AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0376700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376700 MtrunA17_Chr3g0127941 93.362 693 12 4 1 668 1 684 0.0 1323
Msa0376700 MtrunA17_Chr7g0276361 38.400 625 322 16 47 656 7 583 2.51e-105 332
Msa0376700 MtrunA17_Chr8g0345901 39.433 388 181 11 41 398 23 386 1.28e-66 230
Msa0376700 MtrunA17_Chr4g0030271 58.015 131 55 0 45 175 80 210 2.32e-48 182
Msa0376700 MtrunA17_Chr4g0030271 76.000 50 12 0 607 656 714 763 8.00e-18 87.8
Msa0376700 MtrunA17_Chr3g0091641 45.038 131 72 0 48 178 18 148 3.93e-30 125
Msa0376700 MtrunA17_Chr3g0091641 68.889 45 14 0 614 658 498 542 1.18e-12 70.9
Msa0376700 MtrunA17_Chr4g0061021 43.704 135 75 1 48 181 27 161 8.56e-30 124
Msa0376700 MtrunA17_Chr4g0061021 73.333 45 12 0 614 658 505 549 4.73e-14 75.5
Msa0376700 MtrunA17_Chr1g0161431 42.276 123 66 2 54 175 15 133 4.84e-24 107
Msa0376700 MtrunA17_Chr3g0123131 41.129 124 68 2 54 176 17 136 1.53e-23 105
Msa0376700 MtrunA17_Chr2g0304841 37.903 124 72 2 54 176 22 141 2.46e-23 105
Msa0376700 MtrunA17_Chr4g0074411 37.903 124 72 2 54 176 22 141 1.16e-22 102
Msa0376700 MtrunA17_Chr3g0137101 37.097 124 73 2 54 176 12 131 3.69e-22 101
Msa0376700 MtrunA17_Chr4g0067981 39.516 124 70 2 54 176 35 154 9.14e-22 100
Msa0376700 MtrunA17_Chr2g0294911 34.545 165 95 3 54 217 33 185 2.02e-21 99.0
Msa0376700 MtrunA17_Chr4g0074401 37.097 124 73 2 54 176 21 140 2.25e-21 98.6
Msa0376700 MtrunA17_Chr1g0149841 36.290 124 74 2 54 176 9 128 5.94e-21 96.7
Msa0376700 MtrunA17_Chr8g0376881 38.710 124 71 2 54 176 29 148 6.66e-21 97.1
Msa0376700 MtrunA17_Chr3g0134481 37.594 133 73 3 54 185 12 135 2.15e-20 89.4
Msa0376700 MtrunA17_Chr1g0149851 36.290 124 74 2 54 176 9 128 9.46e-20 93.2
Msa0376700 MtrunA17_Chr7g0275401 33.871 124 77 2 54 176 9 128 8.70e-18 84.3
Msa0376700 MtrunA17_Chr7g0275891 33.600 125 77 3 54 176 9 129 1.73e-16 81.6
Msa0376700 MtrunA17_Chr7g0256551 29.496 139 80 2 54 174 9 147 1.39e-15 77.0
Msa0376700 MtrunA17_Chr3g0134461 34.677 124 77 2 54 176 12 132 2.04e-14 72.4
Msa0376700 MtrunA17_Chr1g0170741 29.630 135 83 1 54 176 8 142 2.62e-14 72.0
Msa0376700 MtrunA17_Chr4g0059571 30.000 130 82 1 54 174 26 155 5.37e-14 71.6
Msa0376700 MtrunA17_Chr3g0118211 31.034 145 89 3 54 187 23 167 1.08e-13 70.5
Msa0376700 MtrunA17_Chr5g0414931 29.412 136 83 2 54 176 16 151 1.45e-13 70.9
Msa0376700 MtrunA17_Chr1g0181811 28.902 346 176 14 362 656 410 736 2.44e-13 73.6
Msa0376700 MtrunA17_Chr4g0074421 41.558 77 40 2 101 176 3 75 3.30e-13 68.9
Msa0376700 MtrunA17_Chr4g0054981 33.333 132 79 4 42 172 8 131 4.37e-13 72.4
Msa0376700 MtrunA17_Chr3g0082861 29.078 141 82 2 54 176 4 144 2.89e-12 65.5
Msa0376700 MtrunA17_Chr3g0128691 31.746 126 71 3 56 168 20 143 9.79e-12 63.5
Msa0376700 MtrunA17_Chr5g0400241 31.061 132 82 4 42 172 8 131 9.96e-12 68.2
Msa0376700 MtrunA17_Chr3g0136701 49.231 65 32 1 601 664 219 283 1.28e-11 65.9
Msa0376700 MtrunA17_Chr8g0352871 28.261 138 82 2 54 174 9 146 1.81e-11 63.5
Msa0376700 MtrunA17_Chr1g0149831 43.478 69 34 2 109 176 1 65 4.09e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376700 AT5G24470.1 41.304 460 176 13 39 473 35 425 1.19e-90 293
Msa0376700 AT5G24470.1 68.657 67 11 2 596 656 489 551 1.01e-18 90.5
Msa0376700 AT2G46790.3 72.993 137 37 0 42 178 25 161 1.46e-68 231
Msa0376700 AT2G46790.1 72.993 137 37 0 42 178 25 161 2.78e-68 231
Msa0376700 AT2G46790.1 81.250 48 9 0 614 661 417 464 1.32e-17 86.7
Msa0376700 AT5G60100.7 60.448 134 53 0 42 175 52 185 6.06e-52 185
Msa0376700 AT5G60100.6 60.448 134 53 0 42 175 52 185 6.06e-52 185
Msa0376700 AT5G60100.4 60.448 134 53 0 42 175 52 185 6.06e-52 185
Msa0376700 AT5G60100.5 60.448 134 53 0 42 175 52 185 1.79e-51 186
Msa0376700 AT5G60100.5 69.841 63 18 1 605 667 433 494 3.78e-17 85.5
Msa0376700 AT5G60100.3 60.448 134 53 0 42 175 52 185 1.79e-51 186
Msa0376700 AT5G60100.3 69.841 63 18 1 605 667 433 494 3.78e-17 85.5
Msa0376700 AT5G60100.1 60.448 134 53 0 42 175 52 185 1.79e-51 186
Msa0376700 AT5G60100.1 69.841 63 18 1 605 667 433 494 3.78e-17 85.5
Msa0376700 AT5G60100.2 59.155 142 57 1 42 182 52 193 7.56e-51 185
Msa0376700 AT5G60100.2 69.841 63 18 1 605 667 460 521 4.92e-17 85.1
Msa0376700 AT5G02810.1 49.153 177 79 2 10 175 23 199 1.05e-47 179
Msa0376700 AT5G02810.1 83.721 43 7 0 614 656 669 711 8.95e-16 81.6
Msa0376700 AT5G61380.1 42.958 142 78 1 37 178 5 143 1.86e-29 124
Msa0376700 AT5G61380.1 68.889 45 14 0 614 658 533 577 1.39e-12 71.2
Msa0376700 AT2G25180.1 34.434 212 122 4 54 264 17 212 9.24e-25 109
Msa0376700 AT4G31920.1 40.164 122 68 2 54 174 17 134 1.26e-22 102
Msa0376700 AT3G16857.2 38.194 144 78 4 34 176 23 156 1.08e-21 100
Msa0376700 AT3G16857.1 38.194 144 78 4 34 176 23 156 1.23e-21 100
Msa0376700 AT2G01760.1 40.945 127 69 2 54 178 11 133 5.35e-21 95.9
Msa0376700 AT1G67710.1 38.710 124 71 2 54 176 11 130 2.89e-20 95.1
Msa0376700 AT2G46670.1 81.250 48 9 0 614 661 132 179 5.73e-19 85.5
Msa0376700 AT5G58080.1 34.848 132 80 2 44 175 10 135 2.90e-18 89.4
Msa0376700 AT2G46790.5 81.250 48 9 0 614 661 260 307 3.79e-18 86.3
Msa0376700 AT2G46790.4 81.250 48 9 0 614 661 260 307 3.79e-18 86.3
Msa0376700 AT2G46790.2 81.250 48 9 0 614 661 300 347 8.10e-18 85.9
Msa0376700 AT2G46790.2 80.488 41 8 0 135 175 1 41 4.55e-17 83.6
Msa0376700 AT2G01760.2 37.324 142 73 5 48 178 25 161 4.43e-17 84.3
Msa0376700 AT5G02810.2 83.721 43 7 0 614 656 525 567 5.88e-16 82.0
Msa0376700 AT5G02810.2 54.237 59 23 1 117 175 1 55 2.14e-13 73.9
Msa0376700 AT3G16857.3 40.449 89 48 2 89 176 2 86 2.38e-15 80.1
Msa0376700 AT1G19050.1 30.827 133 83 2 54 177 24 156 8.16e-15 74.3
Msa0376700 AT1G10470.3 32.031 128 78 1 56 174 22 149 2.28e-14 73.9
Msa0376700 AT1G59940.1 32.331 133 81 1 56 179 35 167 2.32e-14 73.6
Msa0376700 AT1G10470.1 32.031 128 78 1 56 174 36 163 2.50e-14 73.9
Msa0376700 AT1G59940.2 32.331 133 81 1 56 179 127 259 7.00e-14 73.6
Msa0376700 AT3G48100.1 33.333 129 75 3 50 168 22 149 2.24e-13 69.7
Msa0376700 AT3G57040.2 28.571 140 81 1 54 174 9 148 2.73e-13 70.5
Msa0376700 AT3G57040.1 28.571 140 81 1 54 174 9 148 2.73e-13 70.5
Msa0376700 AT3G62670.1 28.804 184 110 5 46 225 34 200 3.77e-13 72.4
Msa0376700 AT1G74890.1 30.000 130 82 1 54 174 18 147 3.99e-13 69.3
Msa0376700 AT5G62920.1 29.286 140 90 1 38 168 9 148 5.73e-13 68.6
Msa0376700 AT2G41310.1 30.882 136 77 2 56 174 11 146 8.48e-13 68.9
Msa0376700 AT2G01760.3 47.222 72 32 2 109 178 1 68 9.65e-12 67.0
Msa0376700 AT5G49240.1 34.146 123 76 2 54 175 42 160 1.22e-11 66.6
Msa0376700 AT3G56380.1 28.358 134 86 2 54 177 20 153 1.24e-11 63.5
Msa0376700 AT1G49190.2 28.226 124 84 2 56 178 36 155 2.02e-11 67.8
Msa0376700 AT1G49190.1 28.226 124 84 2 56 178 36 155 2.31e-11 66.6

Find 138 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGAATCCCGATTCTCTTTC+TGG 0.070056 3_1:+76932793 Msa0376700:CDS
TCACCCATGTTGTTGTTTAT+TGG 0.145845 3_1:-76929389 None:intergenic
CGCACTTCTCACATTAATTA+TGG 0.184807 3_1:+76930587 Msa0376700:CDS
TACGAACCTCGCGGTCTAAA+TGG 0.244627 3_1:+76932267 Msa0376700:CDS
TCTCTTCCGATTCCTGTAAA+AGG 0.269959 3_1:+76932075 Msa0376700:CDS
GAGCAGCGTCCTCGAGTTAA+AGG 0.270096 3_1:+76932754 Msa0376700:CDS
CAAGAACTTGACATTCATTT+AGG 0.270340 3_1:+76931188 Msa0376700:CDS
TCCAGTAGTATTTGTAATAA+TGG 0.285223 3_1:+76932387 Msa0376700:CDS
GGAATTTGTGGCAGCATGTT+TGG 0.301229 3_1:+76930835 Msa0376700:CDS
GCCGCAACCGCTGGCATAAA+TGG 0.311050 3_1:+76930990 Msa0376700:CDS
TAAAATTACAACTGTATATC+AGG 0.322906 3_1:-76933022 None:intergenic
GCCATTTATGCCAGCGGTTG+CGG 0.331299 3_1:-76930991 None:intergenic
TATACGCTGATTCTTGTCTT+TGG 0.341859 3_1:+76929364 Msa0376700:five_prime_UTR
TGCTGTTGCTGATGGCTTGA+AGG 0.353593 3_1:+76930485 Msa0376700:CDS
TGCTTGCATTCAAAGAAATA+AGG 0.359592 3_1:+76931097 Msa0376700:CDS
AAGGAAGCTATTGACTTGAT+TGG 0.361168 3_1:+76931502 Msa0376700:CDS
ACCAATGCTGGTAAAATTGC+TGG 0.363758 3_1:-76932415 None:intergenic
GTTCCTGTGTATACACAATT+TGG 0.365801 3_1:-76932305 None:intergenic
GTATTGAACTATCTGAGTTA+TGG 0.368410 3_1:-76931999 None:intergenic
GTGTATCACTTTCATCTTGA+GGG 0.373515 3_1:-76931013 None:intergenic
CTTAGAAAATGCAACTATAA+AGG 0.375160 3_1:+76929620 Msa0376700:CDS
TTCGAGGAACACAACTGAAC+CGG 0.382827 3_1:-76932181 None:intergenic
GAGATCCTTCTCAAAGTTGC+TGG 0.389986 3_1:-76931632 None:intergenic
TGTGTATACACAATTTGGTT+TGG 0.392077 3_1:-76932300 None:intergenic
ACAACTGAACCGGGCATTGA+TGG 0.393075 3_1:-76932171 None:intergenic
GATACACTTTGATCAGTTGT+AGG 0.394686 3_1:-76932366 None:intergenic
TCCATTATTACAAATACTAC+TGG 0.397236 3_1:-76932388 None:intergenic
GTTGTTATTAAATATATATC+AGG 0.402264 3_1:-76933000 None:intergenic
CAGAACAGCAGCAGTTTCAG+AGG 0.404213 3_1:+76932488 Msa0376700:CDS
GAGAAGGTGAGGGAAGAAGA+AGG 0.408178 3_1:+76929458 Msa0376700:CDS
CTTAGTTCATTTATTCGAAT+CGG 0.408502 3_1:-76930813 None:intergenic
GAGAGTAGAGGAGGAGGTGG+TGG 0.412031 3_1:+76929491 Msa0376700:CDS
CATAAGGGTGTGCCTTTCTT+CGG 0.412245 3_1:-76931656 None:intergenic
TCAAATTTACTCTACTACTA+AGG 0.413508 3_1:+76931483 Msa0376700:CDS
GAGAAGTGCGTAGCCGGATA+TGG 0.417405 3_1:-76930574 None:intergenic
TGTCCTGCGCGATCACTGCC+TGG 0.417920 3_1:-76931211 None:intergenic
TTAGCAAATATGTGACTTAG+TGG 0.423094 3_1:+76932849 Msa0376700:three_prime_UTR
AGCGTATAGCATCAGAATCT+TGG 0.428632 3_1:-76929349 None:intergenic
CTGAAGCATTGGAATGCATA+AGG 0.429243 3_1:-76931672 None:intergenic
AATGATCTTTGTATGGCCTA+TGG 0.430478 3_1:+76932108 Msa0376700:CDS
GTCGATTTGCCAGCCATATC+CGG 0.434584 3_1:+76930561 Msa0376700:CDS
CGATTCCTGTAAAAGGTGTA+AGG 0.438701 3_1:+76932082 Msa0376700:CDS
CCAGAAAGAGAATCGGGATT+CGG 0.439697 3_1:-76932793 None:intergenic
TTCAATATCATACTTATGAC+AGG 0.442500 3_1:-76930633 None:intergenic
TCTTGTGTCTTTATTTCACT+TGG 0.446311 3_1:-76931170 None:intergenic
GCAGTTGCTGCTGTTGCTGA+TGG 0.454486 3_1:+76930477 Msa0376700:intron
AGAGAGATGTTATGAAAAGA+AGG 0.455803 3_1:+76932599 Msa0376700:CDS
ACTGAGAGTAGAGGAGGAGG+TGG 0.456827 3_1:+76929488 Msa0376700:CDS
CCAGGGTTTCGTACACAATC+AGG 0.457218 3_1:+76932144 Msa0376700:CDS
AATAAGGACTTAATTGAGAA+AGG 0.462433 3_1:+76931113 Msa0376700:CDS
AAGGTTAAATGATCTTTGTA+TGG 0.462879 3_1:+76932101 Msa0376700:CDS
GTGAAATGAAAGGGCTTATG+AGG 0.465706 3_1:+76929513 Msa0376700:CDS
GTTTGACCATTCTCCACAGT+TGG 0.467281 3_1:+76931585 Msa0376700:CDS
TTGCTGATGGCTTGAAGGCA+TGG 0.467739 3_1:+76930490 Msa0376700:CDS
GGAACTGAGAGTAGAGGAGG+AGG 0.470255 3_1:+76929485 Msa0376700:CDS
ATTCATGCAGGTATACAAAC+AGG 0.476773 3_1:+76931902 Msa0376700:intron
AAGCAGTCAGCCGCAACCGC+TGG 0.478137 3_1:+76930981 Msa0376700:intron
TAAATGAACTAAGGAATTTG+TGG 0.487302 3_1:+76930823 Msa0376700:CDS
ATACACTTTGATCAGTTGTA+GGG 0.491753 3_1:-76932365 None:intergenic
GGAGGTGGTGGTGAAATGAA+AGG 0.495607 3_1:+76929503 Msa0376700:CDS
GAGAAGTTAATTACTACTGC+AGG 0.495962 3_1:-76931940 None:intergenic
AGTGGAAGAAGAAGAAGAGA+AGG 0.496753 3_1:+76929442 Msa0376700:CDS
TGCTGATGGCTTGAAGGCAT+GGG 0.496945 3_1:+76930491 Msa0376700:CDS
AATTCATCAATTGATTGCAC+AGG 0.498212 3_1:+76931559 Msa0376700:CDS
CCGTTTGAAAGCTGAAGCAT+TGG 0.498244 3_1:-76931683 None:intergenic
TAATGTGAGAAGTGCGTAGC+CGG 0.502440 3_1:-76930580 None:intergenic
AGAAGGTGAGGGAAGAAGAA+GGG 0.503650 3_1:+76929459 Msa0376700:CDS
GTGAGGGAAGAAGAAGGGAG+TGG 0.503857 3_1:+76929464 Msa0376700:CDS
TGGTGAGAAAATAGTGAGAG+TGG 0.512691 3_1:+76929424 Msa0376700:CDS
CCAATGCTTCAGCTTTCAAA+CGG 0.514454 3_1:+76931683 Msa0376700:CDS
GGAACACAAGTCAGAACATC+CGG 0.514906 3_1:+76932323 Msa0376700:CDS
ATTACTTCCATAACCAATGC+TGG 0.523079 3_1:-76932427 None:intergenic
AATGAAAGGGCTTATGAGGT+GGG 0.528311 3_1:+76929517 Msa0376700:CDS
TGAAGCATTGGAATGCATAA+GGG 0.528347 3_1:-76931671 None:intergenic
TGTGTATCACTTTCATCTTG+AGG 0.529215 3_1:-76931014 None:intergenic
GAGATAAGTCTTTGATCCTC+CGG 0.529482 3_1:-76932342 None:intergenic
AGTGCGTAGCCGGATATGGC+TGG 0.534736 3_1:-76930570 None:intergenic
AGTGGAACTGAGAGTAGAGG+AGG 0.535060 3_1:+76929482 Msa0376700:CDS
AAAGATCCAACTGTGGAGAA+TGG 0.536900 3_1:-76931591 None:intergenic
TGGTGGAAGTGTTGAACCAT+AGG 0.536921 3_1:-76932124 None:intergenic
TTCTGATATTTAAGAAGTCA+AGG 0.543301 3_1:-76932919 None:intergenic
GGGAGTGGAACTGAGAGTAG+AGG 0.544569 3_1:+76929479 Msa0376700:CDS
ATTCACATCGAGCTATGCTA+CGG 0.546537 3_1:+76932541 Msa0376700:CDS
CACAGCATATACAGATCAAG+TGG 0.548302 3_1:-76932942 None:intergenic
AGAAGGATCTCACCGAAGAA+AGG 0.548442 3_1:+76931644 Msa0376700:CDS
AGATCCTTCTCAAAGTTGCT+GGG 0.549454 3_1:-76931631 None:intergenic
AAGAAGAAGAAGAGAAGGTG+AGG 0.553208 3_1:+76929447 Msa0376700:CDS
GAGGTGGTGGTGAAATGAAA+GGG 0.554612 3_1:+76929504 Msa0376700:CDS
AACGCTGCTAGTAATCGTTC+CGG 0.555367 3_1:+76931065 Msa0376700:CDS
TTTAGGAATGCTAGCATCAG+TGG 0.555975 3_1:+76931436 Msa0376700:CDS
AGAAGAAGAAGAGAAGGTGA+GGG 0.557623 3_1:+76929448 Msa0376700:CDS
CGATTCGAATAAATGAACTA+AGG 0.559225 3_1:+76930814 Msa0376700:CDS
AAATGAAAGGGCTTATGAGG+TGG 0.560859 3_1:+76929516 Msa0376700:CDS
TCGAGGAACACAACTGAACC+GGG 0.562948 3_1:-76932180 None:intergenic
ACTTGACATTCATTTAGGCC+AGG 0.566880 3_1:+76931193 Msa0376700:CDS
AGAACAGCAGCAGTTTCAGA+GGG 0.568196 3_1:+76932489 Msa0376700:CDS
CAACTTCACATTCTCAGCAA+GGG 0.576831 3_1:+76932049 Msa0376700:CDS
GCAACTTCACATTCTCAGCA+AGG 0.583947 3_1:+76932048 Msa0376700:CDS
GGATCCAATAAACAACAACA+TGG 0.585441 3_1:+76929385 Msa0376700:exon
TCAGGTCCACCATCAATGCC+CGG 0.589208 3_1:+76932162 Msa0376700:CDS
AGCGCAAATAATTGCAAGGA+CGG 0.590278 3_1:+76931397 Msa0376700:CDS
TCATCCCAGCAACTTTGAGA+AGG 0.593867 3_1:+76931627 Msa0376700:CDS
ACTGAACCGGGCATTGATGG+TGG 0.596008 3_1:-76932168 None:intergenic
ATTGGTTATGGAAGTAATTG+CGG 0.597392 3_1:+76932432 Msa0376700:CDS
TTCACATCGAGCTATGCTAC+GGG 0.598642 3_1:+76932542 Msa0376700:CDS
AAAGAGAATCGGGATTCGGT+TGG 0.599964 3_1:-76932789 None:intergenic
TATGGTTCAACACTTCCACC+AGG 0.607254 3_1:+76932126 Msa0376700:CDS
GACAAGCGCAAATAATTGCA+AGG 0.612224 3_1:+76931393 Msa0376700:CDS
GGAAGTAATTGCGGAAGTAG+CGG 0.613525 3_1:+76932441 Msa0376700:CDS
AATGCAAGCAGCATCACCGC+CGG 0.616301 3_1:-76931084 None:intergenic
ATCGCGCAGGACAGTCACGC+CGG 0.616762 3_1:+76931221 Msa0376700:CDS
ACAAATTGTCCTTTAACTCG+AGG 0.617609 3_1:-76932763 None:intergenic
TTGAGGGCCATTTATGCCAG+CGG 0.618633 3_1:-76930997 None:intergenic
AATAAACAACAACATGGGTG+AGG 0.620435 3_1:+76929391 Msa0376700:exon
TATATCAGGATCTAGAGGAA+AGG 0.621980 3_1:-76932986 None:intergenic
AAATATATATCAGGATCTAG+AGG 0.622685 3_1:-76932991 None:intergenic
CCTGATTGTGTACGAAACCC+TGG 0.626598 3_1:-76932144 None:intergenic
AAGGCATGGGAAATACTCAA+AGG 0.628269 3_1:+76930504 Msa0376700:CDS
TACACTTTGATCAGTTGTAG+GGG 0.630188 3_1:-76932364 None:intergenic
AATGAAGAACTCACAAACAG+TGG 0.636681 3_1:+76932516 Msa0376700:CDS
AAACCAAATTGTGTATACAC+AGG 0.639133 3_1:+76932302 Msa0376700:CDS
GAATGCTAGCATCAGTGGTG+AGG 0.644176 3_1:+76931441 Msa0376700:CDS
GATCCAATAAACAACAACAT+GGG 0.646005 3_1:+76929386 Msa0376700:exon
AGGCCAGGCAGTGATCGCGC+AGG 0.648174 3_1:+76931208 Msa0376700:CDS
GTTTGGAGAAGACAATCAGT+AGG 0.659439 3_1:+76930852 Msa0376700:CDS
GTATACAAATGCATGTTGAG+AGG 0.663604 3_1:+76930768 Msa0376700:CDS
CTGTTTCCATTTAGACCGCG+AGG 0.673170 3_1:-76932273 None:intergenic
ATGGTTCAACACTTCCACCA+GGG 0.675718 3_1:+76932127 Msa0376700:CDS
AAATATGTGACTTAGTGGAG+AGG 0.678737 3_1:+76932854 Msa0376700:three_prime_UTR
GCGCAGGACAGTCACGCCGG+CGG 0.691540 3_1:+76931224 Msa0376700:CDS
GCTGCTAGTAATCGTTCCGG+CGG 0.691660 3_1:+76931068 Msa0376700:CDS
TCAATATCATACTTATGACA+GGG 0.693313 3_1:-76930632 None:intergenic
ATGGGTGAGGTTGTAATGAG+TGG 0.695889 3_1:+76929404 Msa0376700:CDS
CTGAGAGAAAGATCCAACTG+TGG 0.713368 3_1:-76931598 None:intergenic
GAGCAGCTTTACGAACCTCG+CGG 0.732658 3_1:+76932258 Msa0376700:CDS
ACACAAGTCAGAACATCCGG+AGG 0.742561 3_1:+76932326 Msa0376700:CDS
GATTGTGTACGAAACCCTGG+TGG 0.767923 3_1:-76932141 None:intergenic
AGTATCAGATCAATACTGCG+CGG 0.783873 3_1:-76930531 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTACAATTTTTTTTTTTTTT+TGG + chr3_1:76929860-76929879 Msa0376700:intron 10.0%
!! TAATAATTACAAAAATTAAG+GGG + chr3_1:76930087-76930106 Msa0376700:intron 10.0%
!! TAAGAATTTATTAACAAAAT+TGG + chr3_1:76930925-76930944 Msa0376700:intron 10.0%
!! AAGAATTTATTAACAAAATT+GGG + chr3_1:76930926-76930945 Msa0376700:intron 10.0%
!!! ATTATTGAGTTTTATTATCT+TGG + chr3_1:76930368-76930387 Msa0376700:intron 15.0%
!!! TTGAACAAACTTTTATTTTT+AGG + chr3_1:76931310-76931329 Msa0376700:intron 15.0%
!!! ACTTATTTATACTTTTTAAC+AGG + chr3_1:76932702-76932721 Msa0376700:intron 15.0%
!!! GTTGTTATTAAATATATATC+AGG - chr3_1:76933003-76933022 None:intergenic 15.0%
!! GTAAATATTAGGTTATATTG+AGG + chr3_1:76929906-76929925 Msa0376700:intron 20.0%
!! ATTAGAAATTTAGAAGTCTT+TGG + chr3_1:76929999-76930018 Msa0376700:intron 20.0%
!! CGAAAAAATTAGAATAGAAA+GGG - chr3_1:76931721-76931740 None:intergenic 20.0%
!! ACGAAAAAATTAGAATAGAA+AGG - chr3_1:76931722-76931741 None:intergenic 20.0%
!! TAAAATTACAACTGTATATC+AGG - chr3_1:76933025-76933044 None:intergenic 20.0%
! CTTAGAAAATGCAACTATAA+AGG + chr3_1:76929620-76929639 Msa0376700:CDS 25.0%
! AATATTGCTGTGTGTTTAAT+TGG + chr3_1:76929695-76929714 Msa0376700:intron 25.0%
! AATATTGCTGTGTGTTTAAT+TGG + chr3_1:76929695-76929714 Msa0376700:intron 25.0%
! AATTACAAAAATTAAGGGGA+TGG + chr3_1:76930091-76930110 Msa0376700:intron 25.0%
!!! TTTTTTAAAGAGAAGTGACA+TGG + chr3_1:76930215-76930234 Msa0376700:intron 25.0%
! GAATAATTGTACCAAGTTTA+TGG - chr3_1:76930321-76930340 None:intergenic 25.0%
! TAGAACTTAGATTTACTTTC+AGG - chr3_1:76930427-76930446 None:intergenic 25.0%
! TCAATATCATACTTATGACA+GGG - chr3_1:76930635-76930654 None:intergenic 25.0%
! TTCAATATCATACTTATGAC+AGG - chr3_1:76930636-76930655 None:intergenic 25.0%
! CTTAGTTCATTTATTCGAAT+CGG - chr3_1:76930816-76930835 None:intergenic 25.0%
! TAAATGAACTAAGGAATTTG+TGG + chr3_1:76930823-76930842 Msa0376700:CDS 25.0%
! AATAAGGACTTAATTGAGAA+AGG + chr3_1:76931113-76931132 Msa0376700:CDS 25.0%
!!! TTTATTTTTAGGATTAAGCG+TGG + chr3_1:76931321-76931340 Msa0376700:intron 25.0%
! AGCACAAATAACTGTAAAAA+TGG + chr3_1:76931367-76931386 Msa0376700:CDS 25.0%
! TCAAATTTACTCTACTACTA+AGG + chr3_1:76931483-76931502 Msa0376700:CDS 25.0%
! AAGAACTTCAAAACATGATA+CGG + chr3_1:76931785-76931804 Msa0376700:intron 25.0%
! AAGGTTAAATGATCTTTGTA+TGG + chr3_1:76932101-76932120 Msa0376700:CDS 25.0%
! TCCAGTAGTATTTGTAATAA+TGG + chr3_1:76932387-76932406 Msa0376700:CDS 25.0%
! TCCATTATTACAAATACTAC+TGG - chr3_1:76932391-76932410 None:intergenic 25.0%
! TTCTGATATTTAAGAAGTCA+AGG - chr3_1:76932922-76932941 None:intergenic 25.0%
! AAATATATATCAGGATCTAG+AGG - chr3_1:76932994-76933013 None:intergenic 25.0%
GATCCAATAAACAACAACAT+GGG + chr3_1:76929386-76929405 Msa0376700:exon 30.0%
! TTTTGTTAGCTGAGAATCTT+AGG + chr3_1:76930239-76930258 Msa0376700:intron 30.0%
TGCTATAAGACTCTATTTCA+AGG - chr3_1:76930276-76930295 None:intergenic 30.0%
! AATAGAGTCTTATAGCAGTA+TGG + chr3_1:76930279-76930298 Msa0376700:intron 30.0%
ATAGCAGTATGGAAATTACT+AGG + chr3_1:76930290-76930309 Msa0376700:intron 30.0%
CGATTCGAATAAATGAACTA+AGG + chr3_1:76930814-76930833 Msa0376700:CDS 30.0%
TGCTTGCATTCAAAGAAATA+AGG + chr3_1:76931097-76931116 Msa0376700:CDS 30.0%
! TCTTGTGTCTTTATTTCACT+TGG - chr3_1:76931173-76931192 None:intergenic 30.0%
CAAGAACTTGACATTCATTT+AGG + chr3_1:76931188-76931207 Msa0376700:CDS 30.0%
!!! GAATTTTTGAGACTGCAATT+CGG - chr3_1:76931544-76931563 None:intergenic 30.0%
AATTCATCAATTGATTGCAC+AGG + chr3_1:76931559-76931578 Msa0376700:CDS 30.0%
! GTGTATGATTTTTATGCTTG+TGG + chr3_1:76931821-76931840 Msa0376700:intron 30.0%
GTATTGAACTATCTGAGTTA+TGG - chr3_1:76932002-76932021 None:intergenic 30.0%
! TCAGATTCTTTTTGCATACT+TGG - chr3_1:76932024-76932043 None:intergenic 30.0%
! TTTAACCTTACACCTTTTAC+AGG - chr3_1:76932090-76932109 None:intergenic 30.0%
TGTGTATACACAATTTGGTT+TGG - chr3_1:76932303-76932322 None:intergenic 30.0%
AAACCAAATTGTGTATACAC+AGG + chr3_1:76932302-76932321 Msa0376700:CDS 30.0%
ATACACTTTGATCAGTTGTA+GGG - chr3_1:76932368-76932387 None:intergenic 30.0%
!!! AATTTTACCAGCATTGGTTA+TGG + chr3_1:76932420-76932439 Msa0376700:CDS 30.0%
ATTGGTTATGGAAGTAATTG+CGG + chr3_1:76932432-76932451 Msa0376700:CDS 30.0%
! ATCTCTCTTTTCGTTTCAAA+CGG - chr3_1:76932587-76932606 None:intergenic 30.0%
AGAGAGATGTTATGAAAAGA+AGG + chr3_1:76932599-76932618 Msa0376700:CDS 30.0%
! TTTTTCTCCAGAAAGAGAAT+CGG - chr3_1:76932803-76932822 None:intergenic 30.0%
TTAGCAAATATGTGACTTAG+TGG + chr3_1:76932849-76932868 Msa0376700:three_prime_UTR 30.0%
GGAAAGGCAAAAAAGAAAAA+TGG - chr3_1:76932973-76932992 None:intergenic 30.0%
!! TATACGCTGATTCTTGTCTT+TGG + chr3_1:76929364-76929383 Msa0376700:five_prime_UTR 35.0%
GGATCCAATAAACAACAACA+TGG + chr3_1:76929385-76929404 Msa0376700:exon 35.0%
!! TCACCCATGTTGTTGTTTAT+TGG - chr3_1:76929392-76929411 None:intergenic 35.0%
AATAAACAACAACATGGGTG+AGG + chr3_1:76929391-76929410 Msa0376700:exon 35.0%
GGAGAAATTCTTGCCAAAAA+TGG + chr3_1:76929538-76929557 Msa0376700:CDS 35.0%
!! TCTTGCCAAAAATGGTTTTG+AGG + chr3_1:76929546-76929565 Msa0376700:CDS 35.0%
!!! CTTGCCAAAAATGGTTTTGA+GGG + chr3_1:76929547-76929566 Msa0376700:CDS 35.0%
! AGTCTTTGGACTGCAAATTT+TGG + chr3_1:76930013-76930032 Msa0376700:intron 35.0%
!! TTGGACTGCAAATTTTGGAA+AGG + chr3_1:76930018-76930037 Msa0376700:intron 35.0%
!! GCAAATTTTGGAAAGGATCA+AGG + chr3_1:76930025-76930044 Msa0376700:intron 35.0%
ACTAGGTTAAGCCATAAACT+TGG + chr3_1:76930307-76930326 Msa0376700:intron 35.0%
CGCACTTCTCACATTAATTA+TGG + chr3_1:76930587-76930606 Msa0376700:CDS 35.0%
GTATACAAATGCATGTTGAG+AGG + chr3_1:76930768-76930787 Msa0376700:CDS 35.0%
GTGTATCACTTTCATCTTGA+GGG - chr3_1:76931016-76931035 None:intergenic 35.0%
TGTGTATCACTTTCATCTTG+AGG - chr3_1:76931017-76931036 None:intergenic 35.0%
GAAAGAAAGAAATTTACCGC+CGG - chr3_1:76931243-76931262 None:intergenic 35.0%
!! AAGGAAGCTATTGACTTGAT+TGG + chr3_1:76931502-76931521 Msa0376700:CDS 35.0%
!! TGAAGCATTGGAATGCATAA+GGG - chr3_1:76931674-76931693 None:intergenic 35.0%
TGTTTGTATACCTGCATGAA+TGG - chr3_1:76931903-76931922 None:intergenic 35.0%
ATTCATGCAGGTATACAAAC+AGG + chr3_1:76931902-76931921 Msa0376700:intron 35.0%
GAGAAGTTAATTACTACTGC+AGG - chr3_1:76931943-76931962 None:intergenic 35.0%
! CTTACACCTTTTACAGGAAT+CGG - chr3_1:76932084-76932103 None:intergenic 35.0%
AATGATCTTTGTATGGCCTA+TGG + chr3_1:76932108-76932127 Msa0376700:CDS 35.0%
GTTCCTGTGTATACACAATT+TGG - chr3_1:76932308-76932327 None:intergenic 35.0%
TACACTTTGATCAGTTGTAG+GGG - chr3_1:76932367-76932386 None:intergenic 35.0%
GATACACTTTGATCAGTTGT+AGG - chr3_1:76932369-76932388 None:intergenic 35.0%
ATTACTTCCATAACCAATGC+TGG - chr3_1:76932430-76932449 None:intergenic 35.0%
AATGAAGAACTCACAAACAG+TGG + chr3_1:76932516-76932535 Msa0376700:CDS 35.0%
ACAAATTGTCCTTTAACTCG+AGG - chr3_1:76932766-76932785 None:intergenic 35.0%
! TTTTCTCCAGAAAGAGAATC+GGG - chr3_1:76932802-76932821 None:intergenic 35.0%
AAATATGTGACTTAGTGGAG+AGG + chr3_1:76932854-76932873 Msa0376700:three_prime_UTR 35.0%
TATATCAGGATCTAGAGGAA+AGG - chr3_1:76932989-76933008 None:intergenic 35.0%
AGCGTATAGCATCAGAATCT+TGG - chr3_1:76929352-76929371 None:intergenic 40.0%
TGGTGAGAAAATAGTGAGAG+TGG + chr3_1:76929424-76929443 Msa0376700:CDS 40.0%
AGTGGAAGAAGAAGAAGAGA+AGG + chr3_1:76929442-76929461 Msa0376700:CDS 40.0%
AAGAAGAAGAAGAGAAGGTG+AGG + chr3_1:76929447-76929466 Msa0376700:CDS 40.0%
AGAAGAAGAAGAGAAGGTGA+GGG + chr3_1:76929448-76929467 Msa0376700:CDS 40.0%
GTGAAATGAAAGGGCTTATG+AGG + chr3_1:76929513-76929532 Msa0376700:CDS 40.0%
AAATGAAAGGGCTTATGAGG+TGG + chr3_1:76929516-76929535 Msa0376700:CDS 40.0%
AATGAAAGGGCTTATGAGGT+GGG + chr3_1:76929517-76929536 Msa0376700:CDS 40.0%
! AGCACCCTCAAAACCATTTT+TGG - chr3_1:76929554-76929573 None:intergenic 40.0%
!!! AATGGTTTTGAGGGTGCTTT+TGG + chr3_1:76929556-76929575 Msa0376700:CDS 40.0%
AAGGCATGGGAAATACTCAA+AGG + chr3_1:76930504-76930523 Msa0376700:CDS 40.0%
AGTATCAGATCAATACTGCG+CGG - chr3_1:76930534-76930553 None:intergenic 40.0%
GTTTGGAGAAGACAATCAGT+AGG + chr3_1:76930852-76930871 Msa0376700:CDS 40.0%
ACTTGACATTCATTTAGGCC+AGG + chr3_1:76931193-76931212 Msa0376700:CDS 40.0%
!! ATCATTTTGTTCGACTCGCA+AGG + chr3_1:76931271-76931290 Msa0376700:intron 40.0%
GACAAGCGCAAATAATTGCA+AGG + chr3_1:76931393-76931412 Msa0376700:CDS 40.0%
AGCGCAAATAATTGCAAGGA+CGG + chr3_1:76931397-76931416 Msa0376700:CDS 40.0%
!!! GCGATGATCAAGAGCATTTT+AGG + chr3_1:76931419-76931438 Msa0376700:CDS 40.0%
TTTAGGAATGCTAGCATCAG+TGG + chr3_1:76931436-76931455 Msa0376700:CDS 40.0%
AAAGATCCAACTGTGGAGAA+TGG - chr3_1:76931594-76931613 None:intergenic 40.0%
AGATCCTTCTCAAAGTTGCT+GGG - chr3_1:76931634-76931653 None:intergenic 40.0%
!! CTGAAGCATTGGAATGCATA+AGG - chr3_1:76931675-76931694 None:intergenic 40.0%
CCAATGCTTCAGCTTTCAAA+CGG + chr3_1:76931683-76931702 Msa0376700:CDS 40.0%
GCATGCAGAATTCAACAAAG+CGG - chr3_1:76931861-76931880 None:intergenic 40.0%
CTGCATGCTTATCACTGAAA+TGG + chr3_1:76931873-76931892 Msa0376700:intron 40.0%
AAATGGTGTTCCATTCATGC+AGG + chr3_1:76931890-76931909 Msa0376700:intron 40.0%
CAACTTCACATTCTCAGCAA+GGG + chr3_1:76932049-76932068 Msa0376700:CDS 40.0%
TCTCTTCCGATTCCTGTAAA+AGG + chr3_1:76932075-76932094 Msa0376700:CDS 40.0%
! CGATTCCTGTAAAAGGTGTA+AGG + chr3_1:76932082-76932101 Msa0376700:CDS 40.0%
!!! CTGCTTGAAAGTTTTGTTCG+AGG - chr3_1:76932200-76932219 None:intergenic 40.0%
GAGATAAGTCTTTGATCCTC+CGG - chr3_1:76932345-76932364 None:intergenic 40.0%
ACCAATGCTGGTAAAATTGC+TGG - chr3_1:76932418-76932437 None:intergenic 40.0%
ATTCACATCGAGCTATGCTA+CGG + chr3_1:76932541-76932560 Msa0376700:CDS 40.0%
CACAGCATATACAGATCAAG+TGG - chr3_1:76932945-76932964 None:intergenic 40.0%
ATGGGTGAGGTTGTAATGAG+TGG + chr3_1:76929404-76929423 Msa0376700:CDS 45.0%
AGAAGGTGAGGGAAGAAGAA+GGG + chr3_1:76929459-76929478 Msa0376700:CDS 45.0%
! GAGGTGGTGGTGAAATGAAA+GGG + chr3_1:76929504-76929523 Msa0376700:CDS 45.0%
TTGGAAAGGATCAAGGCTCA+AGG + chr3_1:76930032-76930051 Msa0376700:intron 45.0%
TGGAAAGGATCAAGGCTCAA+GGG + chr3_1:76930033-76930052 Msa0376700:intron 45.0%
! TAATGTGAGAAGTGCGTAGC+CGG - chr3_1:76930583-76930602 None:intergenic 45.0%
GGAATTTGTGGCAGCATGTT+TGG + chr3_1:76930835-76930854 Msa0376700:CDS 45.0%
AACGCTGCTAGTAATCGTTC+CGG + chr3_1:76931065-76931084 Msa0376700:CDS 45.0%
AGCGTGGCTAACTGCAAAAA+TGG + chr3_1:76931337-76931356 Msa0376700:CDS 45.0%
GGCTAACTGCAAAAATGGAG+TGG + chr3_1:76931342-76931361 Msa0376700:CDS 45.0%
GTTTGACCATTCTCCACAGT+TGG + chr3_1:76931585-76931604 Msa0376700:CDS 45.0%
CTGAGAGAAAGATCCAACTG+TGG - chr3_1:76931601-76931620 None:intergenic 45.0%
! TCATCCCAGCAACTTTGAGA+AGG + chr3_1:76931627-76931646 Msa0376700:CDS 45.0%
GAGATCCTTCTCAAAGTTGC+TGG - chr3_1:76931635-76931654 None:intergenic 45.0%
AGAAGGATCTCACCGAAGAA+AGG + chr3_1:76931644-76931663 Msa0376700:CDS 45.0%
! CATAAGGGTGTGCCTTTCTT+CGG - chr3_1:76931659-76931678 None:intergenic 45.0%
CCGTTTGAAAGCTGAAGCAT+TGG - chr3_1:76931686-76931705 None:intergenic 45.0%
GCAACTTCACATTCTCAGCA+AGG + chr3_1:76932048-76932067 Msa0376700:CDS 45.0%
!! TGGTGGAAGTGTTGAACCAT+AGG - chr3_1:76932127-76932146 None:intergenic 45.0%
TATGGTTCAACACTTCCACC+AGG + chr3_1:76932126-76932145 Msa0376700:CDS 45.0%
ATGGTTCAACACTTCCACCA+GGG + chr3_1:76932127-76932146 Msa0376700:CDS 45.0%
TTCGAGGAACACAACTGAAC+CGG - chr3_1:76932184-76932203 None:intergenic 45.0%
GGAACACAAGTCAGAACATC+CGG + chr3_1:76932323-76932342 Msa0376700:CDS 45.0%
! GCCAGCAATTTTACCAGCAT+TGG + chr3_1:76932414-76932433 Msa0376700:CDS 45.0%
GGAAGTAATTGCGGAAGTAG+CGG + chr3_1:76932441-76932460 Msa0376700:CDS 45.0%
AGAACAGCAGCAGTTTCAGA+GGG + chr3_1:76932489-76932508 Msa0376700:CDS 45.0%
TTCACATCGAGCTATGCTAC+GGG + chr3_1:76932542-76932561 Msa0376700:CDS 45.0%
! AAAGAGAATCGGGATTCGGT+TGG - chr3_1:76932792-76932811 None:intergenic 45.0%
CCAGAAAGAGAATCGGGATT+CGG - chr3_1:76932796-76932815 None:intergenic 45.0%
!! TTTAATTAATTGTAAATATT+AGG + chr3_1:76929895-76929914 Msa0376700:intron 5.0%
!! TTTAATAATTACAAAAATTA+AGG + chr3_1:76930085-76930104 Msa0376700:intron 5.0%
!! TTAATAATTACAAAAATTAA+GGG + chr3_1:76930086-76930105 Msa0376700:intron 5.0%
!! AATTAATTTAAGTATTAATA+AGG - chr3_1:76930691-76930710 None:intergenic 5.0%
GAGAAGGTGAGGGAAGAAGA+AGG + chr3_1:76929458-76929477 Msa0376700:CDS 50.0%
AGTGGAACTGAGAGTAGAGG+AGG + chr3_1:76929482-76929501 Msa0376700:CDS 50.0%
! GGAGGTGGTGGTGAAATGAA+AGG + chr3_1:76929503-76929522 Msa0376700:CDS 50.0%
TGCTGTTGCTGATGGCTTGA+AGG + chr3_1:76930485-76930504 Msa0376700:CDS 50.0%
TTGCTGATGGCTTGAAGGCA+TGG + chr3_1:76930490-76930509 Msa0376700:CDS 50.0%
! TGCTGATGGCTTGAAGGCAT+GGG + chr3_1:76930491-76930510 Msa0376700:CDS 50.0%
!! GTCGATTTGCCAGCCATATC+CGG + chr3_1:76930561-76930580 Msa0376700:CDS 50.0%
GAATCTTGCGACGACATCAC+TGG - chr3_1:76930738-76930757 None:intergenic 50.0%
TTGAGGGCCATTTATGCCAG+CGG - chr3_1:76931000-76931019 None:intergenic 50.0%
!! AGCAGCGTTGTTTTCAGCAG+TGG - chr3_1:76931054-76931073 None:intergenic 50.0%
GAATGCTAGCATCAGTGGTG+AGG + chr3_1:76931441-76931460 Msa0376700:CDS 50.0%
GATTGTGTACGAAACCCTGG+TGG - chr3_1:76932144-76932163 None:intergenic 50.0%
CCTGATTGTGTACGAAACCC+TGG - chr3_1:76932147-76932166 None:intergenic 50.0%
CCAGGGTTTCGTACACAATC+AGG + chr3_1:76932144-76932163 Msa0376700:CDS 50.0%
!! ACAACTGAACCGGGCATTGA+TGG - chr3_1:76932174-76932193 None:intergenic 50.0%
TCGAGGAACACAACTGAACC+GGG - chr3_1:76932183-76932202 None:intergenic 50.0%
TACGAACCTCGCGGTCTAAA+TGG + chr3_1:76932267-76932286 Msa0376700:CDS 50.0%
CTGTTTCCATTTAGACCGCG+AGG - chr3_1:76932276-76932295 None:intergenic 50.0%
ACACAAGTCAGAACATCCGG+AGG + chr3_1:76932326-76932345 Msa0376700:CDS 50.0%
CAGAACAGCAGCAGTTTCAG+AGG + chr3_1:76932488-76932507 Msa0376700:CDS 50.0%
CCGAATCCCGATTCTCTTTC+TGG + chr3_1:76932793-76932812 Msa0376700:CDS 50.0%
GTGAGGGAAGAAGAAGGGAG+TGG + chr3_1:76929464-76929483 Msa0376700:CDS 55.0%
GGGAGTGGAACTGAGAGTAG+AGG + chr3_1:76929479-76929498 Msa0376700:CDS 55.0%
GGAACTGAGAGTAGAGGAGG+AGG + chr3_1:76929485-76929504 Msa0376700:CDS 55.0%
ACTGAGAGTAGAGGAGGAGG+TGG + chr3_1:76929488-76929507 Msa0376700:CDS 55.0%
GCAGTTGCTGCTGTTGCTGA+TGG + chr3_1:76930477-76930496 Msa0376700:intron 55.0%
! GAGAAGTGCGTAGCCGGATA+TGG - chr3_1:76930577-76930596 None:intergenic 55.0%
GCCATTTATGCCAGCGGTTG+CGG - chr3_1:76930994-76931013 None:intergenic 55.0%
GCTGCTAGTAATCGTTCCGG+CGG + chr3_1:76931068-76931087 Msa0376700:CDS 55.0%
AATGCAAGCAGCATCACCGC+CGG - chr3_1:76931087-76931106 None:intergenic 55.0%
TCAGGTCCACCATCAATGCC+CGG + chr3_1:76932162-76932181 Msa0376700:CDS 55.0%
!! ACTGAACCGGGCATTGATGG+TGG - chr3_1:76932171-76932190 None:intergenic 55.0%
GAGCAGCTTTACGAACCTCG+CGG + chr3_1:76932258-76932277 Msa0376700:CDS 55.0%
GAGCAGCGTCCTCGAGTTAA+AGG + chr3_1:76932754-76932773 Msa0376700:CDS 55.0%
GAGAGTAGAGGAGGAGGTGG+TGG + chr3_1:76929491-76929510 Msa0376700:CDS 60.0%
AGTGCGTAGCCGGATATGGC+TGG - chr3_1:76930573-76930592 None:intergenic 60.0%
GCCGCAACCGCTGGCATAAA+TGG + chr3_1:76930990-76931009 Msa0376700:CDS 60.0%
AAGCAGTCAGCCGCAACCGC+TGG + chr3_1:76930981-76931000 Msa0376700:intron 65.0%
TGTCCTGCGCGATCACTGCC+TGG - chr3_1:76931214-76931233 None:intergenic 65.0%
ATCGCGCAGGACAGTCACGC+CGG + chr3_1:76931221-76931240 Msa0376700:CDS 65.0%
AGGCCAGGCAGTGATCGCGC+AGG + chr3_1:76931208-76931227 Msa0376700:CDS 70.0%
GCGCAGGACAGTCACGCCGG+CGG + chr3_1:76931224-76931243 Msa0376700:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 76929330 76933066 76929330 ID=Msa0376700;Name=Msa0376700
chr3_1 mRNA 76929330 76933066 76929330 ID=Msa0376700-mRNA-1;Parent=Msa0376700;Name=Msa0376700-mRNA-1;_AED=0.06;_eAED=0.07;_QI=74|0.83|0.85|1|1|1|7|235|668
chr3_1 exon 76929330 76929641 76929330 ID=Msa0376700-mRNA-1:exon:18323;Parent=Msa0376700-mRNA-1
chr3_1 exon 76930481 76930642 76930481 ID=Msa0376700-mRNA-1:exon:18324;Parent=Msa0376700-mRNA-1
chr3_1 exon 76930739 76930896 76930739 ID=Msa0376700-mRNA-1:exon:18325;Parent=Msa0376700-mRNA-1
chr3_1 exon 76930987 76931245 76930987 ID=Msa0376700-mRNA-1:exon:18326;Parent=Msa0376700-mRNA-1
chr3_1 exon 76931332 76931704 76931332 ID=Msa0376700-mRNA-1:exon:18327;Parent=Msa0376700-mRNA-1
chr3_1 exon 76931912 76932620 76931912 ID=Msa0376700-mRNA-1:exon:18328;Parent=Msa0376700-mRNA-1
chr3_1 exon 76932724 76933066 76932724 ID=Msa0376700-mRNA-1:exon:18329;Parent=Msa0376700-mRNA-1
chr3_1 five_prime_UTR 76929330 76929403 76929330 ID=Msa0376700-mRNA-1:five_prime_utr;Parent=Msa0376700-mRNA-1
chr3_1 CDS 76929404 76929641 76929404 ID=Msa0376700-mRNA-1:cds;Parent=Msa0376700-mRNA-1
chr3_1 CDS 76930481 76930642 76930481 ID=Msa0376700-mRNA-1:cds;Parent=Msa0376700-mRNA-1
chr3_1 CDS 76930739 76930896 76930739 ID=Msa0376700-mRNA-1:cds;Parent=Msa0376700-mRNA-1
chr3_1 CDS 76930987 76931245 76930987 ID=Msa0376700-mRNA-1:cds;Parent=Msa0376700-mRNA-1
chr3_1 CDS 76931332 76931704 76931332 ID=Msa0376700-mRNA-1:cds;Parent=Msa0376700-mRNA-1
chr3_1 CDS 76931912 76932620 76931912 ID=Msa0376700-mRNA-1:cds;Parent=Msa0376700-mRNA-1
chr3_1 CDS 76932724 76932831 76932724 ID=Msa0376700-mRNA-1:cds;Parent=Msa0376700-mRNA-1
chr3_1 three_prime_UTR 76932832 76933066 76932832 ID=Msa0376700-mRNA-1:three_prime_utr;Parent=Msa0376700-mRNA-1
Gene Sequence

>Msa0376700

ATGGGTGAGGTTGTAATGAGTGGTGAGAAAATAGTGAGAGTGGAAGAAGAAGAAGAGAAGGTGAGGGAAGAAGAAGGGAGTGGAACTGAGAGTAGAGGAGGAGGTGGTGGTGAAATGAAAGGGCTTATGAGGTGGGAGAAATTCTTGCCAAAAATGGTTTTGAGGGTGCTTTTGGTTGAAGCTGATGATTGTACAAGACAGATTATTACAGCACTTCTTAGAAAATGCAACTATAAAGTTGCTGCTGTTGCTGATGGCTTGAAGGCATGGGAAATACTCAAAGGAAGACCGCGCAGTATTGATCTGATACTTACAGAAGTCGATTTGCCAGCCATATCCGGCTACGCACTTCTCACATTAATTATGGAGCATGATATTTGCAAGAGCATCCCTGTCATAATGATGTCGTCGCAAGATTCAGTTAGCACAGTATACAAATGCATGTTGAGAGGTGCAGCTGACTATCTTGTTAAGCCGATTCGAATAAATGAACTAAGGAATTTGTGGCAGCATGTTTGGAGAAGACAATCAGTAGGACTTCTGCTCTCTCAATTTTCATCAGCCGCAACCGCTGGCATAAATGGCCCTCAAGATGAAAGTGATACACAACAGAAGTTTGAAGCCACTGCTGAAAACAACGCTGCTAGTAATCGTTCCGGCGGTGATGCTGCTTGCATTCAAAGAAATAAGGACTTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTGCTGAAGCATATCCAAGTGAAATAAAGACACAAGAACTTGACATTCATTTAGGCCAGGCAGTGATCGCGCAGGACAGTCACGCCGGCGGATTAAGCGTGGCTAACTGCAAAAATGGAGTGGCAAGCACAAATAACTGTAAAAATGGAGAGACAAGCGCAAATAATTGCAAGGACGGCGATGATCAAGAGCATTTTAGGAATGCTAGCATCAGTGGTGAGGTTCATGACAATCACTATGTTCAAATTTACTCTACTACTAAGGAAGCTATTGACTTGATTGGAGCATTTCGTACTGATCCGAATTGCAGTCTCAAAAATTCATCAATTGATTGCACAGGCAAGTTTGACCATTCTCCACAGTTGGATCTTTCTCTCAGAAGCTCTCATCCCAGCAACTTTGAGAAGGATCTCACCGAAGAAAGGCACACCCTTATGCATTCCAATGCTTCAGCTTTCAAACGGTATACAAACAGGCAATTGCAAGCGTCACCTGCAGTAGTAATTAACTTCTCTGATCAACAAAGAGAACAAAAAACAAATAATGAGAACCATAACTCAGATAGTTCAATACCAAGTATGCAAAAAGAATCTGAACTTGCAACTTCACATTCTCAGCAAGGGCATTCTCTTCCGATTCCTGTAAAAGGTGTAAGGTTAAATGATCTTTGTATGGCCTATGGTTCAACACTTCCACCAGGGTTTCGTACACAATCAGGTCCACCATCAATGCCCGGTTCAGTTGTGTTCCTCGAACAAAACTTTCAAGCAGATGCATTTTATCAGTCAAATGTTAAAGAAAATAATTCAGAGCAGCTTTACGAACCTCGCGGTCTAAATGGAAACAGCACTCCAAACCAAATTGTGTATACACAGGAACACAAGTCAGAACATCCGGAGGATCAAAGACTTATCTCCCCTACAACTGATCAAAGTGTATCCAGTAGTATTTGTAATAATGGAAATGCCAGCAATTTTACCAGCATTGGTTATGGAAGTAATTGCGGAAGTAGCGGCAATGTTGAACAAGTTGCAACTTTCAGAACAGCAGCAGTTTCAGAGGGAAAGAATGAAGAACTCACAAACAGTGGATATTCACATCGAGCTATGCTACGGGAAGCAGCTCTAAACAAGTTCCGTTTGAAACGAAAAGAGAGATGTTATGAAAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCTCGAGTTAAAGGACAATTTGTTCGCCAACCGAATCCCGATTCTCTTTCTGGAGAAAAAGATTGCTAA
Protein sequence

>Msa0376700

MGEVVMSGEKIVRVEEEEEKVREEEGSGTESRGGGGGEMKGLMRWEKFLPKMVLRVLLVEADDCTRQIITALLRKCNYKVAAVADGLKAWEILKGRPRSIDLILTEVDLPAISGYALLTLIMEHDICKSIPVIMMSSQDSVSTVYKCMLRGAADYLVKPIRINELRNLWQHVWRRQSVGLLLSQFSSAATAGINGPQDESDTQQKFEATAENNAASNRSGGDAACIQRNKDLIEKGSDAQSSCAEAYPSEIKTQELDIHLGQAVIAQDSHAGGLSVANCKNGVASTNNCKNGETSANNCKDGDDQEHFRNASISGEVHDNHYVQIYSTTKEAIDLIGAFRTDPNCSLKNSSIDCTGKFDHSPQLDLSLRSSHPSNFEKDLTEERHTLMHSNASAFKRYTNRQLQASPAVVINFSDQQREQKTNNENHNSDSSIPSMQKESELATSHSQQGHSLPIPVKGVRLNDLCMAYGSTLPPGFRTQSGPPSMPGSVVFLEQNFQADAFYQSNVKENNSEQLYEPRGLNGNSTPNQIVYTQEHKSEHPEDQRLISPTTDQSVSSSICNNGNASNFTSIGYGSNCGSSGNVEQVATFRTAAVSEGKNEELTNSGYSHRAMLREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQPNPDSLSGEKDC*