AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1411850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1411850 MtrunA17_Chr3g0127941 93.362 693 12 4 1 668 1 684 0.0 1323
Msa1411850 MtrunA17_Chr7g0276361 38.400 625 322 16 47 656 7 583 2.51e-105 332
Msa1411850 MtrunA17_Chr8g0345901 39.433 388 181 11 41 398 23 386 1.28e-66 230
Msa1411850 MtrunA17_Chr4g0030271 58.015 131 55 0 45 175 80 210 2.32e-48 182
Msa1411850 MtrunA17_Chr4g0030271 76.000 50 12 0 607 656 714 763 8.00e-18 87.8
Msa1411850 MtrunA17_Chr3g0091641 45.038 131 72 0 48 178 18 148 3.93e-30 125
Msa1411850 MtrunA17_Chr3g0091641 68.889 45 14 0 614 658 498 542 1.18e-12 70.9
Msa1411850 MtrunA17_Chr4g0061021 43.704 135 75 1 48 181 27 161 8.56e-30 124
Msa1411850 MtrunA17_Chr4g0061021 73.333 45 12 0 614 658 505 549 4.73e-14 75.5
Msa1411850 MtrunA17_Chr1g0161431 42.276 123 66 2 54 175 15 133 4.84e-24 107
Msa1411850 MtrunA17_Chr3g0123131 41.129 124 68 2 54 176 17 136 1.53e-23 105
Msa1411850 MtrunA17_Chr2g0304841 37.903 124 72 2 54 176 22 141 2.46e-23 105
Msa1411850 MtrunA17_Chr4g0074411 37.903 124 72 2 54 176 22 141 1.16e-22 102
Msa1411850 MtrunA17_Chr3g0137101 37.097 124 73 2 54 176 12 131 3.69e-22 101
Msa1411850 MtrunA17_Chr4g0067981 39.516 124 70 2 54 176 35 154 9.14e-22 100
Msa1411850 MtrunA17_Chr2g0294911 34.545 165 95 3 54 217 33 185 2.02e-21 99.0
Msa1411850 MtrunA17_Chr4g0074401 37.097 124 73 2 54 176 21 140 2.25e-21 98.6
Msa1411850 MtrunA17_Chr1g0149841 36.290 124 74 2 54 176 9 128 5.94e-21 96.7
Msa1411850 MtrunA17_Chr8g0376881 38.710 124 71 2 54 176 29 148 6.66e-21 97.1
Msa1411850 MtrunA17_Chr3g0134481 37.594 133 73 3 54 185 12 135 2.15e-20 89.4
Msa1411850 MtrunA17_Chr1g0149851 36.290 124 74 2 54 176 9 128 9.46e-20 93.2
Msa1411850 MtrunA17_Chr7g0275401 33.871 124 77 2 54 176 9 128 8.70e-18 84.3
Msa1411850 MtrunA17_Chr7g0275891 33.600 125 77 3 54 176 9 129 1.73e-16 81.6
Msa1411850 MtrunA17_Chr7g0256551 29.496 139 80 2 54 174 9 147 1.39e-15 77.0
Msa1411850 MtrunA17_Chr3g0134461 34.677 124 77 2 54 176 12 132 2.04e-14 72.4
Msa1411850 MtrunA17_Chr1g0170741 29.630 135 83 1 54 176 8 142 2.62e-14 72.0
Msa1411850 MtrunA17_Chr4g0059571 30.000 130 82 1 54 174 26 155 5.37e-14 71.6
Msa1411850 MtrunA17_Chr3g0118211 31.034 145 89 3 54 187 23 167 1.08e-13 70.5
Msa1411850 MtrunA17_Chr5g0414931 29.412 136 83 2 54 176 16 151 1.45e-13 70.9
Msa1411850 MtrunA17_Chr1g0181811 28.902 346 176 14 362 656 410 736 2.44e-13 73.6
Msa1411850 MtrunA17_Chr4g0074421 41.558 77 40 2 101 176 3 75 3.30e-13 68.9
Msa1411850 MtrunA17_Chr4g0054981 33.333 132 79 4 42 172 8 131 4.37e-13 72.4
Msa1411850 MtrunA17_Chr3g0082861 29.078 141 82 2 54 176 4 144 2.89e-12 65.5
Msa1411850 MtrunA17_Chr3g0128691 31.746 126 71 3 56 168 20 143 9.79e-12 63.5
Msa1411850 MtrunA17_Chr5g0400241 31.061 132 82 4 42 172 8 131 9.96e-12 68.2
Msa1411850 MtrunA17_Chr3g0136701 49.231 65 32 1 601 664 219 283 1.28e-11 65.9
Msa1411850 MtrunA17_Chr8g0352871 28.261 138 82 2 54 174 9 146 1.81e-11 63.5
Msa1411850 MtrunA17_Chr1g0149831 43.478 69 34 2 109 176 1 65 4.09e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1411850 AT5G24470.1 41.304 460 176 13 39 473 35 425 1.19e-90 293
Msa1411850 AT5G24470.1 68.657 67 11 2 596 656 489 551 1.01e-18 90.5
Msa1411850 AT2G46790.3 72.993 137 37 0 42 178 25 161 1.46e-68 231
Msa1411850 AT2G46790.1 72.993 137 37 0 42 178 25 161 2.78e-68 231
Msa1411850 AT2G46790.1 81.250 48 9 0 614 661 417 464 1.32e-17 86.7
Msa1411850 AT5G60100.7 60.448 134 53 0 42 175 52 185 6.06e-52 185
Msa1411850 AT5G60100.6 60.448 134 53 0 42 175 52 185 6.06e-52 185
Msa1411850 AT5G60100.4 60.448 134 53 0 42 175 52 185 6.06e-52 185
Msa1411850 AT5G60100.5 60.448 134 53 0 42 175 52 185 1.79e-51 186
Msa1411850 AT5G60100.5 69.841 63 18 1 605 667 433 494 3.78e-17 85.5
Msa1411850 AT5G60100.3 60.448 134 53 0 42 175 52 185 1.79e-51 186
Msa1411850 AT5G60100.3 69.841 63 18 1 605 667 433 494 3.78e-17 85.5
Msa1411850 AT5G60100.1 60.448 134 53 0 42 175 52 185 1.79e-51 186
Msa1411850 AT5G60100.1 69.841 63 18 1 605 667 433 494 3.78e-17 85.5
Msa1411850 AT5G60100.2 59.155 142 57 1 42 182 52 193 7.56e-51 185
Msa1411850 AT5G60100.2 69.841 63 18 1 605 667 460 521 4.92e-17 85.1
Msa1411850 AT5G02810.1 49.153 177 79 2 10 175 23 199 1.05e-47 179
Msa1411850 AT5G02810.1 83.721 43 7 0 614 656 669 711 8.95e-16 81.6
Msa1411850 AT5G61380.1 42.958 142 78 1 37 178 5 143 1.86e-29 124
Msa1411850 AT5G61380.1 68.889 45 14 0 614 658 533 577 1.39e-12 71.2
