Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177430 | XP_013469496.1 | 99.777 | 448 | 1 | 0 | 1 | 448 | 1 | 448 | 0.0 | 920 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177430 | sp|O49169|EF1A_MANES | 95.749 | 447 | 18 | 1 | 1 | 447 | 1 | 446 | 0.0 | 884 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177430 | G7I9L3 | 99.777 | 448 | 1 | 0 | 1 | 448 | 1 | 448 | 0.0 | 920 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037170 | Msa0177430 | 0.852528 | 4.352510e-61 | -8.615850e-47 |
| Msa0177220 | Msa0177430 | 0.917799 | 3.416572e-86 | -8.615850e-47 |
| Msa0177400 | Msa0177430 | 0.851180 | 1.049904e-60 | -8.615850e-47 |
| Msa0177430 | Msa0177450 | 0.925138 | 2.752828e-90 | -8.615850e-47 |
| Msa0177430 | Msa0177470 | 0.897269 | 1.656733e-76 | -8.615850e-47 |
| Msa0177430 | Msa1349300 | 0.869338 | 3.337965e-66 | -8.615850e-47 |
| Msa0177430 | Msa1349310 | 0.917133 | 7.694335e-86 | -8.615850e-47 |
| Msa0177430 | Msa1438480 | 0.855186 | 7.467644e-62 | -8.615850e-47 |
| Msa0177430 | Msa1438490 | 0.926594 | 3.784296e-91 | -8.615850e-47 |
| Msa0177430 | Msa1444000 | 0.859833 | 3.147000e-63 | -8.615850e-47 |
| Msa0177430 | Msa1444010 | 0.928315 | 3.432801e-92 | -8.615850e-47 |
| Msa0177430 | Msa1461200 | 0.843905 | 1.050686e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177430 | MtrunA17_Chr1g0200071 | 99.777 | 448 | 1 | 0 | 1 | 448 | 1 | 448 | 0.0 | 920 |
| Msa0177430 | MtrunA17_Chr1g0200091 | 99.777 | 448 | 1 | 0 | 1 | 448 | 1 | 448 | 0.0 | 920 |
| Msa0177430 | MtrunA17_Chr1g0200121 | 99.554 | 448 | 2 | 0 | 1 | 448 | 1 | 448 | 0.0 | 920 |
| Msa0177430 | MtrunA17_Chr4g0005781 | 96.205 | 448 | 16 | 1 | 1 | 448 | 1 | 447 | 0.0 | 889 |
| Msa0177430 | MtrunA17_Chr6g0458111 | 97.477 | 436 | 11 | 0 | 1 | 436 | 1 | 436 | 0.0 | 887 |
| Msa0177430 | MtrunA17_Chr6g0458091 | 97.477 | 436 | 11 | 0 | 1 | 436 | 1 | 436 | 0.0 | 887 |
| Msa0177430 | MtrunA17_Chr1g0150331 | 91.353 | 451 | 10 | 2 | 1 | 448 | 1 | 425 | 0.0 | 828 |
| Msa0177430 | MtrunA17_Chr1g0193591 | 82.488 | 434 | 76 | 0 | 1 | 434 | 1 | 434 | 0.0 | 743 |
| Msa0177430 | MtrunA17_Chr1g0204031 | 81.922 | 437 | 74 | 3 | 1 | 437 | 1 | 432 | 0.0 | 735 |
| Msa0177430 | MtrunA17_Chr1g0156421 | 79.032 | 434 | 91 | 0 | 1 | 434 | 1 | 434 | 0.0 | 726 |
| Msa0177430 | MtrunA17_Chr8g0340771 | 79.733 | 449 | 89 | 1 | 1 | 447 | 1 | 449 | 0.0 | 722 |
| Msa0177430 | MtrunA17_Chr5g0415391 | 72.796 | 397 | 108 | 0 | 39 | 435 | 1 | 397 | 0.0 | 595 |
| Msa0177430 | MtrunA17_Chr1g0196251 | 69.479 | 403 | 95 | 2 | 4 | 405 | 5 | 380 | 0.0 | 575 |
| Msa0177430 | MtrunA17_Chr8g0336511 | 78.287 | 327 | 70 | 1 | 1 | 326 | 66 | 392 | 0.0 | 541 |
| Msa0177430 | MtrunA17_Chr2g0319341 | 71.965 | 346 | 94 | 2 | 102 | 445 | 1 | 345 | 0.0 | 516 |
| Msa0177430 | MtrunA17_Chr2g0298371 | 68.615 | 325 | 83 | 2 | 102 | 424 | 1 | 308 | 7.33e-161 | 456 |
| Msa0177430 | MtrunA17_Chr8g0340371 | 70.124 | 241 | 69 | 2 | 1 | 240 | 1 | 239 | 1.60e-118 | 346 |
| Msa0177430 | MtrunA17_Chr1g0210931 | 62.752 | 298 | 57 | 4 | 155 | 447 | 1 | 249 | 1.84e-117 | 344 |
| Msa0177430 | MtrunA17_Chr2g0318291 | 71.681 | 226 | 59 | 3 | 1 | 223 | 1 | 224 | 2.85e-112 | 329 |
| Msa0177430 | MtrunA17_Chr6g0483121 | 37.963 | 432 | 254 | 6 | 5 | 428 | 89 | 514 | 7.27e-97 | 300 |
| Msa0177430 | MtrunA17_Chr8g0392641 | 37.963 | 432 | 258 | 6 | 4 | 429 | 143 | 570 | 4.19e-92 | 290 |
| Msa0177430 | MtrunA17_Chr8g0380091 | 35.797 | 433 | 269 | 6 | 7 | 433 | 275 | 704 | 3.46e-91 | 291 |
| Msa0177430 | MtrunA17_Chr1g0204041 | 86.452 | 155 | 21 | 0 | 1 | 155 | 1 | 155 | 1.29e-90 | 272 |
| Msa0177430 | MtrunA17_Chr1g0200111 | 75.706 | 177 | 33 | 1 | 264 | 430 | 1 | 177 | 2.63e-87 | 264 |
| Msa0177430 | MtrunA17_Chr2g0318281 | 67.895 | 190 | 61 | 0 | 243 | 432 | 5 | 194 | 7.02e-84 | 257 |
| Msa0177430 | MtrunA17_Chr1g0156411 | 81.429 | 140 | 26 | 0 | 6 | 145 | 10 | 149 | 1.18e-78 | 241 |
| Msa0177430 | MtrunA17_Chr8g0340361 | 60.541 | 185 | 57 | 2 | 264 | 433 | 1 | 184 | 4.13e-66 | 209 |
| Msa0177430 | MtrunA17_Chr4g0026961 | 54.124 | 194 | 73 | 4 | 195 | 385 | 32 | 212 | 2.87e-58 | 191 |
| Msa0177430 | MtrunA17_Chr4g0026961 | 76.190 | 42 | 10 | 0 | 1 | 42 | 1 | 42 | 6.71e-13 | 67.8 |
| Msa0177430 | MtrunA17_Chr2g0298381 | 77.778 | 99 | 22 | 0 | 1 | 99 | 1 | 99 | 6.45e-48 | 159 |
| Msa0177430 | MtrunA17_Chr8g0341021 | 76.471 | 102 | 24 | 0 | 3 | 104 | 4 | 105 | 1.20e-47 | 159 |
| Msa0177430 | MtrunA17_Chr7g0259481 | 30.594 | 438 | 244 | 14 | 3 | 429 | 59 | 447 | 4.45e-46 | 165 |
| Msa0177430 | MtrunA17_Chr3g0116821 | 29.955 | 444 | 250 | 15 | 3 | 429 | 88 | 487 | 3.82e-41 | 152 |
| Msa0177430 | MtrunA17_Chr1g0211481 | 79.747 | 79 | 16 | 0 | 5 | 83 | 4 | 82 | 3.51e-36 | 129 |
| Msa0177430 | MtrunA17_Chr2g0319351 | 82.192 | 73 | 13 | 0 | 5 | 77 | 5 | 77 | 4.23e-35 | 125 |
| Msa0177430 | MtrunA17_Chr1g0200101 | 89.231 | 65 | 7 | 0 | 172 | 236 | 49 | 113 | 7.74e-35 | 125 |
| Msa0177430 | MtrunA17_Chr1g0200101 | 73.469 | 49 | 13 | 0 | 21 | 69 | 2 | 50 | 8.80e-17 | 76.3 |
| Msa0177430 | MtrunA17_Chr2g0287231 | 32.389 | 247 | 135 | 6 | 1 | 244 | 10 | 227 | 8.03e-31 | 119 |
| Msa0177430 | MtrunA17_Chr8g0341041 | 35.000 | 220 | 80 | 5 | 213 | 432 | 2 | 158 | 8.97e-29 | 111 |
| Msa0177430 | MtrunA17_Chr7g0261801 | 69.697 | 66 | 17 | 1 | 155 | 220 | 1 | 63 | 4.96e-24 | 95.5 |
| Msa0177430 | MtrunA17_Chr3g0130991 | 26.471 | 272 | 143 | 9 | 9 | 272 | 85 | 307 | 1.05e-12 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177430 | AT1G07920.1 | 95.078 | 447 | 21 | 1 | 1 | 447 | 1 | 446 | 0.0 | 882 |
| Msa0177430 | AT1G07940.4 | 95.078 | 447 | 21 | 1 | 1 | 447 | 1 | 446 | 0.0 | 882 |
| Msa0177430 | AT1G07940.1 | 95.078 | 447 | 21 | 1 | 1 | 447 | 1 | 446 | 0.0 | 882 |
| Msa0177430 | AT1G07940.2 | 95.078 | 447 | 21 | 1 | 1 | 447 | 1 | 446 | 0.0 | 882 |
| Msa0177430 | AT1G07940.3 | 95.078 | 447 | 21 | 1 | 1 | 447 | 1 | 446 | 0.0 | 882 |
| Msa0177430 | AT5G60390.3 | 95.078 | 447 | 21 | 1 | 1 | 447 | 1 | 446 | 0.0 | 882 |
| Msa0177430 | AT5G60390.1 | 95.078 | 447 | 21 | 1 | 1 | 447 | 1 | 446 | 0.0 | 882 |
| Msa0177430 | AT5G60390.2 | 95.078 | 447 | 21 | 1 | 1 | 447 | 1 | 446 | 0.0 | 882 |
| Msa0177430 | AT1G07930.1 | 95.078 | 447 | 21 | 1 | 1 | 447 | 1 | 446 | 0.0 | 882 |
| Msa0177430 | AT1G07930.2 | 98.824 | 255 | 3 | 0 | 1 | 255 | 1 | 255 | 0.0 | 529 |
| Msa0177430 | AT1G07930.2 | 87.179 | 117 | 14 | 1 | 331 | 447 | 254 | 369 | 9.30e-65 | 213 |
| Msa0177430 | AT1G18070.1 | 37.647 | 425 | 257 | 5 | 5 | 424 | 99 | 520 | 6.05e-94 | 293 |
| Msa0177430 | AT1G18070.2 | 37.647 | 425 | 257 | 5 | 5 | 424 | 99 | 520 | 6.05e-94 | 293 |
| Msa0177430 | AT1G18070.3 | 36.927 | 436 | 256 | 6 | 5 | 424 | 99 | 531 | 6.83e-91 | 286 |
| Msa0177430 | AT5G10630.1 | 35.529 | 425 | 266 | 5 | 7 | 426 | 239 | 660 | 2.58e-90 | 288 |
| Msa0177430 | AT5G10630.5 | 35.529 | 425 | 266 | 5 | 7 | 426 | 240 | 661 | 2.64e-90 | 288 |
| Msa0177430 | AT5G10630.2 | 35.529 | 425 | 266 | 5 | 7 | 426 | 240 | 661 | 2.64e-90 | 288 |
| Msa0177430 | AT5G10630.3 | 35.529 | 425 | 266 | 5 | 7 | 426 | 310 | 731 | 1.89e-89 | 287 |
| Msa0177430 | AT5G10630.4 | 35.529 | 425 | 266 | 5 | 7 | 426 | 315 | 736 | 2.01e-89 | 287 |
| Msa0177430 | AT1G35550.1 | 78.641 | 103 | 22 | 0 | 335 | 437 | 1 | 103 | 1.57e-53 | 174 |
| Msa0177430 | AT4G20360.1 | 30.137 | 438 | 257 | 10 | 3 | 429 | 75 | 474 | 6.32e-44 | 160 |
| Msa0177430 | AT4G20360.2 | 30.137 | 438 | 257 | 10 | 3 | 429 | 75 | 474 | 6.32e-44 | 160 |
| Msa0177430 | AT4G02930.1 | 30.296 | 439 | 245 | 15 | 3 | 429 | 63 | 452 | 7.49e-44 | 160 |
| Msa0177430 | AT2G31060.3 | 25.000 | 264 | 160 | 8 | 9 | 263 | 61 | 295 | 3.02e-12 | 69.3 |
| Msa0177430 | AT5G08650.2 | 26.667 | 270 | 145 | 10 | 9 | 272 | 88 | 310 | 2.44e-11 | 66.2 |
| Msa0177430 | AT5G08650.1 | 26.667 | 270 | 145 | 10 | 9 | 272 | 88 | 310 | 2.74e-11 | 66.2 |
| Msa0177430 | AT2G31060.2 | 24.615 | 260 | 162 | 7 | 9 | 263 | 61 | 291 | 4.16e-11 | 65.5 |
Find 167 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACCATTCTTCAAGAATT+TGG | 0.066665 | 1_4:+64386107 | None:intergenic |
| GCTCTCCTTGCTTTCACTCT+TGG | 0.289982 | 1_4:-64386962 | Msa0177430:CDS |
| GTCTACAAGATTGGAGGAAT+TGG | 0.315206 | 1_4:-64386522 | Msa0177430:CDS |
| GCCTCTTAGGCTCATTGATT+TGG | 0.315866 | 1_4:+64386580 | None:intergenic |
| TGTCAAGAATGTTGCTGTTA+AGG | 0.325240 | 1_4:-64386346 | Msa0177430:CDS |
| TCACCATTCTTCAAGAATTT+GGG | 0.331757 | 1_4:+64386108 | None:intergenic |
| ATAGCCAACCTTCTTCAAAT+AGG | 0.332380 | 1_4:+64386716 | None:intergenic |
| CGTACTCTGGATTATTTAGA+TGG | 0.336833 | 1_4:+64388402 | None:intergenic |
| CTTCTTCTTCAATGCTGACT+TGG | 0.345006 | 1_4:+64385921 | None:intergenic |
| CACATCAACATTGTGGTCAT+TGG | 0.354316 | 1_4:-64387352 | Msa0177430:CDS |
| TTCCTTGGCTGGGTCATCCT+TGG | 0.355973 | 1_4:+64386293 | None:intergenic |
| AAGTTGGCAGATTCCTTGGC+TGG | 0.367989 | 1_4:+64386282 | None:intergenic |
| ATTCCATTTGTTCCCATCTC+TGG | 0.368209 | 1_4:-64386681 | Msa0177430:CDS |
| GCTCTCACAGAGGCCCTTCC+TGG | 0.369900 | 1_4:-64386387 | Msa0177430:CDS |
| ATATCTACCCTTGGAGTACT+TGG | 0.380807 | 1_4:+64386764 | None:intergenic |
| TTTAAGCTCTTAAGTCCAAA+TGG | 0.381529 | 1_4:-64387389 | Msa0177430:exon |
| ACTAAGATTGATAGGCGTTC+TGG | 0.382761 | 1_4:-64386150 | Msa0177430:CDS |
| TGCGTCAAACTGTGGCTGTT+GGG | 0.386099 | 1_4:-64385993 | Msa0177430:CDS |
| GTCATTGGCCATGTCGACTC+TGG | 0.395247 | 1_4:-64387337 | Msa0177430:CDS |
| TGTGAAGAACGAACGGTAGT+AGG | 0.403368 | 1_4:+64388349 | None:intergenic |
| TCATTCCTTGCTACTCAACT+AGG | 0.416643 | 1_4:-64388315 | Msa0177430:five_prime_UTR |
| GCAAAAGTGACAACCATTCC+AGG | 0.418006 | 1_4:+64386459 | None:intergenic |
| CTCATCATTGATTCCACTAC+TGG | 0.419293 | 1_4:-64387031 | Msa0177430:CDS |
| ATGAATCACCCTGGCCAGAT+TGG | 0.425183 | 1_4:-64386240 | Msa0177430:CDS |
| CTTAATGAAATCCCTGTGTC+CGG | 0.429384 | 1_4:+64387093 | None:intergenic |
| CCTGTGGGGCGTGTCGAGAC+TGG | 0.431830 | 1_4:-64386492 | Msa0177430:CDS |
| CACCCTGGCCAGATTGGAAA+TGG | 0.432985 | 1_4:-64386234 | Msa0177430:CDS |
| TGTAAAGTTGGCAGATTCCT+TGG | 0.433201 | 1_4:+64386278 | None:intergenic |
| AGCGTTCATTCAAGTATGCC+TGG | 0.444655 | 1_4:-64387219 | Msa0177430:CDS |
| GAGCATAGCCATTTCCAATC+TGG | 0.445726 | 1_4:+64386226 | None:intergenic |
| GGCTTGTCTGAAGGCCTCTT+AGG | 0.446650 | 1_4:+64386567 | None:intergenic |
| ACCTTGTGACGAAGGAGAAA+AGG | 0.446990 | 1_4:+64388272 | None:intergenic |
| AAACCAGAGATGGGAACAAA+TGG | 0.449170 | 1_4:+64386678 | None:intergenic |
| GGTCTGCTTAAGTCCTCCAC+TGG | 0.451209 | 1_4:+64385942 | None:intergenic |
| ACTTCAGTTGTCAGTCCAGT+AGG | 0.456008 | 1_4:+64386435 | None:intergenic |
| CTACAGGATGTCTACAAGAT+TGG | 0.458825 | 1_4:-64386531 | Msa0177430:CDS |
| AGTCTCAACCACCATGGGCT+TGG | 0.462350 | 1_4:+64386059 | None:intergenic |
| ACCAAATCAATGAGCCTAAG+AGG | 0.463105 | 1_4:-64386581 | Msa0177430:CDS |
