Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037170 | sp|O49169|EF1A_MANES | 95.749 | 447 | 18 | 1 | 1 | 447 | 1 | 446 | 0.0 | 882 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037170 | Msa0177220 | 0.907246 | 6.233992e-81 | -8.615850e-47 |
| Msa0037170 | Msa0177400 | 0.809183 | 2.146000e-50 | -8.615850e-47 |
| Msa0037170 | Msa0177430 | 0.852528 | 4.352510e-61 | -8.615850e-47 |
| Msa0037170 | Msa0177450 | 0.945437 | 3.061432e-104 | -8.615850e-47 |
| Msa0037170 | Msa0177470 | 0.816646 | 4.968141e-52 | -8.615850e-47 |
| Msa0037170 | Msa1438480 | 0.800507 | 1.395262e-48 | -8.615850e-47 |
| Msa0037170 | Msa1444000 | 0.815723 | 7.989541e-52 | -8.615850e-47 |
| Msa0037170 | Msa1461200 | 0.800196 | 1.614345e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037170 | MtrunA17_Chr1g0200121 | 99.554 | 448 | 2 | 0 | 1 | 448 | 1 | 448 | 0.0 | 918 |
| Msa0037170 | MtrunA17_Chr1g0200071 | 99.777 | 448 | 1 | 0 | 1 | 448 | 1 | 448 | 0.0 | 918 |
| Msa0037170 | MtrunA17_Chr1g0200091 | 99.777 | 448 | 1 | 0 | 1 | 448 | 1 | 448 | 0.0 | 918 |
| Msa0037170 | MtrunA17_Chr4g0005781 | 96.205 | 448 | 16 | 1 | 1 | 448 | 1 | 447 | 0.0 | 887 |
| Msa0037170 | MtrunA17_Chr6g0458111 | 97.477 | 436 | 11 | 0 | 1 | 436 | 1 | 436 | 0.0 | 884 |
| Msa0037170 | MtrunA17_Chr6g0458091 | 97.477 | 436 | 11 | 0 | 1 | 436 | 1 | 436 | 0.0 | 884 |
| Msa0037170 | MtrunA17_Chr1g0150331 | 91.353 | 451 | 10 | 2 | 1 | 448 | 1 | 425 | 0.0 | 826 |
| Msa0037170 | MtrunA17_Chr1g0193591 | 82.488 | 434 | 76 | 0 | 1 | 434 | 1 | 434 | 0.0 | 741 |
| Msa0037170 | MtrunA17_Chr1g0204031 | 81.922 | 437 | 74 | 3 | 1 | 437 | 1 | 432 | 0.0 | 732 |
| Msa0037170 | MtrunA17_Chr1g0156421 | 79.032 | 434 | 91 | 0 | 1 | 434 | 1 | 434 | 0.0 | 724 |
| Msa0037170 | MtrunA17_Chr8g0340771 | 79.733 | 449 | 89 | 1 | 1 | 447 | 1 | 449 | 0.0 | 720 |
| Msa0037170 | MtrunA17_Chr5g0415391 | 72.796 | 397 | 108 | 0 | 39 | 435 | 1 | 397 | 0.0 | 593 |
| Msa0037170 | MtrunA17_Chr1g0196251 | 69.479 | 403 | 95 | 2 | 4 | 405 | 5 | 380 | 0.0 | 573 |
| Msa0037170 | MtrunA17_Chr8g0336511 | 78.593 | 327 | 69 | 1 | 1 | 326 | 66 | 392 | 0.0 | 542 |
| Msa0037170 | MtrunA17_Chr2g0319341 | 71.965 | 346 | 94 | 2 | 102 | 445 | 1 | 345 | 0.0 | 514 |
| Msa0037170 | MtrunA17_Chr2g0298371 | 68.615 | 325 | 83 | 2 | 102 | 424 | 1 | 308 | 7.51e-160 | 454 |
| Msa0037170 | MtrunA17_Chr8g0340371 | 70.124 | 241 | 69 | 2 | 1 | 240 | 1 | 239 | 2.40e-118 | 345 |
| Msa0037170 | MtrunA17_Chr1g0210931 | 63.087 | 298 | 56 | 4 | 155 | 447 | 1 | 249 | 5.32e-118 | 345 |
| Msa0037170 | MtrunA17_Chr2g0318291 | 71.681 | 226 | 59 | 3 | 1 | 223 | 1 | 224 | 5.53e-112 | 328 |
| Msa0037170 | MtrunA17_Chr6g0483121 | 37.731 | 432 | 255 | 6 | 5 | 428 | 89 | 514 | 4.51e-96 | 298 |
| Msa0037170 | MtrunA17_Chr8g0392641 | 37.731 | 432 | 259 | 6 | 4 | 429 | 143 | 570 | 4.21e-91 | 287 |
| Msa0037170 | MtrunA17_Chr8g0380091 | 36.092 | 435 | 265 | 8 | 7 | 433 | 275 | 704 | 6.52e-91 | 290 |
| Msa0037170 | MtrunA17_Chr1g0204041 | 86.452 | 155 | 21 | 0 | 1 | 155 | 1 | 155 | 1.41e-90 | 272 |
| Msa0037170 | MtrunA17_Chr1g0200111 | 75.706 | 177 | 33 | 1 | 264 | 430 | 1 | 177 | 2.15e-86 | 261 |
| Msa0037170 | MtrunA17_Chr2g0318281 | 67.895 | 190 | 61 | 0 | 243 | 432 | 5 | 194 | 4.13e-83 | 255 |
| Msa0037170 | MtrunA17_Chr1g0156411 | 81.429 | 140 | 26 | 0 | 6 | 145 | 10 | 149 | 1.84e-78 | 240 |
| Msa0037170 | MtrunA17_Chr8g0340361 | 60.000 | 185 | 58 | 2 | 264 | 433 | 1 | 184 | 7.92e-65 | 206 |
| Msa0037170 | MtrunA17_Chr4g0026961 | 54.124 | 194 | 73 | 4 | 195 | 385 | 32 | 212 | 9.18e-58 | 189 |
| Msa0037170 | MtrunA17_Chr4g0026961 | 76.190 | 42 | 10 | 0 | 1 | 42 | 1 | 42 | 6.04e-13 | 68.2 |
| Msa0037170 | MtrunA17_Chr2g0298381 | 77.778 | 99 | 22 | 0 | 1 | 99 | 1 | 99 | 7.89e-48 | 159 |
| Msa0037170 | MtrunA17_Chr8g0341021 | 76.471 | 102 | 24 | 0 | 3 | 104 | 4 | 105 | 1.17e-47 | 159 |
| Msa0037170 | MtrunA17_Chr7g0259481 | 30.365 | 438 | 245 | 14 | 3 | 429 | 59 | 447 | 9.34e-46 | 164 |
| Msa0037170 | MtrunA17_Chr3g0116821 | 29.955 | 444 | 250 | 15 | 3 | 429 | 88 | 487 | 4.82e-41 | 152 |
| Msa0037170 | MtrunA17_Chr1g0211481 | 79.747 | 79 | 16 | 0 | 5 | 83 | 4 | 82 | 3.36e-36 | 129 |
| Msa0037170 | MtrunA17_Chr2g0319351 | 82.192 | 73 | 13 | 0 | 5 | 77 | 5 | 77 | 3.97e-35 | 125 |
| Msa0037170 | MtrunA17_Chr1g0200101 | 89.231 | 65 | 7 | 0 | 172 | 236 | 49 | 113 | 7.35e-35 | 125 |
| Msa0037170 | MtrunA17_Chr1g0200101 | 73.469 | 49 | 13 | 0 | 21 | 69 | 2 | 50 | 8.38e-17 | 76.3 |
| Msa0037170 | MtrunA17_Chr2g0287231 | 32.389 | 247 | 135 | 6 | 1 | 244 | 10 | 227 | 7.40e-31 | 119 |
| Msa0037170 | MtrunA17_Chr8g0341041 | 67.089 | 79 | 26 | 0 | 213 | 291 | 2 | 80 | 8.81e-28 | 108 |
| Msa0037170 | MtrunA17_Chr8g0341041 | 63.793 | 58 | 21 | 0 | 375 | 432 | 101 | 158 | 1.38e-17 | 80.1 |
| Msa0037170 | MtrunA17_Chr7g0261801 | 69.697 | 66 | 17 | 1 | 155 | 220 | 1 | 63 | 3.82e-24 | 95.9 |
| Msa0037170 | MtrunA17_Chr3g0130991 | 26.471 | 272 | 143 | 9 | 9 | 272 | 85 | 307 | 1.07e-12 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037170 | AT1G07920.1 | 95.078 | 447 | 21 | 1 | 1 | 447 | 1 | 446 | 0.0 | 880 |
| Msa0037170 | AT1G07940.4 | 95.078 | 447 | 21 | 1 | 1 | 447 | 1 | 446 | 0.0 | 880 |
| Msa0037170 | AT1G07940.1 | 95.078 | 447 | 21 | 1 | 1 | 447 | 1 | 446 | 0.0 | 880 |
| Msa0037170 | AT1G07940.2 | 95.078 | 447 | 21 | 1 | 1 | 447 | 1 | 446 | 0.0 | 880 |
| Msa0037170 | AT1G07940.3 | 95.078 | 447 | 21 | 1 | 1 | 447 | 1 | 446 | 0.0 | 880 |
| Msa0037170 | AT5G60390.3 | 95.078 | 447 | 21 | 1 | 1 | 447 | 1 | 446 | 0.0 | 880 |
| Msa0037170 | AT5G60390.1 | 95.078 | 447 | 21 | 1 | 1 | 447 | 1 | 446 | 0.0 | 880 |
| Msa0037170 | AT5G60390.2 | 95.078 | 447 | 21 | 1 | 1 | 447 | 1 | 446 | 0.0 | 880 |
| Msa0037170 | AT1G07930.1 | 95.078 | 447 | 21 | 1 | 1 | 447 | 1 | 446 | 0.0 | 880 |
| Msa0037170 | AT1G07930.2 | 98.824 | 255 | 3 | 0 | 1 | 255 | 1 | 255 | 0.0 | 530 |
| Msa0037170 | AT1G07930.2 | 86.325 | 117 | 15 | 1 | 331 | 447 | 254 | 369 | 1.37e-63 | 210 |
| Msa0037170 | AT1G18070.1 | 37.412 | 425 | 258 | 5 | 5 | 424 | 99 | 520 | 5.05e-93 | 291 |
| Msa0037170 | AT1G18070.2 | 37.412 | 425 | 258 | 5 | 5 | 424 | 99 | 520 | 5.05e-93 | 291 |
| Msa0037170 | AT1G18070.3 | 36.697 | 436 | 257 | 6 | 5 | 424 | 99 | 531 | 5.44e-90 | 283 |
| Msa0037170 | AT5G10630.1 | 35.831 | 427 | 262 | 7 | 7 | 426 | 239 | 660 | 6.98e-90 | 287 |
| Msa0037170 | AT5G10630.5 | 35.831 | 427 | 262 | 7 | 7 | 426 | 240 | 661 | 7.14e-90 | 287 |
| Msa0037170 | AT5G10630.2 | 35.831 | 427 | 262 | 7 | 7 | 426 | 240 | 661 | 7.14e-90 | 287 |
| Msa0037170 | AT5G10630.3 | 35.831 | 427 | 262 | 7 | 7 | 426 | 310 | 731 | 3.74e-89 | 286 |
| Msa0037170 | AT5G10630.4 | 35.831 | 427 | 262 | 7 | 7 | 426 | 315 | 736 | 4.33e-89 | 286 |
| Msa0037170 | AT1G35550.1 | 77.670 | 103 | 23 | 0 | 335 | 437 | 1 | 103 | 2.47e-52 | 171 |
| Msa0037170 | AT4G20360.1 | 30.137 | 438 | 257 | 10 | 3 | 429 | 75 | 474 | 7.00e-44 | 160 |
| Msa0037170 | AT4G20360.2 | 30.137 | 438 | 257 | 10 | 3 | 429 | 75 | 474 | 7.00e-44 | 160 |
| Msa0037170 | AT4G02930.1 | 30.296 | 439 | 245 | 15 | 3 | 429 | 63 | 452 | 8.38e-44 | 159 |
| Msa0037170 | AT2G31060.3 | 25.000 | 264 | 160 | 8 | 9 | 263 | 61 | 295 | 3.10e-12 | 69.3 |
| Msa0037170 | AT5G08650.2 | 26.667 | 270 | 145 | 10 | 9 | 272 | 88 | 310 | 2.68e-11 | 66.2 |
| Msa0037170 | AT5G08650.1 | 26.667 | 270 | 145 | 10 | 9 | 272 | 88 | 310 | 2.97e-11 | 66.2 |
| Msa0037170 | AT2G31060.2 | 24.615 | 260 | 162 | 7 | 9 | 263 | 61 | 291 | 4.35e-11 | 65.5 |
Find 183 sgRNAs with CRISPR-Local
Find 285 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACCATTCTTCAAGAATT+TGG | 0.066665 | 1_1:+66099335 | None:intergenic |
| ATCATAGTTATTACAATAAA+TGG | 0.259832 | 1_1:-66099089 | Msa0037170:three_prime_UTR |
| TGCTGGGGCATGGTTCTATA+TGG | 0.275303 | 1_1:-66098787 | Msa0037170:three_prime_UTR |
| CTCCTTCTCAATTTCCTTAC+CGG | 0.285465 | 1_1:+66099359 | None:intergenic |
| GCTCTCCTTGCTTTCACTCT+TGG | 0.289982 | 1_1:-66100159 | Msa0037170:CDS |
| GTCTACAAGATTGGAGGAAT+TGG | 0.315206 | 1_1:-66099750 | Msa0037170:CDS |
| GCCTCTTAGGCTCATTGATT+TGG | 0.315866 | 1_1:+66099808 | None:intergenic |
| TTATTACAATAAATGGTCTT+TGG | 0.319176 | 1_1:-66099082 | Msa0037170:three_prime_UTR |
| TGTCAAGAATGTTGCTGTTA+AGG | 0.325240 | 1_1:-66099574 | Msa0037170:CDS |
| TCACCATTCTTCAAGAATTT+GGG | 0.331757 | 1_1:+66099336 | None:intergenic |
| ATAGCCAACCTTCTTCAAAT+AGG | 0.332380 | 1_1:+66099944 | None:intergenic |
| AAGTTAGCAGCCTCCTTGGC+TGG | 0.333938 | 1_1:+66099510 | None:intergenic |
| ACCTCGTGAAGAAGGGAAAA+AGG | 0.344425 | 1_1:+66101879 | None:intergenic |
| CTTCTTCTTCAATGCTGACT+TGG | 0.345006 | 1_1:+66099149 | None:intergenic |
| CACATCAACATTGTGGTCAT+TGG | 0.354316 | 1_1:-66100549 | Msa0037170:CDS |
| GAGGTGTGGCAGTCAAGAAC+AGG | 0.357372 | 1_1:+66099432 | None:intergenic |
| ATTCCATTTGTTCCCATCTC+TGG | 0.368209 | 1_1:-66099909 | Msa0037170:CDS |
| GCTCTCACAGAGGCCCTTCC+TGG | 0.369900 | 1_1:-66099615 | Msa0037170:CDS |
| GTAAGCAAGCAGTAAGTTCC+AGG | 0.370590 | 1_1:-66098883 | Msa0037170:three_prime_UTR |
| CTCCTTGGCTGGGTCATCCT+TGG | 0.371873 | 1_1:+66099521 | None:intergenic |
| ATATCTACCCTTGGAGTACT+TGG | 0.380807 | 1_1:+66099992 | None:intergenic |
| TCACCATTGACATTGCTCTT+TGG | 0.386025 | 1_1:-66100356 | Msa0037170:CDS |
| GTCATTGGCCATGTCGACTC+TGG | 0.395247 | 1_1:-66100534 | Msa0037170:CDS |
| TGCGTCAAACTGTAGCTGTT+GGG | 0.401918 | 1_1:-66099221 | Msa0037170:CDS |
| CCTGTGGGGCGTGTTGAAAC+TGG | 0.405151 | 1_1:-66099720 | Msa0037170:CDS |
| GCAAAAGTGACAACCATTCC+AGG | 0.418006 | 1_1:+66099687 | None:intergenic |
| CTCATCATTGATTCCACTAC+TGG | 0.419293 | 1_1:-66100228 | Msa0037170:CDS |
| TATGGTTTAGGCAATATATC+AGG | 0.424066 | 1_1:-66098769 | Msa0037170:three_prime_UTR |
| ATGAATCACCCTGGCCAGAT+TGG | 0.425183 | 1_1:-66099468 | Msa0037170:CDS |
| TCATTCCTTGCTACTCGACT+AGG | 0.426624 | 1_1:-66101917 | Msa0037170:five_prime_UTR |
| CTTAATGAAATCCCTGTGTC+CGG | 0.429384 | 1_1:+66100290 | None:intergenic |
| GCCCCTCCGACTACCACTTC+AGG | 0.433104 | 1_1:-66099775 | Msa0037170:CDS |
| ACTAAGATTGATAGGCGTTC+CGG | 0.433848 | 1_1:-66099378 | Msa0037170:CDS |
| TGACAAGCTTAAGGCTGAAC+GGG | 0.436450 | 1_1:-66100388 | Msa0037170:CDS |
| AGGACTAATGGGTAAGGAAA+AGG | 0.440646 | 1_1:-66100574 | Msa0037170:exon |
| AGCGTTCATTCAAGTATGCC+TGG | 0.444655 | 1_1:-66100416 | Msa0037170:CDS |
| GGCTTGTCTGAAGGCCTCTT+AGG | 0.446650 | 1_1:+66099795 | None:intergenic |
| AAACCAGAGATGGGAACAAA+TGG | 0.449170 | 1_1:+66099906 | None:intergenic |
| GGTCTGCTTAAGTCCTCCAC+TGG | 0.451209 | 1_1:+66099170 | None:intergenic |
| GGGCATAGCAATTTCCAATC+TGG | 0.453952 | 1_1:+66099454 | None:intergenic |
| GGCATGGTTCTATATGGTTT+AGG | 0.454376 | 1_1:-66098781 | Msa0037170:three_prime_UTR |
| ACTTCAGTTGTCAGTCCAGT+AGG | 0.456008 | 1_1:+66099663 | None:intergenic |
| CTTCAGGATGTCTACAAGAT+TGG | 0.458119 | 1_1:-66099759 | Msa0037170:CDS |
| CTCGACCACCATGGGCTTGG+TGG | 0.461350 | 1_1:+66099290 | None:intergenic |
| ACCAAATCAATGAGCCTAAG+AGG | 0.463105 | 1_1:-66099809 | Msa0037170:CDS |
| CTGGGTCCTTGACAAGCTTA+AGG | 0.464518 | 1_1:-66100397 | Msa0037170:CDS |
| TGGGTCATCCTTGGAGTTTG+AGG | 0.465051 | 1_1:+66099530 | None:intergenic |
| CACAAACCTTGACTGGTACA+AGG | 0.466653 | 1_1:-66099856 | Msa0037170:CDS |
| GGGTTGTTACCTCGTGAAGA+AGG | 0.471526 | 1_1:+66101871 | None:intergenic |
| TAGGCTCATTGATTTGGTCA+AGG | 0.472707 | 1_1:+66099814 | None:intergenic |
| TTAATGAAATCCCTGTGTCC+GGG | 0.473933 | 1_1:+66100291 | None:intergenic |
| AGTCTCGACCACCATGGGCT+TGG | 0.475046 | 1_1:+66099287 | None:intergenic |
| AGGCTCATTGATTTGGTCAA+GGG | 0.475242 | 1_1:+66099815 | None:intergenic |
| TGTAAAGTTAGCAGCCTCCT+TGG | 0.477279 | 1_1:+66099506 | None:intergenic |
| TAGCAATTTCCAATCTGGCC+AGG | 0.481484 | 1_1:+66099459 | None:intergenic |
| AGCTTGTTACTAAGATTGAT+AGG | 0.481965 | 1_1:-66099386 | Msa0037170:CDS |
| ACAATCAGCTTGGGATGTTC+CGG | 0.483792 | 1_1:+66100257 | None:intergenic |
| GACGAGAAATAGAAATACTA+AGG | 0.487881 | 1_1:+66099058 | None:intergenic |
| TCATCCTATTTGAAGAAGGT+TGG | 0.491235 | 1_1:-66099948 | Msa0037170:CDS |
| CTTGTACCAGTCAAGGTTTG+TGG | 0.492698 | 1_1:+66099857 | None:intergenic |
| GAGAATAGAGAGGGACGGTA+GGG | 0.495192 | 1_1:+66101947 | None:intergenic |
| ATCTCCCTCAAAACCAGAGA+TGG | 0.496573 | 1_1:+66099896 | None:intergenic |
| GGGTTTATAAACTAGTACTC+TGG | 0.498858 | 1_1:+66101990 | None:intergenic |
| CATCAAGGCTGTGGAGAAGA+AGG | 0.499167 | 1_1:-66099196 | Msa0037170:CDS |
| CTGACCATCCTTAGAAATAC+CGG | 0.501461 | 1_1:+66100194 | None:intergenic |
| AGTTTCATCCTATTTGAAGA+AGG | 0.501588 | 1_1:-66099952 | Msa0037170:CDS |
| ATCATTGATTCCACTACTGG+TGG | 0.502099 | 1_1:-66100225 | Msa0037170:CDS |
| CTTCAGTTGTCAGTCCAGTA+GGG | 0.506099 | 1_1:+66099664 | None:intergenic |
| GTTGTGTCTAGTCAGAAACT+TGG | 0.507294 | 1_1:-66098911 | Msa0037170:three_prime_UTR |
| AATTTCATCATATCTACCCT+TGG | 0.508007 | 1_1:+66099983 | None:intergenic |
| AATGACAGTGCAGTAGTACT+TGG | 0.509426 | 1_1:+66100320 | None:intergenic |
| AGCAGGATGATCTATCTACC+TGG | 0.510712 | 1_1:-66099119 | Msa0037170:three_prime_UTR |
| CATTCCTTGCTACTCGACTA+GGG | 0.514565 | 1_1:-66101916 | Msa0037170:five_prime_UTR |
| TGAGAACGGCACAATCAGCT+TGG | 0.516820 | 1_1:+66100247 | None:intergenic |
| AGGAATTGGAACTGTGCCTG+TGG | 0.517140 | 1_1:-66099736 | Msa0037170:CDS |
| TGAGAATAGAGAGGGACGGT+AGG | 0.520249 | 1_1:+66101946 | None:intergenic |
| GAAACAGAGTCAGCAAGCCC+TGG | 0.522954 | 1_1:+66098865 | None:intergenic |
| GAAGAAGAAGTGAACCGAGC+AGG | 0.523086 | 1_1:-66099136 | Msa0037170:exon |
| CAGGATGTCTACAAGATTGG+AGG | 0.523217 | 1_1:-66099756 | Msa0037170:CDS |
| GAACAAAAGCTAAGAGATGA+AGG | 0.523844 | 1_1:+66098997 | None:intergenic |
| CTTAAGGCTGAACGGGAAAG+AGG | 0.523952 | 1_1:-66100381 | Msa0037170:CDS |
| GAGCCCAAATTCTTGAAGAA+TGG | 0.528480 | 1_1:-66099339 | Msa0037170:CDS |
| ATGCGTCAAACTGTAGCTGT+TGG | 0.528651 | 1_1:-66099222 | Msa0037170:CDS |
| TCCCACATTGTCACCAGGAA+GGG | 0.528721 | 1_1:+66099602 | None:intergenic |
| AGTCGGAGGGGCTTGTCTGA+AGG | 0.529275 | 1_1:+66099786 | None:intergenic |
| GAGAACGGCACAATCAGCTT+GGG | 0.529995 | 1_1:+66100248 | None:intergenic |
| GATTGATAGGCGTTCCGGTA+AGG | 0.530821 | 1_1:-66099373 | Msa0037170:CDS |
| CTTCCAAAGAGCAATGTCAA+TGG | 0.534369 | 1_1:+66100353 | None:intergenic |
| GGAATTGGAACTGTGCCTGT+GGG | 0.536194 | 1_1:-66099735 | Msa0037170:CDS |
| AGCAAACTTGACAGCAATGT+GGG | 0.541075 | 1_1:+66099410 | None:intergenic |
| TGTAGCTGTTGGGGTCATCA+AGG | 0.544261 | 1_1:-66099211 | Msa0037170:CDS |
| TGCACTGTCATTGATGCCCC+CGG | 0.544718 | 1_1:-66100309 | Msa0037170:CDS |
| AAATGATCGGTACTTTGCGC+AGG | 0.544963 | 1_1:+66098728 | None:intergenic |
| CACTTGATCTACAAGCTTGG+AGG | 0.545798 | 1_1:-66100492 | Msa0037170:CDS |
| GTCTGCTTAAGTCCTCCACT+GGG | 0.549538 | 1_1:+66099171 | None:intergenic |
| GAGAAAGTCTCGACCACCAT+GGG | 0.551044 | 1_1:+66099282 | None:intergenic |
| GGCTTCAAAACCACCAGTAG+TGG | 0.551737 | 1_1:+66100215 | None:intergenic |
| GGTCACTTGATCTACAAGCT+TGG | 0.555547 | 1_1:-66100495 | Msa0037170:CDS |
| TAAAATTTAGATAAAATGAT+CGG | 0.557307 | 1_1:+66098715 | None:intergenic |
| TCAAGGGCCTCAAGAAGGGT+TGG | 0.557590 | 1_1:+66099831 | None:intergenic |
| TTGGTCAAGGGCCTCAAGAA+GGG | 0.558003 | 1_1:+66099827 | None:intergenic |
| TTGGACCCTTGTACCAGTCA+AGG | 0.558366 | 1_1:+66099850 | None:intergenic |
| AAGCAAGGAGAGCATGTTCA+CGG | 0.559179 | 1_1:+66100169 | None:intergenic |
| TCATTGGCCATGTCGACTCT+GGG | 0.559180 | 1_1:-66100533 | Msa0037170:CDS |
| AGCGCTCCACAAACCTTGAC+TGG | 0.559246 | 1_1:-66099863 | Msa0037170:CDS |
| AGGTGTGGCAGTCAAGAACA+GGG | 0.559985 | 1_1:+66099433 | None:intergenic |
| ATAACTATGATATGCTTCCC+AGG | 0.560332 | 1_1:+66099101 | None:intergenic |
| TTTGGTCAAGGGCCTCAAGA+AGG | 0.560467 | 1_1:+66099826 | None:intergenic |
| TTCTTGAAGAATGGTGATGC+TGG | 0.561159 | 1_1:-66099330 | Msa0037170:CDS |
| AGTTAGCAGCCTCCTTGGCT+GGG | 0.563218 | 1_1:+66099511 | None:intergenic |
| GAAGCCGGTATTTCTAAGGA+TGG | 0.564413 | 1_1:-66100198 | Msa0037170:CDS |
| TCTGGGAAATCAACCACCAC+TGG | 0.564990 | 1_1:-66100516 | Msa0037170:CDS |
| TCGACCACCATGGGCTTGGT+GGG | 0.567383 | 1_1:+66099291 | None:intergenic |
| ACAAACCTTGACTGGTACAA+GGG | 0.567625 | 1_1:-66099855 | Msa0037170:CDS |
| GGTTGTTACCTCGTGAAGAA+GGG | 0.568985 | 1_1:+66101872 | None:intergenic |
| TAATGAAATCCCTGTGTCCG+GGG | 0.570266 | 1_1:+66100292 | None:intergenic |
| TTCATTAAGAACATGATCAC+CGG | 0.572337 | 1_1:-66100276 | Msa0037170:CDS |
| AGCAAGGAGAGCATGTTCAC+GGG | 0.572470 | 1_1:+66100170 | None:intergenic |
| CTTAAGCTTGTCAAGGACCC+AGG | 0.575518 | 1_1:+66100398 | None:intergenic |
| ATCCTGAAGTGGTAGTCGGA+GGG | 0.576252 | 1_1:+66099773 | None:intergenic |
| CCAGTTTCAACACGCCCCAC+AGG | 0.580692 | 1_1:+66099720 | None:intergenic |
| TATCTACCCTTGGAGTACTT+GGG | 0.580849 | 1_1:+66099993 | None:intergenic |
| GCGTCAAACTGTAGCTGTTG+GGG | 0.581681 | 1_1:-66099220 | Msa0037170:CDS |
| ATCCCACATTGTCACCAGGA+AGG | 0.585536 | 1_1:+66099601 | None:intergenic |
| GGCCCTTCCTGGTGACAATG+TGG | 0.586985 | 1_1:-66099604 | Msa0037170:CDS |
| TTGATTTCCCAGAGTCGACA+TGG | 0.588973 | 1_1:+66100526 | None:intergenic |
| CTGTTAAGGATCTCAAGCGT+GGG | 0.589274 | 1_1:-66099560 | Msa0037170:CDS |
| TTCTCTGAATATCCTCCACT+CGG | 0.591172 | 1_1:-66099264 | Msa0037170:CDS |
| GCCCTTCCTGGTGACAATGT+GGG | 0.592402 | 1_1:-66099603 | Msa0037170:CDS |
| TTGACAAGCTTAAGGCTGAA+CGG | 0.594016 | 1_1:-66100389 | Msa0037170:CDS |
| TGTTGGGGTCATCAAGGCTG+TGG | 0.596509 | 1_1:-66099205 | Msa0037170:CDS |
| TGGTGTCATAAAACCTGGAA+TGG | 0.598505 | 1_1:-66099700 | Msa0037170:CDS |
| AGCAATTTCCAATCTGGCCA+GGG | 0.598647 | 1_1:+66099460 | None:intergenic |
| TAGATATGATGAAATTGTGA+AGG | 0.599770 | 1_1:-66099976 | Msa0037170:CDS |
| GCATGTCTCTAACAGCAAAA+CGG | 0.600985 | 1_1:+66099241 | None:intergenic |
| CTCCAAGGATGACCCAGCCA+AGG | 0.602045 | 1_1:-66099523 | Msa0037170:CDS |
| GCGTTCATTCAAGTATGCCT+GGG | 0.605879 | 1_1:-66100415 | Msa0037170:CDS |
| TCTCCCTCAAAACCAGAGAT+GGG | 0.607478 | 1_1:+66099897 | None:intergenic |
| TCCTGAAGTGGTAGTCGGAG+GGG | 0.608492 | 1_1:+66099774 | None:intergenic |
| GATGATTCCCACCAAGCCCA+TGG | 0.611182 | 1_1:-66099298 | Msa0037170:CDS |
| TAAGCAAGCAGTAAGTTCCA+GGG | 0.611817 | 1_1:-66098882 | Msa0037170:three_prime_UTR |
| TACTACACCCAAGTACTCCA+AGG | 0.613862 | 1_1:-66100000 | Msa0037170:CDS |
| GTTCAGCCTTAAGCTTGTCA+AGG | 0.618150 | 1_1:+66100391 | None:intergenic |
| CAAGGGTCCAACCCTTCTTG+AGG | 0.620566 | 1_1:-66099838 | Msa0037170:CDS |
| TCACACCAAGAGTGAAAGCA+AGG | 0.621193 | 1_1:+66100154 | None:intergenic |
| ATCTTGTAGACATCCTGAAG+TGG | 0.621388 | 1_1:+66099762 | None:intergenic |
| GCTGTTAAGGATCTCAAGCG+TGG | 0.622485 | 1_1:-66099561 | Msa0037170:CDS |
| TTCCGGTAAGGAAATTGAGA+AGG | 0.622677 | 1_1:-66099361 | Msa0037170:CDS |
| TTCAGTTGTCAGTCCAGTAG+GGG | 0.622733 | 1_1:+66099665 | None:intergenic |
| GAAACTGGTGTCATAAAACC+TGG | 0.623591 | 1_1:-66099705 | Msa0037170:CDS |
| GACAACTGAAGTCAAGTCTG+TGG | 0.624055 | 1_1:-66099652 | Msa0037170:CDS |
| ACAGCAAAACGGCCGAGTGG+AGG | 0.624787 | 1_1:+66099252 | None:intergenic |
| GCAGGATGATCTATCTACCT+GGG | 0.625090 | 1_1:-66099118 | Msa0037170:three_prime_UTR |
| TTGACAAGCGTGTCATCGAG+AGG | 0.625348 | 1_1:-66100467 | Msa0037170:CDS |
| GTATGTTGCCTCAAACTCCA+AGG | 0.633897 | 1_1:-66099538 | Msa0037170:CDS |
| CATCCTGAAGTGGTAGTCGG+AGG | 0.637451 | 1_1:+66099772 | None:intergenic |
| AGACATCCTGAAGTGGTAGT+CGG | 0.638051 | 1_1:+66099769 | None:intergenic |
| CAGCAAACTTGACAGCAATG+TGG | 0.638328 | 1_1:+66099409 | None:intergenic |
| AGAACTGGGTTCTAGATCGA+CGG | 0.639454 | 1_1:-66098972 | Msa0037170:three_prime_UTR |
| AAGCTTAAACATCACACCAA+AGG | 0.639799 | 1_1:+66098811 | None:intergenic |
| GGTAGATAGATCATCCTGCT+CGG | 0.643375 | 1_1:+66099122 | None:intergenic |
| GAATTGGAACTGTGCCTGTG+GGG | 0.644316 | 1_1:-66099734 | Msa0037170:CDS |
| AGTGGAATCAATGATGAGAA+CGG | 0.644693 | 1_1:+66100233 | None:intergenic |
| TGACAGCAATGTGGGAGGTG+TGG | 0.650950 | 1_1:+66099418 | None:intergenic |
| GAAACCCTAGTCGAGTAGCA+AGG | 0.651284 | 1_1:+66101912 | None:intergenic |
| AGAGAAAGTCTCGACCACCA+TGG | 0.654922 | 1_1:+66099281 | None:intergenic |
| TTAAATCCCACATTGTCACC+AGG | 0.657091 | 1_1:+66099597 | None:intergenic |
| AATGATCTGCTGTTGCAACA+AGG | 0.659392 | 1_1:-66100127 | Msa0037170:intron |
| CAAGGATGACCCAGCCAAGG+AGG | 0.659665 | 1_1:-66099520 | Msa0037170:CDS |
| AATGAAATCCCTGTGTCCGG+GGG | 0.661737 | 1_1:+66100293 | None:intergenic |
| GAGAAGAAGGATCCCAGTGG+AGG | 0.667988 | 1_1:-66099183 | Msa0037170:CDS |
| AAAGGTTCACATCAACATTG+TGG | 0.675059 | 1_1:-66100556 | Msa0037170:CDS |
| ACTACACCCAAGTACTCCAA+GGG | 0.678033 | 1_1:-66099999 | Msa0037170:CDS |
| CTTGTAGATCAAGTGACCAG+TGG | 0.682705 | 1_1:+66100500 | None:intergenic |
| CTAACAGCAAAACGGCCGAG+TGG | 0.692072 | 1_1:+66099249 | None:intergenic |
| AAACTTGACAGCAATGTGGG+AGG | 0.695398 | 1_1:+66099413 | None:intergenic |
| GTAGATCAAGTGACCAGTGG+TGG | 0.699002 | 1_1:+66100503 | None:intergenic |
| GTGATCATAATGAATCACCC+TGG | 0.699056 | 1_1:-66099477 | Msa0037170:CDS |
| GGTGTGGCAGTCAAGAACAG+GGG | 0.711459 | 1_1:+66099434 | None:intergenic |
| GATTCCCACCAAGCCCATGG+TGG | 0.723849 | 1_1:-66099295 | Msa0037170:CDS |
| ACTGGGTTCTAGATCGACGG+TGG | 0.727144 | 1_1:-66098969 | Msa0037170:three_prime_UTR |
| GTGGAGAAGAAGGATCCCAG+TGG | 0.734762 | 1_1:-66099186 | Msa0037170:CDS |
| GCATCATGAAGCTCTCACAG+AGG | 0.758446 | 1_1:-66099625 | Msa0037170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCATTTTTTTTTTACTT+TGG | - | chr1_1:66099806-66099825 | Msa0037170:CDS | 10.0% |
| !!! | ATTTAATTTTTTTCTTTCTT+TGG | - | chr1_1:66100054-66100073 | Msa0037170:intron | 10.0% |
| !!! | TTTAATTTTTTTCTTTCTTT+GGG | - | chr1_1:66100055-66100074 | Msa0037170:intron | 10.0% |
| !! | TAAAATTTAGATAAAATGAT+CGG | + | chr1_1:66101995-66102014 | None:intergenic | 10.0% |
| !!! | TATGAAATTTAGTTTCAATT+TGG | - | chr1_1:66099278-66099297 | Msa0037170:CDS | 15.0% |
| !!! | AATCCTTTATGTTTTTAAAT+AGG | - | chr1_1:66099372-66099391 | Msa0037170:CDS | 15.0% |
| !!! | TTAATTTTTTTCTTTCTTTG+GGG | - | chr1_1:66100056-66100075 | Msa0037170:intron | 15.0% |
| !! | ATCTTGAATTCATTTATTTA+TGG | - | chr1_1:66100651-66100670 | Msa0037170:intron | 15.0% |
| !! | ATCATAGTTATTACAATAAA+TGG | - | chr1_1:66101618-66101637 | Msa0037170:intron | 15.0% |
| !!! | TGTTATATACTTCTTTTGTT+TGG | - | chr1_1:66099166-66099185 | Msa0037170:CDS | 20.0% |
| !! | TAAATTTCATAACGTAAAAC+AGG | + | chr1_1:66099269-66099288 | None:intergenic | 20.0% |
| !! | ATTCAGAATTACAATTAAAC+AGG | + | chr1_1:66099338-66099357 | None:intergenic | 20.0% |
| !! | TTATTACAATAAATGGTCTT+TGG | - | chr1_1:66101625-66101644 | Msa0037170:intron | 20.0% |
| !! | TTTTAATATAAGGGTTTCAG+GGG | + | chr1_1:66098740-66098759 | None:intergenic | 25.0% |
| !!! | GTTTTAATATAAGGGTTTCA+GGG | + | chr1_1:66098741-66098760 | None:intergenic | 25.0% |
| !!! | AAACGAAATTGATGGATTTA+GGG | + | chr1_1:66098859-66098878 | None:intergenic | 25.0% |
| ! | CATATCATCAATTCATTCAT+AGG | - | chr1_1:66098901-66098920 | Msa0037170:three_prime_UTR | 25.0% |
| ! | CTGATAAATAAAAGAACGAT+TGG | + | chr1_1:66099025-66099044 | None:intergenic | 25.0% |
| ! | ACGTAAGGATGATATAATAA+TGG | + | chr1_1:66099124-66099143 | None:intergenic | 25.0% |
| !!! | CTGTTTTAGTGTAATTACAT+AGG | - | chr1_1:66099226-66099245 | Msa0037170:CDS | 25.0% |
| !! | TACATAGGATCATTTGAAAT+TGG | - | chr1_1:66099241-66099260 | Msa0037170:CDS | 25.0% |
| !! | TAAAGGATTATCACACTTTT+TGG | + | chr1_1:66099361-66099380 | None:intergenic | 25.0% |
| ! | CCACCTATTTAAAAACATAA+AGG | + | chr1_1:66099378-66099397 | None:intergenic | 25.0% |
| !!! | CCTTTATGTTTTTAAATAGG+TGG | - | chr1_1:66099375-66099394 | Msa0037170:CDS | 25.0% |
| !!! | TTGTGAAGGTTTTAACTTTT+TGG | - | chr1_1:66099408-66099427 | Msa0037170:CDS | 25.0% |
| ! | AGTTAGTAGTTATTTGTTTC+TGG | - | chr1_1:66099499-66099518 | Msa0037170:CDS | 25.0% |
| !! | TTGTTCTCCTATTTTATTCT+TGG | - | chr1_1:66099567-66099586 | Msa0037170:CDS | 25.0% |
| ! | TCAGTAACCAAGAATAAAAT+AGG | + | chr1_1:66099577-66099596 | None:intergenic | 25.0% |
| ! | TCTGATCTTATCTATTAATC+AGG | + | chr1_1:66099644-66099663 | None:intergenic | 25.0% |
| ! | CAAAATGTTATCCCATAAAT+GGG | + | chr1_1:66099942-66099961 | None:intergenic | 25.0% |
| ! | ACAAAATGTTATCCCATAAA+TGG | + | chr1_1:66099943-66099962 | None:intergenic | 25.0% |