Msa1411850 AT2G25180.1 34.434 212 122 4 54 264 17 212 9.24e-25 109
Msa1411850 AT4G31920.1 40.164 122 68 2 54 174 17 134 1.26e-22 102
Msa1411850 AT3G16857.2 38.194 144 78 4 34 176 23 156 1.08e-21 100
Msa1411850 AT3G16857.1 38.194 144 78 4 34 176 23 156 1.23e-21 100
Msa1411850 AT2G01760.1 40.945 127 69 2 54 178 11 133 5.35e-21 95.9
Msa1411850 AT1G67710.1 38.710 124 71 2 54 176 11 130 2.89e-20 95.1
Msa1411850 AT2G46670.1 81.250 48 9 0 614 661 132 179 5.73e-19 85.5
Msa1411850 AT5G58080.1 34.848 132 80 2 44 175 10 135 2.90e-18 89.4
Msa1411850 AT2G46790.5 81.250 48 9 0 614 661 260 307 3.79e-18 86.3
Msa1411850 AT2G46790.4 81.250 48 9 0 614 661 260 307 3.79e-18 86.3
Msa1411850 AT2G46790.2 81.250 48 9 0 614 661 300 347 8.10e-18 85.9
Msa1411850 AT2G46790.2 80.488 41 8 0 135 175 1 41 4.55e-17 83.6
Msa1411850 AT2G01760.2 37.324 142 73 5 48 178 25 161 4.43e-17 84.3
Msa1411850 AT5G02810.2 83.721 43 7 0 614 656 525 567 5.88e-16 82.0
Msa1411850 AT5G02810.2 54.237 59 23 1 117 175 1 55 2.14e-13 73.9
Msa1411850 AT3G16857.3 40.449 89 48 2 89 176 2 86 2.38e-15 80.1
Msa1411850 AT1G19050.1 30.827 133 83 2 54 177 24 156 8.16e-15 74.3
Msa1411850 AT1G10470.3 32.031 128 78 1 56 174 22 149 2.28e-14 73.9
Msa1411850 AT1G59940.1 32.331 133 81 1 56 179 35 167 2.32e-14 73.6
Msa1411850 AT1G10470.1 32.031 128 78 1 56 174 36 163 2.50e-14 73.9
Msa1411850 AT1G59940.2 32.331 133 81 1 56 179 127 259 7.00e-14 73.6
Msa1411850 AT3G48100.1 33.333 129 75 3 50 168 22 149 2.24e-13 69.7
Msa1411850 AT3G57040.2 28.571 140 81 1 54 174 9 148 2.73e-13 70.5
Msa1411850 AT3G57040.1 28.571 140 81 1 54 174 9 148 2.73e-13 70.5
Msa1411850 AT3G62670.1 28.804 184 110 5 46 225 34 200 3.77e-13 72.4
Msa1411850 AT1G74890.1 30.000 130 82 1 54 174 18 147 3.99e-13 69.3
Msa1411850 AT5G62920.1 29.286 140 90 1 38 168 9 148 5.73e-13 68.6
Msa1411850 AT2G41310.1 30.882 136 77 2 56 174 11 146 8.48e-13 68.9
Msa1411850 AT2G01760.3 47.222 72 32 2 109 178 1 68 9.65e-12 67.0
Msa1411850 AT5G49240.1 34.146 123 76 2 54 175 42 160 1.22e-11 66.6
Msa1411850 AT3G56380.1 28.358 134 86 2 54 177 20 153 1.24e-11 63.5
Msa1411850 AT1G49190.2 28.226 124 84 2 56 178 36 155 2.02e-11 67.8
Msa1411850 AT1G49190.1 28.226 124 84 2 56 178 36 155 2.31e-11 66.6

Find 138 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGAATCCCGATTCTCTTTC+TGG 0.070056 tig0023844:+40704 Msa1411850:CDS
TCACCCATGTTGTTGTTTAT+TGG 0.145845 tig0023844:-37300 None:intergenic
CGCACTTCTCACATTAATTA+TGG 0.184807 tig0023844:+38498 Msa1411850:CDS
TACGAACCTCGCGGTCTAAA+TGG 0.244627 tig0023844:+40178 Msa1411850:CDS
TCTCTTCCGATTCCTGTAAA+AGG 0.269959 tig0023844:+39986 Msa1411850:CDS
GAGCAGCGTCCTCGAGTTAA+AGG 0.270096 tig0023844:+40665 Msa1411850:CDS
CAAGAACTTGACATTCATTT+AGG 0.270340 tig0023844:+39099 Msa1411850:CDS
TCCAGTAGTATTTGTAATAA+TGG 0.285223 tig0023844:+40298 Msa1411850:CDS
GGAATTTGTGGCAGCATGTT+TGG 0.301229 tig0023844:+38746 Msa1411850:CDS
GCCGCAACCGCTGGCATAAA+TGG 0.311050 tig0023844:+38901 Msa1411850:CDS
GCCATTTATGCCAGCGGTTG+CGG 0.331299 tig0023844:-38902 None:intergenic
TATACGCTGATTCTTGTCTT+TGG 0.341859 tig0023844:+37275 Msa1411850:five_prime_UTR
TGCTGTTGCTGATGGCTTGA+AGG 0.353593 tig0023844:+38396 Msa1411850:CDS
TGCTTGCATTCAAAGAAATA+AGG 0.359592 tig0023844:+39008 Msa1411850:CDS
AAGGAAGCTATTGACTTGAT+TGG 0.361168 tig0023844:+39413 Msa1411850:CDS
TAAAACTACAACTGTATATC+AGG 0.361394 tig0023844:-40933 None:intergenic
ACCAATGCTGGTAAAATTGC+TGG 0.363758 tig0023844:-40326 None:intergenic
GTTCCTGTGTATACACAATT+TGG 0.365801 tig0023844:-40216 None:intergenic
GTATTGAACTATCTGAGTTA+TGG 0.368410 tig0023844:-39910 None:intergenic
GTGTATCACTTTCATCTTGA+GGG 0.373515 tig0023844:-38924 None:intergenic
CTTAGAAAATGCAACTATAA+AGG 0.375160 tig0023844:+37531 Msa1411850:CDS
TTCGAGGAACACAACTGAAC+CGG 0.382827 tig0023844:-40092 None:intergenic
GAGATCCTTCTCAAAGTTGC+TGG 0.389986 tig0023844:-39543 None:intergenic
TGTGTATACACAATTTGGTT+TGG 0.392077 tig0023844:-40211 None:intergenic
ACAACTGAACCGGGCATTGA+TGG 0.393075 tig0023844:-40082 None:intergenic
GATACACTTTGATCAGTTGT+AGG 0.394686 tig0023844:-40277 None:intergenic
TCCATTATTACAAATACTAC+TGG 0.397236 tig0023844:-40299 None:intergenic
GTTGTTATTAAATATATATC+AGG 0.402264 tig0023844:-40911 None:intergenic
CAGAACAGCAGCAGTTTCAG+AGG 0.404213 tig0023844:+40399 Msa1411850:CDS
GAGAAGGTGAGGGAAGAAGA+AGG 0.408178 tig0023844:+37369 Msa1411850:CDS
CTTAGTTCATTTATTCGAAT+CGG 0.408502 tig0023844:-38724 None:intergenic
GAGAGTAGAGGAGGAGGTGG+TGG 0.412031 tig0023844:+37402 Msa1411850:CDS
CATAAGGGTGTGCCTTTCTT+CGG 0.412245 tig0023844:-39567 None:intergenic
TCAAATTTACTCTACTACTA+AGG 0.413508 tig0023844:+39394 Msa1411850:CDS
GAGAAGTGCGTAGCCGGATA+TGG 0.417405 tig0023844:-38485 None:intergenic
TGTCCTGCGCGATCACTGCC+TGG 0.417920 tig0023844:-39122 None:intergenic
TTAGCAAATATGTGACTTAG+TGG 0.423094 tig0023844:+40760 Msa1411850:three_prime_UTR
AGCGTATAGCATCAGAATCT+TGG 0.428632 tig0023844:-37260 None:intergenic
CTGAAGCATTGGAATGCATA+AGG 0.429243 tig0023844:-39583 None:intergenic
AATGATCTTTGTATGGCCTA+TGG 0.430478 tig0023844:+40019 Msa1411850:CDS
GTCGATTTGCCAGCCATATC+CGG 0.434584 tig0023844:+38472 Msa1411850:CDS
CGATTCCTGTAAAAGGTGTA+AGG 0.438701 tig0023844:+39993 Msa1411850:CDS
CCAGAAAGAGAATCGGGATT+CGG 0.439697 tig0023844:-40704 None:intergenic
TTCAATATCATACTTATGAC+AGG 0.442500 tig0023844:-38544 None:intergenic
TCTTGTGTCTTTATTTCACT+TGG 0.446311 tig0023844:-39081 None:intergenic
GCAGTTGCTGCTGTTGCTGA+TGG 0.454486 tig0023844:+38388 Msa1411850:intron
AGAGAGATGTTATGAAAAGA+AGG 0.455803 tig0023844:+40510 Msa1411850:CDS
ACTGAGAGTAGAGGAGGAGG+TGG 0.456827 tig0023844:+37399 Msa1411850:CDS
CCAGGGTTTCGTACACAATC+AGG 0.457218 tig0023844:+40055 Msa1411850:CDS
AATAAGGACTTAATTGAGAA+AGG 0.462433 tig0023844:+39024 Msa1411850:CDS
AAGGTTAAATGATCTTTGTA+TGG 0.462879 tig0023844:+40012 Msa1411850:CDS
GTGAAATGAAAGGGCTTATG+AGG 0.465706 tig0023844:+37424 Msa1411850:CDS
GTTTGACCATTCTCCACAGT+TGG 0.467281 tig0023844:+39496 Msa1411850:CDS
TTGCTGATGGCTTGAAGGCA+TGG 0.467739 tig0023844:+38401 Msa1411850:CDS
GGAACTGAGAGTAGAGGAGG+AGG 0.470255 tig0023844:+37396 Msa1411850:CDS
ATTCATGCAGGTATACAAAC+AGG 0.476773 tig0023844:+39813 Msa1411850:intron
AAGCAGTCAGCCGCAACCGC+TGG 0.478137 tig0023844:+38892 Msa1411850:intron
TAAATGAACTAAGGAATTTG+TGG 0.487302 tig0023844:+38734 Msa1411850:CDS
ATACACTTTGATCAGTTGTA+GGG 0.491753 tig0023844:-40276 None:intergenic
GGAGGTGGTGGTGAAATGAA+AGG 0.495607 tig0023844:+37414 Msa1411850:CDS
GAGAAGTTAATTACTACTGC+AGG 0.495962 tig0023844:-39851 None:intergenic
AGTGGAAGAAGAAGAAGAGA+AGG 0.496753 tig0023844:+37353 Msa1411850:CDS
TGCTGATGGCTTGAAGGCAT+GGG 0.496945 tig0023844:+38402 Msa1411850:CDS
AATTCATCAATTGATTGCAC+AGG 0.498212 tig0023844:+39470 Msa1411850:CDS
CCGTTTGAAAGCTGAAGCAT+TGG 0.498244 tig0023844:-39594 None:intergenic
TAATGTGAGAAGTGCGTAGC+CGG 0.502440 tig0023844:-38491 None:intergenic
AGAAGGTGAGGGAAGAAGAA+GGG 0.503650 tig0023844:+37370 Msa1411850:CDS
GTGAGGGAAGAAGAAGGGAG+TGG 0.503857 tig0023844:+37375 Msa1411850:CDS
TGGTGAGAAAATAGTGAGAG+TGG 0.512691 tig0023844:+37335 Msa1411850:CDS
CCAATGCTTCAGCTTTCAAA+CGG 0.514454 tig0023844:+39594 Msa1411850:CDS
GGAACACAAGTCAGAACATC+CGG 0.514906 tig0023844:+40234 Msa1411850:CDS
ATTACTTCCATAACCAATGC+TGG 0.523079 tig0023844:-40338 None:intergenic
AATGAAAGGGCTTATGAGGT+GGG 0.528311 tig0023844:+37428 Msa1411850:CDS
TGAAGCATTGGAATGCATAA+GGG 0.528347 tig0023844:-39582 None:intergenic
TGTGTATCACTTTCATCTTG+AGG 0.529215 tig0023844:-38925 None:intergenic
GAGATAAGTCTTTGATCCTC+CGG 0.529482 tig0023844:-40253 None:intergenic
AGTGCGTAGCCGGATATGGC+TGG 0.534736 tig0023844:-38481 None:intergenic
AGTGGAACTGAGAGTAGAGG+AGG 0.535060 tig0023844:+37393 Msa1411850:CDS
AAAGATCCAACTGTGGAGAA+TGG 0.536900 tig0023844:-39502 None:intergenic
TGGTGGAAGTGTTGAACCAT+AGG 0.536921 tig0023844:-40035 None:intergenic
TTCTGATATTTAAGAAGTCA+AGG 0.543301 tig0023844:-40830 None:intergenic
GGGAGTGGAACTGAGAGTAG+AGG 0.544569 tig0023844:+37390 Msa1411850:CDS
ATTCACATCGAGCTATGCTA+CGG 0.546537 tig0023844:+40452 Msa1411850:CDS
CACAGCATATACAGATCAAG+TGG 0.548302 tig0023844:-40853 None:intergenic
AGAAGGATCTCACCGAAGAA+AGG 0.548442 tig0023844:+39555 Msa1411850:CDS
AGATCCTTCTCAAAGTTGCT+GGG 0.549454 tig0023844:-39542 None:intergenic
AAGAAGAAGAAGAGAAGGTG+AGG 0.553208 tig0023844:+37358 Msa1411850:CDS
GAGGTGGTGGTGAAATGAAA+GGG 0.554612 tig0023844:+37415 Msa1411850:CDS
AACGCTGCTAGTAATCGTTC+CGG 0.555367 tig0023844:+38976 Msa1411850:CDS
TTTAGGAATGCTAGCATCAG+TGG 0.555975 tig0023844:+39347 Msa1411850:CDS
AGAAGAAGAAGAGAAGGTGA+GGG 0.557623 tig0023844:+37359 Msa1411850:CDS
CGATTCGAATAAATGAACTA+AGG 0.559225 tig0023844:+38725 Msa1411850:CDS
AAATGAAAGGGCTTATGAGG+TGG 0.560859 tig0023844:+37427 Msa1411850:CDS
TCGAGGAACACAACTGAACC+GGG 0.562948 tig0023844:-40091 None:intergenic
ACTTGACATTCATTTAGGCC+AGG 0.566880 tig0023844:+39104 Msa1411850:CDS
AGAACAGCAGCAGTTTCAGA+GGG 0.568196 tig0023844:+40400 Msa1411850:CDS
CAACTTCACATTCTCAGCAA+GGG 0.576831 tig0023844:+39960 Msa1411850:CDS
GCAACTTCACATTCTCAGCA+AGG 0.583947 tig0023844:+39959 Msa1411850:CDS
GGATCCAATAAACAACAACA+TGG 0.585441 tig0023844:+37296 Msa1411850:exon
TCAGGTCCACCATCAATGCC+CGG 0.589208 tig0023844:+40073 Msa1411850:CDS
AGCGCAAATAATTGCAAGGA+CGG 0.590278 tig0023844:+39308 Msa1411850:CDS
TCATCCCAGCAACTTTGAGA+AGG 0.593867 tig0023844:+39538 Msa1411850:CDS
ACTGAACCGGGCATTGATGG+TGG 0.596008 tig0023844:-40079 None:intergenic
ATTGGTTATGGAAGTAATTG+CGG 0.597392 tig0023844:+40343 Msa1411850:CDS
TTCACATCGAGCTATGCTAC+GGG 0.598642 tig0023844:+40453 Msa1411850:CDS
AAAGAGAATCGGGATTCGGT+TGG 0.599964 tig0023844:-40700 None:intergenic
TATGGTTCAACACTTCCACC+AGG 0.607254 tig0023844:+40037 Msa1411850:CDS
GACAAGCGCAAATAATTGCA+AGG 0.612224 tig0023844:+39304 Msa1411850:CDS
GGAAGTAATTGCGGAAGTAG+CGG 0.613525 tig0023844:+40352 Msa1411850:CDS
AATGCAAGCAGCATCACCGC+CGG 0.616301 tig0023844:-38995 None:intergenic
ATCGCGCAGGACAGTCACGC+CGG 0.616762 tig0023844:+39132 Msa1411850:CDS
ACAAATTGTCCTTTAACTCG+AGG 0.617609 tig0023844:-40674 None:intergenic
TTGAGGGCCATTTATGCCAG+CGG 0.618633 tig0023844:-38908 None:intergenic
AATAAACAACAACATGGGTG+AGG 0.620435 tig0023844:+37302 Msa1411850:exon
TATATCAGGATCTAGAGGAA+AGG 0.621980 tig0023844:-40897 None:intergenic
AAATATATATCAGGATCTAG+AGG 0.622685 tig0023844:-40902 None:intergenic
CCTGATTGTGTACGAAACCC+TGG 0.626598 tig0023844:-40055 None:intergenic
AAGGCATGGGAAATACTCAA+AGG 0.628269 tig0023844:+38415 Msa1411850:CDS
TACACTTTGATCAGTTGTAG+GGG 0.630188 tig0023844:-40275 None:intergenic
AATGAAGAACTCACAAACAG+TGG 0.636681 tig0023844:+40427 Msa1411850:CDS
AAACCAAATTGTGTATACAC+AGG 0.639133 tig0023844:+40213 Msa1411850:CDS
GAATGCTAGCATCAGTGGTG+AGG 0.644176 tig0023844:+39352 Msa1411850:CDS
GATCCAATAAACAACAACAT+GGG 0.646005 tig0023844:+37297 Msa1411850:exon
AGGCCAGGCAGTGATCGCGC+AGG 0.648174 tig0023844:+39119 Msa1411850:CDS
GTTTGGAGAAGACAATCAGT+AGG 0.659439 tig0023844:+38763 Msa1411850:CDS
GTATACAAATGCATGTTGAG+AGG 0.663604 tig0023844:+38679 Msa1411850:CDS
CTGTTTCCATTTAGACCGCG+AGG 0.673170 tig0023844:-40184 None:intergenic
ATGGTTCAACACTTCCACCA+GGG 0.675718 tig0023844:+40038 Msa1411850:CDS
AAATATGTGACTTAGTGGAG+AGG 0.678737 tig0023844:+40765 Msa1411850:three_prime_UTR
GCGCAGGACAGTCACGCCGG+CGG 0.691540 tig0023844:+39135 Msa1411850:CDS
GCTGCTAGTAATCGTTCCGG+CGG 0.691660 tig0023844:+38979 Msa1411850:CDS
TCAATATCATACTTATGACA+GGG 0.693313 tig0023844:-38543 None:intergenic
ATGGGTGAGGTTGTAATGAG+TGG 0.695889 tig0023844:+37315 Msa1411850:CDS
CTGAGAGAAAGATCCAACTG+TGG 0.713368 tig0023844:-39509 None:intergenic
GAGCAGCTTTACGAACCTCG+CGG 0.732658 tig0023844:+40169 Msa1411850:CDS
ACACAAGTCAGAACATCCGG+AGG 0.742561 tig0023844:+40237 Msa1411850:CDS
GATTGTGTACGAAACCCTGG+TGG 0.767923 tig0023844:-40052 None:intergenic
AGTATCAGATCAATACTGCG+CGG 0.783873 tig0023844:-38442 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTACAATTTTTTTTTTTTTT+TGG + tig0023844:37771-37790 Msa1411850:intron 10.0%
!! TAATAATTACAAAAATTAAG+GGG + tig0023844:37998-38017 Msa1411850:intron 10.0%
!! TAAGAATTTATTAACAAAAT+TGG + tig0023844:38836-38855 Msa1411850:intron 10.0%
!! AAGAATTTATTAACAAAATT+GGG + tig0023844:38837-38856 Msa1411850:intron 10.0%
!!! ATTATTGAGTTTTATTATCT+TGG + tig0023844:38279-38298 Msa1411850:intron 15.0%
!!! TTGAACAAACTTTTATTTTT+AGG + tig0023844:39221-39240 Msa1411850:intron 15.0%
!!! ACTTATTTATACTTTTTAAC+AGG + tig0023844:40613-40632 Msa1411850:intron 15.0%
!!! GTTGTTATTAAATATATATC+AGG - tig0023844:40914-40933 None:intergenic 15.0%
!! GTAAATATTAGGTTATATTG+AGG + tig0023844:37817-37836 Msa1411850:intron 20.0%
!! ATTAGAAATTTAGAAGTCTT+TGG + tig0023844:37910-37929 Msa1411850:intron 20.0%
!! CGAAAAAATTAGAATAGAAA+GGG - tig0023844:39632-39651 None:intergenic 20.0%
!! ACGAAAAAATTAGAATAGAA+AGG - tig0023844:39633-39652 None:intergenic 20.0%
! CTTAGAAAATGCAACTATAA+AGG + tig0023844:37531-37550 Msa1411850:CDS 25.0%
! AATATTGCTGTGTGTTTAAT+TGG + tig0023844:37606-37625 Msa1411850:intron 25.0%
! AATATTGCTGTGTGTTTAAT+TGG + tig0023844:37606-37625 Msa1411850:intron 25.0%
! AATTACAAAAATTAAGGGGA+TGG + tig0023844:38002-38021 Msa1411850:intron 25.0%
!!! TTTTTTAAAGAGAAGTGACA+TGG + tig0023844:38126-38145 Msa1411850:intron 25.0%
! GAATAATTGTACCAAGTTTA+TGG - tig0023844:38232-38251 None:intergenic 25.0%
! TAGAACTTAGATTTACTTTC+AGG - tig0023844:38338-38357 None:intergenic 25.0%
! TCAATATCATACTTATGACA+GGG - tig0023844:38546-38565 None:intergenic 25.0%
! TTCAATATCATACTTATGAC+AGG - tig0023844:38547-38566 None:intergenic 25.0%
! CTTAGTTCATTTATTCGAAT+CGG - tig0023844:38727-38746 None:intergenic 25.0%
! TAAATGAACTAAGGAATTTG+TGG + tig0023844:38734-38753 Msa1411850:CDS 25.0%
! AATAAGGACTTAATTGAGAA+AGG + tig0023844:39024-39043 Msa1411850:CDS 25.0%
!!! TTTATTTTTAGGATTAAGCG+TGG + tig0023844:39232-39251 Msa1411850:intron 25.0%
! AGCACAAATAACTGTAAAAA+TGG + tig0023844:39278-39297 Msa1411850:CDS 25.0%
! TCAAATTTACTCTACTACTA+AGG + tig0023844:39394-39413 Msa1411850:CDS 25.0%
! AAGAACTTCAAAACATGATA+CGG + tig0023844:39696-39715 Msa1411850:intron 25.0%
! AAGGTTAAATGATCTTTGTA+TGG + tig0023844:40012-40031 Msa1411850:CDS 25.0%
! TCCAGTAGTATTTGTAATAA+TGG + tig0023844:40298-40317 Msa1411850:CDS 25.0%
! TCCATTATTACAAATACTAC+TGG - tig0023844:40302-40321 None:intergenic 25.0%
! TTCTGATATTTAAGAAGTCA+AGG - tig0023844:40833-40852 None:intergenic 25.0%
! AAATATATATCAGGATCTAG+AGG - tig0023844:40905-40924 None:intergenic 25.0%
! TAAAACTACAACTGTATATC+AGG - tig0023844:40936-40955 None:intergenic 25.0%
GATCCAATAAACAACAACAT+GGG + tig0023844:37297-37316 Msa1411850:exon 30.0%
! TTTTGTTAGCTGAGAATCTT+AGG + tig0023844:38150-38169 Msa1411850:intron 30.0%
TGCTATAAGACTCTATTTCA+AGG - tig0023844:38187-38206 None:intergenic 30.0%
! AATAGAGTCTTATAGCAGTA+TGG + tig0023844:38190-38209 Msa1411850:intron 30.0%
ATAGCAGTATGGAAATTACT+AGG + tig0023844:38201-38220 Msa1411850:intron 30.0%
CGATTCGAATAAATGAACTA+AGG + tig0023844:38725-38744 Msa1411850:CDS 30.0%
TGCTTGCATTCAAAGAAATA+AGG + tig0023844:39008-39027 Msa1411850:CDS 30.0%
! TCTTGTGTCTTTATTTCACT+TGG - tig0023844:39084-39103 None:intergenic 30.0%
CAAGAACTTGACATTCATTT+AGG + tig0023844:39099-39118 Msa1411850:CDS 30.0%
!!! GAATTTTTGAGACTGCAATT+CGG - tig0023844:39455-39474 None:intergenic 30.0%
AATTCATCAATTGATTGCAC+AGG + tig0023844:39470-39489 Msa1411850:CDS 30.0%
! GTGTATGATTTTTATGCTTG+TGG + tig0023844:39732-39751 Msa1411850:intron 30.0%
GTATTGAACTATCTGAGTTA+TGG - tig0023844:39913-39932 None:intergenic 30.0%
! TCAGATTCTTTTTGCATACT+TGG - tig0023844:39935-39954 None:intergenic 30.0%
! TTTAACCTTACACCTTTTAC+AGG - tig0023844:40001-40020 None:intergenic 30.0%
TGTGTATACACAATTTGGTT+TGG - tig0023844:40214-40233 None:intergenic 30.0%
AAACCAAATTGTGTATACAC+AGG + tig0023844:40213-40232 Msa1411850:CDS 30.0%
ATACACTTTGATCAGTTGTA+GGG - tig0023844:40279-40298 None:intergenic 30.0%
!!! AATTTTACCAGCATTGGTTA+TGG + tig0023844:40331-40350 Msa1411850:CDS 30.0%
ATTGGTTATGGAAGTAATTG+CGG + tig0023844:40343-40362 Msa1411850:CDS 30.0%
! ATCTCTCTTTTCGTTTCAAA+CGG - tig0023844:40498-40517 None:intergenic 30.0%
AGAGAGATGTTATGAAAAGA+AGG + tig0023844:40510-40529 Msa1411850:CDS 30.0%
! TTTTTCTCCAGAAAGAGAAT+CGG - tig0023844:40714-40733 None:intergenic 30.0%
TTAGCAAATATGTGACTTAG+TGG + tig0023844:40760-40779 Msa1411850:three_prime_UTR 30.0%
GGAAAGGCAAAAAAGAAAAA+TGG - tig0023844:40884-40903 None:intergenic 30.0%
!! TATACGCTGATTCTTGTCTT+TGG + tig0023844:37275-37294 Msa1411850:five_prime_UTR 35.0%
GGATCCAATAAACAACAACA+TGG + tig0023844:37296-37315 Msa1411850:exon 35.0%
!! TCACCCATGTTGTTGTTTAT+TGG - tig0023844:37303-37322 None:intergenic 35.0%
AATAAACAACAACATGGGTG+AGG + tig0023844:37302-37321 Msa1411850:exon 35.0%
GGAGAAATTCTTGCCAAAAA+TGG + tig0023844:37449-37468 Msa1411850:CDS 35.0%
!! TCTTGCCAAAAATGGTTTTG+AGG + tig0023844:37457-37476 Msa1411850:CDS 35.0%
!!! CTTGCCAAAAATGGTTTTGA+GGG + tig0023844:37458-37477 Msa1411850:CDS 35.0%
! AGTCTTTGGACTGCAAATTT+TGG + tig0023844:37924-37943 Msa1411850:intron 35.0%
!! TTGGACTGCAAATTTTGGAA+AGG + tig0023844:37929-37948 Msa1411850:intron 35.0%
!! GCAAATTTTGGAAAGGATCA+AGG + tig0023844:37936-37955 Msa1411850:intron 35.0%
ACTAGGTTAAGCCATAAACT+TGG + tig0023844:38218-38237 Msa1411850:intron 35.0%
CGCACTTCTCACATTAATTA+TGG + tig0023844:38498-38517 Msa1411850:CDS 35.0%
GTATACAAATGCATGTTGAG+AGG + tig0023844:38679-38698 Msa1411850:CDS 35.0%
GTGTATCACTTTCATCTTGA+GGG - tig0023844:38927-38946 None:intergenic 35.0%
TGTGTATCACTTTCATCTTG+AGG - tig0023844:38928-38947 None:intergenic 35.0%
GAAAGAAAGAAATTTACCGC+CGG - tig0023844:39154-39173 None:intergenic 35.0%
!! AAGGAAGCTATTGACTTGAT+TGG + tig0023844:39413-39432 Msa1411850:CDS 35.0%
!! TGAAGCATTGGAATGCATAA+GGG - tig0023844:39585-39604 None:intergenic 35.0%
TGTTTGTATACCTGCATGAA+TGG - tig0023844:39814-39833 None:intergenic 35.0%
ATTCATGCAGGTATACAAAC+AGG + tig0023844:39813-39832 Msa1411850:intron 35.0%
GAGAAGTTAATTACTACTGC+AGG - tig0023844:39854-39873 None:intergenic 35.0%
! CTTACACCTTTTACAGGAAT+CGG - tig0023844:39995-40014 None:intergenic 35.0%
AATGATCTTTGTATGGCCTA+TGG + tig0023844:40019-40038 Msa1411850:CDS 35.0%
GTTCCTGTGTATACACAATT+TGG - tig0023844:40219-40238 None:intergenic 35.0%
TACACTTTGATCAGTTGTAG+GGG - tig0023844:40278-40297 None:intergenic 35.0%
GATACACTTTGATCAGTTGT+AGG - tig0023844:40280-40299 None:intergenic 35.0%
ATTACTTCCATAACCAATGC+TGG - tig0023844:40341-40360 None:intergenic 35.0%
AATGAAGAACTCACAAACAG+TGG + tig0023844:40427-40446 Msa1411850:CDS 35.0%
ACAAATTGTCCTTTAACTCG+AGG - tig0023844:40677-40696 None:intergenic 35.0%
! TTTTCTCCAGAAAGAGAATC+GGG - tig0023844:40713-40732 None:intergenic 35.0%
AAATATGTGACTTAGTGGAG+AGG + tig0023844:40765-40784 Msa1411850:three_prime_UTR 35.0%
TATATCAGGATCTAGAGGAA+AGG - tig0023844:40900-40919 None:intergenic 35.0%
AGCGTATAGCATCAGAATCT+TGG - tig0023844:37263-37282 None:intergenic 40.0%
TGGTGAGAAAATAGTGAGAG+TGG + tig0023844:37335-37354 Msa1411850:CDS 40.0%
AGTGGAAGAAGAAGAAGAGA+AGG + tig0023844:37353-37372 Msa1411850:CDS 40.0%
AAGAAGAAGAAGAGAAGGTG+AGG + tig0023844:37358-37377 Msa1411850:CDS 40.0%
AGAAGAAGAAGAGAAGGTGA+GGG + tig0023844:37359-37378 Msa1411850:CDS 40.0%
GTGAAATGAAAGGGCTTATG+AGG + tig0023844:37424-37443 Msa1411850:CDS 40.0%
AAATGAAAGGGCTTATGAGG+TGG + tig0023844:37427-37446 Msa1411850:CDS 40.0%
AATGAAAGGGCTTATGAGGT+GGG + tig0023844:37428-37447 Msa1411850:CDS 40.0%
! AGCACCCTCAAAACCATTTT+TGG - tig0023844:37465-37484 None:intergenic 40.0%
!!! AATGGTTTTGAGGGTGCTTT+TGG + tig0023844:37467-37486 Msa1411850:CDS 40.0%
AAGGCATGGGAAATACTCAA+AGG + tig0023844:38415-38434 Msa1411850:CDS 40.0%
AGTATCAGATCAATACTGCG+CGG - tig0023844:38445-38464 None:intergenic 40.0%
GTTTGGAGAAGACAATCAGT+AGG + tig0023844:38763-38782 Msa1411850:CDS 40.0%
ACTTGACATTCATTTAGGCC+AGG + tig0023844:39104-39123 Msa1411850:CDS 40.0%
!! ATCATTTTGTTCGACTCGCA+AGG + tig0023844:39182-39201 Msa1411850:intron 40.0%
GACAAGCGCAAATAATTGCA+AGG + tig0023844:39304-39323 Msa1411850:CDS 40.0%
AGCGCAAATAATTGCAAGGA+CGG + tig0023844:39308-39327 Msa1411850:CDS 40.0%
!!! GCGATGATCAAGAGCATTTT+AGG + tig0023844:39330-39349 Msa1411850:CDS 40.0%
TTTAGGAATGCTAGCATCAG+TGG + tig0023844:39347-39366 Msa1411850:CDS 40.0%
AAAGATCCAACTGTGGAGAA+TGG - tig0023844:39505-39524 None:intergenic 40.0%
AGATCCTTCTCAAAGTTGCT+GGG - tig0023844:39545-39564 None:intergenic 40.0%
!! CTGAAGCATTGGAATGCATA+AGG - tig0023844:39586-39605 None:intergenic 40.0%
CCAATGCTTCAGCTTTCAAA+CGG + tig0023844:39594-39613 Msa1411850:CDS 40.0%
GCATGCAGAATTCAACAAAG+CGG - tig0023844:39772-39791 None:intergenic 40.0%
CTGCATGCTTATCACTGAAA+TGG + tig0023844:39784-39803 Msa1411850:intron 40.0%
AAATGGTGTTCCATTCATGC+AGG + tig0023844:39801-39820 Msa1411850:intron 40.0%
CAACTTCACATTCTCAGCAA+GGG + tig0023844:39960-39979 Msa1411850:CDS 40.0%
TCTCTTCCGATTCCTGTAAA+AGG + tig0023844:39986-40005 Msa1411850:CDS 40.0%
! CGATTCCTGTAAAAGGTGTA+AGG + tig0023844:39993-40012 Msa1411850:CDS 40.0%
!!! CTGCTTGAAAGTTTTGTTCG+AGG - tig0023844:40111-40130 None:intergenic 40.0%
GAGATAAGTCTTTGATCCTC+CGG - tig0023844:40256-40275 None:intergenic 40.0%
ACCAATGCTGGTAAAATTGC+TGG - tig0023844:40329-40348 None:intergenic 40.0%
ATTCACATCGAGCTATGCTA+CGG + tig0023844:40452-40471 Msa1411850:CDS 40.0%
CACAGCATATACAGATCAAG+TGG - tig0023844:40856-40875 None:intergenic 40.0%
ATGGGTGAGGTTGTAATGAG+TGG + tig0023844:37315-37334 Msa1411850:CDS 45.0%
AGAAGGTGAGGGAAGAAGAA+GGG + tig0023844:37370-37389 Msa1411850:CDS 45.0%
! GAGGTGGTGGTGAAATGAAA+GGG + tig0023844:37415-37434 Msa1411850:CDS 45.0%
TTGGAAAGGATCAAGGCTCA+AGG + tig0023844:37943-37962 Msa1411850:intron 45.0%
TGGAAAGGATCAAGGCTCAA+GGG + tig0023844:37944-37963 Msa1411850:intron 45.0%
! TAATGTGAGAAGTGCGTAGC+CGG - tig0023844:38494-38513 None:intergenic 45.0%
GGAATTTGTGGCAGCATGTT+TGG + tig0023844:38746-38765 Msa1411850:CDS 45.0%
AACGCTGCTAGTAATCGTTC+CGG + tig0023844:38976-38995 Msa1411850:CDS 45.0%
AGCGTGGCTAACTGCAAAAA+TGG + tig0023844:39248-39267 Msa1411850:CDS 45.0%
GGCTAACTGCAAAAATGGAG+TGG + tig0023844:39253-39272 Msa1411850:CDS 45.0%
GTTTGACCATTCTCCACAGT+TGG + tig0023844:39496-39515 Msa1411850:CDS 45.0%
CTGAGAGAAAGATCCAACTG+TGG - tig0023844:39512-39531 None:intergenic 45.0%
! TCATCCCAGCAACTTTGAGA+AGG + tig0023844:39538-39557 Msa1411850:CDS 45.0%
GAGATCCTTCTCAAAGTTGC+TGG - tig0023844:39546-39565 None:intergenic 45.0%
AGAAGGATCTCACCGAAGAA+AGG + tig0023844:39555-39574 Msa1411850:CDS 45.0%
! CATAAGGGTGTGCCTTTCTT+CGG - tig0023844:39570-39589 None:intergenic 45.0%
CCGTTTGAAAGCTGAAGCAT+TGG - tig0023844:39597-39616 None:intergenic 45.0%
GCAACTTCACATTCTCAGCA+AGG + tig0023844:39959-39978 Msa1411850:CDS 45.0%
!! TGGTGGAAGTGTTGAACCAT+AGG - tig0023844:40038-40057 None:intergenic 45.0%
TATGGTTCAACACTTCCACC+AGG + tig0023844:40037-40056 Msa1411850:CDS 45.0%
ATGGTTCAACACTTCCACCA+GGG + tig0023844:40038-40057 Msa1411850:CDS 45.0%
TTCGAGGAACACAACTGAAC+CGG - tig0023844:40095-40114 None:intergenic 45.0%
GGAACACAAGTCAGAACATC+CGG + tig0023844:40234-40253 Msa1411850:CDS 45.0%
! GCCAGCAATTTTACCAGCAT+TGG + tig0023844:40325-40344 Msa1411850:CDS 45.0%
GGAAGTAATTGCGGAAGTAG+CGG + tig0023844:40352-40371 Msa1411850:CDS 45.0%
AGAACAGCAGCAGTTTCAGA+GGG + tig0023844:40400-40419 Msa1411850:CDS 45.0%
TTCACATCGAGCTATGCTAC+GGG + tig0023844:40453-40472 Msa1411850:CDS 45.0%
! AAAGAGAATCGGGATTCGGT+TGG - tig0023844:40703-40722 None:intergenic 45.0%
CCAGAAAGAGAATCGGGATT+CGG - tig0023844:40707-40726 None:intergenic 45.0%
!! TTTAATTAATTGTAAATATT+AGG + tig0023844:37806-37825 Msa1411850:intron 5.0%
!! TTTAATAATTACAAAAATTA+AGG + tig0023844:37996-38015 Msa1411850:intron 5.0%
!! TTAATAATTACAAAAATTAA+GGG + tig0023844:37997-38016 Msa1411850:intron 5.0%
!! AATTAATTTAAGTATTAATA+AGG - tig0023844:38602-38621 None:intergenic 5.0%
GAGAAGGTGAGGGAAGAAGA+AGG + tig0023844:37369-37388 Msa1411850:CDS 50.0%
AGTGGAACTGAGAGTAGAGG+AGG + tig0023844:37393-37412 Msa1411850:CDS 50.0%
! GGAGGTGGTGGTGAAATGAA+AGG + tig0023844:37414-37433 Msa1411850:CDS 50.0%
TGCTGTTGCTGATGGCTTGA+AGG + tig0023844:38396-38415 Msa1411850:CDS 50.0%
TTGCTGATGGCTTGAAGGCA+TGG + tig0023844:38401-38420 Msa1411850:CDS 50.0%
! TGCTGATGGCTTGAAGGCAT+GGG + tig0023844:38402-38421 Msa1411850:CDS 50.0%
!! GTCGATTTGCCAGCCATATC+CGG + tig0023844:38472-38491 Msa1411850:CDS 50.0%
GAATCTTGCGACGACATCAC+TGG - tig0023844:38649-38668 None:intergenic 50.0%
TTGAGGGCCATTTATGCCAG+CGG - tig0023844:38911-38930 None:intergenic 50.0%
!! AGCAGCGTTGTTTTCAGCAG+TGG - tig0023844:38965-38984 None:intergenic 50.0%
GAATGCTAGCATCAGTGGTG+AGG + tig0023844:39352-39371 Msa1411850:CDS 50.0%
GATTGTGTACGAAACCCTGG+TGG - tig0023844:40055-40074 None:intergenic 50.0%
CCTGATTGTGTACGAAACCC+TGG - tig0023844:40058-40077 None:intergenic 50.0%
CCAGGGTTTCGTACACAATC+AGG + tig0023844:40055-40074 Msa1411850:CDS 50.0%
!! ACAACTGAACCGGGCATTGA+TGG - tig0023844:40085-40104 None:intergenic 50.0%
TCGAGGAACACAACTGAACC+GGG - tig0023844:40094-40113 None:intergenic 50.0%
TACGAACCTCGCGGTCTAAA+TGG + tig0023844:40178-40197 Msa1411850:CDS 50.0%
CTGTTTCCATTTAGACCGCG+AGG - tig0023844:40187-40206 None:intergenic 50.0%
ACACAAGTCAGAACATCCGG+AGG + tig0023844:40237-40256 Msa1411850:CDS 50.0%
CAGAACAGCAGCAGTTTCAG+AGG + tig0023844:40399-40418 Msa1411850:CDS 50.0%
CCGAATCCCGATTCTCTTTC+TGG + tig0023844:40704-40723 Msa1411850:CDS 50.0%
GTGAGGGAAGAAGAAGGGAG+TGG + tig0023844:37375-37394 Msa1411850:CDS 55.0%
GGGAGTGGAACTGAGAGTAG+AGG + tig0023844:37390-37409 Msa1411850:CDS 55.0%
GGAACTGAGAGTAGAGGAGG+AGG + tig0023844:37396-37415 Msa1411850:CDS 55.0%
ACTGAGAGTAGAGGAGGAGG+TGG + tig0023844:37399-37418 Msa1411850:CDS 55.0%
GCAGTTGCTGCTGTTGCTGA+TGG + tig0023844:38388-38407 Msa1411850:intron 55.0%
! GAGAAGTGCGTAGCCGGATA+TGG - tig0023844:38488-38507 None:intergenic 55.0%
GCCATTTATGCCAGCGGTTG+CGG - tig0023844:38905-38924 None:intergenic 55.0%
GCTGCTAGTAATCGTTCCGG+CGG + tig0023844:38979-38998 Msa1411850:CDS 55.0%
AATGCAAGCAGCATCACCGC+CGG - tig0023844:38998-39017 None:intergenic 55.0%
TCAGGTCCACCATCAATGCC+CGG + tig0023844:40073-40092 Msa1411850:CDS 55.0%
!! ACTGAACCGGGCATTGATGG+TGG - tig0023844:40082-40101 None:intergenic 55.0%
GAGCAGCTTTACGAACCTCG+CGG + tig0023844:40169-40188 Msa1411850:CDS 55.0%
GAGCAGCGTCCTCGAGTTAA+AGG + tig0023844:40665-40684 Msa1411850:CDS 55.0%
GAGAGTAGAGGAGGAGGTGG+TGG + tig0023844:37402-37421 Msa1411850:CDS 60.0%
AGTGCGTAGCCGGATATGGC+TGG - tig0023844:38484-38503 None:intergenic 60.0%
GCCGCAACCGCTGGCATAAA+TGG + tig0023844:38901-38920 Msa1411850:CDS 60.0%
AAGCAGTCAGCCGCAACCGC+TGG + tig0023844:38892-38911 Msa1411850:intron 65.0%
TGTCCTGCGCGATCACTGCC+TGG - tig0023844:39125-39144 None:intergenic 65.0%
ATCGCGCAGGACAGTCACGC+CGG + tig0023844:39132-39151 Msa1411850:CDS 65.0%
AGGCCAGGCAGTGATCGCGC+AGG + tig0023844:39119-39138 Msa1411850:CDS 70.0%
GCGCAGGACAGTCACGCCGG+CGG + tig0023844:39135-39154 Msa1411850:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0023844 gene 37241 40963 37241 ID=Msa1411850;Name=Msa1411850
tig0023844 mRNA 37241 40963 37241 ID=Msa1411850-mRNA-1;Parent=Msa1411850;Name=Msa1411850-mRNA-1;_AED=0.06;_eAED=0.07;_QI=74|0.83|0.85|1|1|1|7|221|668
tig0023844 exon 37241 37552 37241 ID=Msa1411850-mRNA-1:exon:20334;Parent=Msa1411850-mRNA-1
tig0023844 exon 38392 38553 38392 ID=Msa1411850-mRNA-1:exon:20335;Parent=Msa1411850-mRNA-1
tig0023844 exon 38650 38807 38650 ID=Msa1411850-mRNA-1:exon:20336;Parent=Msa1411850-mRNA-1
tig0023844 exon 38898 39156 38898 ID=Msa1411850-mRNA-1:exon:20337;Parent=Msa1411850-mRNA-1
tig0023844 exon 39243 39615 39243 ID=Msa1411850-mRNA-1:exon:20338;Parent=Msa1411850-mRNA-1
tig0023844 exon 39823 40531 39823 ID=Msa1411850-mRNA-1:exon:20339;Parent=Msa1411850-mRNA-1
tig0023844 exon 40635 40963 40635 ID=Msa1411850-mRNA-1:exon:20340;Parent=Msa1411850-mRNA-1
tig0023844 five_prime_UTR 37241 37314 37241 ID=Msa1411850-mRNA-1:five_prime_utr;Parent=Msa1411850-mRNA-1
tig0023844 CDS 37315 37552 37315 ID=Msa1411850-mRNA-1:cds;Parent=Msa1411850-mRNA-1
tig0023844 CDS 38392 38553 38392 ID=Msa1411850-mRNA-1:cds;Parent=Msa1411850-mRNA-1
tig0023844 CDS 38650 38807 38650 ID=Msa1411850-mRNA-1:cds;Parent=Msa1411850-mRNA-1
tig0023844 CDS 38898 39156 38898 ID=Msa1411850-mRNA-1:cds;Parent=Msa1411850-mRNA-1
tig0023844 CDS 39243 39615 39243 ID=Msa1411850-mRNA-1:cds;Parent=Msa1411850-mRNA-1
tig0023844 CDS 39823 40531 39823 ID=Msa1411850-mRNA-1:cds;Parent=Msa1411850-mRNA-1
tig0023844 CDS 40635 40742 40635 ID=Msa1411850-mRNA-1:cds;Parent=Msa1411850-mRNA-1
tig0023844 three_prime_UTR 40743 40963 40743 ID=Msa1411850-mRNA-1:three_prime_utr;Parent=Msa1411850-mRNA-1
Gene Sequence

>Msa1411850

ATGGGTGAGGTTGTAATGAGTGGTGAGAAAATAGTGAGAGTGGAAGAAGAAGAAGAGAAGGTGAGGGAAGAAGAAGGGAGTGGAACTGAGAGTAGAGGAGGAGGTGGTGGTGAAATGAAAGGGCTTATGAGGTGGGAGAAATTCTTGCCAAAAATGGTTTTGAGGGTGCTTTTGGTTGAAGCTGATGATTGTACAAGACAGATTATTACAGCACTTCTTAGAAAATGCAACTATAAAGTTGCTGCTGTTGCTGATGGCTTGAAGGCATGGGAAATACTCAAAGGAAGACCGCGCAGTATTGATCTGATACTTACAGAAGTCGATTTGCCAGCCATATCCGGCTACGCACTTCTCACATTAATTATGGAGCATGATATTTGCAAGAGCATCCCTGTCATAATGATGTCGTCGCAAGATTCAGTTAGCACAGTATACAAATGCATGTTGAGAGGTGCAGCTGACTATCTTGTTAAGCCGATTCGAATAAATGAACTAAGGAATTTGTGGCAGCATGTTTGGAGAAGACAATCAGTAGGACTTCTGCTCTCTCAATTTTCATCAGCCGCAACCGCTGGCATAAATGGCCCTCAAGATGAAAGTGATACACAACAGAAGTTTGAAGCCACTGCTGAAAACAACGCTGCTAGTAATCGTTCCGGCGGTGATGCTGCTTGCATTCAAAGAAATAAGGACTTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTGCTGAAGCATATCCAAGTGAAATAAAGACACAAGAACTTGACATTCATTTAGGCCAGGCAGTGATCGCGCAGGACAGTCACGCCGGCGGATTAAGCGTGGCTAACTGCAAAAATGGAGTGGCAAGCACAAATAACTGTAAAAATGGAGAGACAAGCGCAAATAATTGCAAGGACGGCGATGATCAAGAGCATTTTAGGAATGCTAGCATCAGTGGTGAGGTTCATGACAATCACTATGTTCAAATTTACTCTACTACTAAGGAAGCTATTGACTTGATTGGAGCATTTCGTACTGATCCGAATTGCAGTCTCAAAAATTCATCAATTGATTGCACAGGCAAGTTTGACCATTCTCCACAGTTGGATCTTTCTCTCAGAAGCTCTCATCCCAGCAACTTTGAGAAGGATCTCACCGAAGAAAGGCACACCCTTATGCATTCCAATGCTTCAGCTTTCAAACGGTATACAAACAGGCAATTGCAAGCGTCACCTGCAGTAGTAATTAACTTCTCTGATCAACAAAGAGAACAAAAAACAAATAATGAGAACCATAACTCAGATAGTTCAATACCAAGTATGCAAAAAGAATCTGAACTTGCAACTTCACATTCTCAGCAAGGGCATTCTCTTCCGATTCCTGTAAAAGGTGTAAGGTTAAATGATCTTTGTATGGCCTATGGTTCAACACTTCCACCAGGGTTTCGTACACAATCAGGTCCACCATCAATGCCCGGTTCAGTTGTGTTCCTCGAACAAAACTTTCAAGCAGATGCATTTTATCAGTCAAATGTTAAAGAAAATAATTCAGAGCAGCTTTACGAACCTCGCGGTCTAAATGGAAACAGCACTCCAAACCAAATTGTGTATACACAGGAACACAAGTCAGAACATCCGGAGGATCAAAGACTTATCTCCCCTACAACTGATCAAAGTGTATCCAGTAGTATTTGTAATAATGGAAATGCCAGCAATTTTACCAGCATTGGTTATGGAAGTAATTGCGGAAGTAGCGGCAATGTTGAACAAGTTGCAACTTTCAGAACAGCAGCAGTTTCAGAGGGAAAGAATGAAGAACTCACAAACAGTGGATATTCACATCGAGCTATGCTACGGGAAGCAGCTCTAAACAAGTTCCGTTTGAAACGAAAAGAGAGATGTTATGAAAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCTCGAGTTAAAGGACAATTTGTTCGCCAACCGAATCCCGATTCTCTTTCTGGAGAAAAAGATTGCTAA
Protein sequence

>Msa1411850

MGEVVMSGEKIVRVEEEEEKVREEEGSGTESRGGGGGEMKGLMRWEKFLPKMVLRVLLVEADDCTRQIITALLRKCNYKVAAVADGLKAWEILKGRPRSIDLILTEVDLPAISGYALLTLIMEHDICKSIPVIMMSSQDSVSTVYKCMLRGAADYLVKPIRINELRNLWQHVWRRQSVGLLLSQFSSAATAGINGPQDESDTQQKFEATAENNAASNRSGGDAACIQRNKDLIEKGSDAQSSCAEAYPSEIKTQELDIHLGQAVIAQDSHAGGLSVANCKNGVASTNNCKNGETSANNCKDGDDQEHFRNASISGEVHDNHYVQIYSTTKEAIDLIGAFRTDPNCSLKNSSIDCTGKFDHSPQLDLSLRSSHPSNFEKDLTEERHTLMHSNASAFKRYTNRQLQASPAVVINFSDQQREQKTNNENHNSDSSIPSMQKESELATSHSQQGHSLPIPVKGVRLNDLCMAYGSTLPPGFRTQSGPPSMPGSVVFLEQNFQADAFYQSNVKENNSEQLYEPRGLNGNSTPNQIVYTQEHKSEHPEDQRLISPTTDQSVSSSICNNGNASNFTSIGYGSNCGSSGNVEQVATFRTAAVSEGKNEELTNSGYSHRAMLREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQPNPDSLSGEKDC*