 0.737973 | 3_1:-29005100 | None:intergenic |
| ACAGCGGCAAATGATGAAGG+TGG | 0.745146 | 3_1:+29002352 | Msa0355180:CDS |
| ACAGTGGCAGATGAAAACTG+AGG | 0.800494 | 3_1:-29003195 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATTAGAGTAAAATAT+AGG | - | chr3_1:29003239-29003258 | None:intergenic | 10.0% |
| !!! | TAAGTATATATTTTGCTTTT+AGG | + | chr3_1:29003288-29003307 | Msa0355180:intron | 15.0% |
| !! | TAAAAGGATTTAGATTTAAA+TGG | + | chr3_1:29004374-29004393 | Msa0355180:intron | 15.0% |
| !! | TTTACTACATATATGAATAT+AGG | - | chr3_1:29004959-29004978 | None:intergenic | 15.0% |
| !! | TCTTCAAGTAAATATTTGAT+TGG | - | chr3_1:29002889-29002908 | None:intergenic | 20.0% |
| !! | AATCAAATATTTACTTGAAG+AGG | + | chr3_1:29002888-29002907 | Msa0355180:intron | 20.0% |
| !! | ATCAAATATTTACTTGAAGA+GGG | + | chr3_1:29002889-29002908 | Msa0355180:intron | 20.0% |
| !! | AACCAAAAAAAGAAATTAAG+GGG | - | chr3_1:29003052-29003071 | None:intergenic | 20.0% |
| !! | CAACCAAAAAAAGAAATTAA+GGG | - | chr3_1:29003053-29003072 | None:intergenic | 20.0% |
| !! | TCAACCAAAAAAAGAAATTA+AGG | - | chr3_1:29003054-29003073 | None:intergenic | 20.0% |
| !! | AAATTAGAGTAAAATATAGG+AGG | - | chr3_1:29003236-29003255 | None:intergenic | 20.0% |
| !! | TTTATTCAATGACATTTCTA+TGG | + | chr3_1:29003460-29003479 | Msa0355180:intron | 20.0% |
| !!! | ATATTGTTTTGTTACTTCTT+TGG | + | chr3_1:29003748-29003767 | Msa0355180:intron | 20.0% |
| !!! | TATTGTTTTGTTACTTCTTT+GGG | + | chr3_1:29003749-29003768 | Msa0355180:intron | 20.0% |
| !!! | AGATTTTATTTGAAGTTTGA+TGG | + | chr3_1:29003853-29003872 | Msa0355180:intron | 20.0% |
| !!! | TATTGTTCTTTTAAGAGTTA+AGG | + | chr3_1:29003912-29003931 | Msa0355180:intron | 20.0% |
| !!! | ATTGTTCTTTTAAGAGTTAA+GGG | + | chr3_1:29003913-29003932 | Msa0355180:intron | 20.0% |
| !! | TTCTTAAATTGTGTTGAATT+TGG | - | chr3_1:29004071-29004090 | None:intergenic | 20.0% |
| !!! | TCAACACAATTTAAGAATTT+TGG | + | chr3_1:29004074-29004093 | Msa0355180:intron | 20.0% |
| !!! | TTTCATTGTTATTTGTTTCA+TGG | - | chr3_1:29004102-29004121 | None:intergenic | 20.0% |
| !!! | AGCACATATTTTTGAAAAAA+TGG | + | chr3_1:29004277-29004296 | Msa0355180:intron | 20.0% |
| !!! | TTTTATTCCAAACTGTTAAA+AGG | + | chr3_1:29004358-29004377 | Msa0355180:intron | 20.0% |
| !! | CATAATTAACAAAAGGATTT+AGG | - | chr3_1:29004786-29004805 | None:intergenic | 20.0% |
| !!! | AATCCTTTTGTTAATTATGA+TGG | + | chr3_1:29004787-29004806 | Msa0355180:intron | 20.0% |
| !! | TATCAAAATAGGTATATGTA+TGG | - | chr3_1:29004902-29004921 | None:intergenic | 20.0% |
| !! | TTACATACAAGAGTAAAAAA+AGG | + | chr3_1:29005476-29005495 | Msa0355180:CDS | 20.0% |
| !!! | ACAACAATTTTCTAATACAA+AGG | + | chr3_1:29005651-29005670 | Msa0355180:CDS | 20.0% |
| !!! | CAACAATTTTCTAATACAAA+GGG | + | chr3_1:29005652-29005671 | Msa0355180:CDS | 20.0% |
| ! | CTCTTTGATATTAAATAGTG+TGG | - | chr3_1:29002260-29002279 | None:intergenic | 25.0% |
| ! | TATCAAACAAAGAAACCTTA+GGG | - | chr3_1:29002405-29002424 | None:intergenic | 25.0% |
| ! | ATATCAAACAAAGAAACCTT+AGG | - | chr3_1:29002406-29002425 | None:intergenic | 25.0% |
| ! | ATCATACCTTAAAAAAGTGA+CGG | - | chr3_1:29002536-29002555 | None:intergenic | 25.0% |
| ! | ATAATCATTGAATGACTAAG+TGG | + | chr3_1:29002844-29002863 | Msa0355180:intron | 25.0% |
| !!! | AACCCCTTAATTTCTTTTTT+TGG | + | chr3_1:29003047-29003066 | Msa0355180:intron | 25.0% |
| !!! | AATATCCATCTAAAAGCATT+AGG | + | chr3_1:29003106-29003125 | Msa0355180:CDS | 25.0% |
| !!! | AAAAGCATTAGGTTTACTTA+CGG | + | chr3_1:29003117-29003136 | Msa0355180:CDS | 25.0% |
| !! | TTTTCAGCATAATATGCAAA+AGG | + | chr3_1:29003368-29003387 | Msa0355180:intron | 25.0% |
| ! | AGTTAATATCAAACCATACT+TGG | - | chr3_1:29003427-29003446 | None:intergenic | 25.0% |
| !!! | GATATTAACTTATTTTGTCG+TGG | + | chr3_1:29003437-29003456 | Msa0355180:intron | 25.0% |
| ! | TCACATTTAATTGAACAATC+AGG | - | chr3_1:29003671-29003690 | None:intergenic | 25.0% |
| ! | TGATTGTTCAATTAAATGTG+AGG | + | chr3_1:29003670-29003689 | Msa0355180:CDS | 25.0% |
| !! | TCTAAATCCTTTTAACAGTT+TGG | - | chr3_1:29004368-29004387 | None:intergenic | 25.0% |
| ! | TTTATCACTAGAAATGATCT+AGG | + | chr3_1:29004397-29004416 | Msa0355180:intron | 25.0% |
| ! | CTAAATAGTATACACAATTG+CGG | + | chr3_1:29004534-29004553 | Msa0355180:intron | 25.0% |
| ! | AAAAAAAGTGAACGACAAAA+AGG | - | chr3_1:29004635-29004654 | None:intergenic | 25.0% |
| ! | TCTCCATCATAATTAACAAA+AGG | - | chr3_1:29004793-29004812 | None:intergenic | 25.0% |
| !!! | TACCTATTTTGATAGTTTTG+TGG | + | chr3_1:29004908-29004927 | Msa0355180:intron | 25.0% |
| ! | ACAAATCGATAGAAATAAAG+AGG | + | chr3_1:29005258-29005277 | Msa0355180:intron | 25.0% |
| !!! | CTTTTTCTCTTGTTTGTAAT+AGG | - | chr3_1:29005335-29005354 | None:intergenic | 25.0% |
| ! | ATTACAAACAAGAGAAAAAG+AGG | + | chr3_1:29005335-29005354 | Msa0355180:intron | 25.0% |
| !! | TATTACAGTTGGATTCTTTT+TGG | - | chr3_1:29005365-29005384 | None:intergenic | 25.0% |
| !! | CCATCTTTTGAATTCTTTTT+CGG | - | chr3_1:29005514-29005533 | None:intergenic | 25.0% |
| !! | TAGGTTGGATATTAATCATA+GGG | + | chr3_1:29005804-29005823 | Msa0355180:CDS | 25.0% |
| ! | TTATTTGAAATTGTCCACCT+AGG | + | chr3_1:29002065-29002084 | Msa0355180:five_prime_UTR | 30.0% |
| AATTGCAAACAAGAGAGTAA+TGG | + | chr3_1:29002207-29002226 | Msa0355180:exon | 30.0% | |
| TAAATAGTGTGGCAAAAGTT+AGG | - | chr3_1:29002249-29002268 | None:intergenic | 30.0% | |
| GAAAAAGAAGAAAAAGACGA+AGG | + | chr3_1:29002291-29002310 | Msa0355180:CDS | 30.0% | |
| !!! | TTTCTTCCGTCACTTTTTTA+AGG | + | chr3_1:29002527-29002546 | Msa0355180:CDS | 30.0% |
| GTTAATCTGTTGTGAAGAAA+TGG | + | chr3_1:29002599-29002618 | Msa0355180:intron | 30.0% | |
| TTATAACCAACTCAAAGAGT+TGG | - | chr3_1:29002763-29002782 | None:intergenic | 30.0% | |
| !! | AACTCTTTGAGTTGGTTATA+AGG | + | chr3_1:29002762-29002781 | Msa0355180:intron | 30.0% |
| GATTGGATAGACATAATTGT+AGG | - | chr3_1:29002872-29002891 | None:intergenic | 30.0% | |
| AATATTTACTTGAAGAGGGA+AGG | + | chr3_1:29002893-29002912 | Msa0355180:intron | 30.0% | |
| ATATTTACTTGAAGAGGGAA+GGG | + | chr3_1:29002894-29002913 | Msa0355180:intron | 30.0% | |
| AAAGAAATTAAGGGGTTGTT+TGG | - | chr3_1:29003044-29003063 | None:intergenic | 30.0% | |
| ! | GTAAACCTAATGCTTTTAGA+TGG | - | chr3_1:29003114-29003133 | None:intergenic | 30.0% |
| ATTAGGTTTACTTACGGAAT+TGG | + | chr3_1:29003123-29003142 | Msa0355180:CDS | 30.0% | |
| TTAGGTTTACTTACGGAATT+GGG | + | chr3_1:29003124-29003143 | Msa0355180:CDS | 30.0% | |
| CTCTAATTTAATTGTTTGCC+AGG | + | chr3_1:29003247-29003266 | Msa0355180:intron | 30.0% | |
| ATATACTATAACTTCATGCC+TGG | - | chr3_1:29003268-29003287 | None:intergenic | 30.0% | |
| ! | TCGCTGATTATTGTTTAACT+TGG | + | chr3_1:29003557-29003576 | Msa0355180:intron | 30.0% |
| !! | AGTCAATTCTGTCTTTTTCA+TGG | + | chr3_1:29003802-29003821 | Msa0355180:intron | 30.0% |
| !! | TTATTTGAAGTTTGATGGTG+AGG | + | chr3_1:29003858-29003877 | Msa0355180:intron | 30.0% |
| TAGCAGTAAAACATAGTGTA+CGG | + | chr3_1:29003981-29004000 | Msa0355180:intron | 30.0% | |
| TACGGCATATATTATAAGCA+AGG | + | chr3_1:29003999-29004018 | Msa0355180:intron | 30.0% | |
| ACGGCATATATTATAAGCAA+GGG | + | chr3_1:29004000-29004019 | Msa0355180:intron | 30.0% | |
| ACATAATTGTAGAATAGAGG+TGG | + | chr3_1:29004025-29004044 | Msa0355180:intron | 30.0% | |
| ATTAACCTAAAGGATTCAAG+TGG | + | chr3_1:29004131-29004150 | Msa0355180:intron | 30.0% | |
| TTAACCTAAAGGATTCAAGT+GGG | + | chr3_1:29004132-29004151 | Msa0355180:intron | 30.0% | |
| AATGCGTTAAAGAGAAAGTT+TGG | + | chr3_1:29004252-29004271 | Msa0355180:intron | 30.0% | |
| ATGCGTTAAAGAGAAAGTTT+GGG | + | chr3_1:29004253-29004272 | Msa0355180:intron | 30.0% | |
| AATAGGTATATGTATGGAGT+AGG | - | chr3_1:29004896-29004915 | None:intergenic | 30.0% | |
| GACCACAAAACTATCAAAAT+AGG | - | chr3_1:29004913-29004932 | None:intergenic | 30.0% | |
| TAAACCAAGTATCAGAAAGA+AGG | - | chr3_1:29005058-29005077 | None:intergenic | 30.0% | |
| ! | ATTTTGTGATAAGATGAACC+AGG | - | chr3_1:29005106-29005125 | None:intergenic | 30.0% |
| TGGTTCATCTTATCACAAAA+TGG | + | chr3_1:29005105-29005124 | Msa0355180:CDS | 30.0% | |
| GGTTCATCTTATCACAAAAT+GGG | + | chr3_1:29005106-29005125 | Msa0355180:CDS | 30.0% | |
| TATGGTGTCTTCTAAATATC+AGG | + | chr3_1:29005161-29005180 | Msa0355180:intron | 30.0% | |
| ATGGTGTCTTCTAAATATCA+GGG | + | chr3_1:29005162-29005181 | Msa0355180:intron | 30.0% | |
| ! | TTTTCAGTAGGATTCTTTCT+AGG | - | chr3_1:29005296-29005315 | None:intergenic | 30.0% |
| AAGAGTAAAAAAAGGCCTAA+AGG | + | chr3_1:29005484-29005503 | Msa0355180:CDS | 30.0% | |
| CCGAAAAAGAATTCAAAAGA+TGG | + | chr3_1:29005511-29005530 | Msa0355180:CDS | 30.0% | |
| ! | ACAAATTGGTTCTCACAATT+TGG | - | chr3_1:29005550-29005569 | None:intergenic | 30.0% |
| GAAATAAATTCAGCTGAATC+TGG | - | chr3_1:29005592-29005611 | None:intergenic | 30.0% | |
| ! | GTAGGTTGGATATTAATCAT+AGG | + | chr3_1:29005803-29005822 | Msa0355180:CDS | 30.0% |
| TTCTCACACTGAATCAATAA+TGG | - | chr3_1:29005859-29005878 | None:intergenic | 30.0% | |
| ! | AATGCTACATTTTGTGGAAT+GGG | - | chr3_1:29005940-29005959 | None:intergenic | 30.0% |
| AAATGCCCTTTACTTTACCT+AGG | - | chr3_1:29002085-29002104 | None:intergenic | 35.0% | |
| GGCATTTACCTTTCACAAAA+GGG | + | chr3_1:29002098-29002117 | Msa0355180:five_prime_UTR | 35.0% | |
| ACCTTTCACAAAAGGGATTA+AGG | + | chr3_1:29002105-29002124 | Msa0355180:five_prime_UTR | 35.0% | |
| CGTTGTTTATCAACAGAACA+GGG | + | chr3_1:29002128-29002147 | Msa0355180:five_prime_UTR | 35.0% | |
| AGGGTTTGAATATCAGTTCT+GGG | + | chr3_1:29002164-29002183 | Msa0355180:five_prime_UTR | 35.0% | |
| ! | AAACAAGAGAGTAATGGAAG+AGG | + | chr3_1:29002213-29002232 | Msa0355180:exon | 35.0% |
| ! | CGAGAATTTCTTTGAAGACA+TGG | + | chr3_1:29002432-29002451 | Msa0355180:CDS | 35.0% |
| TGTTCTTGAGCAATACGATT+TGG | + | chr3_1:29002633-29002652 | Msa0355180:intron | 35.0% | |
| ! | AGAGTTGGTTAGGATTGATT+AGG | - | chr3_1:29002748-29002767 | None:intergenic | 35.0% |
| TATGAACCGAATCTCTAAGT+TGG | + | chr3_1:29002961-29002980 | Msa0355180:intron | 35.0% | |
| ATGAACCGAATCTCTAAGTT+GGG | + | chr3_1:29002962-29002981 | Msa0355180:intron | 35.0% | |
| ACCATTAAATGTGCAGAGAA+TGG | + | chr3_1:29003073-29003092 | Msa0355180:intron | 35.0% | |
| TCCATTCTCTGCACATTTAA+TGG | - | chr3_1:29003077-29003096 | None:intergenic | 35.0% | |
| TTAAATGTGCAGAGAATGGA+AGG | + | chr3_1:29003077-29003096 | Msa0355180:intron | 35.0% | |
| TCAGCATAATATGCAAAAGG+AGG | + | chr3_1:29003371-29003390 | Msa0355180:intron | 35.0% | |
| ATACTTGGATTCTTGAGGTT+TGG | - | chr3_1:29003412-29003431 | None:intergenic | 35.0% | |
| AAACCTCAAGAATCCAAGTA+TGG | + | chr3_1:29003411-29003430 | Msa0355180:intron | 35.0% | |
| AAACCATACTTGGATTCTTG+AGG | - | chr3_1:29003417-29003436 | None:intergenic | 35.0% | |
| AACTTGGCTAAACACTTTGT+TGG | + | chr3_1:29003573-29003592 | Msa0355180:intron | 35.0% | |
| AGAGACTTTGTGATGAATGT+TGG | + | chr3_1:29003599-29003618 | Msa0355180:intron | 35.0% | |
| TGTGATGTTTCATACGTTGA+GGG | + | chr3_1:29003830-29003849 | Msa0355180:intron | 35.0% | |
| CTCTTAAAAGAACAATACGC+TGG | - | chr3_1:29003909-29003928 | None:intergenic | 35.0% | |
| CGGCATATATTATAAGCAAG+GGG | + | chr3_1:29004001-29004020 | Msa0355180:intron | 35.0% | |
| GGCACATAATTGTAGAATAG+AGG | + | chr3_1:29004022-29004041 | Msa0355180:intron | 35.0% | |
| GTGTTGAATTTGGTATGCTA+TGG | - | chr3_1:29004061-29004080 | None:intergenic | 35.0% | |
| ACAGAGCGAAATTAACCTAA+AGG | + | chr3_1:29004121-29004140 | Msa0355180:intron | 35.0% | |
| ! | GTAATTTTCGATCACAAAGC+AGG | - | chr3_1:29004179-29004198 | None:intergenic | 35.0% |
| AAATGGAAAAACACTGCCTT+AGG | + | chr3_1:29004294-29004313 | Msa0355180:intron | 35.0% | |
| GATATAGTACTATTGCTGAG+AGG | - | chr3_1:29004481-29004500 | None:intergenic | 35.0% | |
| CTATCAAATAGCGACTATAG+TGG | - | chr3_1:29004505-29004524 | None:intergenic | 35.0% | |
| GACATTTGGCATACAGAAAA+TGG | - | chr3_1:29004703-29004722 | None:intergenic | 35.0% | |
| ! | GTTAATTATGATGGAGACAC+TGG | + | chr3_1:29004796-29004815 | Msa0355180:intron | 35.0% |
| TTATTTCCTACTTCCAAGTC+TGG | - | chr3_1:29005002-29005021 | None:intergenic | 35.0% | |
| ATGACCTTCTTTCTGATACT+TGG | + | chr3_1:29005051-29005070 | Msa0355180:intron | 35.0% | |
| TAGAAGACACCATATTTGCA+CGG | - | chr3_1:29005155-29005174 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTTCCTTCTTCCCG+GGG | - | chr3_1:29005213-29005232 | None:intergenic | 35.0% |
| !!! | GTTTTTTTTTCCTTCTTCCC+GGG | - | chr3_1:29005214-29005233 | None:intergenic | 35.0% |
| !!! | GGTTTTTTTTTCCTTCTTCC+CGG | - | chr3_1:29005215-29005234 | None:intergenic | 35.0% |
| !!! | TTTGTGCACGTGTCTTTTTT+AGG | - | chr3_1:29005236-29005255 | None:intergenic | 35.0% |
| ATAGAAATAAAGAGGCCTAG+AGG | + | chr3_1:29005266-29005285 | Msa0355180:intron | 35.0% | |
| !! | ATTGCTTCGTTGTTTTCAGT+AGG | - | chr3_1:29005308-29005327 | None:intergenic | 35.0% |
| CAGTGGATAGTACAAATTGT+GGG | + | chr3_1:29005386-29005405 | Msa0355180:CDS | 35.0% | |
| !!! | TTCTTTTTCGGTCTTCCTTT+AGG | - | chr3_1:29005502-29005521 | None:intergenic | 35.0% |
| GAACAGTAAGAGGAACAAAT+TGG | - | chr3_1:29005564-29005583 | None:intergenic | 35.0% | |
| GCATTCTTTCCCTTTGTATT+CGG | - | chr3_1:29005664-29005683 | None:intergenic | 35.0% | |
| AAACTCTTGTTGCAAGAAGT+AGG | + | chr3_1:29005785-29005804 | Msa0355180:CDS | 35.0% | |
| ATAATGGCCTACTTGTATCT+GGG | - | chr3_1:29005843-29005862 | None:intergenic | 35.0% | |
| AATAATGGCCTACTTGTATC+TGG | - | chr3_1:29005844-29005863 | None:intergenic | 35.0% | |
| ! | ATTGATTCAGTGTGAGAATG+AGG | + | chr3_1:29005861-29005880 | Msa0355180:CDS | 35.0% |
| ! | CAATGCTACATTTTGTGGAA+TGG | - | chr3_1:29005941-29005960 | None:intergenic | 35.0% |
| TGTCCACCTAGGTAAAGTAA+AGG | + | chr3_1:29002076-29002095 | Msa0355180:five_prime_UTR | 40.0% | |
| GTCCACCTAGGTAAAGTAAA+GGG | + | chr3_1:29002077-29002096 | Msa0355180:five_prime_UTR | 40.0% | |
| GGGCATTTACCTTTCACAAA+AGG | + | chr3_1:29002097-29002116 | Msa0355180:five_prime_UTR | 40.0% | |
| ! | GCCTTAATCCCTTTTGTGAA+AGG | - | chr3_1:29002109-29002128 | None:intergenic | 40.0% |
| GCGTTGTTTATCAACAGAAC+AGG | + | chr3_1:29002127-29002146 | Msa0355180:five_prime_UTR | 40.0% | |
| CAGAACTGATATTCAAACCC+TGG | - | chr3_1:29002165-29002184 | None:intergenic | 40.0% | |
| CAGGGTTTGAATATCAGTTC+TGG | + | chr3_1:29002163-29002182 | Msa0355180:five_prime_UTR | 40.0% | |
| ! | ACTCTCTTGTTTGCAATTGC+AGG | - | chr3_1:29002205-29002224 | None:intergenic | 40.0% |
| ACACCATTGCTAAACTCTGT+GGG | + | chr3_1:29002455-29002474 | Msa0355180:CDS | 40.0% | |
| ATGTATCAGCTATGATGCTC+TGG | + | chr3_1:29002673-29002692 | Msa0355180:intron | 40.0% | |
| TCCTAACCAACTCTTTGAGT+TGG | + | chr3_1:29002754-29002773 | Msa0355180:intron | 40.0% | |
| ! | ACCAACTCAAAGAGTTGGTT+AGG | - | chr3_1:29002758-29002777 | None:intergenic | 40.0% |
| AGGCAGTGCTAATCTATGTA+AGG | + | chr3_1:29002782-29002801 | Msa0355180:intron | 40.0% | |
| CGAAACCCAACTTAGAGATT+CGG | - | chr3_1:29002970-29002989 | None:intergenic | 40.0% | |
| TATAGGAGGACTTGTACCTT+AGG | - | chr3_1:29003222-29003241 | None:intergenic | 40.0% | |
| GACTTTGTGATGAATGTTGG+AGG | + | chr3_1:29003602-29003621 | Msa0355180:CDS | 40.0% | |
| TGAATGTTGGAGGTTCTGTA+TGG | + | chr3_1:29003612-29003631 | Msa0355180:CDS | 40.0% | |
| GAATGTTGGAGGTTCTGTAT+GGG | + | chr3_1:29003613-29003632 | Msa0355180:CDS | 40.0% | |
| GTTCTGTATGGGCATTAGAT+TGG | + | chr3_1:29003624-29003643 | Msa0355180:CDS | 40.0% | |
| GTGTGATGTTTCATACGTTG+AGG | + | chr3_1:29003829-29003848 | Msa0355180:intron | 40.0% | |
| !! | TGAAGTTTGATGGTGAGGTA+AGG | + | chr3_1:29003863-29003882 | Msa0355180:intron | 40.0% |
| !! | GAAGTTTGATGGTGAGGTAA+GGG | + | chr3_1:29003864-29003883 | Msa0355180:intron | 40.0% |
| !! | AAGTTTGATGGTGAGGTAAG+GGG | + | chr3_1:29003865-29003884 | Msa0355180:intron | 40.0% |
| GCTACTTCTACTCACACATT+CGG | - | chr3_1:29003965-29003984 | None:intergenic | 40.0% | |
| ATACATGTCCAAACCACCTA+AGG | - | chr3_1:29004313-29004332 | None:intergenic | 40.0% | |
| ! | TGGTTTGGACATGTATTGAG+AGG | + | chr3_1:29004317-29004336 | Msa0355180:intron | 40.0% |
| GTGTTGTCAATCTCAGATAG+TGG | + | chr3_1:29004443-29004462 | Msa0355180:intron | 40.0% | |
| ! | CACTATAACGTGGTGGAATT+TGG | - | chr3_1:29004565-29004584 | None:intergenic | 40.0% |
| CAAATTCCACCACGTTATAG+TGG | + | chr3_1:29004563-29004582 | Msa0355180:intron | 40.0% | |
| GATGCTATACCACTATAACG+TGG | - | chr3_1:29004575-29004594 | None:intergenic | 40.0% | |
| AAGGAATTACCCACATCACA+GGG | - | chr3_1:29004616-29004635 | None:intergenic | 40.0% | |
| AAAGGAATTACCCACATCAC+AGG | - | chr3_1:29004617-29004636 | None:intergenic | 40.0% | |
| TTGGCATACAGAAAATGGTG+AGG | - | chr3_1:29004698-29004717 | None:intergenic | 40.0% | |
| ! | CATGGTGTCAACTAGCTATT+AGG | - | chr3_1:29004743-29004762 | None:intergenic | 40.0% |
| CACCATGTTAAATTACCACC+TGG | + | chr3_1:29004756-29004775 | Msa0355180:intron | 40.0% | |
| AGCCAGGTGGTAATTTAACA+TGG | - | chr3_1:29004761-29004780 | None:intergenic | 40.0% | |
| CAAAAGGATTTAGGTAAGCC+AGG | - | chr3_1:29004777-29004796 | None:intergenic | 40.0% | |
| ACTTACCTTTGTTCCAGACT+TGG | + | chr3_1:29004986-29005005 | Msa0355180:intron | 40.0% | |
| ! | TACTTCCAAGTCTGGAACAA+AGG | - | chr3_1:29004994-29005013 | None:intergenic | 40.0% |
| TTTGTTCCAGACTTGGAAGT+AGG | + | chr3_1:29004993-29005012 | Msa0355180:intron | 40.0% | |
| TTGTGATAAGATGAACCAGG+CGG | - | chr3_1:29005103-29005122 | None:intergenic | 40.0% | |
| !! | GAAGAAGTATCATATCTCCC+CGG | + | chr3_1:29005193-29005212 | Msa0355180:intron | 40.0% |
| !! | AAGAAGTATCATATCTCCCC+GGG | + | chr3_1:29005194-29005213 | Msa0355180:intron | 40.0% |
| AAATAAAGAGGCCTAGAGGA+AGG | + | chr3_1:29005270-29005289 | Msa0355180:intron | 40.0% | |
| GAATCCAACTGTAATAGCAG+TGG | + | chr3_1:29005369-29005388 | Msa0355180:CDS | 40.0% | |
| CTATCCACTGCTATTACAGT+TGG | - | chr3_1:29005376-29005395 | None:intergenic | 40.0% | |
| GCAGTGGATAGTACAAATTG+TGG | + | chr3_1:29005385-29005404 | Msa0355180:CDS | 40.0% | |
| ACTACCAGATGCTATGTACT+TGG | - | chr3_1:29005413-29005432 | None:intergenic | 40.0% | |
| ! | CATCTGGTAGTGTCTCAAAT+GGG | + | chr3_1:29005422-29005441 | Msa0355180:CDS | 40.0% |
| TCTGGAAGTTGAACAGTAAG+AGG | - | chr3_1:29005574-29005593 | None:intergenic | 40.0% | |
| ATTTCTCCAGATGTAGTTCC+TGG | + | chr3_1:29005607-29005626 | Msa0355180:CDS | 40.0% | |
| AAAGCTGCTGCGAATACAAA+GGG | + | chr3_1:29005688-29005707 | Msa0355180:CDS | 40.0% | |
| AAAGCTGCTCCGAATACAAA+GGG | + | chr3_1:29005724-29005743 | Msa0355180:CDS | 40.0% | |
| TCTTGTTGCAAGAAGTAGGT+TGG | + | chr3_1:29005789-29005808 | Msa0355180:CDS | 40.0% | |
| ATGCTTGAGGTTCCAATACA+GGG | - | chr3_1:29005909-29005928 | None:intergenic | 40.0% | |
| ! | CTAGGCAATGCTACATTTTG+TGG | - | chr3_1:29005946-29005965 | None:intergenic | 40.0% |
| ! | ATGCCTAGCTCATAATGGAA+AGG | + | chr3_1:29005975-29005994 | Msa0355180:CDS | 40.0% |
| ! | TCATAATGGAAAGGTGGCAT+GGG | + | chr3_1:29005984-29006003 | Msa0355180:CDS | 40.0% |
| GAGGAATCAAGATTGCTAAG+AGG | - | chr3_1:29006024-29006043 | None:intergenic | 40.0% | |
| TGCCCTTTACTTTACCTAGG+TGG | - | chr3_1:29002082-29002101 | None:intergenic | 45.0% | |
| !!! | AACAGGGTTTTAGCTTGTCC+AGG | + | chr3_1:29002144-29002163 | Msa0355180:five_prime_UTR | 45.0% |
| !!! | ACAGGGTTTTAGCTTGTCCA+GGG | + | chr3_1:29002145-29002164 | Msa0355180:five_prime_UTR | 45.0% |
| TGCTGATGATTCTGCTACAG+CGG | + | chr3_1:29002336-29002355 | Msa0355180:CDS | 45.0% | |
| GACACCATTGCTAAACTCTG+TGG | + | chr3_1:29002454-29002473 | Msa0355180:CDS | 45.0% | |
| CACCATTGCTAAACTCTGTG+GGG | + | chr3_1:29002456-29002475 | Msa0355180:CDS | 45.0% | |
| TTCCCCACAGAGTTTAGCAA+TGG | - | chr3_1:29002461-29002480 | None:intergenic | 45.0% | |
| GGCGATAGTGATACAAACTG+AGG | - | chr3_1:29002727-29002746 | None:intergenic | 45.0% | |
| TTGAAGAGGGAAGGGAAAGT+TGG | + | chr3_1:29002902-29002921 | Msa0355180:intron | 45.0% | |
| ACAGTGGCAGATGAAAACTG+AGG | - | chr3_1:29003198-29003217 | None:intergenic | 45.0% | |
| TTCATCTGCCACTGTTCCTA+AGG | + | chr3_1:29003203-29003222 | Msa0355180:CDS | 45.0% | |
| GACTTGTACCTTAGGAACAG+TGG | - | chr3_1:29003214-29003233 | None:intergenic | 45.0% | |
| ATGCAAAAGGAGGAGCAACT+TGG | + | chr3_1:29003381-29003400 | Msa0355180:CDS | 45.0% | |
| TGCAAAAGGAGGAGCAACTT+GGG | + | chr3_1:29003382-29003401 | Msa0355180:CDS | 45.0% | |
| ! | ATTGGTGTCCTAGGATGCAT+GGG | + | chr3_1:29003642-29003661 | Msa0355180:CDS | 45.0% |
| ! | GGTAAGGGGCACATAGTATA+TGG | + | chr3_1:29003879-29003898 | Msa0355180:intron | 45.0% |
| CTCACCCACTTGAATCCTTT+AGG | - | chr3_1:29004139-29004158 | None:intergenic | 45.0% | |
| TTCAAGTGGGTGAGATGCAA+AGG | + | chr3_1:29004145-29004164 | Msa0355180:intron | 45.0% | |
| TCAAGTGGGTGAGATGCAAA+GGG | + | chr3_1:29004146-29004165 | Msa0355180:intron | 45.0% | |
| TGGAAAAACACTGCCTTAGG+TGG | + | chr3_1:29004297-29004316 | Msa0355180:intron | 45.0% | |
| AAACACTGCCTTAGGTGGTT+TGG | + | chr3_1:29004302-29004321 | Msa0355180:intron | 45.0% | |
| GCTATACCACTATAACGTGG+TGG | - | chr3_1:29004572-29004591 | None:intergenic | 45.0% | |
| TGCTATTATCCCCTGTGATG+TGG | + | chr3_1:29004603-29004622 | Msa0355180:intron | 45.0% | |
| GCTATTATCCCCTGTGATGT+GGG | + | chr3_1:29004604-29004623 | Msa0355180:intron | 45.0% | |
| AGGAATTACCCACATCACAG+GGG | - | chr3_1:29004615-29004634 | None:intergenic | 45.0% | |
| ATGCCAAATGTCAGATGCCA+TGG | + | chr3_1:29004711-29004730 | Msa0355180:intron | 45.0% | |
| AGTCCATGGCATCTGACATT+TGG | - | chr3_1:29004717-29004736 | None:intergenic | 45.0% | |
| AATGTCAGATGCCATGGACT+CGG | + | chr3_1:29004717-29004736 | Msa0355180:intron | 45.0% | |
| AAGGATTTAGGTAAGCCAGG+TGG | - | chr3_1:29004774-29004793 | None:intergenic | 45.0% | |
| AAAATGGGTGCCTCACTTAC+TGG | + | chr3_1:29005121-29005140 | Msa0355180:CDS | 45.0% | |
| TTCTTTCTAGGCCTTCCTCT+AGG | - | chr3_1:29005284-29005303 | None:intergenic | 45.0% | |
| ! | GCATCTGGTAGTGTCTCAAA+TGG | + | chr3_1:29005421-29005440 | Msa0355180:CDS | 45.0% |
| TGATGTTCATCAGAACTGCC+AGG | - | chr3_1:29005628-29005647 | None:intergenic | 45.0% | |
| TGTATTCGCAGCAGCTTTCT+TGG | - | chr3_1:29005686-29005705 | None:intergenic | 45.0% | |
| GAAAGCTGCTGCGAATACAA+AGG | + | chr3_1:29005687-29005706 | Msa0355180:CDS | 45.0% | |
| GAAAGCTGCTCCGAATACAA+AGG | + | chr3_1:29005723-29005742 | Msa0355180:CDS | 45.0% | |
| GTATGCAGAAGCAGCTTTCT+TGG | - | chr3_1:29005758-29005777 | None:intergenic | 45.0% | |
| GTTGTAGCCCAGATACAAGT+AGG | + | chr3_1:29005833-29005852 | Msa0355180:CDS | 45.0% | |
| GAGGCAAATCATCAACCACA+TGG | + | chr3_1:29005880-29005899 | Msa0355180:CDS | 45.0% | |
| GATGCTTGAGGTTCCAATAC+AGG | - | chr3_1:29005910-29005929 | None:intergenic | 45.0% | |
| ATGGGACAAGTAGATGCTTG+AGG | - | chr3_1:29005922-29005941 | None:intergenic | 45.0% | |
| GTGTCATGCCTAGCTCATAA+TGG | + | chr3_1:29005970-29005989 | Msa0355180:CDS | 45.0% | |
| CCACCTTTCCATTATGAGCT+AGG | - | chr3_1:29005981-29006000 | None:intergenic | 45.0% | |
| ! | CCTAGCTCATAATGGAAAGG+TGG | + | chr3_1:29005978-29005997 | Msa0355180:CDS | 45.0% |
| ! | CTCATAATGGAAAGGTGGCA+TGG | + | chr3_1:29005983-29006002 | Msa0355180:CDS | 45.0% |
| !! | TTCCTCATGCAAGCATCGAA+TGG | + | chr3_1:29006038-29006057 | Msa0355180:CDS | 45.0% |
| !! | TCCTCATGCAAGCATCGAAT+GGG | + | chr3_1:29006039-29006058 | Msa0355180:CDS | 45.0% |
| ! | GGCTATCTTGCTGTCTTGTT+GGG | + | chr3_1:29006060-29006079 | Msa0355180:CDS | 45.0% |
| GCTACAGCGGCAAATGATGA+AGG | + | chr3_1:29002349-29002368 | Msa0355180:CDS | 50.0% | |
| ACAGCGGCAAATGATGAAGG+TGG | + | chr3_1:29002352-29002371 | Msa0355180:CDS | 50.0% | |
| ! | GCAAATGATGAAGGTGGTGG+TGG | + | chr3_1:29002358-29002377 | Msa0355180:CDS | 50.0% |
| GCAAAAGGAGGAGCAACTTG+GGG | + | chr3_1:29003383-29003402 | Msa0355180:CDS | 50.0% | |
| ! | GGGCATTAGATTGGTGTCCT+AGG | + | chr3_1:29003633-29003652 | Msa0355180:CDS | 50.0% |
| ! | GATTGGTGTCCTAGGATGCA+TGG | + | chr3_1:29003641-29003660 | Msa0355180:CDS | 50.0% |
| ! | TTGGTGTCCTAGGATGCATG+GGG | + | chr3_1:29003643-29003662 | Msa0355180:CDS | 50.0% |
| CAAGTGGGTGAGATGCAAAG+GGG | + | chr3_1:29004147-29004166 | Msa0355180:intron | 50.0% | |
| TAGCTATTAGGCCGAGTCCA+TGG | - | chr3_1:29004731-29004750 | None:intergenic | 50.0% | |
| ATCATATCTCCCCGGGAAGA+AGG | + | chr3_1:29005201-29005220 | Msa0355180:intron | 50.0% | |
| GGGACCAAGTACATAGCATC+TGG | + | chr3_1:29005406-29005425 | Msa0355180:CDS | 50.0% | |
| GAACTGCCAGGAACTACATC+TGG | - | chr3_1:29005616-29005635 | None:intergenic | 50.0% | |
| ACCACATGGTAGCCCTGTAT+TGG | + | chr3_1:29005894-29005913 | Msa0355180:CDS | 50.0% | |
| TCCAATACAGGGCTACCATG+TGG | - | chr3_1:29005898-29005917 | None:intergenic | 50.0% | |
| GCTAGGCATGACACAACTCT+AGG | - | chr3_1:29005964-29005983 | None:intergenic | 50.0% | |
| AGGTGGCATGGGATGTCAAA+TGG | + | chr3_1:29005995-29006014 | Msa0355180:CDS | 50.0% | |
| TGGCATGGGATGTCAAATGG+AGG | + | chr3_1:29005998-29006017 | Msa0355180:CDS | 50.0% | |
| ! | GGGCTATCTTGCTGTCTTGT+TGG | + | chr3_1:29006059-29006078 | Msa0355180:CDS | 50.0% |
| ! | CTTGCTGTCTTGTTGGGCAA+TGG | + | chr3_1:29006066-29006085 | Msa0355180:CDS | 50.0% |
| CTTGTTGGGCAATGGATCTC+TGG | + | chr3_1:29006074-29006093 | Msa0355180:CDS | 50.0% | |
| GCGGCAAATGATGAAGGTGG+TGG | + | chr3_1:29002355-29002374 | Msa0355180:CDS | 55.0% | |
| ! | CTTAGGGTTAGCACCACTGC+TGG | - | chr3_1:29002389-29002408 | None:intergenic | 55.0% |
| ! | CAGCAGTGGTGCTAACCCTA+AGG | + | chr3_1:29002387-29002406 | Msa0355180:CDS | 55.0% |
| !! | GCAGAGGTGCCGTGCAAATA+TGG | + | chr3_1:29005143-29005162 | Msa0355180:intron | 55.0% |
| GCCCATTCGATGCTTGCATG+AGG | - | chr3_1:29006043-29006062 | None:intergenic | 55.0% | |
| ! | GGTGGTGGTAGTACCAGCAG+TGG | + | chr3_1:29002373-29002392 | Msa0355180:CDS | 60.0% |
| TCAGGCTCCCCATGCATCCT+AGG | - | chr3_1:29003653-29003672 | None:intergenic | 60.0% | |
| GGTGCCTCACTTACTGGCAG+AGG | + | chr3_1:29005127-29005146 | Msa0355180:CDS | 60.0% | |
| GGCACCTCTGCCAGTAAGTG+AGG | - | chr3_1:29005134-29005153 | None:intergenic | 60.0% | |
| GCTGTTGCTGCTCATCCGCC+TGG | + | chr3_1:29005085-29005104 | Msa0355180:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 29002047 | 29006104 | 29002047 | ID=Msa0355180;Name=Msa0355180 |
| chr3_1 | mRNA | 29002047 | 29006104 | 29002047 | ID=Msa0355180-mRNA-1;Parent=Msa0355180;Name=Msa0355180-mRNA-1;_AED=0.36;_eAED=0.36;_QI=179|0.8|0.66|1|1|1|6|0|476 |
| chr3_1 | exon | 29002047 | 29002548 | 29002047 | ID=Msa0355180-mRNA-1:exon:6080;Parent=Msa0355180-mRNA-1 |
| chr3_1 | exon | 29003089 | 29003224 | 29003089 | ID=Msa0355180-mRNA-1:exon:6081;Parent=Msa0355180-mRNA-1 |
| chr3_1 | exon | 29003375 | 29003427 | 29003375 | ID=Msa0355180-mRNA-1:exon:6082;Parent=Msa0355180-mRNA-1 |
| chr3_1 | exon | 29003601 | 29003691 | 29003601 | ID=Msa0355180-mRNA-1:exon:6083;Parent=Msa0355180-mRNA-1 |
| chr3_1 | exon | 29005079 | 29005148 | 29005079 | ID=Msa0355180-mRNA-1:exon:6084;Parent=Msa0355180-mRNA-1 |
| chr3_1 | exon | 29005347 | 29006104 | 29005347 | ID=Msa0355180-mRNA-1:exon:6085;Parent=Msa0355180-mRNA-1 |
| chr3_1 | five_prime_UTR | 29002047 | 29002225 | 29002047 | ID=Msa0355180-mRNA-1:five_prime_utr;Parent=Msa0355180-mRNA-1 |
| chr3_1 | CDS | 29002226 | 29002548 | 29002226 | ID=Msa0355180-mRNA-1:cds;Parent=Msa0355180-mRNA-1 |
| chr3_1 | CDS | 29003089 | 29003224 | 29003089 | ID=Msa0355180-mRNA-1:cds;Parent=Msa0355180-mRNA-1 |
| chr3_1 | CDS | 29003375 | 29003427 | 29003375 | ID=Msa0355180-mRNA-1:cds;Parent=Msa0355180-mRNA-1 |
| chr3_1 | CDS | 29003601 | 29003691 | 29003601 | ID=Msa0355180-mRNA-1:cds;Parent=Msa0355180-mRNA-1 |
| chr3_1 | CDS | 29005079 | 29005148 | 29005079 | ID=Msa0355180-mRNA-1:cds;Parent=Msa0355180-mRNA-1 |
| chr3_1 | CDS | 29005347 | 29006104 | 29005347 | ID=Msa0355180-mRNA-1:cds;Parent=Msa0355180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