| ! | GAATTGTTAAATCCTTTAGT+CGG | - | chr1_1:66100008-66100027 | Msa0037170:CDS | 25.0% |
| ! | TAGATATGATGAAATTGTGA+AGG | - | chr1_1:66100731-66100750 | Msa0037170:intron | 25.0% |
| !!! | TATTTTTGTGTTTGTTCCTT+TGG | - | chr1_1:66101880-66101899 | Msa0037170:intron | 25.0% |
| !! | GGTTTTAATATAAGGGTTTC+AGG | + | chr1_1:66098742-66098761 | None:intergenic | 30.0% |
| !! | ACGGTAGGGTTTTAATATAA+GGG | + | chr1_1:66098749-66098768 | None:intergenic | 30.0% |
| !! | GAGAATTTTGAGAATAGAGA+GGG | + | chr1_1:66098772-66098791 | None:intergenic | 30.0% |
| !! | TGAGAATTTTGAGAATAGAG+AGG | + | chr1_1:66098773-66098792 | None:intergenic | 30.0% |
| !! | GAAACGAAATTGATGGATTT+AGG | + | chr1_1:66098860-66098879 | None:intergenic | 30.0% |
| TCGATAAGAAACGAAATTGA+TGG | + | chr1_1:66098867-66098886 | None:intergenic | 30.0% | |
| !! | TTTTATTTATCAGTCATCGC+TGG | - | chr1_1:66099032-66099051 | Msa0037170:three_prime_UTR | 30.0% |
| AGGATGATATAATAATGGCA+TGG | + | chr1_1:66099119-66099138 | None:intergenic | 30.0% | |
| CTCAAAAAAAGAACAACGTA+AGG | + | chr1_1:66099139-66099158 | None:intergenic | 30.0% | |
| !! | TTCTTTTGTTTGGTATTCCT+TGG | - | chr1_1:66099176-66099195 | Msa0037170:CDS | 30.0% |
| TTGCAAAAAAACAGAATCCA+AGG | + | chr1_1:66099196-66099215 | None:intergenic | 30.0% | |
| ATGAAATATGATGTTTCAGC+AGG | + | chr1_1:66099527-66099546 | None:intergenic | 30.0% | |
| AAAAAAAAAAAGGGACTCCA+CGG | + | chr1_1:66099737-66099756 | None:intergenic | 30.0% | |
| ! | TGCTCATGTATTATTTTCCT+TGG | - | chr1_1:66100082-66100101 | Msa0037170:intron | 30.0% |
| ! | TTTGTGGTTTTCAGCTTTTA+AGG | - | chr1_1:66100113-66100132 | Msa0037170:intron | 30.0% |
| !! | TTTCAGCTTTTAAGGACTAA+TGG | - | chr1_1:66100121-66100140 | Msa0037170:intron | 30.0% |
| !! | TTCAGCTTTTAAGGACTAAT+GGG | - | chr1_1:66100122-66100141 | Msa0037170:intron | 30.0% |
| TTCATTAAGAACATGATCAC+CGG | - | chr1_1:66100431-66100450 | Msa0037170:CDS | 30.0% | |
| AATTTCATCATATCTACCCT+TGG | + | chr1_1:66100727-66100746 | None:intergenic | 30.0% | |
| AGTTTCATCCTATTTGAAGA+AGG | - | chr1_1:66100755-66100774 | Msa0037170:intron | 30.0% | |
| ! | GAACAAATGGAATTTTGTCT+GGG | + | chr1_1:66100791-66100810 | None:intergenic | 30.0% |
| !! | AGCTTGTTACTAAGATTGAT+AGG | - | chr1_1:66101321-66101340 | Msa0037170:intron | 30.0% |
| TCACCATTCTTCAAGAATTT+GGG | + | chr1_1:66101374-66101393 | None:intergenic | 30.0% | |
| ATCACCATTCTTCAAGAATT+TGG | + | chr1_1:66101375-66101394 | None:intergenic | 30.0% | |
| GACGAGAAATAGAAATACTA+AGG | + | chr1_1:66101652-66101671 | None:intergenic | 30.0% | |
| TATGGTTTAGGCAATATATC+AGG | - | chr1_1:66101938-66101957 | Msa0037170:five_prime_UTR | 30.0% | |
| GGGTTTATAAACTAGTACTC+TGG | + | chr1_1:66098720-66098739 | None:intergenic | 35.0% | |
| !! | GACGGTAGGGTTTTAATATA+AGG | + | chr1_1:66098750-66098769 | None:intergenic | 35.0% |
| !! | ATTTTGAGAATAGAGAGGGA+CGG | + | chr1_1:66098768-66098787 | None:intergenic | 35.0% |
| !! | GTGGTTTTACTTTGTTGTGA+AGG | - | chr1_1:66099394-66099413 | Msa0037170:CDS | 35.0% |
| ACAACAACAATATGTCAGCA+GGG | + | chr1_1:66099551-66099570 | None:intergenic | 35.0% | |
| AACAACAACAATATGTCAGC+AGG | + | chr1_1:66099552-66099571 | None:intergenic | 35.0% | |
| GATTCTTCAGCAGATATAAC+AGG | + | chr1_1:66099611-66099630 | None:intergenic | 35.0% | |
| ! | CATCAGTCTTGTAAAACTGA+AGG | - | chr1_1:66099866-66099885 | Msa0037170:CDS | 35.0% |
| ATTGTTGCCAAACCCATTTA+TGG | - | chr1_1:66099927-66099946 | Msa0037170:CDS | 35.0% | |
| TTGTTGCCAAACCCATTTAT+GGG | - | chr1_1:66099928-66099947 | Msa0037170:CDS | 35.0% | |
| ! | TGTTATCCCATAAATGGGTT+TGG | + | chr1_1:66099937-66099956 | None:intergenic | 35.0% |
| !! | CTTTTAAGGACTAATGGGTA+AGG | - | chr1_1:66100127-66100146 | Msa0037170:intron | 35.0% |
| AAAGGTTCACATCAACATTG+TGG | - | chr1_1:66100151-66100170 | Msa0037170:CDS | 35.0% | |
| AGTGGAATCAATGATGAGAA+CGG | + | chr1_1:66100477-66100496 | None:intergenic | 35.0% | |
| !!! | TTTTGAAGCCGGTATTTCTA+AGG | - | chr1_1:66100505-66100524 | Msa0037170:CDS | 35.0% |
| ATCCATCTGTTCAAGATAGA+TGG | + | chr1_1:66100685-66100704 | None:intergenic | 35.0% | |
| TCATCCTATTTGAAGAAGGT+TGG | - | chr1_1:66100759-66100778 | Msa0037170:intron | 35.0% | |
| ATAGCCAACCTTCTTCAAAT+AGG | + | chr1_1:66100766-66100785 | None:intergenic | 35.0% | |
| ! | GGAACAAATGGAATTTTGTC+TGG | + | chr1_1:66100792-66100811 | None:intergenic | 35.0% |
| ! | TGTCAAGAATGTTGCTGTTA+AGG | - | chr1_1:66101133-66101152 | Msa0037170:intron | 35.0% |
| ATAACTATGATATGCTTCCC+AGG | + | chr1_1:66101609-66101628 | None:intergenic | 35.0% | |
| GAACAAAAGCTAAGAGATGA+AGG | + | chr1_1:66101713-66101732 | None:intergenic | 35.0% | |
| !! | TTAGCTTTTGTTCTCAGAAC+TGG | - | chr1_1:66101720-66101739 | Msa0037170:intron | 35.0% |
| ! | TAGCTTTTGTTCTCAGAACT+GGG | - | chr1_1:66101721-66101740 | Msa0037170:intron | 35.0% |
| AAGCTTAAACATCACACCAA+AGG | + | chr1_1:66101899-66101918 | None:intergenic | 35.0% | |
| ! | TGTGATGTTTAAGCTTTTGC+TGG | - | chr1_1:66101903-66101922 | Msa0037170:five_prime_UTR | 35.0% |
| ! | GTGATGTTTAAGCTTTTGCT+GGG | - | chr1_1:66101904-66101923 | Msa0037170:five_prime_UTR | 35.0% |
| ! | TGATGTTTAAGCTTTTGCTG+GGG | - | chr1_1:66101905-66101924 | Msa0037170:five_prime_UTR | 35.0% |
| CAACAACAATATGTCAGCAG+GGG | + | chr1_1:66099550-66099569 | None:intergenic | 40.0% | |
| TACTCTACCACCGAGTTAAA+GGG | + | chr1_1:66099711-66099730 | None:intergenic | 40.0% | |
| TTACTCTACCACCGAGTTAA+AGG | + | chr1_1:66099712-66099731 | None:intergenic | 40.0% | |
| ! | TTCCTTGGCAGATCTTTTTG+TGG | - | chr1_1:66100097-66100116 | Msa0037170:intron | 40.0% |
| AACCACAAAAAGATCTGCCA+AGG | + | chr1_1:66100102-66100121 | None:intergenic | 40.0% | |
| ! | AGGACTAATGGGTAAGGAAA+AGG | - | chr1_1:66100133-66100152 | Msa0037170:CDS | 40.0% |
| CACATCAACATTGTGGTCAT+TGG | - | chr1_1:66100158-66100177 | Msa0037170:CDS | 40.0% | |
| TTGACAAGCTTAAGGCTGAA+CGG | - | chr1_1:66100318-66100337 | Msa0037170:CDS | 40.0% | |
| TCACCATTGACATTGCTCTT+TGG | - | chr1_1:66100351-66100370 | Msa0037170:CDS | 40.0% | |
| CTTCCAAAGAGCAATGTCAA+TGG | + | chr1_1:66100357-66100376 | None:intergenic | 40.0% | |
| AATGACAGTGCAGTAGTACT+TGG | + | chr1_1:66100390-66100409 | None:intergenic | 40.0% | |
| TTAATGAAATCCCTGTGTCC+GGG | + | chr1_1:66100419-66100438 | None:intergenic | 40.0% | |
| CTTAATGAAATCCCTGTGTC+CGG | + | chr1_1:66100420-66100439 | None:intergenic | 40.0% | |
| !! | CTCATCATTGATTCCACTAC+TGG | - | chr1_1:66100479-66100498 | Msa0037170:CDS | 40.0% |
| !! | ATCATTGATTCCACTACTGG+TGG | - | chr1_1:66100482-66100501 | Msa0037170:CDS | 40.0% |
| CTGACCATCCTTAGAAATAC+CGG | + | chr1_1:66100516-66100535 | None:intergenic | 40.0% | |
| AATGATCTGCTGTTGCAACA+AGG | - | chr1_1:66100580-66100599 | Msa0037170:exon | 40.0% | |
| TGCCATCTATCTTGAACAGA+TGG | - | chr1_1:66100680-66100699 | Msa0037170:intron | 40.0% | |
| ! | TATCTACCCTTGGAGTACTT+GGG | + | chr1_1:66100717-66100736 | None:intergenic | 40.0% |
| ! | ATATCTACCCTTGGAGTACT+TGG | + | chr1_1:66100718-66100737 | None:intergenic | 40.0% |
| ATTCCATTTGTTCCCATCTC+TGG | - | chr1_1:66100798-66100817 | Msa0037170:intron | 40.0% | |
| AAACCAGAGATGGGAACAAA+TGG | + | chr1_1:66100804-66100823 | None:intergenic | 40.0% | |
| ACAAACCTTGACTGGTACAA+GGG | - | chr1_1:66100852-66100871 | Msa0037170:intron | 40.0% | |
| !! | AGGCTCATTGATTTGGTCAA+GGG | + | chr1_1:66100895-66100914 | None:intergenic | 40.0% |
| !! | TAGGCTCATTGATTTGGTCA+AGG | + | chr1_1:66100896-66100915 | None:intergenic | 40.0% |
| ACCAAATCAATGAGCCTAAG+AGG | - | chr1_1:66100898-66100917 | Msa0037170:intron | 40.0% | |
| ATCTTGTAGACATCCTGAAG+TGG | + | chr1_1:66100948-66100967 | None:intergenic | 40.0% | |
| CTTCAGGATGTCTACAAGAT+TGG | - | chr1_1:66100948-66100967 | Msa0037170:intron | 40.0% | |
| GTCTACAAGATTGGAGGAAT+TGG | - | chr1_1:66100957-66100976 | Msa0037170:intron | 40.0% | |
| !! | GAAACTGGTGTCATAAAACC+TGG | - | chr1_1:66101002-66101021 | Msa0037170:intron | 40.0% |
| !! | TGGTGTCATAAAACCTGGAA+TGG | - | chr1_1:66101007-66101026 | Msa0037170:intron | 40.0% |
| TTAAATCCCACATTGTCACC+AGG | + | chr1_1:66101113-66101132 | None:intergenic | 40.0% | |
| GTGATCATAATGAATCACCC+TGG | - | chr1_1:66101230-66101249 | Msa0037170:intron | 40.0% | |
| AGCAAACTTGACAGCAATGT+GGG | + | chr1_1:66101300-66101319 | None:intergenic | 40.0% | |
| ACTAAGATTGATAGGCGTTC+CGG | - | chr1_1:66101329-66101348 | Msa0037170:intron | 40.0% | |
| TTCCGGTAAGGAAATTGAGA+AGG | - | chr1_1:66101346-66101365 | Msa0037170:intron | 40.0% | |
| CTCCTTCTCAATTTCCTTAC+CGG | + | chr1_1:66101351-66101370 | None:intergenic | 40.0% | |
| GAGCCCAAATTCTTGAAGAA+TGG | - | chr1_1:66101368-66101387 | Msa0037170:intron | 40.0% | |
| ! | TTCTTGAAGAATGGTGATGC+TGG | - | chr1_1:66101377-66101396 | Msa0037170:intron | 40.0% |
| TTCTCTGAATATCCTCCACT+CGG | - | chr1_1:66101443-66101462 | Msa0037170:intron | 40.0% | |
| GCATGTCTCTAACAGCAAAA+CGG | + | chr1_1:66101469-66101488 | None:intergenic | 40.0% | |
| ! | CTTCTTCTTCAATGCTGACT+TGG | + | chr1_1:66101561-66101580 | None:intergenic | 40.0% |
| GTTGTGTCTAGTCAGAAACT+TGG | - | chr1_1:66101796-66101815 | Msa0037170:intron | 40.0% | |
| TAAGCAAGCAGTAAGTTCCA+GGG | - | chr1_1:66101825-66101844 | Msa0037170:intron | 40.0% | |
| ! | GGCATGGTTCTATATGGTTT+AGG | - | chr1_1:66101926-66101945 | Msa0037170:five_prime_UTR | 40.0% |
| TCATTCCTTGCTACTCGACT+AGG | - | chr1_1:66098790-66098809 | Msa0037170:three_prime_UTR | 45.0% | |
| CATTCCTTGCTACTCGACTA+GGG | - | chr1_1:66098791-66098810 | Msa0037170:three_prime_UTR | 45.0% | |
| ACCTCGTGAAGAAGGGAAAA+AGG | + | chr1_1:66098831-66098850 | None:intergenic | 45.0% | |
| GGTTGTTACCTCGTGAAGAA+GGG | + | chr1_1:66098838-66098857 | None:intergenic | 45.0% | |
| !!! | TCAGTCATCGCTGGTTTTGA+AGG | - | chr1_1:66099041-66099060 | Msa0037170:three_prime_UTR | 45.0% |
| GACACACACATATGCTTGTC+CGG | - | chr1_1:66099667-66099686 | Msa0037170:CDS | 45.0% | |
| ACACACACATATGCTTGTCC+GGG | - | chr1_1:66099668-66099687 | Msa0037170:CDS | 45.0% | |
| TCAGATGGAGCCCTTTAACT+CGG | - | chr1_1:66099698-66099717 | Msa0037170:CDS | 45.0% | |
| AACTTGCCCTTATAGCTCAG+TGG | - | chr1_1:66099838-66099857 | Msa0037170:CDS | 45.0% | |
| GCTCTACCACTGAGCTATAA+GGG | + | chr1_1:66099847-66099866 | None:intergenic | 45.0% | |
| TGCTCTACCACTGAGCTATA+AGG | + | chr1_1:66099848-66099867 | None:intergenic | 45.0% | |
| ! | GTCAACAACACACCGACTAA+AGG | + | chr1_1:66100023-66100042 | None:intergenic | 45.0% |
| ! | TTAGTCGGTGTGTTGTTGAC+AGG | - | chr1_1:66100023-66100042 | Msa0037170:intron | 45.0% |
| TTGATTTCCCAGAGTCGACA+TGG | + | chr1_1:66100184-66100203 | None:intergenic | 45.0% | |
| CTTGTAGATCAAGTGACCAG+TGG | + | chr1_1:66100210-66100229 | None:intergenic | 45.0% | |
| GGTCACTTGATCTACAAGCT+TGG | - | chr1_1:66100212-66100231 | Msa0037170:CDS | 45.0% | |
| CACTTGATCTACAAGCTTGG+AGG | - | chr1_1:66100215-66100234 | Msa0037170:CDS | 45.0% | |
| AGCGTTCATTCAAGTATGCC+TGG | - | chr1_1:66100291-66100310 | Msa0037170:CDS | 45.0% | |
| GCGTTCATTCAAGTATGCCT+GGG | - | chr1_1:66100292-66100311 | Msa0037170:CDS | 45.0% | |
| GTTCAGCCTTAAGCTTGTCA+AGG | + | chr1_1:66100319-66100338 | None:intergenic | 45.0% | |
| TGACAAGCTTAAGGCTGAAC+GGG | - | chr1_1:66100319-66100338 | Msa0037170:CDS | 45.0% | |
| TAATGAAATCCCTGTGTCCG+GGG | + | chr1_1:66100418-66100437 | None:intergenic | 45.0% | |
| ACAATCAGCTTGGGATGTTC+CGG | + | chr1_1:66100453-66100472 | None:intergenic | 45.0% | |
| !!! | ACTACTGGTGGTTTTGAAGC+CGG | - | chr1_1:66100494-66100513 | Msa0037170:CDS | 45.0% |
| ! | GAAGCCGGTATTTCTAAGGA+TGG | - | chr1_1:66100509-66100528 | Msa0037170:CDS | 45.0% |
| ! | AAGCAAGGAGAGCATGTTCA+CGG | + | chr1_1:66100541-66100560 | None:intergenic | 45.0% |
| TCACACCAAGAGTGAAAGCA+AGG | + | chr1_1:66100556-66100575 | None:intergenic | 45.0% | |
| TACTACACCCAAGTACTCCA+AGG | - | chr1_1:66100707-66100726 | Msa0037170:intron | 45.0% | |
| ACTACACCCAAGTACTCCAA+GGG | - | chr1_1:66100708-66100727 | Msa0037170:intron | 45.0% | |
| !!! | TGTTCCCATCTCTGGTTTTG+AGG | - | chr1_1:66100806-66100825 | Msa0037170:intron | 45.0% |
| !!! | GTTCCCATCTCTGGTTTTGA+GGG | - | chr1_1:66100807-66100826 | Msa0037170:intron | 45.0% |
| TCTCCCTCAAAACCAGAGAT+GGG | + | chr1_1:66100813-66100832 | None:intergenic | 45.0% | |
| ATCTCCCTCAAAACCAGAGA+TGG | + | chr1_1:66100814-66100833 | None:intergenic | 45.0% | |
| CTTGTACCAGTCAAGGTTTG+TGG | + | chr1_1:66100853-66100872 | None:intergenic | 45.0% | |
| CACAAACCTTGACTGGTACA+AGG | - | chr1_1:66100851-66100870 | Msa0037170:intron | 45.0% | |
| ! | GCCTCTTAGGCTCATTGATT+TGG | + | chr1_1:66100902-66100921 | None:intergenic | 45.0% |
| AGACATCCTGAAGTGGTAGT+CGG | + | chr1_1:66100941-66100960 | None:intergenic | 45.0% | |
| CAGGATGTCTACAAGATTGG+AGG | - | chr1_1:66100951-66100970 | Msa0037170:intron | 45.0% | |
| GCAAAAGTGACAACCATTCC+AGG | + | chr1_1:66101023-66101042 | None:intergenic | 45.0% | |
| TTCAGTTGTCAGTCCAGTAG+GGG | + | chr1_1:66101045-66101064 | None:intergenic | 45.0% | |
| CTTCAGTTGTCAGTCCAGTA+GGG | + | chr1_1:66101046-66101065 | None:intergenic | 45.0% | |
| ACTTCAGTTGTCAGTCCAGT+AGG | + | chr1_1:66101047-66101066 | None:intergenic | 45.0% | |
| GACAACTGAAGTCAAGTCTG+TGG | - | chr1_1:66101055-66101074 | Msa0037170:intron | 45.0% | |
| CTGTTAAGGATCTCAAGCGT+GGG | - | chr1_1:66101147-66101166 | Msa0037170:intron | 45.0% | |
| GTATGTTGCCTCAAACTCCA+AGG | - | chr1_1:66101169-66101188 | Msa0037170:intron | 45.0% | |
| TGTAAAGTTAGCAGCCTCCT+TGG | + | chr1_1:66101204-66101223 | None:intergenic | 45.0% | |
| AGCAATTTCCAATCTGGCCA+GGG | + | chr1_1:66101250-66101269 | None:intergenic | 45.0% | |
| TAGCAATTTCCAATCTGGCC+AGG | + | chr1_1:66101251-66101270 | None:intergenic | 45.0% | |
| GGGCATAGCAATTTCCAATC+TGG | + | chr1_1:66101256-66101275 | None:intergenic | 45.0% | |
| AAACTTGACAGCAATGTGGG+AGG | + | chr1_1:66101297-66101316 | None:intergenic | 45.0% | |
| CAGCAAACTTGACAGCAATG+TGG | + | chr1_1:66101301-66101320 | None:intergenic | 45.0% | |
| ATGCGTCAAACTGTAGCTGT+TGG | - | chr1_1:66101485-66101504 | Msa0037170:intron | 45.0% | |
| TGCGTCAAACTGTAGCTGTT+GGG | - | chr1_1:66101486-66101505 | Msa0037170:intron | 45.0% | |
| GGTAGATAGATCATCCTGCT+CGG | + | chr1_1:66101588-66101607 | None:intergenic | 45.0% | |
| AGCAGGATGATCTATCTACC+TGG | - | chr1_1:66101588-66101607 | Msa0037170:intron | 45.0% | |
| GCAGGATGATCTATCTACCT+GGG | - | chr1_1:66101589-66101608 | Msa0037170:intron | 45.0% | |
| !! | AGAACTGGGTTCTAGATCGA+CGG | - | chr1_1:66101735-66101754 | Msa0037170:intron | 45.0% |
| GTAAGCAAGCAGTAAGTTCC+AGG | - | chr1_1:66101824-66101843 | Msa0037170:intron | 45.0% | |
| ! | TTTAAGCTTTTGCTGGGGCA+TGG | - | chr1_1:66101910-66101929 | Msa0037170:five_prime_UTR | 45.0% |
| AAATGATCGGTACTTTGCGC+AGG | + | chr1_1:66101982-66102001 | None:intergenic | 45.0% | |
| !! | AAGAAAAAAAAAAAAAAAAA+GGG | + | chr1_1:66099746-66099765 | None:intergenic | 5.0% |
| !! | AAAGAAAAAAAAAAAAAAAA+AGG | + | chr1_1:66099747-66099766 | None:intergenic | 5.0% |
| GAGAATAGAGAGGGACGGTA+GGG | + | chr1_1:66098763-66098782 | None:intergenic | 50.0% | |
| TGAGAATAGAGAGGGACGGT+AGG | + | chr1_1:66098764-66098783 | None:intergenic | 50.0% | |
| GAAACCCTAGTCGAGTAGCA+AGG | + | chr1_1:66098798-66098817 | None:intergenic | 50.0% | |
| ! | GCCTTTTTCCCTTCTTCACG+AGG | - | chr1_1:66098827-66098846 | Msa0037170:three_prime_UTR | 50.0% |
| GGGTTGTTACCTCGTGAAGA+AGG | + | chr1_1:66098839-66098858 | None:intergenic | 50.0% | |
| !!! | GCTGGTTTTGAAGGAGTCGA+TGG | - | chr1_1:66099050-66099069 | Msa0037170:three_prime_UTR | 50.0% |
| GAAATGAATTGCCCTCACGC+AGG | + | chr1_1:66099905-66099924 | None:intergenic | 50.0% | |
| !! | TCATTGGCCATGTCGACTCT+GGG | - | chr1_1:66100174-66100193 | Msa0037170:CDS | 50.0% |
| TCTGGGAAATCAACCACCAC+TGG | - | chr1_1:66100191-66100210 | Msa0037170:CDS | 50.0% | |
| GTAGATCAAGTGACCAGTGG+TGG | + | chr1_1:66100207-66100226 | None:intergenic | 50.0% | |
| TTGACAAGCGTGTCATCGAG+AGG | - | chr1_1:66100240-66100259 | Msa0037170:CDS | 50.0% | |
| CTTAAGCTTGTCAAGGACCC+AGG | + | chr1_1:66100312-66100331 | None:intergenic | 50.0% | |
| CTGGGTCCTTGACAAGCTTA+AGG | - | chr1_1:66100310-66100329 | Msa0037170:CDS | 50.0% | |
| CTTAAGGCTGAACGGGAAAG+AGG | - | chr1_1:66100326-66100345 | Msa0037170:CDS | 50.0% | |
| AATGAAATCCCTGTGTCCGG+GGG | + | chr1_1:66100417-66100436 | None:intergenic | 50.0% | |
| GAGAACGGCACAATCAGCTT+GGG | + | chr1_1:66100462-66100481 | None:intergenic | 50.0% | |
| TGAGAACGGCACAATCAGCT+TGG | + | chr1_1:66100463-66100482 | None:intergenic | 50.0% | |
| GGCTTCAAAACCACCAGTAG+TGG | + | chr1_1:66100495-66100514 | None:intergenic | 50.0% | |
| ! | AGCAAGGAGAGCATGTTCAC+GGG | + | chr1_1:66100540-66100559 | None:intergenic | 50.0% |
| GCTCTCCTTGCTTTCACTCT+TGG | - | chr1_1:66100548-66100567 | Msa0037170:CDS | 50.0% | |
| TTGGACCCTTGTACCAGTCA+AGG | + | chr1_1:66100860-66100879 | None:intergenic | 50.0% | |
| TTGGTCAAGGGCCTCAAGAA+GGG | + | chr1_1:66100883-66100902 | None:intergenic | 50.0% | |
| TTTGGTCAAGGGCCTCAAGA+AGG | + | chr1_1:66100884-66100903 | None:intergenic | 50.0% | |
| ATCCTGAAGTGGTAGTCGGA+GGG | + | chr1_1:66100937-66100956 | None:intergenic | 50.0% | |
| AGGAATTGGAACTGTGCCTG+TGG | - | chr1_1:66100971-66100990 | Msa0037170:intron | 50.0% | |
| GGAATTGGAACTGTGCCTGT+GGG | - | chr1_1:66100972-66100991 | Msa0037170:intron | 50.0% | |
| GAATTGGAACTGTGCCTGTG+GGG | - | chr1_1:66100973-66100992 | Msa0037170:intron | 50.0% | |
| !!! | GTTGTCACTTTTGCCCCTAC+TGG | - | chr1_1:66101029-66101048 | Msa0037170:intron | 50.0% |
| GCATCATGAAGCTCTCACAG+AGG | - | chr1_1:66101082-66101101 | Msa0037170:intron | 50.0% | |
| TCCCACATTGTCACCAGGAA+GGG | + | chr1_1:66101108-66101127 | None:intergenic | 50.0% | |
| ATCCCACATTGTCACCAGGA+AGG | + | chr1_1:66101109-66101128 | None:intergenic | 50.0% | |
| GCTGTTAAGGATCTCAAGCG+TGG | - | chr1_1:66101146-66101165 | Msa0037170:intron | 50.0% | |
| TGGGTCATCCTTGGAGTTTG+AGG | + | chr1_1:66101180-66101199 | None:intergenic | 50.0% | |
| ATGAATCACCCTGGCCAGAT+TGG | - | chr1_1:66101239-66101258 | Msa0037170:intron | 50.0% | |
| AGGTGTGGCAGTCAAGAACA+GGG | + | chr1_1:66101277-66101296 | None:intergenic | 50.0% | |
| GATTGATAGGCGTTCCGGTA+AGG | - | chr1_1:66101334-66101353 | Msa0037170:intron | 50.0% | |
