AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0177470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0177470 MtrunA17_Chr1g0200071 80.172 232 36 1 165 396 217 438 2.74e-126 371
Msa0177470 MtrunA17_Chr1g0200071 74.497 149 33 2 28 171 1 149 4.83e-67 219
Msa0177470 MtrunA17_Chr1g0200091 80.172 232 36 1 165 396 217 438 2.74e-126 371
Msa0177470 MtrunA17_Chr1g0200091 74.497 149 33 2 28 171 1 149 4.83e-67 219
Msa0177470 MtrunA17_Chr1g0200121 79.741 232 37 1 165 396 217 438 4.02e-126 371
Msa0177470 MtrunA17_Chr1g0200121 74.497 149 33 2 28 171 1 149 4.78e-67 219
Msa0177470 MtrunA17_Chr6g0458111 77.391 230 42 1 165 394 217 436 8.44e-122 360
Msa0177470 MtrunA17_Chr6g0458111 74.497 149 33 2 28 171 1 149 5.52e-67 219
Msa0177470 MtrunA17_Chr6g0458091 77.391 230 42 1 165 394 217 436 8.44e-122 360
Msa0177470 MtrunA17_Chr6g0458091 74.497 149 33 2 28 171 1 149 5.52e-67 219
Msa0177470 MtrunA17_Chr4g0005781 77.632 228 41 1 165 392 217 434 2.12e-120 356
Msa0177470 MtrunA17_Chr4g0005781 74.497 149 33 2 28 171 1 149 3.21e-67 219
Msa0177470 MtrunA17_Chr1g0196251 51.688 385 125 6 30 363 6 380 3.06e-120 354
Msa0177470 MtrunA17_Chr1g0200111 90.960 177 16 0 212 388 1 177 1.28e-112 327
Msa0177470 MtrunA17_Chr1g0150331 72.414 232 28 2 165 396 220 415 2.54e-108 325
Msa0177470 MtrunA17_Chr1g0150331 73.826 149 34 2 28 171 1 149 3.26e-66 216
Msa0177470 MtrunA17_Chr8g0340771 70.130 231 59 1 165 395 219 439 4.83e-106 320
Msa0177470 MtrunA17_Chr8g0340771 66.216 148 45 3 29 171 4 151 1.92e-53 183
Msa0177470 MtrunA17_Chr1g0204031 68.398 231 62 2 165 395 213 432 1.20e-99 315
Msa0177470 MtrunA17_Chr1g0204031 58.115 191 62 4 30 204 5 193 5.81e-56 197
Msa0177470 MtrunA17_Chr1g0193591 66.228 228 67 1 165 392 217 434 1.04e-98 301
Msa0177470 MtrunA17_Chr1g0193591 68.276 145 43 1 30 171 5 149 1.91e-60 202
Msa0177470 MtrunA17_Chr1g0156421 64.474 228 71 1 165 392 217 434 2.07e-96 295
Msa0177470 MtrunA17_Chr1g0156421 66.901 142 44 1 33 171 8 149 7.35e-58 195
Msa0177470 MtrunA17_Chr5g0415391 64.629 229 71 1 165 393 179 397 6.70e-96 293
Msa0177470 MtrunA17_Chr5g0415391 57.658 111 44 1 64 171 1 111 1.59e-33 129
Msa0177470 MtrunA17_Chr2g0319341 61.135 229 77 2 165 391 116 334 2.85e-86 269
Msa0177470 MtrunA17_Chr2g0298371 60.550 218 74 2 167 382 101 308 2.12e-84 259
Msa0177470 MtrunA17_Chr2g0318281 57.000 200 76 2 191 390 5 194 1.16e-69 219
Msa0177470 MtrunA17_Chr1g0156411 67.883 137 41 1 33 166 12 148 8.62e-61 193
Msa0177470 MtrunA17_Chr1g0210931 51.339 224 50 3 167 390 66 230 8.94e-61 197
Msa0177470 MtrunA17_Chr8g0340361 55.135 185 77 2 212 391 1 184 1.03e-60 194
Msa0177470 MtrunA17_Chr1g0204041 70.139 144 38 2 28 166 1 144 3.35e-60 192
Msa0177470 MtrunA17_Chr8g0336511 63.694 157 51 3 21 171 59 215 2.42e-57 192
Msa0177470 MtrunA17_Chr8g0336511 60.331 121 38 1 165 285 283 393 6.41e-38 140
Msa0177470 MtrunA17_Chr2g0318291 62.411 141 49 2 30 166 7 147 4.92e-50 168
Msa0177470 MtrunA17_Chr8g0340371 60.563 142 50 3 30 167 5 144 1.25e-46 159
Msa0177470 MtrunA17_Chr4g0026961 47.486 179 73 3 167 343 53 212 4.80e-45 155
Msa0177470 MtrunA17_Chr8g0341021 66.667 99 30 1 30 125 6 104 6.83e-39 135
Msa0177470 MtrunA17_Chr2g0298381 69.474 95 26 1 30 121 5 99 2.14e-38 133
Msa0177470 MtrunA17_Chr8g0380091 45.390 141 69 3 32 166 275 413 8.66e-31 124
Msa0177470 MtrunA17_Chr8g0380091 25.974 231 158 4 163 391 485 704 1.14e-15 79.0
Msa0177470 MtrunA17_Chr6g0483121 42.857 140 77 1 30 166 89 228 1.04e-29 120
Msa0177470 MtrunA17_Chr6g0483121 28.829 222 143 4 167 386 306 514 2.42e-22 99.0
Msa0177470 MtrunA17_Chr8g0392641 42.657 143 79 1 27 166 141 283 1.25e-29 120
Msa0177470 MtrunA17_Chr8g0392641 29.148 223 143 4 167 387 361 570 2.22e-20 93.2
Msa0177470 MtrunA17_Chr1g0200101 48.201 139 45 3 46 184 2 113 1.16e-27 105
Msa0177470 MtrunA17_Chr1g0211481 65.823 79 24 1 30 105 4 82 8.98e-27 102
Msa0177470 MtrunA17_Chr2g0319351 70.833 72 18 1 30 98 5 76 4.62e-25 97.4
Msa0177470 MtrunA17_Chr8g0341041 64.179 67 24 0 165 231 6 72 9.29e-22 91.3
Msa0177470 MtrunA17_Chr8g0341041 59.322 59 24 0 332 390 100 158 2.64e-15 73.2
Msa0177470 MtrunA17_Chr3g0116821 29.333 150 85 3 19 166 77 207 1.19e-11 66.2
Msa0177470 MtrunA17_Chr2g0287231 27.000 200 108 7 16 202 2 176 1.76e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0177470 AT1G07930.2 55.145 379 140 10 28 395 1 360 8.04e-125 365
Msa0177470 AT1G07920.1 74.892 231 48 1 165 395 217 437 3.09e-119 354
Msa0177470 AT1G07920.1 74.497 149 33 2 28 171 1 149 6.08e-67 219
Msa0177470 AT1G07940.4 74.892 231 48 1 165 395 217 437 3.09e-119 354
Msa0177470 AT1G07940.4 74.497 149 33 2 28 171 1 149 6.08e-67 219
Msa0177470 AT1G07940.1 74.892 231 48 1 165 395 217 437 3.09e-119 354
Msa0177470 AT1G07940.1 74.497 149 33 2 28 171 1 149 6.08e-67 219
Msa0177470 AT1G07940.2 74.892 231 48 1 165 395 217 437 3.09e-119 354
Msa0177470 AT1G07940.2 74.497 149 33 2 28 171 1 149 6.08e-67 219
Msa0177470 AT1G07940.3 74.892 231 48 1 165 395 217 437 3.09e-119 354
Msa0177470 AT1G07940.3 74.497 149 33 2 28 171 1 149 6.08e-67 219
Msa0177470 AT5G60390.3 74.892 231 48 1 165 395 217 437 3.09e-119 354
Msa0177470 AT5G60390.3 74.497 149 33 2 28 171 1 149 6.08e-67 219
Msa0177470 AT5G60390.1 74.892 231 48 1 165 395 217 437 3.09e-119 354
Msa0177470 AT5G60390.1 74.497 149 33 2 28 171 1 149 6.08e-67 219
Msa0177470 AT5G60390.2 74.892 231 48 1 165 395 217 437 3.09e-119 354
Msa0177470 AT5G60390.2 74.497 149 33 2 28 171 1 149 6.08e-67 219
Msa0177470 AT1G07930.1 74.892 231 48 1 165 395 217 437 3.09e-119 354
Msa0177470 AT1G07930.1 74.497 149 33 2 28 171 1 149 6.08e-67 219
Msa0177470 AT1G35550.1 66.990 103 34 0 293 395 1 103 1.56e-43 147
Msa0177470 AT1G18070.1 42.143 140 78 1 30 166 99 238 7.40e-29 118
Msa0177470 AT1G18070.1 29.018 224 140 6 168 387 317 525 4.15e-21 95.5
Msa0177470 AT1G18070.2 42.143 140 78 1 30 166 99 238 7.40e-29 118
Msa0177470 AT1G18070.2 29.018 224 140 6 168 387 317 525 4.15e-21 95.5
Msa0177470 AT1G18070.3 42.143 140 78 1 30 166 99 238 9.18e-29 118
Msa0177470 AT1G18070.3 27.897 233 142 6 168 387 317 536 1.04e-18 88.6
Msa0177470 AT5G10630.1 42.143 140 71 4 32 163 239 376 4.29e-28 116
Msa0177470 AT5G10630.1 27.232 224 151 3 165 387 451 663 2.12e-17 84.7
Msa0177470 AT5G10630.5 42.143 140 71 4 32 163 240 377 4.30e-28 116
Msa0177470 AT5G10630.5 27.232 224 151 3 165 387 452 664 2.13e-17 84.7
Msa0177470 AT5G10630.2 42.143 140 71 4 32 163 240 377 4.30e-28 116
Msa0177470 AT5G10630.2 27.232 224 151 3 165 387 452 664 2.13e-17 84.7
Msa0177470 AT5G10630.3 42.143 140 71 4 32 163 310 447 4.81e-28 116
Msa0177470 AT5G10630.3 27.232 224 151 3 165 387 522 734 2.64e-17 84.3
Msa0177470 AT5G10630.4 42.143 140 71 4 32 163 315 452 5.21e-28 116
Msa0177470 AT5G10630.4 27.232 224 151 3 165 387 527 739 2.63e-17 84.3
Msa0177470 AT4G20360.1 29.560 159 85 4 18 171 63 199 8.69e-13 70.1
Msa0177470 AT4G20360.2 29.560 159 85 4 18 171 63 199 8.69e-13 70.1

Find 277 sgRNAs with CRISPR-Local

Find 740 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACCATTCTTCAAGAATT+TGG 0.066665 1_4:-64422821 None:intergenic
ATCACCATTCATCAGGAATT+TGG 0.127785 1_4:-64430574 None:intergenic
CTTATCCTTGATTCCTGTAT+TGG 0.213955 1_4:+64429396 Msa0177470:CDS
GTCTACAAGTTTGGAGGAAT+TGG 0.246382 1_4:+64430129 Msa0177470:CDS
GCTCTCCTTGCTTTCACTCT+TGG 0.289982 1_4:+64421966 Msa0177470:five_prime_UTR
AAGTTAGCGGCCTCCTTGGC+TGG 0.295660 1_4:-64430399 None:intergenic
CACCCTGGCAAGATTGAAAA+TGG 0.298039 1_4:+64430447 Msa0177470:CDS
GCCTCTTAGGCTCGTTGATT+TGG 0.314662 1_4:-64430071 None:intergenic
GTCTACAAGATTGGAGGAAT+TGG 0.315206 1_4:+64422406 Msa0177470:five_prime_UTR
GCCTCTTAGGCTCATTGATT+TGG 0.315866 1_4:-64422348 None:intergenic
CTTCAGAATGTCTACAAGTT+TGG 0.317793 1_4:+64430120 Msa0177470:CDS
TGTCAAGAATGTTGCTGTTA+AGG 0.325240 1_4:+64422582 Msa0177470:five_prime_UTR
TCACCATTCTTCAAGAATTT+GGG 0.331757 1_4:-64422820 None:intergenic
ATAGCCAACCTTCTTCAAAT+AGG 0.332380 1_4:-64422212 None:intergenic
CGTACTCTGGATTATTTAGA+TGG 0.336833 1_4:-64420526 None:intergenic
TCACCATTCATCAGGAATTT+GGG 0.341892 1_4:-64430573 None:intergenic
CTTCTTCTTCAATGCTGACT+TGG 0.345006 1_4:-64423007 None:intergenic
AAGATTAACATTGTTGTCAT+TGG 0.347311 1_4:+64429075 Msa0177470:CDS
CCTCCGACGGAGTACCTTCC+CGG 0.350967 1_4:+64430294 Msa0177470:CDS
CACATCAACATTGTGGTCAT+TGG 0.354316 1_4:+64421576 Msa0177470:five_prime_UTR
GTTCTCCTTGCTTTCACTCT+TGG 0.355410 1_4:+64429465 Msa0177470:CDS
TGTTGAGAACGTTGATGTTA+AGG 0.355649 1_4:+64430335 Msa0177470:CDS
TTCCTTGGCTGGGTCATCCT+TGG 0.355973 1_4:-64422635 None:intergenic
TGAGAAAGAAGCTGCTGAAA+TGG 0.366760 1_4:+64429182 Msa0177470:CDS
AAGTTGGCAGATTCCTTGGC+TGG 0.367989 1_4:-64422646 None:intergenic
ATTCCATTTGTTCCCATCTC+TGG 0.368209 1_4:+64422247 Msa0177470:five_prime_UTR
GCTCTCACAGAGGCCCTTCC+TGG 0.369900 1_4:+64422541 Msa0177470:five_prime_UTR
ATATCTACCCTTGGAGTACT+TGG 0.380807 1_4:-64422164 None:intergenic
TTTAAGCTCTTAAGTCCAAA+TGG 0.381529 1_4:+64421539 Msa0177470:five_prime_UTR
ACTAAGATTGATAGGCGTTC+TGG 0.382761 1_4:+64422778 Msa0177470:five_prime_UTR
ACCAAGATTGATAGGCGTTC+TGG 0.383042 1_4:+64430531 Msa0177470:CDS
CTCCTTGGCTGGGTCATCCT+TGG 0.385824 1_4:-64430388 None:intergenic
TGCGTCAAACTGTGGCTGTT+GGG 0.386099 1_4:+64422935 Msa0177470:five_prime_UTR
TTCCATGGTCTGGCCATCCC+TGG 0.389009 1_4:-64429439 None:intergenic
GTCATTGGCCATGTCGACTC+TGG 0.395247 1_4:+64421591 Msa0177470:five_prime_UTR
CACCTCCAAGTTTGTAGATC+AGG 0.403181 1_4:-64429134 None:intergenic
TGTGAAGAACGAACGGTAGT+AGG 0.403368 1_4:-64420579 None:intergenic
GTCATTGGCGATGTCGACTC+TGG 0.409390 1_4:+64429090 Msa0177470:CDS
TCATTCCTTGCTACTCAACT+AGG 0.416643 1_4:+64420613 Msa0177470:five_prime_UTR
GCAAAAGTGACAACCATTCC+AGG 0.418006 1_4:-64422469 None:intergenic
CTCATCATTGATTCCACTAC+TGG 0.419293 1_4:+64421897 Msa0177470:five_prime_UTR
ATGAATCACCCTGGCCAGAT+TGG 0.425183 1_4:+64422688 Msa0177470:five_prime_UTR
CTTAATGAAATCCCTGTGTC+CGG 0.429384 1_4:-64421835 None:intergenic
CCTGTGGGGCGTGTCGAGAC+TGG 0.431830 1_4:+64422436 Msa0177470:five_prime_UTR
CACCCTGGCCAGATTGGAAA+TGG 0.432985 1_4:+64422694 Msa0177470:five_prime_UTR
TGTAAAGTTGGCAGATTCCT+TGG 0.433201 1_4:-64422650 None:intergenic
GAGAAAGAAGCTGCTGAAAT+GGG 0.439100 1_4:+64429183 Msa0177470:CDS
CTTGAGCTTGTCAAGGATCC+AGG 0.439379 1_4:-64429226 None:intergenic
AGCGTTCATTCAAGTATGCC+TGG 0.444655 1_4:+64421709 Msa0177470:five_prime_UTR
AGCTTCAAAAGCACCAATAC+AGG 0.445136 1_4:-64429409 None:intergenic
GAGCATAGCCATTTCCAATC+TGG 0.445726 1_4:-64422702 None:intergenic
GGAGAACTTGTTCCATGGTC+TGG 0.446567 1_4:-64429449 None:intergenic
GGCTTGTCTGAAGGCCTCTT+AGG 0.446650 1_4:-64422361 None:intergenic
GGCTTGTCTGAAGGCCTCTT+AGG 0.446650 1_4:-64430084 None:intergenic
ACCTTGTGACGAAGGAGAAA+AGG 0.446990 1_4:-64420656 None:intergenic
AAACCAGAGATGGGAACAAA+TGG 0.449170 1_4:-64422250 None:intergenic
GGTCTGCTTAAGTCCTCCAC+TGG 0.451209 1_4:-64422986 None:intergenic
ACTTCAGTTGTCAGTCCAGT+AGG 0.456008 1_4:-64422493 None:intergenic
ACCAGAACGCCTATCAATCT+TGG 0.457446 1_4:-64430532 None:intergenic
CTACAGGATGTCTACAAGAT+TGG 0.458825 1_4:+64422397 Msa0177470:five_prime_UTR
AGTCTCAACCACCATGGGCT+TGG 0.462350 1_4:-64422869 None:intergenic
ACCAAATCAATGAGCCTAAG+AGG 0.463105 1_4:+64422347 Msa0177470:five_prime_UTR
CATTCCTTGCTACTCAACTA+GGG 0.464545 1_4:+64420614 Msa0177470:five_prime_UTR
TGGGTCATCCTTGGAGTTTG+AGG 0.465051 1_4:-64422626 None:intergenic
ACCAAATCAACGAGCCTAAG+AGG 0.465441 1_4:+64430070 Msa0177470:CDS
TTCATTAAGAACATGATCAC+TGG 0.467307 1_4:+64429348 Msa0177470:CDS
CTCAACCACCATGGGCTTGG+TGG 0.468734 1_4:-64422866 None:intergenic
TGGGTCATCCTTGGAGTTAG+AGG 0.469156 1_4:-64430379 None:intergenic
TAGGCTCATTGATTTGGTCA+AGG 0.472707 1_4:-64422342 None:intergenic
TACCAGCATCACCATTCATC+AGG 0.473503 1_4:-64430581 None:intergenic
TTAATGAAATCCCTGTGTCC+GGG 0.473933 1_4:-64421834 None:intergenic
AGTCCAAATGGGTAAGGAAA+AGG 0.474535 1_4:+64421551 Msa0177470:five_prime_UTR
AGGCTCATTGATTTGGTCAA+GGG 0.475242 1_4:-64422341 None:intergenic
GGTTTATAAACTACGTACTC+TGG 0.475822 1_4:-64420539 None:intergenic
AACTTGTTACTAAGATTGAT+AGG 0.478352 1_4:+64422770 Msa0177470:five_prime_UTR
TAGCCATTTCCAATCTGGCC+AGG 0.481484 1_4:-64422697 None:intergenic
TCACCATTGACATTGCTCTC+TGG 0.481623 1_4:+64421769 Msa0177470:five_prime_UTR
TAGGCTCGTTGATTTGGTCA+AGG 0.482009 1_4:-64430065 None:intergenic
TTAAGCTCTTAAGTCCAAAT+GGG 0.483320 1_4:+64421540 Msa0177470:five_prime_UTR
ACAATCAGCTTGGGATGTTC+CGG 0.483792 1_4:-64421868 None:intergenic
TGTAAAGTTAGCGGCCTCCT+TGG 0.484480 1_4:-64430403 None:intergenic
AGCTTGTTACCAAGATTGAT+AGG 0.488333 1_4:+64430523 Msa0177470:CDS
TACAAACCTTGACTGGTACA+AGG 0.490199 1_4:+64422300 Msa0177470:five_prime_UTR
TCATCCTATTTGAAGAAGGT+TGG 0.491235 1_4:+64422208 Msa0177470:five_prime_UTR
AGACTTCAGTCAAGTATGCC+TGG 0.493195 1_4:+64429208 Msa0177470:CDS
GATTGATAGGCGTTCTGGTA+AGG 0.495592 1_4:+64422783 Msa0177470:five_prime_UTR
ATCTCCCTCAAAACCAGAGA+TGG 0.496573 1_4:-64422260 None:intergenic
CATCAAGGCTGTGGAGAAGA+AGG 0.499167 1_4:+64422960 Msa0177470:five_prime_UTR
CAGAATGTCTACAAGTTTGG+AGG 0.499933 1_4:+64430123 Msa0177470:CDS
AAGCACCAATACAGGAATCA+AGG 0.500537 1_4:-64429401 None:intergenic
CTGACCATCCTTAGAAATAC+CGG 0.501461 1_4:-64421931 None:intergenic
AGTTTCATCCTATTTGAAGA+AGG 0.501588 1_4:+64422204 Msa0177470:five_prime_UTR
ATCATTGATTCCACTACTGG+TGG 0.502099 1_4:+64421900 Msa0177470:five_prime_UTR
GAGGTGTGGCAGTCAAGAAC+AGG 0.504238 1_4:-64422724 None:intergenic
TGCACTGTCATTGATGTCCC+TGG 0.505435 1_4:+64429315 Msa0177470:CDS
CTTCAGTTGTCAGTCCAGTA+GGG 0.506099 1_4:-64422492 None:intergenic
AATTTCATCATATCTACCCT+TGG 0.508007 1_4:-64422173 None:intergenic
AATGACAGTGCAGTAGTACT+TGG 0.509426 1_4:-64421805 None:intergenic
AGTCGGAGGGGCTTGTCTGA+AGG 0.510894 1_4:-64430093 None:intergenic
CTCTTAAGTCCAAATGGGTA+AGG 0.512110 1_4:+64421545 Msa0177470:five_prime_UTR
AGTCTGCTAAAGTCCTCCAC+TGG 0.513823 1_4:-64430739 None:intergenic
AGCAGGATGATCTATTCACT+TGG 0.514214 1_4:+64423037 Msa0177470:exon
AGGCTCGTTGATTTGGTCAA+GGG 0.514470 1_4:-64430064 None:intergenic
TGAGAACGGCACAATCAGCT+TGG 0.516820 1_4:-64421878 None:intergenic
AGGAATTGGAACTGTGCCTG+TGG 0.517140 1_4:+64422420 Msa0177470:five_prime_UTR
GATCACTTGAGATGTAAAGT+TGG 0.519518 1_4:-64422662 None:intergenic
GAGGTGTGGCAGTGAAGAAC+AGG 0.519789 1_4:-64430477 None:intergenic
ACTTTAGCTGTCAGTCCAGT+AGG 0.521394 1_4:-64430216 None:intergenic
GAAGAAGAAGTGAACCGAGC+AGG 0.523086 1_4:+64423020 Msa0177470:five_prime_UTR
GAACAAAAGCTATGAGATGA+AGG 0.523844 1_4:-64423081 None:intergenic
GTGAACAAGGCGTCCACCAT+AGG 0.526823 1_4:-64430264 None:intergenic
GAGCCCAAATTCTTGAAGAA+TGG 0.528480 1_4:+64422817 Msa0177470:five_prime_UTR
TCCCACATTGTCACCAGGAA+GGG 0.528721 1_4:-64422554 None:intergenic
AGTCGGAGGGGCTTGTCTGA+AGG 0.529275 1_4:-64422370 None:intergenic
AAGCCCAAATTCCTGATGAA+TGG 0.529635 1_4:+64430570 Msa0177470:CDS
GAGAACGGCACAATCAGCTT+GGG 0.529995 1_4:-64421877 None:intergenic
GGTCACCTGATCTACAAACT+TGG 0.530032 1_4:+64429129 Msa0177470:CDS
TGTTGGGGTCATCAAGGCTG+TGG 0.532596 1_4:+64422951 Msa0177470:five_prime_UTR
GTGAAGAACGAACGGTAGTA+GGG 0.534571 1_4:-64420578 None:intergenic
CAGGATGTCTACAAGATTGG+AGG 0.535636 1_4:+64422400 Msa0177470:five_prime_UTR
CATCACGGCTGTGGAGAAGA+AGG 0.535804 1_4:+64430713 Msa0177470:CDS
GGAATTGGAACTGTGCCTGT+GGG 0.536194 1_4:+64422421 Msa0177470:five_prime_UTR
GAGACTGGTGTCTTGAAACC+TGG 0.536851 1_4:+64430174 Msa0177470:CDS
GATTGATAGGCGTTCTGGTA+GGG 0.537919 1_4:+64430536 Msa0177470:CDS
CCTGTGGGACGTGTTGAGAC+TGG 0.537981 1_4:+64430159 Msa0177470:CDS
CTTTAGCTGTCAGTCCAGTA+GGG 0.538115 1_4:-64430215 None:intergenic
CTTCCAGAGAGCAATGTCAA+TGG 0.541189 1_4:-64421772 None:intergenic
ATTAAATCTCACATAGTCGC+CGG 0.542013 1_4:-64430313 None:intergenic
AGCAAACTTGACAGCAATGT+GGG 0.543557 1_4:-64422746 None:intergenic
TTCTCTGAATATCCTCCACT+TGG 0.543785 1_4:+64430645 Msa0177470:CDS
TCATTGGCGATGTCGACTCT+GGG 0.543884 1_4:+64429091 Msa0177470:CDS
TGCACTGTCATTGATGCCCC+CGG 0.544718 1_4:+64421816 Msa0177470:five_prime_UTR
GCCCCTCCGACTACCACTAC+AGG 0.545601 1_4:+64422381 Msa0177470:five_prime_UTR
CACTTGATCTACAAGCTTGG+AGG 0.545798 1_4:+64421633 Msa0177470:five_prime_UTR
TCAAGGGCCTCAAGAAGAGT+TGG 0.546278 1_4:-64422325 None:intergenic
TGTGGCTGTTGGGGTCATCA+AGG 0.547535 1_4:+64422945 Msa0177470:five_prime_UTR
GTCTGCTTAAGTCCTCCACT+GGG 0.549538 1_4:-64422985 None:intergenic
AGTTAGCGGCCTCCTTGGCT+GGG 0.551707 1_4:-64430398 None:intergenic
GGCTTCAAAACCACCAGTAG+TGG 0.551737 1_4:-64421910 None:intergenic
GCTTGTCCCTGACAGTAAAA+CGG 0.552331 1_4:-64430668 None:intergenic
AGATTGATAGGCGTTCTGGT+AGG 0.554210 1_4:+64430535 Msa0177470:CDS
GGTCACTTGATCTACAAGCT+TGG 0.555547 1_4:+64421630 Msa0177470:five_prime_UTR
CCAGTCTCGACACGCCCCAC+AGG 0.557031 1_4:-64422436 None:intergenic
TCAACCACCATGGGCTTGGT+GGG 0.557624 1_4:-64422865 None:intergenic
ATCACACTTGACAGCAATGT+GGG 0.559060 1_4:-64430499 None:intergenic
AAGCAAGGAGAGCATGTTCA+CGG 0.559179 1_4:-64421956 None:intergenic
TCATTGGCCATGTCGACTCT+GGG 0.559180 1_4:+64421592 Msa0177470:five_prime_UTR
CTCAAGGCTGAACGTGAAAG+AGG 0.559327 1_4:+64421744 Msa0177470:five_prime_UTR
TTCTTGAAGAATGGTGATGC+TGG 0.561159 1_4:+64422826 Msa0177470:five_prime_UTR
GAAGCCGGTATTTCTAAGGA+TGG 0.564413 1_4:+64421927 Msa0177470:five_prime_UTR
TCTGGGAAATCAACCACCAC+TGG 0.564990 1_4:+64421609 Msa0177470:five_prime_UTR
TTGGACCCTTGTACCAGTCA+AGG 0.565802 1_4:-64422306 None:intergenic
ACAAACCTTGACTGGTACAA+GGG 0.567625 1_4:+64422301 Msa0177470:five_prime_UTR
CACCTGATCTACAAACTTGG+AGG 0.568965 1_4:+64429132 Msa0177470:CDS
TCAACCACCATCGGCATGGT+GGG 0.569853 1_4:-64430618 None:intergenic
TAATGAAATCCCTGTGTCCG+GGG 0.570266 1_4:-64421833 None:intergenic
ATGCGTCAAACTGTGGCTGT+TGG 0.571110 1_4:+64422934 Msa0177470:five_prime_UTR
TTCATTAAGAACATGATCAC+CGG 0.572337 1_4:+64421849 Msa0177470:five_prime_UTR
AGCAAGGAGAGCATGTTCAC+GGG 0.572470 1_4:-64421955 None:intergenic
GACTTGAGATGTAAAGTTAG+CGG 0.574731 1_4:-64430412 None:intergenic
TTCCTGATGAATGGTGATGC+TGG 0.575455 1_4:+64430579 Msa0177470:CDS
GAGAAAGTCTCAACCACCAT+GGG 0.575954 1_4:-64422874 None:intergenic
GAAGCTAGCATGTCCAGGGA+TGG 0.576146 1_4:+64429426 Msa0177470:CDS
CTTGAGCTTGTCAAGGACCC+AGG 0.577041 1_4:-64421727 None:intergenic
AGCGCTCTACAAACCTTGAC+TGG 0.578233 1_4:+64422293 Msa0177470:five_prime_UTR
ATTCTGAAGCGGTAGTCGGA+GGG 0.580221 1_4:-64430106 None:intergenic
TATCTACCCTTGGAGTACTT+GGG 0.580849 1_4:-64422163 None:intergenic
GAGAAAGTCTCAACCACCAT+CGG 0.581032 1_4:-64430627 None:intergenic
GCGTCAAACTGTGGCTGTTG+GGG 0.582443 1_4:+64422936 Msa0177470:five_prime_UTR
ATCCTGTAGTGGTAGTCGGA+GGG 0.583230 1_4:-64422383 None:intergenic
GTAGGGTTTATATATAAACA+AGG 0.583652 1_4:-64420561 None:intergenic
TGTTGGTGTCATCACGGCTG+TGG 0.584289 1_4:+64430704 Msa0177470:CDS
TTAAATCTCACATAGTCGCC+GGG 0.584341 1_4:-64430312 None:intergenic
CTTCGAGTAAGAAATGTCAA+TGG 0.585142 1_4:-64429271 None:intergenic
ATCCCACATTGTCACCAGGA+AGG 0.585536 1_4:-64422555 None:intergenic
GAGACTGGTGTCATAAAACC+TGG 0.585699 1_4:+64422451 Msa0177470:five_prime_UTR
CTGGGTCCTTGACAAGCTCA+AGG 0.585742 1_4:+64421728 Msa0177470:five_prime_UTR
AGTTGGCAGATTCCTTGGCT+GGG 0.586600 1_4:-64422645 None:intergenic
GGCCCTTCCTGGTGACAATG+TGG 0.586985 1_4:+64422552 Msa0177470:five_prime_UTR
TTGATTTCCCAGAGTCGACA+TGG 0.588973 1_4:-64421599 None:intergenic
CTATGTTGCCTCTAACTCCA+AGG 0.589207 1_4:+64430371 Msa0177470:CDS
CTGTTAAGGATCTCAAGCGT+GGG 0.589274 1_4:+64422596 Msa0177470:five_prime_UTR
CCAGTCTCAACACGTCCCAC+AGG 0.589278 1_4:-64430159 None:intergenic
TCCTGTAGTGGTAGTCGGAG+GGG 0.589369 1_4:-64422382 None:intergenic
TGGTGTCTTGAAACCTGGAA+TGG 0.590307 1_4:+64430179 Msa0177470:CDS
GTCTGCTAAAGTCCTCCACT+GGG 0.590439 1_4:-64430738 None:intergenic
TTCTCTGAATATCCTCCACT+CGG 0.591172 1_4:+64422892 Msa0177470:five_prime_UTR
GCCCTTCCTGGTGACAATGT+GGG 0.592402 1_4:+64422553 Msa0177470:five_prime_UTR
CCGGGAAGGTACTCCGTCGG+AGG 0.592556 1_4:-64430294 None:intergenic
CTGGATCCTTGACAAGCTCA+AGG 0.592768 1_4:+64429227 Msa0177470:CDS
CTCCAAGGATGACCCAGCCA+AGG 0.595225 1_4:+64422633 Msa0177470:five_prime_UTR
AGCAAGGAGAACTTGTTCCA+TGG 0.595909 1_4:-64429454 None:intergenic
ATCTCACATAGTCGCCGGGA+AGG 0.596745 1_4:-64430308 None:intergenic
TTCTGAAGCGGTAGTCGGAG+GGG 0.597002 1_4:-64430105 None:intergenic
TCTGGGAAGTCAACTACCAC+CGG 0.597549 1_4:+64429108 Msa0177470:CDS
TAGGGTTTATATATAAACAA+GGG 0.598049 1_4:-64420560 None:intergenic
TAGATATGATGAAATTGTGA+AGG 0.599770 1_4:+64422180 Msa0177470:five_prime_UTR
GCATGTCTCTAACAGCAAAA+CGG 0.600985 1_4:-64422915 None:intergenic
AGACATTCTGAAGCGGTAGT+CGG 0.601657 1_4:-64430110 None:intergenic
CTCCAAGGATGACCCAGCCA+AGG 0.604300 1_4:+64430386 Msa0177470:CDS
GCGTTCATTCAAGTATGCCT+GGG 0.605879 1_4:+64421710 Msa0177470:five_prime_UTR
GATGATTCCCACCAAGCCCA+TGG 0.606444 1_4:+64422858 Msa0177470:five_prime_UTR
TCTCCCTCAAAACCAGAGAT+GGG 0.607478 1_4:-64422259 None:intergenic
GATGATTCCCACCATGCCGA+TGG 0.607531 1_4:+64430611 Msa0177470:CDS
GTCCAGGGATGGCCAGACCA+TGG 0.608617 1_4:+64429437 Msa0177470:CDS
CATTCTGAAGCGGTAGTCGG+AGG 0.611063 1_4:-64430107 None:intergenic
CTCAACCACCATCGGCATGG+TGG 0.611307 1_4:-64430619 None:intergenic
TACTACACCCAAGTACTCCA+AGG 0.613862 1_4:+64422156 Msa0177470:five_prime_UTR
GGTTCGTTACCTTGTGACGA+AGG 0.614137 1_4:-64420664 None:intergenic
AAGTTTGTAGATCAGGTGAC+CGG 0.615425 1_4:-64429127 None:intergenic
TCATTAAGAACATGATCACT+GGG 0.616929 1_4:+64429349 Msa0177470:CDS
ACAGTAAAACGGCCAAGTGG+AGG 0.618271 1_4:-64430657 None:intergenic
TATGAGTTGTGAAGAACGAA+CGG 0.620255 1_4:-64420586 None:intergenic
TCACACCAAGAGTGAAAGCA+AGG 0.621193 1_4:-64421971 None:intergenic
GTTCAGCCTTGAGCTTGTCA+AGG 0.621463 1_4:-64429233 None:intergenic
GCTGTTAAGGATCTCAAGCG+TGG 0.622485 1_4:+64422595 Msa0177470:five_prime_UTR
TTCAGTTGTCAGTCCAGTAG+GGG 0.622733 1_4:-64422491 None:intergenic
CAAGGGTCCAACTCTTCTTG+AGG 0.623175 1_4:+64422318 Msa0177470:five_prime_UTR
AGCCATTTCCAATCTGGCCA+GGG 0.623271 1_4:-64422696 None:intergenic
GATGCACGATAAACCTATGG+TGG 0.623909 1_4:+64430251 Msa0177470:CDS
GACAACTGAAGTCAAGTCTG+TGG 0.624055 1_4:+64422504 Msa0177470:five_prime_UTR
AGACATCCTGTAGTGGTAGT+CGG 0.624076 1_4:-64422387 None:intergenic
ACAGCAAAACGGCCGAGTGG+AGG 0.624787 1_4:-64422904 None:intergenic
TTGACAAGCGTGTCATCGAG+AGG 0.625348 1_4:+64421658 Msa0177470:five_prime_UTR
TGGTGTCATAAAACCTGGAA+TGG 0.625384 1_4:+64422456 Msa0177470:five_prime_UTR
AGTCTCAACCACCATCGGCA+TGG 0.625823 1_4:-64430622 None:intergenic
TCACGCCAAGAGTGAAAGCA+AGG 0.625940 1_4:-64429470 None:intergenic
GCAGGATGATCTATTCACTT+GGG 0.628034 1_4:+64423038 Msa0177470:exon
GTTCAGCCTTGAGCTTGTCA+AGG 0.628494 1_4:-64421734 None:intergenic
GGAGATGCACGATAAACCTA+TGG 0.628686 1_4:+64430248 Msa0177470:CDS
GTATGTTGCCTCAAACTCCA+AGG 0.633897 1_4:+64422618 Msa0177470:five_prime_UTR
AAGCGTCAAACTGTGGCTGT+TGG 0.635052 1_4:+64430687 Msa0177470:CDS
GACAGCTAAAGTCACGTCTG+TGG 0.638212 1_4:+64430227 Msa0177470:CDS
CATCCTGTAGTGGTAGTCGG+AGG 0.640179 1_4:-64422384 None:intergenic
CAGCAAACTTGACAGCAATG+TGG 0.640811 1_4:-64422747 None:intergenic
AGAGAAAGTCTCAACCACCA+TGG 0.641605 1_4:-64422875 None:intergenic
TTCTGGTAAGGAGATTGAGA+AGG 0.643722 1_4:+64422795 Msa0177470:five_prime_UTR
GAATTGGAACTGTGCCTGTG+GGG 0.644316 1_4:+64422422 Msa0177470:five_prime_UTR
AGTGGAATCAATGATGAGAA+CGG 0.644693 1_4:-64421892 None:intergenic
TGTCTTGAAACCTGGAATGG+AGG 0.645931 1_4:+64430182 Msa0177470:CDS
AACTTGTAGACATTCTGAAG+CGG 0.647943 1_4:-64430117 None:intergenic
TGTGGCTGTTGGTGTCATCA+CGG 0.648036 1_4:+64430698 Msa0177470:CDS
CAAGGATGACCCAGCCAAGG+AGG 0.648083 1_4:+64430389 Msa0177470:CDS
AGTGAATAGATCATCCTGCT+CGG 0.649458 1_4:-64423034 None:intergenic
TGACAGCAATGTGGGAGGTG+TGG 0.650950 1_4:-64422738 None:intergenic
TGACAGCAATGTGGGAGGTG+TGG 0.650950 1_4:-64430491 None:intergenic
GATGTTAAGGATCTCAAGAG+TGG 0.651493 1_4:+64430348 Msa0177470:CDS
GATTCCCACCATGCCGATGG+TGG 0.651793 1_4:+64430614 Msa0177470:CDS
TTTAGCTGTCAGTCCAGTAG+GGG 0.651902 1_4:-64430214 None:intergenic
TTAAATCCCACATTGTCACC+AGG 0.657091 1_4:-64422559 None:intergenic
ATCTTGTAGACATCCTGTAG+TGG 0.657887 1_4:-64422394 None:intergenic
AATGATCTGCTGTTGCAACA+AGG 0.659392 1_4:+64421998 Msa0177470:five_prime_UTR
CAGGGACAAGCGTCAAACTG+TGG 0.660617 1_4:+64430680 Msa0177470:CDS
TTTGTAGATCAGGTGACCGG+TGG 0.660704 1_4:-64429124 None:intergenic
CATCACACTTGACAGCAATG+TGG 0.661173 1_4:-64430500 None:intergenic
AATGAAATCCCTGTGTCCGG+GGG 0.661737 1_4:-64421832 None:intergenic
TCGCCGGGAAGGTACTCCGT+CGG 0.666337 1_4:-64430297 None:intergenic
GAGAAGAAGGATCCCAGTGG+AGG 0.667988 1_4:+64422973 Msa0177470:five_prime_UTR
GAGAAGAAGGATCCCAGTGG+AGG 0.667988 1_4:+64430726 Msa0177470:CDS
AAAGGTTCACATCAACATTG+TGG 0.675059 1_4:+64421569 Msa0177470:five_prime_UTR
GTCGTCGTCATGAATCACCC+TGG 0.677445 1_4:+64430432 Msa0177470:CDS
ACTACACCCAAGTACTCCAA+GGG 0.678033 1_4:+64422157 Msa0177470:five_prime_UTR
CTTGTAGATCAAGTGACCAG+TGG 0.682705 1_4:-64421625 None:intergenic
GAAACCCTAGTTGAGTAGCA+AGG 0.685158 1_4:-64420618 None:intergenic
TAGAGACATGCGTCAAACTG+TGG 0.690315 1_4:+64422927 Msa0177470:five_prime_UTR
CTAACAGCAAAACGGCCGAG+TGG 0.692072 1_4:-64422907 None:intergenic
AGGAATTGGAACTGTACCTG+TGG 0.693222 1_4:+64430143 Msa0177470:CDS
AAACTTGACAGCAATGTGGG+AGG 0.695398 1_4:-64422743 None:intergenic
GTAGATCAAGTGACCAGTGG+TGG 0.699002 1_4:-64421622 None:intergenic
GTGATCATAATGAATCACCC+TGG 0.699056 1_4:+64422679 Msa0177470:five_prime_UTR
CTGACAGTAAAACGGCCAAG+TGG 0.702953 1_4:-64430660 None:intergenic
ACACTTGACAGCAATGTGGG+AGG 0.707816 1_4:-64430496 None:intergenic
GATTCCCACCAAGCCCATGG+TGG 0.723849 1_4:+64422861 Msa0177470:five_prime_UTR
GTGGAGAAGAAGGATCCCAG+TGG 0.734762 1_4:+64422970 Msa0177470:five_prime_UTR
GTGGAGAAGAAGGATCCCAG+TGG 0.734762 1_4:+64430723 Msa0177470:CDS
GGAATTGGAACTGTACCTGT+GGG 0.747552 1_4:+64430144 Msa0177470:CDS
GCATCATGAAGCTCTCACAG+AGG 0.758446 1_4:+64422531 Msa0177470:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATGATGATATAATAA+TGG - chr1_4:64420982-64421001 None:intergenic 10.0%
!! TAATCATATGTAAAATAAAT+AGG + chr1_4:64423516-64423535 Msa0177470:intron 10.0%
!! TAAATCAATATTATTTCATA+TGG - chr1_4:64425026-64425045 None:intergenic 10.0%
!! TTAACAAATTCTTATAAAAA+CGG - chr1_4:64426993-64427012 None:intergenic 10.0%
!!! CAAATTTTTTTATTTTGTTT+TGG + chr1_4:64429664-64429683 Msa0177470:intron 10.0%
!! TTATTATATACTTGTTTGTT+TGG + chr1_4:64421019-64421038 Msa0177470:intron 15.0%
!!! TATTACTTAATTTGTTATGA+AGG + chr1_4:64421129-64421148 Msa0177470:intron 15.0%
!! AATAAAATATACAACTTCAA+GGG - chr1_4:64422041-64422060 None:intergenic 15.0%
!! TAATAAAATATACAACTTCA+AGG - chr1_4:64422042-64422061 None:intergenic 15.0%
!! TATAAGAAAAAATTGAGTAT+GGG - chr1_4:64423861-64423880 None:intergenic 15.0%
!!! AGAACTTATCTTTTTTTTTT+TGG + chr1_4:64423928-64423947 Msa0177470:intron 15.0%
!!! TTCTAAATAGTTTTTCTTAT+AGG + chr1_4:64425815-64425834 Msa0177470:intron 15.0%
!!! TCTAAATAGTTTTTCTTATA+GGG + chr1_4:64425816-64425835 Msa0177470:intron 15.0%
!!! TTTTTCTCAAATGATAAAAA+AGG - chr1_4:64426898-64426917 None:intergenic 15.0%
!!! TTTTATTTACCCTAATTAAT+TGG + chr1_4:64428330-64428349 Msa0177470:intron 15.0%
!! AAGAAATTTATAAAAGGAAA+AGG - chr1_4:64428447-64428466 None:intergenic 15.0%
!! TTGTAGAAGAAATTTATAAA+AGG - chr1_4:64428453-64428472 None:intergenic 15.0%
!!! ACATTCAGTTTAAATTTTTA+TGG - chr1_4:64429633-64429652 None:intergenic 15.0%
!! ACAAAATAAAAAAATTTGTG+AGG - chr1_4:64429662-64429681 None:intergenic 15.0%
!! TAGGGTTTATATATAAACAA+GGG - chr1_4:64420563-64420582 None:intergenic 20.0%
!! GTATTACTTAATTCATGTTT+GGG + chr1_4:64421151-64421170 Msa0177470:intron 20.0%
!!! TTAAAGTGAATTATGGATTA+TGG - chr1_4:64421340-64421359 None:intergenic 20.0%
!!! CATTAGTTTAAAGTGAATTA+TGG - chr1_4:64421347-64421366 None:intergenic 20.0%
!! ATAAAATATACAACTTCAAG+GGG - chr1_4:64422040-64422059 None:intergenic 20.0%
!!! TTATTTTTGTGTTTATTCCT+TGG + chr1_4:64423251-64423270 Msa0177470:intron 20.0%
!!! GTTTGGTTTGATATATAATA+GGG - chr1_4:64423375-64423394 None:intergenic 20.0%
!!! AGTTTGGTTTGATATATAAT+AGG - chr1_4:64423376-64423395 None:intergenic 20.0%
!!! TTGCAAGAGAAATTATTTTT+TGG + chr1_4:64423552-64423571 Msa0177470:intron 20.0%
!!! TTTTTCTAAAGAGAGATAAA+CGG - chr1_4:64423834-64423853 None:intergenic 20.0%
!! GTATAAGAAAAAATTGAGTA+TGG - chr1_4:64423862-64423881 None:intergenic 20.0%
!! TTTATTGTGTATTATTAGTC+AGG + chr1_4:64424995-64425014 Msa0177470:intron 20.0%
!! TTATTGTGTATTATTAGTCA+GGG + chr1_4:64424996-64425015 Msa0177470:intron 20.0%
!!! TTTTTTAATATAGAAGCTGA+AGG - chr1_4:64426009-64426028 None:intergenic 20.0%
!! AAAAAATCTCATTAATGAGT+TGG + chr1_4:64426727-64426746 Msa0177470:intron 20.0%
!! TATAAGATGAGAACTTTAAA+TGG + chr1_4:64426776-64426795 Msa0177470:intron 20.0%
!!! AATTTTGAAAATCAAAATGG+CGG - chr1_4:64427144-64427163 None:intergenic 20.0%
!!! TGCAATTTTGAAAATCAAAA+TGG - chr1_4:64427147-64427166 None:intergenic 20.0%
!!! ATTTTGATTTTCAAAATTGC+AGG + chr1_4:64427146-64427165 Msa0177470:intron 20.0%
!!! TTTTGATTTTCAAAATTGCA+GGG + chr1_4:64427147-64427166 Msa0177470:intron 20.0%
!!! GTTAATTTTTTCATCAACTT+AGG - chr1_4:64427190-64427209 None:intergenic 20.0%
!! ATAACAAAAAATGTTGAAGA+AGG + chr1_4:64427274-64427293 Msa0177470:intron 20.0%
!! TTTAACATATAGATCAGATA+AGG - chr1_4:64427466-64427485 None:intergenic 20.0%
!! TTGATGTTTAGATCAATAAT+TGG + chr1_4:64427958-64427977 Msa0177470:intron 20.0%
!! AAACAAATCCAAGAAATATT+CGG - chr1_4:64428197-64428216 None:intergenic 20.0%
!!! TCATTTAACATGTGTTTTTT+GGG + chr1_4:64428276-64428295 Msa0177470:intron 20.0%
!! TAATTAGGGTAAATAAAACA+TGG - chr1_4:64428328-64428347 None:intergenic 20.0%
!! GATGAAATTAAAATTTGTGA+AGG - chr1_4:64428414-64428433 None:intergenic 20.0%
!! AAAAGAAACCTTTGTAAAAA+AGG - chr1_4:64428490-64428509 None:intergenic 20.0%
!! TTATCTAGAGATAATATGAA+TGG + chr1_4:64428515-64428534 Msa0177470:intron 20.0%
!! GAACACTAAAAAAAAACATT+CGG + chr1_4:64428901-64428920 Msa0177470:intron 20.0%
!!! CTTACTTTTATTTTTCTCTT+TGG + chr1_4:64428977-64428996 Msa0177470:intron 20.0%
!!! TATTGTTTTCTTTGTTGAAT+TGG + chr1_4:64429013-64429032 Msa0177470:intron 20.0%
!! CAAAATTCGCTATATTTATA+GGG - chr1_4:64429602-64429621 None:intergenic 20.0%
!! TCAAAATTCGCTATATTTAT+AGG - chr1_4:64429603-64429622 None:intergenic 20.0%
! GTAGGGTTTATATATAAACA+AGG - chr1_4:64420564-64420583 None:intergenic 25.0%
! TTGAGAAGAAAAGATATTGA+AGG - chr1_4:64420700-64420719 None:intergenic 25.0%
! ATGATGATATAATAATGGCA+TGG - chr1_4:64420977-64420996 None:intergenic 25.0%
! TTTGTTTGGTATTCAATCAT+TGG + chr1_4:64421033-64421052 Msa0177470:intron 25.0%
! TGTGTTCATACTTATGTATA+TGG + chr1_4:64421084-64421103 Msa0177470:intron 25.0%
! GTGTTCATACTTATGTATAT+GGG + chr1_4:64421085-64421104 Msa0177470:intron 25.0%
! TGTTCATACTTATGTATATG+GGG + chr1_4:64421086-64421105 Msa0177470:intron 25.0%
! GGTATTACTTAATTCATGTT+TGG + chr1_4:64421150-64421169 Msa0177470:intron 25.0%
!! CCATAAAGATTTTATGCAAT+GGG + chr1_4:64421242-64421261 Msa0177470:intron 25.0%
!! CATAAAGATTTTATGCAATG+GGG + chr1_4:64421243-64421262 Msa0177470:intron 25.0%
! TAGATATGATGAAATTGTGA+AGG + chr1_4:64422180-64422199 Msa0177470:five_prime_UTR 25.0%
!!! AACTTGTTACTAAGATTGAT+AGG + chr1_4:64422770-64422789 Msa0177470:five_prime_UTR 25.0%
! TTATATATCAAACCAAACTC+AGG + chr1_4:64423377-64423396 Msa0177470:intron 25.0%
! TAATAGTTTGAATTGAACCA+AGG - chr1_4:64423475-64423494 None:intergenic 25.0%
! ATGTAAAATAAATAGGATCC+AGG + chr1_4:64423523-64423542 Msa0177470:intron 25.0%
! ACTAAGAGAAATAAATGTAG+TGG - chr1_4:64423623-64423642 None:intergenic 25.0%
! TAGTGACAATGAACAAAAAT+AGG + chr1_4:64423639-64423658 Msa0177470:intron 25.0%
!!! TAGTTTTGATCTCATTATTC+AGG - chr1_4:64423674-64423693 None:intergenic 25.0%
!! TAGAACTATGATTAGCTATT+TGG - chr1_4:64423785-64423804 None:intergenic 25.0%
!! TAGTTCTATCAAATTGTTTC+TGG + chr1_4:64423797-64423816 Msa0177470:intron 25.0%
!!! TTTTCTAAAGAGAGATAAAC+GGG - chr1_4:64423833-64423852 None:intergenic 25.0%
!!! TCTCTCAGTAATTTTTTTAG+AGG + chr1_4:64423999-64424018 Msa0177470:intron 25.0%
!!! ATGGTCTTATTAGGTTTTTT+TGG + chr1_4:64424314-64424333 Msa0177470:intron 25.0%
! AAAATCGGTCTTTAAATAAG+AGG + chr1_4:64424359-64424378 Msa0177470:intron 25.0%
! AAAATGAATATGTTGTGGAA+TGG - chr1_4:64424727-64424746 None:intergenic 25.0%
! CTAGTAAAATGAATATGTTG+TGG - chr1_4:64424732-64424751 None:intergenic 25.0%
!! CACAACATATTCATTTTACT+AGG + chr1_4:64424730-64424749 Msa0177470:intron 25.0%
!! AACATATTCATTTTACTAGG+AGG + chr1_4:64424733-64424752 Msa0177470:intron 25.0%
! AAGCATTTCAACTATTATAG+AGG - chr1_4:64424785-64424804 None:intergenic 25.0%
!!! TTTAGTTTGTTTTTGCTGTT+TGG + chr1_4:64424887-64424906 Msa0177470:intron 25.0%
! TATAAAGCTCATAAAATAGC+TGG - chr1_4:64425130-64425149 None:intergenic 25.0%
! TTTCTCATGATAGTACTAAA+TGG - chr1_4:64425379-64425398 None:intergenic 25.0%
!! TTGAAGAAAGTGTAAACATT+CGG + chr1_4:64425404-64425423 Msa0177470:intron 25.0%
! TGATAATTACTCTATCATGA+AGG - chr1_4:64425490-64425509 None:intergenic 25.0%
! AAATGAGTAATTACAATCAC+CGG + chr1_4:64425732-64425751 Msa0177470:intron 25.0%
! TCAATCGTTTAGTTATTTAC+CGG - chr1_4:64425754-64425773 None:intergenic 25.0%
! AACGATTGATATATCTGATA+TGG + chr1_4:64425765-64425784 Msa0177470:intron 25.0%
! AAGTCATAAAATACCAATGA+AGG + chr1_4:64425860-64425879 Msa0177470:intron 25.0%
! AAAGATACTTCAACTTACTT+TGG - chr1_4:64425960-64425979 None:intergenic 25.0%
! CTAGCAAAATGAATATGTTT+GGG + chr1_4:64426563-64426582 Msa0177470:intron 25.0%
! TAGCAAAATGAATATGTTTG+GGG + chr1_4:64426564-64426583 Msa0177470:intron 25.0%
! GGAAATACATATGAAAATTG+AGG - chr1_4:64426595-64426614 None:intergenic 25.0%
!!! AGGAGTTTTATCTTCAATTT+TGG + chr1_4:64426649-64426668 Msa0177470:intron 25.0%
! GGATTACTCAAAGTTTAATA+TGG - chr1_4:64427123-64427142 None:intergenic 25.0%
! AAAAAATGTTGAAGAAGGTT+TGG + chr1_4:64427279-64427298 Msa0177470:intron 25.0%
!! TTTGAAATGACAAATCAAGT+TGG - chr1_4:64427564-64427583 None:intergenic 25.0%
! GGAAAAAAGCAATATGTTTA+GGG - chr1_4:64427915-64427934 None:intergenic 25.0%
! GTTTAGATCAATAATTGGAA+TGG + chr1_4:64427963-64427982 Msa0177470:intron 25.0%
! ACACACAAACTTCTATAAAT+TGG - chr1_4:64428031-64428050 None:intergenic 25.0%
!! TCAAGTACAATATTTTTCTG+TGG - chr1_4:64428087-64428106 None:intergenic 25.0%
! TATATAGTCCGAATATTTCT+TGG + chr1_4:64428186-64428205 Msa0177470:intron 25.0%
!! GAATATTTCTTGGATTTGTT+TGG + chr1_4:64428196-64428215 Msa0177470:intron 25.0%
!!! CTCATTTAACATGTGTTTTT+TGG + chr1_4:64428275-64428294 Msa0177470:intron 25.0%
! TAAATAAAACATGGTCAAAG+TGG - chr1_4:64428319-64428338 None:intergenic 25.0%
! TGTTGAAGCAAATATGATTT+AGG + chr1_4:64428568-64428587 Msa0177470:intron 25.0%
! GTTGAAGCAAATATGATTTA+GGG + chr1_4:64428569-64428588 Msa0177470:intron 25.0%
! AGATAATACTCTATGATCTT+AGG + chr1_4:64428785-64428804 Msa0177470:intron 25.0%
! GATAATACTCTATGATCTTA+GGG + chr1_4:64428786-64428805 Msa0177470:intron 25.0%
! AAAATATACATTGACAAGAG+AGG - chr1_4:64428930-64428949 None:intergenic 25.0%
! AAGATTAACATTGTTGTCAT+TGG + chr1_4:64429075-64429094 Msa0177470:CDS 25.0%
!! TAATGAAATTTTTGTGTCCA+GGG - chr1_4:64429335-64429354 None:intergenic 25.0%
!! TTAATGAAATTTTTGTGTCC+AGG - chr1_4:64429336-64429355 None:intergenic 25.0%
! AAATATGCATCTTCTTCAAA+GGG - chr1_4:64429543-64429562 None:intergenic 25.0%
! ACATTCATATGAACATTAAG+TGG - chr1_4:64429700-64429719 None:intergenic 25.0%
! GATATTGAAGGATTTAGAGT+TGG - chr1_4:64420688-64420707 None:intergenic 30.0%
!! TGAACTTTTGAAAGAGTTGA+TGG + chr1_4:64420908-64420927 Msa0177470:intron 30.0%
GGCTAACAAATATATGTCAA+AGG - chr1_4:64421224-64421243 None:intergenic 30.0%
! GCCATAAAGATTTTATGCAA+TGG + chr1_4:64421241-64421260 Msa0177470:intron 30.0%
CCCATTGCATAAAATCTTTA+TGG - chr1_4:64421245-64421264 None:intergenic 30.0%
! AATTATGGATTATGGAGATG+CGG - chr1_4:64421332-64421351 None:intergenic 30.0%
! GTTTTCTGTGCTGAAAATAA+TGG + chr1_4:64421499-64421518 Msa0177470:intron 30.0%
TTTAAGCTCTTAAGTCCAAA+TGG + chr1_4:64421539-64421558 Msa0177470:five_prime_UTR 30.0%
TTAAGCTCTTAAGTCCAAAT+GGG + chr1_4:64421540-64421559 Msa0177470:five_prime_UTR 30.0%
TTCATTAAGAACATGATCAC+CGG + chr1_4:64421849-64421868 Msa0177470:five_prime_UTR 30.0%
AATTTCATCATATCTACCCT+TGG - chr1_4:64422176-64422195 None:intergenic 30.0%
AGTTTCATCCTATTTGAAGA+AGG + chr1_4:64422204-64422223 Msa0177470:five_prime_UTR 30.0%
! GAACAAATGGAATTTTGTCT+GGG - chr1_4:64422240-64422259 None:intergenic 30.0%
TCACCATTCTTCAAGAATTT+GGG - chr1_4:64422823-64422842 None:intergenic 30.0%
ATCACCATTCTTCAAGAATT+TGG - chr1_4:64422824-64422843 None:intergenic 30.0%
AAAACTTAAACATCACACCA+AGG - chr1_4:64423271-64423290 None:intergenic 30.0%
!! TGTGATGTTTAAGTTTTTGC+TGG + chr1_4:64423274-64423293 Msa0177470:intron 30.0%
!! GTGATGTTTAAGTTTTTGCT+GGG + chr1_4:64423275-64423294 Msa0177470:intron 30.0%
!! TGATGTTTAAGTTTTTGCTG+GGG + chr1_4:64423276-64423295 Msa0177470:intron 30.0%
AAAAATGATCCTGACATTCT+AGG - chr1_4:64423334-64423353 None:intergenic 30.0%
ATATAATAGGGTAAACGATC+AGG - chr1_4:64423363-64423382 None:intergenic 30.0%
ATTTAACCAAGATGACTTTG+TGG + chr1_4:64423424-64423443 Msa0177470:intron 30.0%
TTTCTCTTGCAAAATAATCC+TGG - chr1_4:64423544-64423563 None:intergenic 30.0%
! AACTATGATTAGCTATTTGG+TGG - chr1_4:64423782-64423801 None:intergenic 30.0%
! TTTCTAAAGAGAGATAAACG+GGG - chr1_4:64423832-64423851 None:intergenic 30.0%
CTTTACATGACAATTCACAA+TGG + chr1_4:64424295-64424314 Msa0177470:intron 30.0%
!! CAATTCACAATGGTCTTATT+AGG + chr1_4:64424305-64424324 Msa0177470:intron 30.0%
!!! GATATCCTTTTTTCTATCGT+CGG - chr1_4:64424442-64424461 None:intergenic 30.0%
ACTTTGTAGGCATTATGAAA+TGG - chr1_4:64424510-64424529 None:intergenic 30.0%
TTCATAATGCCTACAAAGTT+TGG + chr1_4:64424511-64424530 Msa0177470:intron 30.0%
GAGATCAAACTAACTTCAAA+CGG - chr1_4:64424552-64424571 None:intergenic 30.0%
CATCTTATATATCTTGACAC+TGG + chr1_4:64424573-64424592 Msa0177470:intron 30.0%
GTAAAATCTCATCAATGAGT+TGG - chr1_4:64424611-64424630 None:intergenic 30.0%
! ACCATTTGAAGCAATACAAA+TGG + chr1_4:64424632-64424651 Msa0177470:intron 30.0%
TCCATTTGTATTGCTTCAAA+TGG - chr1_4:64424636-64424655 None:intergenic 30.0%
ATGATGTGTGGAAATACATA+TGG + chr1_4:64424691-64424710 Msa0177470:intron 30.0%
CAACTATTATAGAGGTGATT+GGG - chr1_4:64424777-64424796 None:intergenic 30.0%
TCAACTATTATAGAGGTGAT+TGG - chr1_4:64424778-64424797 None:intergenic 30.0%
!!! TTTTTGCTGTTTGGAATGTA+TGG + chr1_4:64424896-64424915 Msa0177470:intron 30.0%
CAACAGACATGATATACTTT+AGG - chr1_4:64424974-64424993 None:intergenic 30.0%
!! AAAACTGAATAAAGGCATCA+AGG - chr1_4:64425236-64425255 None:intergenic 30.0%
TCAAGCAGAAAACTGAATAA+AGG - chr1_4:64425244-64425263 None:intergenic 30.0%
TATTCCTTATTCCTAAGTTG+AGG + chr1_4:64425272-64425291 Msa0177470:intron 30.0%
AATACCTCAACTTAGGAATA+AGG - chr1_4:64425279-64425298 None:intergenic 30.0%
CACGAGACTTAATGATATTA+TGG + chr1_4:64425895-64425914 Msa0177470:intron 30.0%
!! TAGTTTATGCCATAGTTTTG+AGG + chr1_4:64426180-64426199 Msa0177470:intron 30.0%
TATCCCTATGTTATAGTTTG+TGG - chr1_4:64426328-64426347 None:intergenic 30.0%
AACCAAACTAACTTAGGAAA+GGG + chr1_4:64426454-64426473 Msa0177470:intron 30.0%
! AACATATTCATTTTGCTAGG+AGG - chr1_4:64426562-64426581 None:intergenic 30.0%
! CCAAACATATTCATTTTGCT+AGG - chr1_4:64426565-64426584 None:intergenic 30.0%
CCTAGCAAAATGAATATGTT+TGG + chr1_4:64426562-64426581 Msa0177470:intron 30.0%
AAAATGAATATGTTTGGGGA+TGG + chr1_4:64426568-64426587 Msa0177470:intron 30.0%
TAAAACTCCTCGAGAATAAA+TGG - chr1_4:64426639-64426658 None:intergenic 30.0%
! CATTTGAAGCAATACAGATT+CGG - chr1_4:64426705-64426724 None:intergenic 30.0%
AGATGAGAACTTTAAATGGT+TGG + chr1_4:64426780-64426799 Msa0177470:intron 30.0%
!! ATTGTCCTCTAAAGTATGAA+TGG + chr1_4:64426844-64426863 Msa0177470:intron 30.0%
! TTTCAGTTATTTCCATTACC+TGG - chr1_4:64427100-64427119 None:intergenic 30.0%
!!! CTCACATCTAATTAGTTTTG+AGG + chr1_4:64427209-64427228 Msa0177470:intron 30.0%
TAATACAACTGTGTGAAACA+AGG + chr1_4:64427401-64427420 Msa0177470:intron 30.0%
GTAAAACACACAAAAGATCA+TGG + chr1_4:64427423-64427442 Msa0177470:intron 30.0%
!! ATCTTTGAAATATCCGACTA+AGG + chr1_4:64427532-64427551 Msa0177470:intron 30.0%
! ACTATACCGACTAAATATCA+AGG + chr1_4:64427583-64427602 Msa0177470:intron 30.0%
TCATGTCCTTGATATTTAGT+CGG - chr1_4:64427592-64427611 None:intergenic 30.0%
! ATGTTTAGGGTTCATATTGA+TGG - chr1_4:64427902-64427921 None:intergenic 30.0%
GGGAAAAAAGCAATATGTTT+AGG - chr1_4:64427916-64427935 None:intergenic 30.0%
! ATGGTCATGATTATTTGTTG+TGG + chr1_4:64427982-64428001 Msa0177470:intron 30.0%
TTATAGAAGTTTGTGTGTCA+TGG + chr1_4:64428033-64428052 Msa0177470:intron 30.0%
GCTAAAACTCATACTTTGTA+GGG - chr1_4:64428144-64428163 None:intergenic 30.0%
TGCTAAAACTCATACTTTGT+AGG - chr1_4:64428145-64428164 None:intergenic 30.0%
GTGTAACGACCAATTAATTA+GGG - chr1_4:64428342-64428361 None:intergenic 30.0%
AGTGTAACGACCAATTAATT+AGG - chr1_4:64428343-64428362 None:intergenic 30.0%
!! AGGATGAGAAGGTATTTATA+GGG - chr1_4:64428394-64428413 None:intergenic 30.0%
!! AAGGATGAGAAGGTATTTAT+AGG - chr1_4:64428395-64428414 None:intergenic 30.0%
AAAATTTGTGAAGGATGAGA+AGG - chr1_4:64428405-64428424 None:intergenic 30.0%
!!! ACCATTGACCTTTTTTACAA+AGG + chr1_4:64428479-64428498 Msa0177470:intron 30.0%
ACCTTTGTAAAAAAGGTCAA+TGG - chr1_4:64428483-64428502 None:intergenic 30.0%
TCAGAAAGGCAACAAAAAAA+AGG - chr1_4:64428640-64428659 None:intergenic 30.0%
!! CGCTGTATTTTTAAATTTCG+TGG + chr1_4:64428724-64428743 Msa0177470:intron 30.0%
!! ATTCAAAGGCATTAAATAGC+AGG - chr1_4:64428828-64428847 None:intergenic 30.0%
! CAGATCTTTTTGTGTTTTCA+AGG + chr1_4:64429036-64429055 Msa0177470:intron 30.0%
!! TTTGTGTTTTCAAGGACAAA+TGG + chr1_4:64429044-64429063 Msa0177470:CDS 30.0%
!! TTGTGTTTTCAAGGACAAAT+GGG + chr1_4:64429045-64429064 Msa0177470:CDS 30.0%
TTCATTAAGAACATGATCAC+TGG + chr1_4:64421849-64421868 Msa0177470:five_prime_UTR 30.0%
TCATTAAGAACATGATCACT+GGG + chr1_4:64429349-64429368 Msa0177470:CDS 30.0%
CAAATATGCATCTTCTTCAA+AGG - chr1_4:64429544-64429563 None:intergenic 30.0%
TGAACATTAAGTGGTCATTA+AGG - chr1_4:64429691-64429710 None:intergenic 30.0%
AGTTTCATCCTATTTGAAGA+AGG + chr1_4:64422204-64422223 Msa0177470:five_prime_UTR 30.0%
CGTACTCTGGATTATTTAGA+TGG - chr1_4:64420529-64420548 None:intergenic 35.0%
GGTTTATAAACTACGTACTC+TGG - chr1_4:64420542-64420561 None:intergenic 35.0%
TATGAGTTGTGAAGAACGAA+CGG - chr1_4:64420589-64420608 None:intergenic 35.0%
!! ACCATCATCGATTCATTCAT+AGG + chr1_4:64420741-64420760 Msa0177470:intron 35.0%
ACCTATGAATGAATCGATGA+TGG - chr1_4:64420745-64420764 None:intergenic 35.0%
! TTGGTATTCAATCATTGGCT+TGG + chr1_4:64421038-64421057 Msa0177470:intron 35.0%
! GGGTTTTCTATCTGTTATGA+AGG + chr1_4:64421106-64421125 Msa0177470:intron 35.0%
! ATTATGGATTATGGAGATGC+GGG - chr1_4:64421331-64421350 None:intergenic 35.0%
TATTTCAGCAGATATAGAGC+AGG - chr1_4:64421393-64421412 None:intergenic 35.0%
TCTGCTGAAATATAGTGACA+TGG + chr1_4:64421401-64421420 Msa0177470:intron 35.0%
AAAGGTTCACATCAACATTG+TGG + chr1_4:64421569-64421588 Msa0177470:five_prime_UTR 35.0%
AGTGGAATCAATGATGAGAA+CGG - chr1_4:64421895-64421914 None:intergenic 35.0%
!!! TTTTGAAGCCGGTATTTCTA+AGG + chr1_4:64421923-64421942 Msa0177470:five_prime_UTR 35.0%
ATCCATCTGTTCAAGATAGA+TGG - chr1_4:64422134-64422153 None:intergenic 35.0%
TCATCCTATTTGAAGAAGGT+TGG + chr1_4:64422208-64422227 Msa0177470:five_prime_UTR 35.0%
ATAGCCAACCTTCTTCAAAT+AGG - chr1_4:64422215-64422234 None:intergenic 35.0%
! GGAACAAATGGAATTTTGTC+TGG - chr1_4:64422241-64422260 None:intergenic 35.0%
! TGTCAAGAATGTTGCTGTTA+AGG + chr1_4:64422582-64422601 Msa0177470:five_prime_UTR 35.0%
GATCACTTGAGATGTAAAGT+TGG - chr1_4:64422665-64422684 None:intergenic 35.0%
GAACAAAAGCTATGAGATGA+AGG - chr1_4:64423084-64423103 None:intergenic 35.0%
! ATAGCTTTTGTTCTCAGAAC+TGG + chr1_4:64423091-64423110 Msa0177470:intron 35.0%
! TAGCTTTTGTTCTCAGAACT+GGG + chr1_4:64423092-64423111 Msa0177470:intron 35.0%
ATATTGTTGCCTAGAATGTC+AGG + chr1_4:64423322-64423341 Msa0177470:intron 35.0%
AGTTTATTGTTGCCTGAGTT+TGG - chr1_4:64423392-64423411 None:intergenic 35.0%
AGTCATCTTGGTTAAATAGC+AGG - chr1_4:64423421-64423440 None:intergenic 35.0%
GGTCCATCAATTTCATAGTT+GGG - chr1_4:64423602-64423621 None:intergenic 35.0%
TGGTCCATCAATTTCATAGT+TGG - chr1_4:64423603-64423622 None:intergenic 35.0%
!! CCTTAACTCTAAGTTTGTTG+TGG - chr1_4:64423729-64423748 None:intergenic 35.0%
CCACAACAAACTTAGAGTTA+AGG + chr1_4:64423726-64423745 Msa0177470:intron 35.0%
! TGATTAGCTATTTGGTGGAT+TGG - chr1_4:64423777-64423796 None:intergenic 35.0%
GTGAATTGTCATGTAAAGCT+AGG - chr1_4:64424293-64424312 None:intergenic 35.0%
GTCAGACTTTATTCAACGTA+AGG + chr1_4:64424403-64424422 Msa0177470:intron 35.0%
TTTCTCCGACGATAGAAAAA+AGG + chr1_4:64424434-64424453 Msa0177470:intron 35.0%
TCAAACTAACTTCAAACGGT+TGG - chr1_4:64424548-64424567 None:intergenic 35.0%
!! TATATCTTGACACTGGTTCT+TGG + chr1_4:64424580-64424599 Msa0177470:intron 35.0%
ATGTATGGATTTCCTTTGAC+AGG + chr1_4:64424911-64424930 Msa0177470:intron 35.0%
ATTCACTTCATTCCTGTCAA+AGG - chr1_4:64424926-64424945 None:intergenic 35.0%
!! CTTCTGAAATACCTCAACTT+AGG - chr1_4:64425286-64425305 None:intergenic 35.0%
! CTAAGTTGAGGTATTTCAGA+AGG + chr1_4:64425284-64425303 Msa0177470:intron 35.0%
TAGTACTAAATGGAGGAGTA+AGG - chr1_4:64425369-64425388 None:intergenic 35.0%
CTCATGATAGTACTAAATGG+AGG - chr1_4:64425376-64425395 None:intergenic 35.0%
ATAAGCGATGTAGCAAGTTT+AGG - chr1_4:64425545-64425564 None:intergenic 35.0%
!!! CATGACTCTTATTTTTCGCT+TGG + chr1_4:64425589-64425608 Msa0177470:intron 35.0%
! TACTGCATCCATTGTTGTTA+TGG + chr1_4:64425644-64425663 Msa0177470:intron 35.0%
GTTTCCAACCATAACAACAA+TGG - chr1_4:64425655-64425674 None:intergenic 35.0%
TGTTGTTATGGTTGGAAACA+AGG + chr1_4:64425656-64425675 Msa0177470:intron 35.0%
! TGGTTGGAAACAAGGTATTA+TGG + chr1_4:64425664-64425683 Msa0177470:intron 35.0%
! TTGGAAACAAGGTATTATGG+TGG + chr1_4:64425667-64425686 Msa0177470:intron 35.0%
! TGGAAACAAGGTATTATGGT+GGG + chr1_4:64425668-64425687 Msa0177470:intron 35.0%
CACAAAAGGACTTCATACAT+AGG + chr1_4:64425696-64425715 Msa0177470:intron 35.0%
TAAGTCTCGTGCTAAAAAGA+GGG - chr1_4:64425886-64425905 None:intergenic 35.0%
TTAAGTCTCGTGCTAAAAAG+AGG - chr1_4:64425887-64425906 None:intergenic 35.0%
! TTACTTTGGTTTCATCGTCT+CGG - chr1_4:64425946-64425965 None:intergenic 35.0%
AAACTAAATGTTGATGCTGC+AGG - chr1_4:64426166-64426185 None:intergenic 35.0%
TGGAAATCTCCTCAAAACTA+TGG - chr1_4:64426192-64426211 None:intergenic 35.0%
! TTTTTCACAATCACTTCCAC+CGG + chr1_4:64426264-64426283 Msa0177470:intron 35.0%
GCTTGAACTGAAAGATATAC+CGG - chr1_4:64426286-64426305 None:intergenic 35.0%
GTTCAAGCATTTCCTATTTC+TGG + chr1_4:64426298-64426317 Msa0177470:intron 35.0%
! CCTATGTTATAGTTTGTGGT+GGG - chr1_4:64426324-64426343 None:intergenic 35.0%
CCACCACAAACTATAACATA+GGG + chr1_4:64426322-64426341 Msa0177470:intron 35.0%
!! GAAGGTGATTTTAGCACTTT+TGG - chr1_4:64426400-64426419 None:intergenic 35.0%
GAAGAGAACCAAACTAACTT+AGG + chr1_4:64426448-64426467 Msa0177470:intron 35.0%
GAACCAAACTAACTTAGGAA+AGG + chr1_4:64426453-64426472 Msa0177470:intron 35.0%
! ATTGACCACGCTTTTATGTT+GGG - chr1_4:64426481-64426500 None:intergenic 35.0%
! TATTGACCACGCTTTTATGT+TGG - chr1_4:64426482-64426501 None:intergenic 35.0%
!! TGAAGTCATGTTTGTTGTCT+CGG - chr1_4:64426517-64426536 None:intergenic 35.0%
ATAAGAGTAGCAGTGAAGTA+TGG - chr1_4:64426616-64426635 None:intergenic 35.0%
CTCTTATCCATTTATTCTCG+AGG + chr1_4:64426629-64426648 Msa0177470:intron 35.0%
CGAATCTGTATTGCTTCAAA+TGG + chr1_4:64426703-64426722 Msa0177470:intron 35.0%
CATCTTATATCTCATGACAC+TGG - chr1_4:64426765-64426784 None:intergenic 35.0%
! ACTTTAAATGGTTGGTTACG+AGG + chr1_4:64426788-64426807 Msa0177470:intron 35.0%
!! TCCTCTAAAGTATGAATGGT+AGG + chr1_4:64426848-64426867 Msa0177470:intron 35.0%
AAAGGATATCTCTAGACTGT+AGG - chr1_4:64426880-64426899 None:intergenic 35.0%
AAAATATATCGCGTTCTACC+AGG + chr1_4:64427079-64427098 Msa0177470:intron 35.0%
TGAGGTTGAGTTAGAAAGAT+CGG + chr1_4:64427227-64427246 Msa0177470:intron 35.0%
ACACACAAAAGATCATGGAT+CGG + chr1_4:64427428-64427447 Msa0177470:intron 35.0%
! CAAAAAAGTTTGATTCGACC+AGG - chr1_4:64427509-64427528 None:intergenic 35.0%
CTGGACATTTATAGTTGAGT+CGG + chr1_4:64427639-64427658 Msa0177470:intron 35.0%
ACATTTATAGTTGAGTCGGT+CGG + chr1_4:64427643-64427662 Msa0177470:intron 35.0%
TCGTTCATGAGCTTCATAAT+TGG + chr1_4:64427748-64427767 Msa0177470:intron 35.0%
TTTCCCATTGTAGTAAACTG+CGG + chr1_4:64427930-64427949 Msa0177470:intron 35.0%
TCGGACTATATAACCTGAAT+TGG - chr1_4:64428178-64428197 None:intergenic 35.0%
!! GGATGAGAAGGTATTTATAG+GGG - chr1_4:64428393-64428412 None:intergenic 35.0%
TCAACAAAATCTAGAGAGTG+AGG - chr1_4:64428554-64428573 None:intergenic 35.0%
TAGAAAAAGATGAGTCTACG+TGG + chr1_4:64428602-64428621 Msa0177470:intron 35.0%
ACTGTGAAACTTGATAGACA+AGG + chr1_4:64428867-64428886 Msa0177470:intron 35.0%
!! TTTTCAAGGACAAATGGGTA+AGG + chr1_4:64429050-64429069 Msa0177470:CDS 35.0%
CTTCGAGTAAGAAATGTCAA+TGG - chr1_4:64429274-64429293 None:intergenic 35.0%
CTTATCCTTGATTCCTGTAT+TGG + chr1_4:64429396-64429415 Msa0177470:CDS 35.0%
!! TTTTTGCTATCTTGAGCAGA+TGG + chr1_4:64429857-64429876 Msa0177470:intron 35.0%
TCATCCTATTTGAAGAAGGT+TGG + chr1_4:64422208-64422227 Msa0177470:five_prime_UTR 35.0%
ATAGCCAACCTTCTTCAAAT+AGG - chr1_4:64422215-64422234 None:intergenic 35.0%
! GAACAAATGGAACGTTTTCT+GGG - chr1_4:64429962-64429981 None:intergenic 35.0%
! AACTTGTAGACATTCTGAAG+CGG - chr1_4:64430120-64430139 None:intergenic 35.0%
CTTCAGAATGTCTACAAGTT+TGG + chr1_4:64430120-64430139 Msa0177470:CDS 35.0%
ATTAAATCTCACATAGTCGC+CGG - chr1_4:64430316-64430335 None:intergenic 35.0%
TGTTGAGAACGTTGATGTTA+AGG + chr1_4:64430335-64430354 Msa0177470:CDS 35.0%
GACTTGAGATGTAAAGTTAG+CGG - chr1_4:64430415-64430434 None:intergenic 35.0%
!! AGCTTGTTACCAAGATTGAT+AGG + chr1_4:64430523-64430542 Msa0177470:CDS 35.0%
TCACCATTCATCAGGAATTT+GGG - chr1_4:64430576-64430595 None:intergenic 35.0%
ATCACCATTCATCAGGAATT+TGG - chr1_4:64430577-64430596 None:intergenic 35.0%
TCATTCCTTGCTACTCAACT+AGG + chr1_4:64420613-64420632 Msa0177470:five_prime_UTR 40.0%
CATTCCTTGCTACTCAACTA+GGG + chr1_4:64420614-64420633 Msa0177470:five_prime_UTR 40.0%
! TTATGGATTATGGAGATGCG+GGG - chr1_4:64421330-64421349 None:intergenic 40.0%
CTCTTAAGTCCAAATGGGTA+AGG + chr1_4:64421545-64421564 Msa0177470:five_prime_UTR 40.0%
AGTCCAAATGGGTAAGGAAA+AGG + chr1_4:64421551-64421570 Msa0177470:five_prime_UTR 40.0%
! GAACCTTTTCCTTACCCATT+TGG - chr1_4:64421557-64421576 None:intergenic 40.0%
CACATCAACATTGTGGTCAT+TGG + chr1_4:64421576-64421595 Msa0177470:five_prime_UTR 40.0%
AATGACAGTGCAGTAGTACT+TGG - chr1_4:64421808-64421827 None:intergenic 40.0%
TTAATGAAATCCCTGTGTCC+GGG - chr1_4:64421837-64421856 None:intergenic 40.0%
CTTAATGAAATCCCTGTGTC+CGG - chr1_4:64421838-64421857 None:intergenic 40.0%
!! CTCATCATTGATTCCACTAC+TGG + chr1_4:64421897-64421916 Msa0177470:five_prime_UTR 40.0%
!! ATCATTGATTCCACTACTGG+TGG + chr1_4:64421900-64421919 Msa0177470:five_prime_UTR 40.0%
CTGACCATCCTTAGAAATAC+CGG - chr1_4:64421934-64421953 None:intergenic 40.0%
AATGATCTGCTGTTGCAACA+AGG + chr1_4:64421998-64422017 Msa0177470:five_prime_UTR 40.0%
TGCCATCTATCTTGAACAGA+TGG + chr1_4:64422129-64422148 Msa0177470:intron 40.0%
! TATCTACCCTTGGAGTACTT+GGG - chr1_4:64422166-64422185 None:intergenic 40.0%
! ATATCTACCCTTGGAGTACT+TGG - chr1_4:64422167-64422186 None:intergenic 40.0%
ATTCCATTTGTTCCCATCTC+TGG + chr1_4:64422247-64422266 Msa0177470:five_prime_UTR 40.0%
AAACCAGAGATGGGAACAAA+TGG - chr1_4:64422253-64422272 None:intergenic 40.0%
TACAAACCTTGACTGGTACA+AGG + chr1_4:64422300-64422319 Msa0177470:five_prime_UTR 40.0%
ACAAACCTTGACTGGTACAA+GGG + chr1_4:64422301-64422320 Msa0177470:five_prime_UTR 40.0%
!! AGGCTCATTGATTTGGTCAA+GGG - chr1_4:64422344-64422363 None:intergenic 40.0%
!! TAGGCTCATTGATTTGGTCA+AGG - chr1_4:64422345-64422364 None:intergenic 40.0%
ACCAAATCAATGAGCCTAAG+AGG + chr1_4:64422347-64422366 Msa0177470:five_prime_UTR 40.0%
ATCTTGTAGACATCCTGTAG+TGG - chr1_4:64422397-64422416 None:intergenic 40.0%
CTACAGGATGTCTACAAGAT+TGG + chr1_4:64422397-64422416 Msa0177470:five_prime_UTR 40.0%
GTCTACAAGATTGGAGGAAT+TGG + chr1_4:64422406-64422425 Msa0177470:five_prime_UTR 40.0%
!! TGGTGTCATAAAACCTGGAA+TGG + chr1_4:64422456-64422475 Msa0177470:five_prime_UTR 40.0%
TTAAATCCCACATTGTCACC+AGG - chr1_4:64422562-64422581 None:intergenic 40.0%
TGTAAAGTTGGCAGATTCCT+TGG - chr1_4:64422653-64422672 None:intergenic 40.0%
GTGATCATAATGAATCACCC+TGG + chr1_4:64422679-64422698 Msa0177470:five_prime_UTR 40.0%
AGCAAACTTGACAGCAATGT+GGG - chr1_4:64422749-64422768 None:intergenic 40.0%
ACTAAGATTGATAGGCGTTC+TGG + chr1_4:64422778-64422797 Msa0177470:five_prime_UTR 40.0%
TTCTGGTAAGGAGATTGAGA+AGG + chr1_4:64422795-64422814 Msa0177470:five_prime_UTR 40.0%
GAGCCCAAATTCTTGAAGAA+TGG + chr1_4:64422817-64422836 Msa0177470:five_prime_UTR 40.0%
! TTCTTGAAGAATGGTGATGC+TGG + chr1_4:64422826-64422845 Msa0177470:five_prime_UTR 40.0%
TTCTCTGAATATCCTCCACT+CGG + chr1_4:64422892-64422911 Msa0177470:five_prime_UTR 40.0%
GCATGTCTCTAACAGCAAAA+CGG - chr1_4:64422918-64422937 None:intergenic 40.0%
! CTTCTTCTTCAATGCTGACT+TGG - chr1_4:64423010-64423029 None:intergenic 40.0%
AGTGAATAGATCATCCTGCT+CGG - chr1_4:64423037-64423056 None:intergenic 40.0%
AGCAGGATGATCTATTCACT+TGG + chr1_4:64423037-64423056 Msa0177470:exon 40.0%
GCAGGATGATCTATTCACTT+GGG + chr1_4:64423038-64423057 Msa0177470:exon 40.0%
!! TTTAAGTTTTTGCTGGGGCA+TGG + chr1_4:64423281-64423300 Msa0177470:intron 40.0%
! GGCATGGTTCTATATGGTTT+AGG + chr1_4:64423297-64423316 Msa0177470:intron 40.0%
TGAATTGAACCAAGGTCTTG+CGG - chr1_4:64423467-64423486 None:intergenic 40.0%
GCTCCCAACTATGAAATTGA+TGG + chr1_4:64423596-64423615 Msa0177470:intron 40.0%
TTGAGTTCCTCAAGCATCAA+TGG + chr1_4:64424656-64424675 Msa0177470:intron 40.0%
! AGAAGACTTGTGATGATGTG+TGG + chr1_4:64424679-64424698 Msa0177470:intron 40.0%
ACGAGATTCCTTATTCCCTA+CGG + chr1_4:64425194-64425213 Msa0177470:intron 40.0%
!!! AGTGTTTTTGGTTTGCCGTA+GGG - chr1_4:64425212-64425231 None:intergenic 40.0%
AATGGAGGAGTAAGGTTGAA+TGG - chr1_4:64425361-64425380 None:intergenic 40.0%
ATCATTGCCATCCATTAACC+TGG + chr1_4:64425506-64425525 Msa0177470:intron 40.0%
AGCAAGTTTAGGAGATACCT+TGG - chr1_4:64425534-64425553 None:intergenic 40.0%
! AGAGTGTCACTATTGAGAGA+AGG - chr1_4:64425616-64425635 None:intergenic 40.0%
! GCATCCATTGTTGTTATGGT+TGG + chr1_4:64425648-64425667 Msa0177470:intron 40.0%
! ACAAGGTATTATGGTGGGAA+CGG + chr1_4:64425673-64425692 Msa0177470:intron 40.0%
CGTAGAATTTGCATTGGAGT+TGG - chr1_4:64426033-64426052 None:intergenic 40.0%
AGCCACGACTTCATTTAATG+AGG - chr1_4:64426102-64426121 None:intergenic 40.0%
CTACATGATAAGTGGGGAAT+TGG - chr1_4:64426139-64426158 None:intergenic 40.0%
ATTCCCCACTTATCATGTAG+TGG + chr1_4:64426139-64426158 Msa0177470:intron 40.0%
AGGTCCACTACATGATAAGT+GGG - chr1_4:64426146-64426165 None:intergenic 40.0%
ATGAAACTCGTCCAGTTGTT+AGG - chr1_4:64426215-64426234 None:intergenic 40.0%
TATGCAAGACTGCACATTGA+TGG - chr1_4:64426238-64426257 None:intergenic 40.0%
TGAACTGAAAGATATACCGG+TGG - chr1_4:64426283-64426302 None:intergenic 40.0%
CCCACCACAAACTATAACAT+AGG + chr1_4:64426321-64426340 Msa0177470:intron 40.0%
! CCCTATGTTATAGTTTGTGG+TGG - chr1_4:64426325-64426344 None:intergenic 40.0%
AACTATTATGCAGGATCAGC+AGG - chr1_4:64426369-64426388 None:intergenic 40.0%
GCTGGAGAAAACTATTATGC+AGG - chr1_4:64426378-64426397 None:intergenic 40.0%
!! GTGATTTTAGCACTTTTGGC+TGG - chr1_4:64426396-64426415 None:intergenic 40.0%
!! GTCGACTTTGATAATGTGGA+AGG - chr1_4:64426418-64426437 None:intergenic 40.0%
!! TGGAGTCGACTTTGATAATG+TGG - chr1_4:64426422-64426441 None:intergenic 40.0%
! TTATCAAAGTCGACTCCAAG+AGG + chr1_4:64426424-64426443 Msa0177470:intron 40.0%
GTCCCTTTCCTAAGTTAGTT+TGG - chr1_4:64426459-64426478 None:intergenic 40.0%
GCCTACCATTCATACTTTAG+AGG - chr1_4:64426852-64426871 None:intergenic 40.0%
!!! GAGTGACACCTCTTGTTTTA+CGG + chr1_4:64426966-64426985 Msa0177470:intron 40.0%
!!! AGTGACACCTCTTGTTTTAC+GGG + chr1_4:64426967-64426986 Msa0177470:intron 40.0%
! CAGGTGCTACGAAGAAATTA+AGG - chr1_4:64427490-64427509 None:intergenic 40.0%
CTTAATTTCTTCGTAGCACC+TGG + chr1_4:64427488-64427507 Msa0177470:intron 40.0%
TTCGAAATGACCAATCGAGT+TGG - chr1_4:64427686-64427705 None:intergenic 40.0%
GGTTTGATGTCACACTATCT+GGG - chr1_4:64427881-64427900 None:intergenic 40.0%
TGGTTTGATGTCACACTATC+TGG - chr1_4:64427882-64427901 None:intergenic 40.0%
TAGCCGCAGTTTACTACAAT+GGG - chr1_4:64427936-64427955 None:intergenic 40.0%
TTAGCCGCAGTTTACTACAA+TGG - chr1_4:64427937-64427956 None:intergenic 40.0%
! CGTTGCATCGATAGTTTATG+TGG - chr1_4:64428060-64428079 None:intergenic 40.0%
CATAAACTATCGATGCAACG+TGG + chr1_4:64428060-64428079 Msa0177470:intron 40.0%
ACTCATACTTTGTAGGGTGA+TGG - chr1_4:64428138-64428157 None:intergenic 40.0%
GCACAGTCTTAAACCAATTC+AGG + chr1_4:64428162-64428181 Msa0177470:intron 40.0%
AAAGTGGCCTGATAAGTCAA+GGG - chr1_4:64428303-64428322 None:intergenic 40.0%
GAAGTCTTCTTCAAGGCAAA+AGG - chr1_4:64428672-64428691 None:intergenic 40.0%
TGACATGGAAGTCTTCTTCA+AGG - chr1_4:64428679-64428698 None:intergenic 40.0%
! GTACTGAGCAGTTGATTCAA+AGG - chr1_4:64428842-64428861 None:intergenic 40.0%
AAGTTTGTAGATCAGGTGAC+CGG - chr1_4:64429130-64429149 None:intergenic 40.0%
TGAGAAAGAAGCTGCTGAAA+TGG + chr1_4:64429182-64429201 Msa0177470:CDS 40.0%
GAGAAAGAAGCTGCTGAAAT+GGG + chr1_4:64429183-64429202 Msa0177470:CDS 40.0%
AAGCACCAATACAGGAATCA+AGG - chr1_4:64429404-64429423 None:intergenic 40.0%
!! AGCTTCAAAAGCACCAATAC+AGG - chr1_4:64429412-64429431 None:intergenic 40.0%
!!! TTTTGAAGCTAGCATGTCCA+GGG + chr1_4:64429422-64429441 Msa0177470:CDS 40.0%
AATGATCTGCTGCTGTAACA+AGG + chr1_4:64429497-64429516 Msa0177470:intron 40.0%
AATCTCATCATACCTACCCT+TGG - chr1_4:64429898-64429917 None:intergenic 40.0%
TAGGTATGATGAGATTGTGG+AGG + chr1_4:64429902-64429921 Msa0177470:intron 40.0%
! GGAACAAATGGAACGTTTTC+TGG - chr1_4:64429963-64429982 None:intergenic 40.0%
AAACCAGAGATGGGAACAAA+TGG - chr1_4:64422253-64422272 None:intergenic 40.0%
TACAAACCTTGACTGGTACA+AGG + chr1_4:64422300-64422319 Msa0177470:five_prime_UTR 40.0%
ACAAACCTTGACTGGTACAA+GGG + chr1_4:64422301-64422320 Msa0177470:five_prime_UTR 40.0%
CAGAATGTCTACAAGTTTGG+AGG + chr1_4:64430123-64430142 Msa0177470:CDS 40.0%
GTCTACAAGTTTGGAGGAAT+TGG + chr1_4:64430129-64430148 Msa0177470:CDS 40.0%
TTAAATCTCACATAGTCGCC+GGG - chr1_4:64430315-64430334 None:intergenic 40.0%
GATGTTAAGGATCTCAAGAG+TGG + chr1_4:64430348-64430367 Msa0177470:CDS 40.0%
!! AGCCATTTTCAATCTTGCCA+GGG - chr1_4:64430452-64430471 None:intergenic 40.0%
!! TAGCCATTTTCAATCTTGCC+AGG - chr1_4:64430453-64430472 None:intergenic 40.0%
ATCACACTTGACAGCAATGT+GGG - chr1_4:64430502-64430521 None:intergenic 40.0%
AAGCCCAAATTCCTGATGAA+TGG + chr1_4:64430570-64430589 Msa0177470:CDS 40.0%
TTCTCTGAATATCCTCCACT+TGG + chr1_4:64422892-64422911 Msa0177470:five_prime_UTR 40.0%
GTGAAGAACGAACGGTAGTA+GGG - chr1_4:64420581-64420600 None:intergenic 45.0%
TGTGAAGAACGAACGGTAGT+AGG - chr1_4:64420582-64420601 None:intergenic 45.0%
GAAACCCTAGTTGAGTAGCA+AGG - chr1_4:64420621-64420640 None:intergenic 45.0%
ACCTTGTGACGAAGGAGAAA+AGG - chr1_4:64420659-64420678 None:intergenic 45.0%
CAATGGGGATGTAGCTCATA+TGG + chr1_4:64421258-64421277 Msa0177470:intron 45.0%
TTGATTTCCCAGAGTCGACA+TGG - chr1_4:64421602-64421621 None:intergenic 45.0%
CTTGTAGATCAAGTGACCAG+TGG - chr1_4:64421628-64421647 None:intergenic 45.0%
GGTCACTTGATCTACAAGCT+TGG + chr1_4:64421630-64421649 Msa0177470:five_prime_UTR 45.0%
CACTTGATCTACAAGCTTGG+AGG + chr1_4:64421633-64421652 Msa0177470:five_prime_UTR 45.0%
AGCGTTCATTCAAGTATGCC+TGG + chr1_4:64421709-64421728 Msa0177470:five_prime_UTR 45.0%
GCGTTCATTCAAGTATGCCT+GGG + chr1_4:64421710-64421729 Msa0177470:five_prime_UTR 45.0%
TCACCATTGACATTGCTCTC+TGG + chr1_4:64421769-64421788 Msa0177470:five_prime_UTR 45.0%
CTTCCAGAGAGCAATGTCAA+TGG - chr1_4:64421775-64421794 None:intergenic 45.0%
TAATGAAATCCCTGTGTCCG+GGG - chr1_4:64421836-64421855 None:intergenic 45.0%
ACAATCAGCTTGGGATGTTC+CGG - chr1_4:64421871-64421890 None:intergenic 45.0%
!!! ACTACTGGTGGTTTTGAAGC+CGG + chr1_4:64421912-64421931 Msa0177470:five_prime_UTR 45.0%
! GAAGCCGGTATTTCTAAGGA+TGG + chr1_4:64421927-64421946 Msa0177470:five_prime_UTR 45.0%
! AAGCAAGGAGAGCATGTTCA+CGG - chr1_4:64421959-64421978 None:intergenic 45.0%
TCACACCAAGAGTGAAAGCA+AGG - chr1_4:64421974-64421993 None:intergenic 45.0%
TACTACACCCAAGTACTCCA+AGG + chr1_4:64422156-64422175 Msa0177470:five_prime_UTR 45.0%
ACTACACCCAAGTACTCCAA+GGG + chr1_4:64422157-64422176 Msa0177470:five_prime_UTR 45.0%
!!! TGTTCCCATCTCTGGTTTTG+AGG + chr1_4:64422255-64422274 Msa0177470:five_prime_UTR 45.0%
!!! GTTCCCATCTCTGGTTTTGA+GGG + chr1_4:64422256-64422275 Msa0177470:five_prime_UTR 45.0%
TCTCCCTCAAAACCAGAGAT+GGG - chr1_4:64422262-64422281 None:intergenic 45.0%
ATCTCCCTCAAAACCAGAGA+TGG - chr1_4:64422263-64422282 None:intergenic 45.0%
! GCCTCTTAGGCTCATTGATT+TGG - chr1_4:64422351-64422370 None:intergenic 45.0%
AGACATCCTGTAGTGGTAGT+CGG - chr1_4:64422390-64422409 None:intergenic 45.0%
CAGGATGTCTACAAGATTGG+AGG + chr1_4:64422400-64422419 Msa0177470:five_prime_UTR 45.0%
!! GAGACTGGTGTCATAAAACC+TGG + chr1_4:64422451-64422470 Msa0177470:five_prime_UTR 45.0%
GCAAAAGTGACAACCATTCC+AGG - chr1_4:64422472-64422491 None:intergenic 45.0%
TTCAGTTGTCAGTCCAGTAG+GGG - chr1_4:64422494-64422513 None:intergenic 45.0%
CTTCAGTTGTCAGTCCAGTA+GGG - chr1_4:64422495-64422514 None:intergenic 45.0%
ACTTCAGTTGTCAGTCCAGT+AGG - chr1_4:64422496-64422515 None:intergenic 45.0%
GACAACTGAAGTCAAGTCTG+TGG + chr1_4:64422504-64422523 Msa0177470:five_prime_UTR 45.0%
CTGTTAAGGATCTCAAGCGT+GGG + chr1_4:64422596-64422615 Msa0177470:five_prime_UTR 45.0%
GTATGTTGCCTCAAACTCCA+AGG + chr1_4:64422618-64422637 Msa0177470:five_prime_UTR 45.0%
GAGCATAGCCATTTCCAATC+TGG - chr1_4:64422705-64422724 None:intergenic 45.0%
AAACTTGACAGCAATGTGGG+AGG - chr1_4:64422746-64422765 None:intergenic 45.0%
CAGCAAACTTGACAGCAATG+TGG - chr1_4:64422750-64422769 None:intergenic 45.0%
GATTGATAGGCGTTCTGGTA+AGG + chr1_4:64422783-64422802 Msa0177470:five_prime_UTR 45.0%
GAGAAAGTCTCAACCACCAT+GGG - chr1_4:64422877-64422896 None:intergenic 45.0%
AGAGAAAGTCTCAACCACCA+TGG - chr1_4:64422878-64422897 None:intergenic 45.0%
TAGAGACATGCGTCAAACTG+TGG + chr1_4:64422927-64422946 Msa0177470:five_prime_UTR 45.0%
!! AGAACTGGGTTCTAGATCGA+CGG + chr1_4:64423106-64423125 Msa0177470:intron 45.0%
GTAAGCAAGCAGTAAGTTCC+AGG + chr1_4:64423196-64423215 Msa0177470:intron 45.0%
TTGCGGATATGCTACTACCT+AGG - chr1_4:64423450-64423469 None:intergenic 45.0%
!! AGCTATTTGGTGGATTGGAG+AGG - chr1_4:64423772-64423791 None:intergenic 45.0%
TGCCTACCATTCGTACTTGT+TGG + chr1_4:64424469-64424488 Msa0177470:intron 45.0%
GCCTACCATTCGTACTTGTT+GGG + chr1_4:64424470-64424489 Msa0177470:intron 45.0%
ACCCAACAAGTACGAATGGT+AGG - chr1_4:64424474-64424493 None:intergenic 45.0%
! TACCATTCGTACTTGTTGGG+TGG + chr1_4:64424473-64424492 Msa0177470:intron 45.0%
!! GTACTTGTTGGGTGGACTAT+TGG + chr1_4:64424481-64424500 Msa0177470:intron 45.0%
ACGAGGAGACCAAACTTTGT+AGG - chr1_4:64426805-64426824 None:intergenic 45.0%
! ACTTCAAACGGTTGGTTACG+AGG - chr1_4:64424540-64424559 None:intergenic 45.0%
GTCTTCTCCATTGATGCTTG+AGG - chr1_4:64424666-64424685 None:intergenic 45.0%
!! TTGGTTTGCCGTAGGGAATA+AGG - chr1_4:64425205-64425224 None:intergenic 45.0%
!!! CAGTGTTTTTGGTTTGCCGT+AGG - chr1_4:64425213-64425232 None:intergenic 45.0%
! AGGCATCAAGGCAGTGTTTT+TGG - chr1_4:64425224-64425243 None:intergenic 45.0%
AGACAACATCGACATGTCTC+AGG - chr1_4:64425310-64425329 None:intergenic 45.0%
CATGTCGATGTTGTCTCTTG+CGG + chr1_4:64425314-64425333 Msa0177470:intron 45.0%
GAGTAAGGTTGAATGGTGGT+TGG - chr1_4:64425354-64425373 None:intergenic 45.0%
ATACCTTGGCACCAGGTTAA+TGG - chr1_4:64425520-64425539 None:intergenic 45.0%
GCTAAAAAGAGGGCCTTCAT+TGG - chr1_4:64425876-64425895 None:intergenic 45.0%
CCTTGGCGTAGAATTTGCAT+TGG - chr1_4:64426039-64426058 None:intergenic 45.0%
CCAATGCAAATTCTACGCCA+AGG + chr1_4:64426036-64426055 Msa0177470:intron 45.0%
GGCCTCATTAAATGAAGTCG+TGG + chr1_4:64426097-64426116 Msa0177470:intron 45.0%
CATGATAAGTGGGGAATTGG+AGG - chr1_4:64426136-64426155 None:intergenic 45.0%
GGTCCACTACATGATAAGTG+GGG - chr1_4:64426145-64426164 None:intergenic 45.0%
CAGGTCCACTACATGATAAG+TGG - chr1_4:64426147-64426166 None:intergenic 45.0%
GGAGATTTCCACCTAACAAC+TGG + chr1_4:64426201-64426220 Msa0177470:intron 45.0%
AAACTCGTCCAGTTGTTAGG+TGG - chr1_4:64426212-64426231 None:intergenic 45.0%
TATTATGCAGGATCAGCAGG+AGG - chr1_4:64426366-64426385 None:intergenic 45.0%
!! GTTTGGTTCTCTTCTCCTCT+TGG - chr1_4:64426442-64426461 None:intergenic 45.0%
!! GTTTGTTGTCTCGGAGATGA+TGG - chr1_4:64426508-64426527 None:intergenic 45.0%
TATCTCATGACACTGGTGCT+TGG - chr1_4:64426758-64426777 None:intergenic 45.0%
ACGAGGAGACCAAACTTTGT+CGG + chr1_4:64426805-64426824 Msa0177470:intron 45.0%
AAAACGGCCCGTAAAACAAG+AGG - chr1_4:64426977-64426996 None:intergenic 45.0%
!! TCTCCTAGCTTTACATGGCA+GGG - chr1_4:64427040-64427059 None:intergenic 45.0%
!! TTCTCCTAGCTTTACATGGC+AGG - chr1_4:64427041-64427060 None:intergenic 45.0%
TGCCATGTAAAGCTAGGAGA+AGG + chr1_4:64427040-64427059 Msa0177470:intron 45.0%
!! GTCCTTCTCCTAGCTTTACA+TGG - chr1_4:64427045-64427064 None:intergenic 45.0%
TATCGCGTTCTACCAGGTAA+TGG + chr1_4:64427085-64427104 Msa0177470:intron 45.0%
AAGTTGGACGCTTCCTTAGT+CGG - chr1_4:64427548-64427567 None:intergenic 45.0%
GGCTGAGTCGACAATTGATT+TGG + chr1_4:64427838-64427857 Msa0177470:intron 45.0%
! TGTCACACTATCTGGGTTGA+AGG - chr1_4:64427874-64427893 None:intergenic 45.0%
CTATTGTCCACACTCTGAGT+TGG - chr1_4:64428237-64428256 None:intergenic 45.0%
TCAGAGTGTGGACAATAGCT+TGG + chr1_4:64428239-64428258 Msa0177470:intron 45.0%
TTTGGGTCCCTTGACTTATC+AGG + chr1_4:64428293-64428312 Msa0177470:intron 45.0%
CAAAGTGGCCTGATAAGTCA+AGG - chr1_4:64428304-64428323 None:intergenic 45.0%
CTTCCATGTCACATTCAGAC+AGG + chr1_4:64428688-64428707 Msa0177470:intron 45.0%
ATGCCTGTCTGAATGTGACA+TGG - chr1_4:64428694-64428713 None:intergenic 45.0%
GGTCACCTGATCTACAAACT+TGG + chr1_4:64429129-64429148 Msa0177470:CDS 45.0%
CACCTGATCTACAAACTTGG+AGG + chr1_4:64429132-64429151 Msa0177470:CDS 45.0%
CACCTCCAAGTTTGTAGATC+AGG - chr1_4:64429137-64429156 None:intergenic 45.0%
AGACTTCAGTCAAGTATGCC+TGG + chr1_4:64429208-64429227 Msa0177470:CDS 45.0%
!!! CTTTTGAAGCTAGCATGTCC+AGG + chr1_4:64429421-64429440 Msa0177470:CDS 45.0%
! AGCAAGGAGAACTTGTTCCA+TGG - chr1_4:64429457-64429476 None:intergenic 45.0%
GTTCTCCTTGCTTTCACTCT+TGG + chr1_4:64429465-64429484 Msa0177470:CDS 45.0%
ATCTGCTGCTGTAACAAGGT+AGG + chr1_4:64429501-64429520 Msa0177470:intron 45.0%
GATGCCATTCAGTACTCCAA+GGG + chr1_4:64429879-64429898 Msa0177470:intron 45.0%
GGGTAGGTATGATGAGATTG+TGG + chr1_4:64429899-64429918 Msa0177470:intron 45.0%
GTTCCATTTGTTCCCATCTC+TGG + chr1_4:64429969-64429988 Msa0177470:intron 45.0%
!!! TGTTCCCATCTCTGGTTTTG+AGG + chr1_4:64422255-64422274 Msa0177470:five_prime_UTR 45.0%
!!! GTTCCCATCTCTGGTTTTGA+GGG + chr1_4:64422256-64422275 Msa0177470:five_prime_UTR 45.0%
TCTCCCTCAAAACCAGAGAT+GGG - chr1_4:64422262-64422281 None:intergenic 45.0%
ATCTCCCTCAAAACCAGAGA+TGG - chr1_4:64422263-64422282 None:intergenic 45.0%
!! AGGCTCGTTGATTTGGTCAA+GGG - chr1_4:64430067-64430086 None:intergenic 45.0%
!! TAGGCTCGTTGATTTGGTCA+AGG - chr1_4:64430068-64430087 None:intergenic 45.0%
ACCAAATCAACGAGCCTAAG+AGG + chr1_4:64430070-64430089 Msa0177470:CDS 45.0%
!! AGACATTCTGAAGCGGTAGT+CGG - chr1_4:64430113-64430132 None:intergenic 45.0%
AGGAATTGGAACTGTACCTG+TGG + chr1_4:64430143-64430162 Msa0177470:CDS 45.0%
GGAATTGGAACTGTACCTGT+GGG + chr1_4:64430144-64430163 Msa0177470:CDS 45.0%
TGGTGTCTTGAAACCTGGAA+TGG + chr1_4:64430179-64430198 Msa0177470:CDS 45.0%
TGTCTTGAAACCTGGAATGG+AGG + chr1_4:64430182-64430201 Msa0177470:CDS 45.0%
GAAAAAGTCACCTCCATTCC+AGG - chr1_4:64430195-64430214 None:intergenic 45.0%
TTTAGCTGTCAGTCCAGTAG+GGG - chr1_4:64430217-64430236 None:intergenic 45.0%
CTTTAGCTGTCAGTCCAGTA+GGG - chr1_4:64430218-64430237 None:intergenic 45.0%
ACTTTAGCTGTCAGTCCAGT+AGG - chr1_4:64430219-64430238 None:intergenic 45.0%
GGAGATGCACGATAAACCTA+TGG + chr1_4:64430248-64430267 Msa0177470:CDS 45.0%
GATGCACGATAAACCTATGG+TGG + chr1_4:64430251-64430270 Msa0177470:CDS 45.0%
! CGGAGGTTTTTCTGTGAACA+AGG - chr1_4:64430280-64430299 None:intergenic 45.0%
GTTCACAGAAAAACCTCCGA+CGG + chr1_4:64430281-64430300 Msa0177470:CDS 45.0%
CTATGTTGCCTCTAACTCCA+AGG + chr1_4:64430371-64430390 Msa0177470:CDS 45.0%
CACCCTGGCAAGATTGAAAA+TGG + chr1_4:64430447-64430466 Msa0177470:CDS 45.0%
CATCACACTTGACAGCAATG+TGG - chr1_4:64430503-64430522 None:intergenic 45.0%
ACCAAGATTGATAGGCGTTC+TGG + chr1_4:64430531-64430550 Msa0177470:CDS 45.0%
ACCAGAACGCCTATCAATCT+TGG - chr1_4:64422782-64422801 None:intergenic 45.0%
AGATTGATAGGCGTTCTGGT+AGG + chr1_4:64422782-64422801 Msa0177470:five_prime_UTR 45.0%
GATTGATAGGCGTTCTGGTA+GGG + chr1_4:64422783-64422802 Msa0177470:five_prime_UTR 45.0%
! TTCCTGATGAATGGTGATGC+TGG + chr1_4:64430579-64430598 Msa0177470:CDS 45.0%
TACCAGCATCACCATTCATC+AGG - chr1_4:64430584-64430603 None:intergenic 45.0%
GAGAAAGTCTCAACCACCAT+CGG - chr1_4:64422877-64422896 None:intergenic 45.0%
!! ACTTGGCCGTTTTACTGTCA+GGG + chr1_4:64430662-64430681 Msa0177470:CDS 45.0%
GCTTGTCCCTGACAGTAAAA+CGG - chr1_4:64430671-64430690 None:intergenic 45.0%
!!! TTAATTTATTTTTACAAAAT+CGG + chr1_4:64424344-64424363 Msa0177470:intron 5.0%
! GCCTTTTCTCCTTCGTCACA+AGG + chr1_4:64420655-64420674 Msa0177470:five_prime_UTR 50.0%
GGTTCGTTACCTTGTGACGA+AGG - chr1_4:64420667-64420686 None:intergenic 50.0%
CACTTAGCATGCGAGAGGTA+CGG + chr1_4:64421295-64421314 Msa0177470:intron 50.0%
! ACTTAGCATGCGAGAGGTAC+GGG + chr1_4:64421296-64421315 Msa0177470:intron 50.0%
!! TCATTGGCCATGTCGACTCT+GGG + chr1_4:64421592-64421611 Msa0177470:five_prime_UTR 50.0%
TCTGGGAAATCAACCACCAC+TGG + chr1_4:64421609-64421628 Msa0177470:five_prime_UTR 50.0%
GTAGATCAAGTGACCAGTGG+TGG - chr1_4:64421625-64421644 None:intergenic 50.0%
TTGACAAGCGTGTCATCGAG+AGG + chr1_4:64421658-64421677 Msa0177470:five_prime_UTR 50.0%
GTTCAGCCTTGAGCTTGTCA+AGG - chr1_4:64421737-64421756 None:intergenic 50.0%
CTCAAGGCTGAACGTGAAAG+AGG + chr1_4:64421744-64421763 Msa0177470:five_prime_UTR 50.0%
AATGAAATCCCTGTGTCCGG+GGG - chr1_4:64421835-64421854 None:intergenic 50.0%
GAGAACGGCACAATCAGCTT+GGG - chr1_4:64421880-64421899 None:intergenic 50.0%
TGAGAACGGCACAATCAGCT+TGG - chr1_4:64421881-64421900 None:intergenic 50.0%
GGCTTCAAAACCACCAGTAG+TGG - chr1_4:64421913-64421932 None:intergenic 50.0%
! AGCAAGGAGAGCATGTTCAC+GGG - chr1_4:64421958-64421977 None:intergenic 50.0%
GCTCTCCTTGCTTTCACTCT+TGG + chr1_4:64421966-64421985 Msa0177470:five_prime_UTR 50.0%
AGCGCTCTACAAACCTTGAC+TGG + chr1_4:64422293-64422312 Msa0177470:five_prime_UTR 50.0%
TTGGACCCTTGTACCAGTCA+AGG - chr1_4:64422309-64422328 None:intergenic 50.0%
CAAGGGTCCAACTCTTCTTG+AGG + chr1_4:64422318-64422337 Msa0177470:five_prime_UTR 50.0%
TCAAGGGCCTCAAGAAGAGT+TGG - chr1_4:64422328-64422347 None:intergenic 50.0%
ATCCTGTAGTGGTAGTCGGA+GGG - chr1_4:64422386-64422405 None:intergenic 50.0%
AGGAATTGGAACTGTGCCTG+TGG + chr1_4:64422420-64422439 Msa0177470:five_prime_UTR 50.0%
GGAATTGGAACTGTGCCTGT+GGG + chr1_4:64422421-64422440 Msa0177470:five_prime_UTR 50.0%
GAATTGGAACTGTGCCTGTG+GGG + chr1_4:64422422-64422441 Msa0177470:five_prime_UTR 50.0%
!!! GTTGTCACTTTTGCCCCTAC+TGG + chr1_4:64422478-64422497 Msa0177470:five_prime_UTR 50.0%
GCATCATGAAGCTCTCACAG+AGG + chr1_4:64422531-64422550 Msa0177470:five_prime_UTR 50.0%
TCCCACATTGTCACCAGGAA+GGG - chr1_4:64422557-64422576 None:intergenic 50.0%
ATCCCACATTGTCACCAGGA+AGG - chr1_4:64422558-64422577 None:intergenic 50.0%
GCTGTTAAGGATCTCAAGCG+TGG + chr1_4:64422595-64422614 Msa0177470:five_prime_UTR 50.0%
TGGGTCATCCTTGGAGTTTG+AGG - chr1_4:64422629-64422648 None:intergenic 50.0%
AGTTGGCAGATTCCTTGGCT+GGG - chr1_4:64422648-64422667 None:intergenic 50.0%
AAGTTGGCAGATTCCTTGGC+TGG - chr1_4:64422649-64422668 None:intergenic 50.0%
ATGAATCACCCTGGCCAGAT+TGG + chr1_4:64422688-64422707 Msa0177470:five_prime_UTR 50.0%
AGCCATTTCCAATCTGGCCA+GGG - chr1_4:64422699-64422718 None:intergenic 50.0%
TAGCCATTTCCAATCTGGCC+AGG - chr1_4:64422700-64422719 None:intergenic 50.0%
ATGCGTCAAACTGTGGCTGT+TGG + chr1_4:64422934-64422953 Msa0177470:five_prime_UTR 50.0%
TGCGTCAAACTGTGGCTGTT+GGG + chr1_4:64422935-64422954 Msa0177470:five_prime_UTR 50.0%
CATCAAGGCTGTGGAGAAGA+AGG + chr1_4:64422960-64422979 Msa0177470:five_prime_UTR 50.0%
GTCTGCTTAAGTCCTCCACT+GGG - chr1_4:64422988-64423007 None:intergenic 50.0%
GAAGAAGAAGTGAACCGAGC+AGG + chr1_4:64423020-64423039 Msa0177470:five_prime_UTR 50.0%
GAAACAGAGTCAGCAAGTCC+TGG - chr1_4:64423217-64423236 None:intergenic 50.0%
! TGCTGGGGCATGGTTCTATA+TGG + chr1_4:64423291-64423310 Msa0177470:intron 50.0%
CCTAGGCCACAAAGTCATCT+TGG - chr1_4:64423433-64423452 None:intergenic 50.0%
CCAAGATGACTTTGTGGCCT+AGG + chr1_4:64423430-64423449 Msa0177470:intron 50.0%
GTAGCATATCCGCAAGACCT+TGG + chr1_4:64423455-64423474 Msa0177470:intron 50.0%
GTCCACCCAACAAGTACGAA+TGG - chr1_4:64424478-64424497 None:intergenic 50.0%
TACTAGGAGGTTGCTGCACA+AGG + chr1_4:64424746-64424765 Msa0177470:intron 50.0%
GGAGGAGTAAGGTTGAATGG+TGG - chr1_4:64425358-64425377 None:intergenic 50.0%
GAAGGAACTCTTGTTGCTCG+CGG - chr1_4:64425472-64425491 None:intergenic 50.0%
CTTGGCACCAGGTTAATGGA+TGG - chr1_4:64425516-64425535 None:intergenic 50.0%
! CATCCATTAACCTGGTGCCA+AGG + chr1_4:64425514-64425533 Msa0177470:intron 50.0%
TTAGGAGATACCTTGGCACC+AGG - chr1_4:64425527-64425546 None:intergenic 50.0%
! TATGGTGGGAACGGCACAAA+AGG + chr1_4:64425682-64425701 Msa0177470:intron 50.0%
TTCAGACTCGGCTGAAGGTA+TGG - chr1_4:64426069-64426088 None:intergenic 50.0%
AGCCGAGTCTGAATCTGGTA+CGG + chr1_4:64426076-64426095 Msa0177470:intron 50.0%
!! GTTTGTGGTGGGCCAGAAAT+AGG - chr1_4:64426313-64426332 None:intergenic 50.0%
AGGGACCCAACATAAAAGCG+TGG + chr1_4:64426473-64426492 Msa0177470:intron 50.0%
CGAGGAGACCAAACTTTGTC+GGG + chr1_4:64426806-64426825 Msa0177470:intron 50.0%
CATTGCAGCCCGACAAAGTT+TGG - chr1_4:64426817-64426836 None:intergenic 50.0%
CAAACTTTGTCGGGCTGCAA+TGG + chr1_4:64426815-64426834 Msa0177470:intron 50.0%
ATGCCCTGCCATGTAAAGCT+AGG + chr1_4:64427034-64427053 Msa0177470:intron 50.0%
ATTCTCACGTCGTCGTCGTA+TGG + chr1_4:64427611-64427630 Msa0177470:intron 50.0%
TTCTCACGTCGTCGTCGTAT+GGG + chr1_4:64427612-64427631 Msa0177470:intron 50.0%
TGAGTCGGTCGGATCTTTCA+AGG + chr1_4:64427654-64427673 Msa0177470:intron 50.0%
!! AAGGAAGCGTCCAACTCGAT+TGG + chr1_4:64427673-64427692 Msa0177470:intron 50.0%
! TTGGACGCTTCTAGCTGAGT+CGG + chr1_4:64427767-64427786 Msa0177470:intron 50.0%
AGAGACACAAAGAGGGTGGA+CGG - chr1_4:64427816-64427835 None:intergenic 50.0%
CAGCCACAGAGACACAAAGA+GGG - chr1_4:64427823-64427842 None:intergenic 50.0%
TCAGCCACAGAGACACAAAG+AGG - chr1_4:64427824-64427843 None:intergenic 50.0%
! ATCTGGGTTGAAGGATCAGC+TGG - chr1_4:64427865-64427884 None:intergenic 50.0%
TTCCGAACCAACTCAGAGTG+TGG + chr1_4:64428227-64428246 Msa0177470:intron 50.0%
!! GTCCACACTCTGAGTTGGTT+CGG - chr1_4:64428232-64428251 None:intergenic 50.0%
! TGTTGCCTTTCTGAGAGACG+TGG + chr1_4:64428646-64428665 Msa0177470:intron 50.0%
AAAGGCCACGTCTCTCAGAA+AGG - chr1_4:64428654-64428673 None:intergenic 50.0%
!! TCATTGGCGATGTCGACTCT+GGG + chr1_4:64429091-64429110 Msa0177470:CDS 50.0%
TCTGGGAAGTCAACTACCAC+CGG + chr1_4:64429108-64429127 Msa0177470:CDS 50.0%
TTTGTAGATCAGGTGACCGG+TGG - chr1_4:64429127-64429146 None:intergenic 50.0%
CTTGAGCTTGTCAAGGATCC+AGG - chr1_4:64429229-64429248 None:intergenic 50.0%
CTGGATCCTTGACAAGCTCA+AGG + chr1_4:64429227-64429246 Msa0177470:CDS 50.0%
GTTCAGCCTTGAGCTTGTCA+AGG - chr1_4:64421737-64421756 None:intergenic 50.0%
CTCAAGGCTGAACGTGAAAG+AGG + chr1_4:64421744-64421763 Msa0177470:five_prime_UTR 50.0%
TGCACTGTCATTGATGTCCC+TGG + chr1_4:64429315-64429334 Msa0177470:CDS 50.0%
! GGAGAACTTGTTCCATGGTC+TGG - chr1_4:64429452-64429471 None:intergenic 50.0%
TCACGCCAAGAGTGAAAGCA+AGG - chr1_4:64429473-64429492 None:intergenic 50.0%
GGATGCCATTCAGTACTCCA+AGG + chr1_4:64429878-64429897 Msa0177470:intron 50.0%
!! CCTACCCTTGGAGTACTGAA+TGG - chr1_4:64429886-64429905 None:intergenic 50.0%
CCATTCAGTACTCCAAGGGT+AGG + chr1_4:64429883-64429902 Msa0177470:intron 50.0%
AGCGCTCTACAAACCTTGAC+TGG + chr1_4:64422293-64422312 Msa0177470:five_prime_UTR 50.0%
TTGGACCCTTGTACCAGTCA+AGG - chr1_4:64422309-64422328 None:intergenic 50.0%
AAGGGTCCAAACCCTTCTTG+AGG + chr1_4:64430041-64430060 Msa0177470:intron 50.0%
TTGGTCAAGGGCCTCAAGAA+GGG - chr1_4:64422332-64422351 None:intergenic 50.0%
TTTGGTCAAGGGCCTCAAGA+AGG - chr1_4:64422333-64422352 None:intergenic 50.0%
! GCCTCTTAGGCTCGTTGATT+TGG - chr1_4:64430074-64430093 None:intergenic 50.0%
!! ATTCTGAAGCGGTAGTCGGA+GGG - chr1_4:64430109-64430128 None:intergenic 50.0%
GAGACTGGTGTCTTGAAACC+TGG + chr1_4:64430174-64430193 Msa0177470:CDS 50.0%
!! GAGGTGACTTTTTCCCCTAC+TGG + chr1_4:64430201-64430220 Msa0177470:CDS 50.0%
GACAGCTAAAGTCACGTCTG+TGG + chr1_4:64430227-64430246 Msa0177470:CDS 50.0%
TGGGTCATCCTTGGAGTTAG+AGG - chr1_4:64430382-64430401 None:intergenic 50.0%
TGTAAAGTTAGCGGCCTCCT+TGG - chr1_4:64430406-64430425 None:intergenic 50.0%
ACACTTGACAGCAATGTGGG+AGG - chr1_4:64430499-64430518 None:intergenic 50.0%
ACAGTAAAACGGCCAAGTGG+AGG - chr1_4:64430660-64430679 None:intergenic 50.0%
CTGACAGTAAAACGGCCAAG+TGG - chr1_4:64430663-64430682 None:intergenic 50.0%
!! CACTTGGCCGTTTTACTGTC+AGG + chr1_4:64430661-64430680 Msa0177470:CDS 50.0%
AAGCGTCAAACTGTGGCTGT+TGG + chr1_4:64430687-64430706 Msa0177470:CDS 50.0%
!! TGTGGCTGTTGGTGTCATCA+CGG + chr1_4:64430698-64430717 Msa0177470:CDS 50.0%
CGCATCACTTAGCATGCGAG+AGG + chr1_4:64421290-64421309 Msa0177470:intron 55.0%
! CTTAGCATGCGAGAGGTACG+GGG + chr1_4:64421297-64421316 Msa0177470:intron 55.0%
!! GTCATTGGCCATGTCGACTC+TGG + chr1_4:64421591-64421610 Msa0177470:five_prime_UTR 55.0%
CTTGAGCTTGTCAAGGACCC+AGG - chr1_4:64421730-64421749 None:intergenic 55.0%
CTGGGTCCTTGACAAGCTCA+AGG + chr1_4:64421728-64421747 Msa0177470:five_prime_UTR 55.0%
TGCACTGTCATTGATGCCCC+CGG + chr1_4:64421816-64421835 Msa0177470:five_prime_UTR 55.0%
GGCTTGTCTGAAGGCCTCTT+AGG - chr1_4:64422364-64422383 None:intergenic 55.0%
TCCTGTAGTGGTAGTCGGAG+GGG - chr1_4:64422385-64422404 None:intergenic 55.0%
CATCCTGTAGTGGTAGTCGG+AGG - chr1_4:64422387-64422406 None:intergenic 55.0%
GCCCTTCCTGGTGACAATGT+GGG + chr1_4:64422553-64422572 Msa0177470:five_prime_UTR 55.0%
TTCCTTGGCTGGGTCATCCT+TGG - chr1_4:64422638-64422657 None:intergenic 55.0%
CACCCTGGCCAGATTGGAAA+TGG + chr1_4:64422694-64422713 Msa0177470:five_prime_UTR 55.0%
GAGGTGTGGCAGTCAAGAAC+AGG - chr1_4:64422727-64422746 None:intergenic 55.0%
TGACAGCAATGTGGGAGGTG+TGG - chr1_4:64422741-64422760 None:intergenic 55.0%
GATGATTCCCACCAAGCCCA+TGG + chr1_4:64422858-64422877 Msa0177470:five_prime_UTR 55.0%
! TCAACCACCATGGGCTTGGT+GGG - chr1_4:64422868-64422887 None:intergenic 55.0%
AGTCTCAACCACCATGGGCT+TGG - chr1_4:64422872-64422891 None:intergenic 55.0%
CTAACAGCAAAACGGCCGAG+TGG - chr1_4:64422910-64422929 None:intergenic 55.0%
GCGTCAAACTGTGGCTGTTG+GGG + chr1_4:64422936-64422955 Msa0177470:five_prime_UTR 55.0%
TGTGGCTGTTGGGGTCATCA+AGG + chr1_4:64422945-64422964 Msa0177470:five_prime_UTR 55.0%
TGTTGGGGTCATCAAGGCTG+TGG + chr1_4:64422951-64422970 Msa0177470:five_prime_UTR 55.0%
GTGGAGAAGAAGGATCCCAG+TGG + chr1_4:64422970-64422989 Msa0177470:five_prime_UTR 55.0%
GAGAAGAAGGATCCCAGTGG+AGG + chr1_4:64422973-64422992 Msa0177470:five_prime_UTR 55.0%
GGTCTGCTTAAGTCCTCCAC+TGG - chr1_4:64422989-64423008 None:intergenic 55.0%
!! ACTGGGTTCTAGATCGACGG+TGG + chr1_4:64423109-64423128 Msa0177470:intron 55.0%
! GAAGGTATGGCTATGCGCCT+TGG - chr1_4:64426056-64426075 None:intergenic 55.0%
CCAGATTCAGACTCGGCTGA+AGG - chr1_4:64426074-64426093 None:intergenic 55.0%
CCTTCAGCCGAGTCTGAATC+TGG + chr1_4:64426071-64426090 Msa0177470:intron 55.0%
GGCCGTACCAGATTCAGACT+CGG - chr1_4:64426081-64426100 None:intergenic 55.0%
TCGTCGTCGTATGGGTGAAC+TGG + chr1_4:64427620-64427639 Msa0177470:intron 55.0%
! CTTCTAGCTGAGTCGGTCGA+TGG + chr1_4:64427774-64427793 Msa0177470:intron 55.0%
CCACAGAGACACAAAGAGGG+TGG - chr1_4:64427820-64427839 None:intergenic 55.0%
CCACCCTCTTTGTGTCTCTG+TGG + chr1_4:64427817-64427836 Msa0177470:intron 55.0%
!! GTCATTGGCGATGTCGACTC+TGG + chr1_4:64429090-64429109 Msa0177470:CDS 55.0%
GAAGCTAGCATGTCCAGGGA+TGG + chr1_4:64429426-64429445 Msa0177470:CDS 55.0%
CAAGGGCCTCAAGAAGGGTT+TGG - chr1_4:64430050-64430069 None:intergenic 55.0%
GGCTTGTCTGAAGGCCTCTT+AGG - chr1_4:64422364-64422383 None:intergenic 55.0%
!! TTCTGAAGCGGTAGTCGGAG+GGG - chr1_4:64430108-64430127 None:intergenic 55.0%
!! CATTCTGAAGCGGTAGTCGG+AGG - chr1_4:64430110-64430129 None:intergenic 55.0%
! GTGAACAAGGCGTCCACCAT+AGG - chr1_4:64430267-64430286 None:intergenic 55.0%
ATCTCACATAGTCGCCGGGA+AGG - chr1_4:64430311-64430330 None:intergenic 55.0%
GTCGTCGTCATGAATCACCC+TGG + chr1_4:64430432-64430451 Msa0177470:CDS 55.0%
GAGGTGTGGCAGTGAAGAAC+AGG - chr1_4:64430480-64430499 None:intergenic 55.0%
TGACAGCAATGTGGGAGGTG+TGG - chr1_4:64422741-64422760 None:intergenic 55.0%
GATGATTCCCACCATGCCGA+TGG + chr1_4:64430611-64430630 Msa0177470:CDS 55.0%
TCAACCACCATCGGCATGGT+GGG - chr1_4:64430621-64430640 None:intergenic 55.0%
AGTCTCAACCACCATCGGCA+TGG - chr1_4:64430625-64430644 None:intergenic 55.0%
CAGGGACAAGCGTCAAACTG+TGG + chr1_4:64430680-64430699 Msa0177470:CDS 55.0%
!! TGTTGGTGTCATCACGGCTG+TGG + chr1_4:64430704-64430723 Msa0177470:CDS 55.0%
CATCACGGCTGTGGAGAAGA+AGG + chr1_4:64430713-64430732 Msa0177470:CDS 55.0%
GTGGAGAAGAAGGATCCCAG+TGG + chr1_4:64422970-64422989 Msa0177470:five_prime_UTR 55.0%
GAGAAGAAGGATCCCAGTGG+AGG + chr1_4:64422973-64422992 Msa0177470:five_prime_UTR 55.0%
TCATTGATGCCCCCGGACAC+AGG + chr1_4:64421823-64421842 Msa0177470:five_prime_UTR 60.0%
CATTGATGCCCCCGGACACA+GGG + chr1_4:64421824-64421843 Msa0177470:five_prime_UTR 60.0%
AGTCGGAGGGGCTTGTCTGA+AGG - chr1_4:64422373-64422392 None:intergenic 60.0%
GGCCCTTCCTGGTGACAATG+TGG + chr1_4:64422552-64422571 Msa0177470:five_prime_UTR 60.0%
CTCCAAGGATGACCCAGCCA+AGG + chr1_4:64422633-64422652 Msa0177470:five_prime_UTR 60.0%
GATTCCCACCAAGCCCATGG+TGG + chr1_4:64422861-64422880 Msa0177470:five_prime_UTR 60.0%
CTCAACCACCATGGGCTTGG+TGG - chr1_4:64422869-64422888 None:intergenic 60.0%
ACAGCAAAACGGCCGAGTGG+AGG - chr1_4:64422907-64422926 None:intergenic 60.0%
TGCTAGGAGGCTGCTGCACA+AGG - chr1_4:64426549-64426568 None:intergenic 60.0%
CTGAGTCGGTCGATGGTCGT+CGG + chr1_4:64427781-64427800 Msa0177470:intron 60.0%
TTCCATGGTCTGGCCATCCC+TGG - chr1_4:64429442-64429461 None:intergenic 60.0%
AGTCGGAGGGGCTTGTCTGA+AGG - chr1_4:64422373-64422392 None:intergenic 60.0%
CCAGTCTCAACACGTCCCAC+AGG - chr1_4:64430162-64430181 None:intergenic 60.0%
CCTGTGGGACGTGTTGAGAC+TGG + chr1_4:64430159-64430178 Msa0177470:CDS 60.0%
CTCCAAGGATGACCCAGCCA+AGG + chr1_4:64422633-64422652 Msa0177470:five_prime_UTR 60.0%
CTCCTTGGCTGGGTCATCCT+TGG - chr1_4:64430391-64430410 None:intergenic 60.0%
CAAGGATGACCCAGCCAAGG+AGG + chr1_4:64422636-64422655 Msa0177470:five_prime_UTR 60.0%
AGTTAGCGGCCTCCTTGGCT+GGG - chr1_4:64430401-64430420 None:intergenic 60.0%
AAGTTAGCGGCCTCCTTGGC+TGG - chr1_4:64430402-64430421 None:intergenic 60.0%
GATTCCCACCATGCCGATGG+TGG + chr1_4:64430614-64430633 Msa0177470:CDS 60.0%
CTCAACCACCATCGGCATGG+TGG - chr1_4:64430622-64430641 None:intergenic 60.0%
GCCCCTCCGACTACCACTAC+AGG + chr1_4:64422381-64422400 Msa0177470:five_prime_UTR 65.0%
GCTCTCACAGAGGCCCTTCC+TGG + chr1_4:64422541-64422560 Msa0177470:five_prime_UTR 65.0%
GTCCAGGGATGGCCAGACCA+TGG + chr1_4:64429437-64429456 Msa0177470:CDS 65.0%
! CCTCCGACGGAGTACCTTCC+CGG + chr1_4:64430294-64430313 Msa0177470:CDS 65.0%
!! TCGCCGGGAAGGTACTCCGT+CGG - chr1_4:64430300-64430319 None:intergenic 65.0%
CCAGTCTCGACACGCCCCAC+AGG - chr1_4:64422439-64422458 None:intergenic 70.0%
CCTGTGGGGCGTGTCGAGAC+TGG + chr1_4:64422436-64422455 Msa0177470:five_prime_UTR 70.0%
!! CCGGGAAGGTACTCCGTCGG+AGG - chr1_4:64430297-64430316 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 64420510 64430755 64420510 ID=Msa0177470;Name=Msa0177470
chr1_4 mRNA 64420510 64430755 64420510 ID=Msa0177470-mRNA-1;Parent=Msa0177470;Name=Msa0177470-mRNA-1;_AED=0.08;_eAED=0.08;_QI=1557|0.4|0.66|1|0.2|0.16|6|0|396
chr1_4 exon 64420510 64420676 64420510 ID=Msa0177470-mRNA-1:exon:20934;Parent=Msa0177470-mRNA-1
chr1_4 exon 64421525 64422019 64421525 ID=Msa0177470-mRNA-1:exon:20935;Parent=Msa0177470-mRNA-1
chr1_4 exon 64422148 64423099 64422148 ID=Msa0177470-mRNA-1:exon:20936;Parent=Msa0177470-mRNA-1
chr1_4 exon 64429039 64429255 64429039 ID=Msa0177470-mRNA-1:exon:20937;Parent=Msa0177470-mRNA-1
chr1_4 exon 64429265 64429488 64429265 ID=Msa0177470-mRNA-1:exon:20938;Parent=Msa0177470-mRNA-1
chr1_4 exon 64430063 64430755 64430063 ID=Msa0177470-mRNA-1:exon:20939;Parent=Msa0177470-mRNA-1
chr1_4 five_prime_UTR 64420510 64420676 64420510 ID=Msa0177470-mRNA-1:five_prime_utr;Parent=Msa0177470-mRNA-1
chr1_4 five_prime_UTR 64421525 64422019 64421525 ID=Msa0177470-mRNA-1:five_prime_utr;Parent=Msa0177470-mRNA-1
chr1_4 five_prime_UTR 64422148 64423042 64422148 ID=Msa0177470-mRNA-1:five_prime_utr;Parent=Msa0177470-mRNA-1
chr1_4 CDS 64423043 64423099 64423043 ID=Msa0177470-mRNA-1:cds;Parent=Msa0177470-mRNA-1
chr1_4 CDS 64429039 64429255 64429039 ID=Msa0177470-mRNA-1:cds;Parent=Msa0177470-mRNA-1
chr1_4 CDS 64429265 64429488 64429265 ID=Msa0177470-mRNA-1:cds;Parent=Msa0177470-mRNA-1
chr1_4 CDS 64430063 64430755 64430063 ID=Msa0177470-mRNA-1:cds;Parent=Msa0177470-mRNA-1
Gene Sequence

>Msa0177470

ATGATCTATTCACTTGGGAAGCATATGTCAAGTCTGCACCTTCATCTCATAGCTTTTATCTTTTTGTGTTTTCAAGGACAAATGGGTAAGGAAAAGATTAACATTGTTGTCATTGGCGATGTCGACTCTGGGAAGTCAACTACCACCGGTCACCTGATCTACAAACTTGGAGGTGTTGACAAGAGTGTCATTGAGAAATTTGAGAAAGAAGCTGCTGAAATGGGCAAGACTTCAGTCAAGTATGCCTGGATCCTTGACAAGCTCAAGGCTGAACGTATGACCATTGACATTTCTTACTCGAAGTTTGAGACAACAAAGAACTGCTGCACTGTCATTGATGTCCCTGGACACAAAAATTTCATTAAGAACATGATCACTGGGACGTCTGAAGCTGATTGTGCTCTTCTTATCCTTGATTCCTGTATTGGTGCTTTTGAAGCTAGCATGTCCAGGGATGGCCAGACCATGGAACAAGTTCTCCTTGCTTTCACTCTTGGCGCCCTTGACCAAATCAACGAGCCTAAGAGGCCTTCAGACAAGCCCCTCCGACTACCGCTTCAGAATGTCTACAAGTTTGGAGGAATTGGAACTGTACCTGTGGGACGTGTTGAGACTGGTGTCTTGAAACCTGGAATGGAGGTGACTTTTTCCCCTACTGGACTGACAGCTAAAGTCACGTCTGTGGAGATGCACGATAAACCTATGGTGGACGCCTTGTTCACAGAAAAACCTCCGACGGAGTACCTTCCCGGCGACTATGTGAGATTTAATGTTGAGAACGTTGATGTTAAGGATCTCAAGAGTGGCTATGTTGCCTCTAACTCCAAGGATGACCCAGCCAAGGAGGCCGCTAACTTTACATCTCAAGTCGTCGTCATGAATCACCCTGGCAAGATTGAAAATGGCTATGCACCTGTTCTTCACTGCCACACCTCCCACATTGCTGTCAAGTGTGATGAGCTTGTTACCAAGATTGATAGGCGTTCTGGTAGGGTGACTGAGACGAAGCCCAAATTCCTGATGAATGGTGATGCTGGTATTATTAAGATGATTCCCACCATGCCGATGGTGGTTGAGACTTTCTCTGAATATCCTCCACTTGGCCGTTTTACTGTCAGGGACAAGCGTCAAACTGTGGCTGTTGGTGTCATCACGGCTGTGGAGAAGAAGGATCCCAGTGGAGGACTTTAG
Protein sequence

>Msa0177470

MIYSLGKHMSSLHLHLIAFIFLCFQGQMGKEKINIVVIGDVDSGKSTTTGHLIYKLGGVDKSVIEKFEKEAAEMGKTSVKYAWILDKLKAERMTIDISYSKFETTKNCCTVIDVPGHKNFIKNMITGTSEADCALLILDSCIGAFEASMSRDGQTMEQVLLAFTLGALDQINEPKRPSDKPLRLPLQNVYKFGGIGTVPVGRVETGVLKPGMEVTFSPTGLTAKVTSVEMHDKPMVDALFTEKPPTEYLPGDYVRFNVENVDVKDLKSGYVASNSKDDPAKEAANFTSQVVVMNHPGKIENGYAPVLHCHTSHIAVKCDELVTKIDRRSGRVTETKPKFLMNGDAGIIKMIPTMPMVVETFSEYPPLGRFTVRDKRQTVAVGVITAVEKKDPSGGL*