| GAGAAAGTCTCGACCACCAT+GGG | + | chr1_1:66101428-66101447 | None:intergenic | 50.0% | |
| AGAGAAAGTCTCGACCACCA+TGG | + | chr1_1:66101429-66101448 | None:intergenic | 50.0% | |
| GCGTCAAACTGTAGCTGTTG+GGG | - | chr1_1:66101487-66101506 | Msa0037170:intron | 50.0% | |
| TGTAGCTGTTGGGGTCATCA+AGG | - | chr1_1:66101496-66101515 | Msa0037170:intron | 50.0% | |
| CATCAAGGCTGTGGAGAAGA+AGG | - | chr1_1:66101511-66101530 | Msa0037170:intron | 50.0% | |
| GTCTGCTTAAGTCCTCCACT+GGG | + | chr1_1:66101539-66101558 | None:intergenic | 50.0% | |
| GAAGAAGAAGTGAACCGAGC+AGG | - | chr1_1:66101571-66101590 | Msa0037170:intron | 50.0% | |
| ! | TGCTGGGGCATGGTTCTATA+TGG | - | chr1_1:66101920-66101939 | Msa0037170:five_prime_UTR | 50.0% |
| AAGGGAAAAAGGCTGCGCAG+CGG | + | chr1_1:66098820-66098839 | None:intergenic | 55.0% | |
| TGTCCGGGACTTGACTCAGA+TGG | - | chr1_1:66099683-66099702 | Msa0037170:CDS | 55.0% | |
| GCTCCATCTGAGTCAAGTCC+CGG | + | chr1_1:66099689-66099708 | None:intergenic | 55.0% | |
| GATGGAGCCCTTTAACTCGG+TGG | - | chr1_1:66099701-66099720 | Msa0037170:CDS | 55.0% | |
| TCGGTGGTAGAGTAACACCG+TGG | - | chr1_1:66099717-66099736 | Msa0037170:CDS | 55.0% | |
| CCTCACGCAGGATCGAACTA+CGG | + | chr1_1:66099893-66099912 | None:intergenic | 55.0% | |
| CGTAGTTCGATCCTGCGTGA+GGG | - | chr1_1:66099891-66099910 | Msa0037170:CDS | 55.0% | |
| !! | GTCATTGGCCATGTCGACTC+TGG | - | chr1_1:66100173-66100192 | Msa0037170:CDS | 55.0% |
| TGCACTGTCATTGATGCCCC+CGG | - | chr1_1:66100398-66100417 | Msa0037170:CDS | 55.0% | |
| AGCGCTCCACAAACCTTGAC+TGG | - | chr1_1:66100844-66100863 | Msa0037170:intron | 55.0% | |
| CAAGGGTCCAACCCTTCTTG+AGG | - | chr1_1:66100869-66100888 | Msa0037170:intron | 55.0% | |
| TCAAGGGCCTCAAGAAGGGT+TGG | + | chr1_1:66100879-66100898 | None:intergenic | 55.0% | |
| GGCTTGTCTGAAGGCCTCTT+AGG | + | chr1_1:66100915-66100934 | None:intergenic | 55.0% | |
| TCCTGAAGTGGTAGTCGGAG+GGG | + | chr1_1:66100936-66100955 | None:intergenic | 55.0% | |
| CATCCTGAAGTGGTAGTCGG+AGG | + | chr1_1:66100938-66100957 | None:intergenic | 55.0% | |
| GCCCTTCCTGGTGACAATGT+GGG | - | chr1_1:66101104-66101123 | Msa0037170:intron | 55.0% | |
| AGTTAGCAGCCTCCTTGGCT+GGG | + | chr1_1:66101199-66101218 | None:intergenic | 55.0% | |
| AAGTTAGCAGCCTCCTTGGC+TGG | + | chr1_1:66101200-66101219 | None:intergenic | 55.0% | |
| GGTGTGGCAGTCAAGAACAG+GGG | + | chr1_1:66101276-66101295 | None:intergenic | 55.0% | |
| GAGGTGTGGCAGTCAAGAAC+AGG | + | chr1_1:66101278-66101297 | None:intergenic | 55.0% | |
| TGACAGCAATGTGGGAGGTG+TGG | + | chr1_1:66101292-66101311 | None:intergenic | 55.0% | |
| GATGATTCCCACCAAGCCCA+TGG | - | chr1_1:66101409-66101428 | Msa0037170:intron | 55.0% | |
| CTAACAGCAAAACGGCCGAG+TGG | + | chr1_1:66101461-66101480 | None:intergenic | 55.0% | |
| TGTTGGGGTCATCAAGGCTG+TGG | - | chr1_1:66101502-66101521 | Msa0037170:intron | 55.0% | |
| GTGGAGAAGAAGGATCCCAG+TGG | - | chr1_1:66101521-66101540 | Msa0037170:intron | 55.0% | |
| GAGAAGAAGGATCCCAGTGG+AGG | - | chr1_1:66101524-66101543 | Msa0037170:intron | 55.0% | |
| GGTCTGCTTAAGTCCTCCAC+TGG | + | chr1_1:66101540-66101559 | None:intergenic | 55.0% | |
| !! | ACTGGGTTCTAGATCGACGG+TGG | - | chr1_1:66101738-66101757 | Msa0037170:intron | 55.0% |
| GAAACAGAGTCAGCAAGCCC+TGG | + | chr1_1:66101845-66101864 | None:intergenic | 55.0% | |
| CCGTAGTTCGATCCTGCGTG+AGG | - | chr1_1:66099890-66099909 | Msa0037170:CDS | 60.0% | |
| TCATTGATGCCCCCGGACAC+AGG | - | chr1_1:66100405-66100424 | Msa0037170:CDS | 60.0% | |
| CATTGATGCCCCCGGACACA+GGG | - | chr1_1:66100406-66100425 | Msa0037170:CDS | 60.0% | |
| AGTCGGAGGGGCTTGTCTGA+AGG | + | chr1_1:66100924-66100943 | None:intergenic | 60.0% | |
| CCAGTTTCAACACGCCCCAC+AGG | + | chr1_1:66100990-66101009 | None:intergenic | 60.0% | |
| CCTGTGGGGCGTGTTGAAAC+TGG | - | chr1_1:66100987-66101006 | Msa0037170:intron | 60.0% | |
| GGCCCTTCCTGGTGACAATG+TGG | - | chr1_1:66101103-66101122 | Msa0037170:intron | 60.0% | |
| CTCCAAGGATGACCCAGCCA+AGG | - | chr1_1:66101184-66101203 | Msa0037170:intron | 60.0% | |
| CTCCTTGGCTGGGTCATCCT+TGG | + | chr1_1:66101189-66101208 | None:intergenic | 60.0% | |
| CAAGGATGACCCAGCCAAGG+AGG | - | chr1_1:66101187-66101206 | Msa0037170:intron | 60.0% | |
| GATTCCCACCAAGCCCATGG+TGG | - | chr1_1:66101412-66101431 | Msa0037170:intron | 60.0% | |
| ! | TCGACCACCATGGGCTTGGT+GGG | + | chr1_1:66101419-66101438 | None:intergenic | 60.0% |
| AGTCTCGACCACCATGGGCT+TGG | + | chr1_1:66101423-66101442 | None:intergenic | 60.0% | |
| ACAGCAAAACGGCCGAGTGG+AGG | + | chr1_1:66101458-66101477 | None:intergenic | 60.0% | |
| GCCCCTCCGACTACCACTTC+AGG | - | chr1_1:66100932-66100951 | Msa0037170:intron | 65.0% | |
| GCTCTCACAGAGGCCCTTCC+TGG | - | chr1_1:66101092-66101111 | Msa0037170:intron | 65.0% | |
| CTCGACCACCATGGGCTTGG+TGG | + | chr1_1:66101420-66101439 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 66098711 | 66102018 | 66098711 | ID=Msa0037170;Name=Msa0037170 |
| chr1_1 | mRNA | 66098711 | 66102018 | 66098711 | ID=Msa0037170-mRNA-1;Parent=Msa0037170;Name=Msa0037170-mRNA-1;_AED=0.06;_eAED=0.06;_QI=170|1|1|1|0.5|0.33|3|435|448 |
| chr1_1 | exon | 66098711 | 66100030 | 66098711 | ID=Msa0037170-mRNA-1:exon:21353;Parent=Msa0037170-mRNA-1 |
| chr1_1 | exon | 66100128 | 66100621 | 66100128 | ID=Msa0037170-mRNA-1:exon:21352;Parent=Msa0037170-mRNA-1 |
| chr1_1 | exon | 66101881 | 66102018 | 66101881 | ID=Msa0037170-mRNA-1:exon:21351;Parent=Msa0037170-mRNA-1 |
| chr1_1 | five_prime_UTR | 66101881 | 66102018 | 66101881 | ID=Msa0037170-mRNA-1:five_prime_utr;Parent=Msa0037170-mRNA-1 |
| chr1_1 | five_prime_UTR | 66100590 | 66100621 | 66100590 | ID=Msa0037170-mRNA-1:five_prime_utr;Parent=Msa0037170-mRNA-1 |
| chr1_1 | CDS | 66100128 | 66100589 | 66100128 | ID=Msa0037170-mRNA-1:cds;Parent=Msa0037170-mRNA-1 |
| chr1_1 | CDS | 66099146 | 66100030 | 66099146 | ID=Msa0037170-mRNA-1:cds;Parent=Msa0037170-mRNA-1 |
| chr1_1 | three_prime_UTR | 66098711 | 66099145 | 66098711 | ID=Msa0037170-mRNA-1:three_prime_utr;Parent=Msa0037170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