| CATTCCTTGCTACTCAACTA+GGG | 0.464545 | 1_4:-64388314 | Msa0177430:five_prime_UTR |
| TGGGTCATCCTTGGAGTTTG+AGG | 0.465051 | 1_4:+64386302 | None:intergenic |
| CTCAACCACCATGGGCTTGG+TGG | 0.468734 | 1_4:+64386062 | None:intergenic |
| TAGGCTCATTGATTTGGTCA+AGG | 0.472707 | 1_4:+64386586 | None:intergenic |
| TTAATGAAATCCCTGTGTCC+GGG | 0.473933 | 1_4:+64387094 | None:intergenic |
| AGTCCAAATGGGTAAGGAAA+AGG | 0.474535 | 1_4:-64387377 | Msa0177430:exon |
| AGGCTCATTGATTTGGTCAA+GGG | 0.475242 | 1_4:+64386587 | None:intergenic |
| GGTTTATAAACTACGTACTC+TGG | 0.475822 | 1_4:+64388389 | None:intergenic |
| AACTTGTTACTAAGATTGAT+AGG | 0.478352 | 1_4:-64386158 | Msa0177430:CDS |
| TAGCCATTTCCAATCTGGCC+AGG | 0.481484 | 1_4:+64386231 | None:intergenic |
| TCACCATTGACATTGCTCTC+TGG | 0.481623 | 1_4:-64387159 | Msa0177430:CDS |
| TTAAGCTCTTAAGTCCAAAT+GGG | 0.483320 | 1_4:-64387388 | Msa0177430:exon |
| ACAATCAGCTTGGGATGTTC+CGG | 0.483792 | 1_4:+64387060 | None:intergenic |
| TACAAACCTTGACTGGTACA+AGG | 0.490199 | 1_4:-64386628 | Msa0177430:CDS |
| TCATCCTATTTGAAGAAGGT+TGG | 0.491235 | 1_4:-64386720 | Msa0177430:CDS |
| GATTGATAGGCGTTCTGGTA+AGG | 0.495592 | 1_4:-64386145 | Msa0177430:CDS |
| ATCTCCCTCAAAACCAGAGA+TGG | 0.496573 | 1_4:+64386668 | None:intergenic |
| CATCAAGGCTGTGGAGAAGA+AGG | 0.499167 | 1_4:-64385968 | Msa0177430:CDS |
| CTGACCATCCTTAGAAATAC+CGG | 0.501461 | 1_4:+64386997 | None:intergenic |
| AGTTTCATCCTATTTGAAGA+AGG | 0.501588 | 1_4:-64386724 | Msa0177430:CDS |
| ATCATTGATTCCACTACTGG+TGG | 0.502099 | 1_4:-64387028 | Msa0177430:CDS |
| GAGGTGTGGCAGTCAAGAAC+AGG | 0.504238 | 1_4:+64386204 | None:intergenic |
| CTTCAGTTGTCAGTCCAGTA+GGG | 0.506099 | 1_4:+64386436 | None:intergenic |
| AATTTCATCATATCTACCCT+TGG | 0.508007 | 1_4:+64386755 | None:intergenic |
| AATGACAGTGCAGTAGTACT+TGG | 0.509426 | 1_4:+64387123 | None:intergenic |
| CTCTTAAGTCCAAATGGGTA+AGG | 0.512110 | 1_4:-64387383 | Msa0177430:exon |
| AGCAGGATGATCTATTCACT+TGG | 0.514214 | 1_4:-64385891 | Msa0177430:three_prime_UTR |
| TGAGAACGGCACAATCAGCT+TGG | 0.516820 | 1_4:+64387050 | None:intergenic |
| AGGAATTGGAACTGTGCCTG+TGG | 0.517140 | 1_4:-64386508 | Msa0177430:CDS |
| GATCACTTGAGATGTAAAGT+TGG | 0.519518 | 1_4:+64386266 | None:intergenic |
| GAAGAAGAAGTGAACCGAGC+AGG | 0.523086 | 1_4:-64385908 | Msa0177430:exon |
| GAACAAAAGCTATGAGATGA+AGG | 0.523844 | 1_4:+64385847 | None:intergenic |
| GAGCCCAAATTCTTGAAGAA+TGG | 0.528480 | 1_4:-64386111 | Msa0177430:CDS |
| TCCCACATTGTCACCAGGAA+GGG | 0.528721 | 1_4:+64386374 | None:intergenic |
| AGTCGGAGGGGCTTGTCTGA+AGG | 0.529275 | 1_4:+64386558 | None:intergenic |
| GAGAACGGCACAATCAGCTT+GGG | 0.529995 | 1_4:+64387051 | None:intergenic |
| TGTTGGGGTCATCAAGGCTG+TGG | 0.532596 | 1_4:-64385977 | Msa0177430:CDS |
| GTGAAGAACGAACGGTAGTA+GGG | 0.534571 | 1_4:+64388350 | None:intergenic |
| CAGGATGTCTACAAGATTGG+AGG | 0.535636 | 1_4:-64386528 | Msa0177430:CDS |
| GGAATTGGAACTGTGCCTGT+GGG | 0.536194 | 1_4:-64386507 | Msa0177430:CDS |
| CTTCCAGAGAGCAATGTCAA+TGG | 0.541189 | 1_4:+64387156 | None:intergenic |
| AGCAAACTTGACAGCAATGT+GGG | 0.543557 | 1_4:+64386182 | None:intergenic |
| TGCACTGTCATTGATGCCCC+CGG | 0.544718 | 1_4:-64387112 | Msa0177430:CDS |
| GCCCCTCCGACTACCACTAC+AGG | 0.545601 | 1_4:-64386547 | Msa0177430:CDS |
| CACTTGATCTACAAGCTTGG+AGG | 0.545798 | 1_4:-64387295 | Msa0177430:CDS |
| TCAAGGGCCTCAAGAAGAGT+TGG | 0.546278 | 1_4:+64386603 | None:intergenic |
| TGTGGCTGTTGGGGTCATCA+AGG | 0.547535 | 1_4:-64385983 | Msa0177430:CDS |
| GTCTGCTTAAGTCCTCCACT+GGG | 0.549538 | 1_4:+64385943 | None:intergenic |
| GGCTTCAAAACCACCAGTAG+TGG | 0.551737 | 1_4:+64387018 | None:intergenic |
| GGTCACTTGATCTACAAGCT+TGG | 0.555547 | 1_4:-64387298 | Msa0177430:CDS |
| CCAGTCTCGACACGCCCCAC+AGG | 0.557031 | 1_4:+64386492 | None:intergenic |
| TCAACCACCATGGGCTTGGT+GGG | 0.557624 | 1_4:+64386063 | None:intergenic |
| AAGCAAGGAGAGCATGTTCA+CGG | 0.559179 | 1_4:+64386972 | None:intergenic |
| TCATTGGCCATGTCGACTCT+GGG | 0.559180 | 1_4:-64387336 | Msa0177430:CDS |
| CTCAAGGCTGAACGTGAAAG+AGG | 0.559327 | 1_4:-64387184 | Msa0177430:CDS |
| TTCTTGAAGAATGGTGATGC+TGG | 0.561159 | 1_4:-64386102 | Msa0177430:CDS |
| GAAGCCGGTATTTCTAAGGA+TGG | 0.564413 | 1_4:-64387001 | Msa0177430:CDS |
| TCTGGGAAATCAACCACCAC+TGG | 0.564990 | 1_4:-64387319 | Msa0177430:CDS |
| TTGGACCCTTGTACCAGTCA+AGG | 0.565802 | 1_4:+64386622 | None:intergenic |
| ACAAACCTTGACTGGTACAA+GGG | 0.567625 | 1_4:-64386627 | Msa0177430:CDS |
| TAATGAAATCCCTGTGTCCG+GGG | 0.570266 | 1_4:+64387095 | None:intergenic |
| ATGCGTCAAACTGTGGCTGT+TGG | 0.571110 | 1_4:-64385994 | Msa0177430:CDS |
| TTCATTAAGAACATGATCAC+CGG | 0.572337 | 1_4:-64387079 | Msa0177430:CDS |
| AGCAAGGAGAGCATGTTCAC+GGG | 0.572470 | 1_4:+64386973 | None:intergenic |
| GAGAAAGTCTCAACCACCAT+GGG | 0.575954 | 1_4:+64386054 | None:intergenic |
| CTTGAGCTTGTCAAGGACCC+AGG | 0.577041 | 1_4:+64387201 | None:intergenic |
| AGCGCTCTACAAACCTTGAC+TGG | 0.578233 | 1_4:-64386635 | Msa0177430:CDS |
| TATCTACCCTTGGAGTACTT+GGG | 0.580849 | 1_4:+64386765 | None:intergenic |
| GCGTCAAACTGTGGCTGTTG+GGG | 0.582443 | 1_4:-64385992 | Msa0177430:CDS |
| ATCCTGTAGTGGTAGTCGGA+GGG | 0.583230 | 1_4:+64386545 | None:intergenic |
| GTAGGGTTTATATATAAACA+AGG | 0.583652 | 1_4:+64388367 | None:intergenic |
| ATCCCACATTGTCACCAGGA+AGG | 0.585536 | 1_4:+64386373 | None:intergenic |
| GAGACTGGTGTCATAAAACC+TGG | 0.585699 | 1_4:-64386477 | Msa0177430:CDS |
| CTGGGTCCTTGACAAGCTCA+AGG | 0.585742 | 1_4:-64387200 | Msa0177430:CDS |
| AGTTGGCAGATTCCTTGGCT+GGG | 0.586600 | 1_4:+64386283 | None:intergenic |
| GGCCCTTCCTGGTGACAATG+TGG | 0.586985 | 1_4:-64386376 | Msa0177430:CDS |
| TTGATTTCCCAGAGTCGACA+TGG | 0.588973 | 1_4:+64387329 | None:intergenic |
| CTGTTAAGGATCTCAAGCGT+GGG | 0.589274 | 1_4:-64386332 | Msa0177430:CDS |
| TCCTGTAGTGGTAGTCGGAG+GGG | 0.589369 | 1_4:+64386546 | None:intergenic |
| TTCTCTGAATATCCTCCACT+CGG | 0.591172 | 1_4:-64386036 | Msa0177430:CDS |
| GCCCTTCCTGGTGACAATGT+GGG | 0.592402 | 1_4:-64386375 | Msa0177430:CDS |
| CTCCAAGGATGACCCAGCCA+AGG | 0.595225 | 1_4:-64386295 | Msa0177430:CDS |
| TAGGGTTTATATATAAACAA+GGG | 0.598049 | 1_4:+64388368 | None:intergenic |
| TAGATATGATGAAATTGTGA+AGG | 0.599770 | 1_4:-64386748 | Msa0177430:CDS |
| GCATGTCTCTAACAGCAAAA+CGG | 0.600985 | 1_4:+64386013 | None:intergenic |
| GCGTTCATTCAAGTATGCCT+GGG | 0.605879 | 1_4:-64387218 | Msa0177430:CDS |
| GATGATTCCCACCAAGCCCA+TGG | 0.606444 | 1_4:-64386070 | Msa0177430:CDS |
| TCTCCCTCAAAACCAGAGAT+GGG | 0.607478 | 1_4:+64386669 | None:intergenic |
| TACTACACCCAAGTACTCCA+AGG | 0.613862 | 1_4:-64386772 | Msa0177430:CDS |
| GGTTCGTTACCTTGTGACGA+AGG | 0.614137 | 1_4:+64388264 | None:intergenic |
| TATGAGTTGTGAAGAACGAA+CGG | 0.620255 | 1_4:+64388342 | None:intergenic |
| TCACACCAAGAGTGAAAGCA+AGG | 0.621193 | 1_4:+64386957 | None:intergenic |
| GCTGTTAAGGATCTCAAGCG+TGG | 0.622485 | 1_4:-64386333 | Msa0177430:CDS |
| TTCAGTTGTCAGTCCAGTAG+GGG | 0.622733 | 1_4:+64386437 | None:intergenic |
| CAAGGGTCCAACTCTTCTTG+AGG | 0.623175 | 1_4:-64386610 | Msa0177430:CDS |
| AGCCATTTCCAATCTGGCCA+GGG | 0.623271 | 1_4:+64386232 | None:intergenic |
| GACAACTGAAGTCAAGTCTG+TGG | 0.624055 | 1_4:-64386424 | Msa0177430:CDS |
| AGACATCCTGTAGTGGTAGT+CGG | 0.624076 | 1_4:+64386541 | None:intergenic |
| ACAGCAAAACGGCCGAGTGG+AGG | 0.624787 | 1_4:+64386024 | None:intergenic |
| TTGACAAGCGTGTCATCGAG+AGG | 0.625348 | 1_4:-64387270 | Msa0177430:CDS |
| TGGTGTCATAAAACCTGGAA+TGG | 0.625384 | 1_4:-64386472 | Msa0177430:CDS |
| GCAGGATGATCTATTCACTT+GGG | 0.628034 | 1_4:-64385890 | Msa0177430:three_prime_UTR |
| GTTCAGCCTTGAGCTTGTCA+AGG | 0.628494 | 1_4:+64387194 | None:intergenic |
| GTATGTTGCCTCAAACTCCA+AGG | 0.633897 | 1_4:-64386310 | Msa0177430:CDS |
| CATCCTGTAGTGGTAGTCGG+AGG | 0.640179 | 1_4:+64386544 | None:intergenic |
| CAGCAAACTTGACAGCAATG+TGG | 0.640811 | 1_4:+64386181 | None:intergenic |
| AGAGAAAGTCTCAACCACCA+TGG | 0.641605 | 1_4:+64386053 | None:intergenic |
| TTCTGGTAAGGAGATTGAGA+AGG | 0.643722 | 1_4:-64386133 | Msa0177430:CDS |
| GAATTGGAACTGTGCCTGTG+GGG | 0.644316 | 1_4:-64386506 | Msa0177430:CDS |
| AGTGGAATCAATGATGAGAA+CGG | 0.644693 | 1_4:+64387036 | None:intergenic |
| AGTGAATAGATCATCCTGCT+CGG | 0.649458 | 1_4:+64385894 | None:intergenic |
| TGACAGCAATGTGGGAGGTG+TGG | 0.650950 | 1_4:+64386190 | None:intergenic |
| TTAAATCCCACATTGTCACC+AGG | 0.657091 | 1_4:+64386369 | None:intergenic |
| ATCTTGTAGACATCCTGTAG+TGG | 0.657887 | 1_4:+64386534 | None:intergenic |
| AATGATCTGCTGTTGCAACA+AGG | 0.659392 | 1_4:-64386930 | Msa0177430:intron |
| AATGAAATCCCTGTGTCCGG+GGG | 0.661737 | 1_4:+64387096 | None:intergenic |
| GAGAAGAAGGATCCCAGTGG+AGG | 0.667988 | 1_4:-64385955 | Msa0177430:CDS |
| AAAGGTTCACATCAACATTG+TGG | 0.675059 | 1_4:-64387359 | Msa0177430:CDS |
| ACTACACCCAAGTACTCCAA+GGG | 0.678033 | 1_4:-64386771 | Msa0177430:CDS |
| CTTGTAGATCAAGTGACCAG+TGG | 0.682705 | 1_4:+64387303 | None:intergenic |
| GAAACCCTAGTTGAGTAGCA+AGG | 0.685158 | 1_4:+64388310 | None:intergenic |
| TAGAGACATGCGTCAAACTG+TGG | 0.690315 | 1_4:-64386001 | Msa0177430:CDS |
| CTAACAGCAAAACGGCCGAG+TGG | 0.692072 | 1_4:+64386021 | None:intergenic |
| AAACTTGACAGCAATGTGGG+AGG | 0.695398 | 1_4:+64386185 | None:intergenic |
| GTAGATCAAGTGACCAGTGG+TGG | 0.699002 | 1_4:+64387306 | None:intergenic |
| GTGATCATAATGAATCACCC+TGG | 0.699056 | 1_4:-64386249 | Msa0177430:CDS |
| GATTCCCACCAAGCCCATGG+TGG | 0.723849 | 1_4:-64386067 | Msa0177430:CDS |
| GTGGAGAAGAAGGATCCCAG+TGG | 0.734762 | 1_4:-64385958 | Msa0177430:CDS |
| GCATCATGAAGCTCTCACAG+AGG | 0.758446 | 1_4:-64386397 | Msa0177430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATGATGATATAATAA+TGG | + | chr1_4:64386259-64386278 | None:intergenic | 10.0% |
| !! | TTATTATATACTTGTTTGTT+TGG | - | chr1_4:64386296-64386315 | Msa0177430:CDS | 15.0% |
| !!! | TATTACTTAATTTGTTATGA+AGG | - | chr1_4:64386406-64386425 | Msa0177430:CDS | 15.0% |
| !! | AATAAAATATACAACTTCAA+GGG | + | chr1_4:64387318-64387337 | None:intergenic | 15.0% |
| !! | TAATAAAATATACAACTTCA+AGG | + | chr1_4:64387319-64387338 | None:intergenic | 15.0% |
| !! | TAGGGTTTATATATAAACAA+GGG | + | chr1_4:64385840-64385859 | None:intergenic | 20.0% |
| !! | GTATTACTTAATTCATGTTT+GGG | - | chr1_4:64386428-64386447 | Msa0177430:CDS | 20.0% |
| !!! | TTAAAGTGAATTATGGATTA+TGG | + | chr1_4:64386617-64386636 | None:intergenic | 20.0% |
| !!! | CATTAGTTTAAAGTGAATTA+TGG | + | chr1_4:64386624-64386643 | None:intergenic | 20.0% |
| !! | ATAAAATATACAACTTCAAG+GGG | + | chr1_4:64387317-64387336 | None:intergenic | 20.0% |
| ! | GTAGGGTTTATATATAAACA+AGG | + | chr1_4:64385841-64385860 | None:intergenic | 25.0% |
| ! | TTGAGAAGAAAAGATATTGA+AGG | + | chr1_4:64385977-64385996 | None:intergenic | 25.0% |
| ! | ATGATGATATAATAATGGCA+TGG | + | chr1_4:64386254-64386273 | None:intergenic | 25.0% |
| ! | TTTGTTTGGTATTCAATCAT+TGG | - | chr1_4:64386310-64386329 | Msa0177430:CDS | 25.0% |
| ! | TGTGTTCATACTTATGTATA+TGG | - | chr1_4:64386361-64386380 | Msa0177430:CDS | 25.0% |
| ! | GTGTTCATACTTATGTATAT+GGG | - | chr1_4:64386362-64386381 | Msa0177430:CDS | 25.0% |
| ! | TGTTCATACTTATGTATATG+GGG | - | chr1_4:64386363-64386382 | Msa0177430:CDS | 25.0% |
| ! | GGTATTACTTAATTCATGTT+TGG | - | chr1_4:64386427-64386446 | Msa0177430:CDS | 25.0% |
| !! | CCATAAAGATTTTATGCAAT+GGG | - | chr1_4:64386519-64386538 | Msa0177430:CDS | 25.0% |
| !! | CATAAAGATTTTATGCAATG+GGG | - | chr1_4:64386520-64386539 | Msa0177430:CDS | 25.0% |
| ! | TAGATATGATGAAATTGTGA+AGG | - | chr1_4:64387457-64387476 | Msa0177430:intron | 25.0% |
| !!! | AACTTGTTACTAAGATTGAT+AGG | - | chr1_4:64388047-64388066 | Msa0177430:intron | 25.0% |
| ! | GATATTGAAGGATTTAGAGT+TGG | + | chr1_4:64385965-64385984 | None:intergenic | 30.0% |
| !! | TGAACTTTTGAAAGAGTTGA+TGG | - | chr1_4:64386185-64386204 | Msa0177430:CDS | 30.0% |
| GGCTAACAAATATATGTCAA+AGG | + | chr1_4:64386501-64386520 | None:intergenic | 30.0% | |
| ! | GCCATAAAGATTTTATGCAA+TGG | - | chr1_4:64386518-64386537 | Msa0177430:CDS | 30.0% |
| CCCATTGCATAAAATCTTTA+TGG | + | chr1_4:64386522-64386541 | None:intergenic | 30.0% | |
| ! | AATTATGGATTATGGAGATG+CGG | + | chr1_4:64386609-64386628 | None:intergenic | 30.0% |
| ! | GTTTTCTGTGCTGAAAATAA+TGG | - | chr1_4:64386776-64386795 | Msa0177430:CDS | 30.0% |
| TTTAAGCTCTTAAGTCCAAA+TGG | - | chr1_4:64386816-64386835 | Msa0177430:intron | 30.0% | |
| TTAAGCTCTTAAGTCCAAAT+GGG | - | chr1_4:64386817-64386836 | Msa0177430:intron | 30.0% | |
| TTCATTAAGAACATGATCAC+CGG | - | chr1_4:64387126-64387145 | Msa0177430:CDS | 30.0% | |
| AATTTCATCATATCTACCCT+TGG | + | chr1_4:64387453-64387472 | None:intergenic | 30.0% | |
| AGTTTCATCCTATTTGAAGA+AGG | - | chr1_4:64387481-64387500 | Msa0177430:intron | 30.0% | |
| ! | GAACAAATGGAATTTTGTCT+GGG | + | chr1_4:64387517-64387536 | None:intergenic | 30.0% |
| TCACCATTCTTCAAGAATTT+GGG | + | chr1_4:64388100-64388119 | None:intergenic | 30.0% | |
| ATCACCATTCTTCAAGAATT+TGG | + | chr1_4:64388101-64388120 | None:intergenic | 30.0% | |
| CGTACTCTGGATTATTTAGA+TGG | + | chr1_4:64385806-64385825 | None:intergenic | 35.0% | |
| GGTTTATAAACTACGTACTC+TGG | + | chr1_4:64385819-64385838 | None:intergenic | 35.0% | |
| TATGAGTTGTGAAGAACGAA+CGG | + | chr1_4:64385866-64385885 | None:intergenic | 35.0% | |
| !! | ACCATCATCGATTCATTCAT+AGG | - | chr1_4:64386018-64386037 | Msa0177430:CDS | 35.0% |
| ACCTATGAATGAATCGATGA+TGG | + | chr1_4:64386022-64386041 | None:intergenic | 35.0% | |
| ! | TTGGTATTCAATCATTGGCT+TGG | - | chr1_4:64386315-64386334 | Msa0177430:CDS | 35.0% |
| ! | GGGTTTTCTATCTGTTATGA+AGG | - | chr1_4:64386383-64386402 | Msa0177430:CDS | 35.0% |
| ! | ATTATGGATTATGGAGATGC+GGG | + | chr1_4:64386608-64386627 | None:intergenic | 35.0% |
| TATTTCAGCAGATATAGAGC+AGG | + | chr1_4:64386670-64386689 | None:intergenic | 35.0% | |
| TCTGCTGAAATATAGTGACA+TGG | - | chr1_4:64386678-64386697 | Msa0177430:CDS | 35.0% | |
| AAAGGTTCACATCAACATTG+TGG | - | chr1_4:64386846-64386865 | Msa0177430:intron | 35.0% | |
| AGTGGAATCAATGATGAGAA+CGG | + | chr1_4:64387172-64387191 | None:intergenic | 35.0% | |
| !!! | TTTTGAAGCCGGTATTTCTA+AGG | - | chr1_4:64387200-64387219 | Msa0177430:CDS | 35.0% |
| ATCCATCTGTTCAAGATAGA+TGG | + | chr1_4:64387411-64387430 | None:intergenic | 35.0% | |
| TCATCCTATTTGAAGAAGGT+TGG | - | chr1_4:64387485-64387504 | Msa0177430:intron | 35.0% | |
| ATAGCCAACCTTCTTCAAAT+AGG | + | chr1_4:64387492-64387511 | None:intergenic | 35.0% | |
| ! | GGAACAAATGGAATTTTGTC+TGG | + | chr1_4:64387518-64387537 | None:intergenic | 35.0% |
| ! | TGTCAAGAATGTTGCTGTTA+AGG | - | chr1_4:64387859-64387878 | Msa0177430:intron | 35.0% |
| GATCACTTGAGATGTAAAGT+TGG | + | chr1_4:64387942-64387961 | None:intergenic | 35.0% | |
| GAACAAAAGCTATGAGATGA+AGG | + | chr1_4:64388361-64388380 | None:intergenic | 35.0% | |
| ! | ATAGCTTTTGTTCTCAGAAC+TGG | - | chr1_4:64388368-64388387 | Msa0177430:five_prime_UTR | 35.0% |
| ! | TAGCTTTTGTTCTCAGAACT+GGG | - | chr1_4:64388369-64388388 | Msa0177430:five_prime_UTR | 35.0% |
| TCATTCCTTGCTACTCAACT+AGG | - | chr1_4:64385890-64385909 | Msa0177430:three_prime_UTR | 40.0% | |
| CATTCCTTGCTACTCAACTA+GGG | - | chr1_4:64385891-64385910 | Msa0177430:three_prime_UTR | 40.0% | |
| ! | TTATGGATTATGGAGATGCG+GGG | + | chr1_4:64386607-64386626 | None:intergenic | 40.0% |
| CTCTTAAGTCCAAATGGGTA+AGG | - | chr1_4:64386822-64386841 | Msa0177430:intron | 40.0% | |
| AGTCCAAATGGGTAAGGAAA+AGG | - | chr1_4:64386828-64386847 | Msa0177430:intron | 40.0% | |
| ! | GAACCTTTTCCTTACCCATT+TGG | + | chr1_4:64386834-64386853 | None:intergenic | 40.0% |
| CACATCAACATTGTGGTCAT+TGG | - | chr1_4:64386853-64386872 | Msa0177430:intron | 40.0% | |
| AATGACAGTGCAGTAGTACT+TGG | + | chr1_4:64387085-64387104 | None:intergenic | 40.0% | |
| TTAATGAAATCCCTGTGTCC+GGG | + | chr1_4:64387114-64387133 | None:intergenic | 40.0% | |
| CTTAATGAAATCCCTGTGTC+CGG | + | chr1_4:64387115-64387134 | None:intergenic | 40.0% | |
| !! | CTCATCATTGATTCCACTAC+TGG | - | chr1_4:64387174-64387193 | Msa0177430:CDS | 40.0% |
| !! | ATCATTGATTCCACTACTGG+TGG | - | chr1_4:64387177-64387196 | Msa0177430:CDS | 40.0% |
| CTGACCATCCTTAGAAATAC+CGG | + | chr1_4:64387211-64387230 | None:intergenic | 40.0% | |
| AATGATCTGCTGTTGCAACA+AGG | - | chr1_4:64387275-64387294 | Msa0177430:CDS | 40.0% | |
| TGCCATCTATCTTGAACAGA+TGG | - | chr1_4:64387406-64387425 | Msa0177430:five_prime_UTR | 40.0% | |
| ! | TATCTACCCTTGGAGTACTT+GGG | + | chr1_4:64387443-64387462 | None:intergenic | 40.0% |
| ! | ATATCTACCCTTGGAGTACT+TGG | + | chr1_4:64387444-64387463 | None:intergenic | 40.0% |
| ATTCCATTTGTTCCCATCTC+TGG | - | chr1_4:64387524-64387543 | Msa0177430:intron | 40.0% | |
| AAACCAGAGATGGGAACAAA+TGG | + | chr1_4:64387530-64387549 | None:intergenic | 40.0% | |
| TACAAACCTTGACTGGTACA+AGG | - | chr1_4:64387577-64387596 | Msa0177430:intron | 40.0% | |
| ACAAACCTTGACTGGTACAA+GGG | - | chr1_4:64387578-64387597 | Msa0177430:intron | 40.0% | |
| !! | AGGCTCATTGATTTGGTCAA+GGG | + | chr1_4:64387621-64387640 | None:intergenic | 40.0% |
| !! | TAGGCTCATTGATTTGGTCA+AGG | + | chr1_4:64387622-64387641 | None:intergenic | 40.0% |
| ACCAAATCAATGAGCCTAAG+AGG | - | chr1_4:64387624-64387643 | Msa0177430:intron | 40.0% | |
| ATCTTGTAGACATCCTGTAG+TGG | + | chr1_4:64387674-64387693 | None:intergenic | 40.0% | |
| CTACAGGATGTCTACAAGAT+TGG | - | chr1_4:64387674-64387693 | Msa0177430:intron | 40.0% | |
| GTCTACAAGATTGGAGGAAT+TGG | - | chr1_4:64387683-64387702 | Msa0177430:intron | 40.0% | |
| !! | TGGTGTCATAAAACCTGGAA+TGG | - | chr1_4:64387733-64387752 | Msa0177430:intron | 40.0% |
| TTAAATCCCACATTGTCACC+AGG | + | chr1_4:64387839-64387858 | None:intergenic | 40.0% | |
| TGTAAAGTTGGCAGATTCCT+TGG | + | chr1_4:64387930-64387949 | None:intergenic | 40.0% | |
| GTGATCATAATGAATCACCC+TGG | - | chr1_4:64387956-64387975 | Msa0177430:intron | 40.0% | |
| AGCAAACTTGACAGCAATGT+GGG | + | chr1_4:64388026-64388045 | None:intergenic | 40.0% | |
| ACTAAGATTGATAGGCGTTC+TGG | - | chr1_4:64388055-64388074 | Msa0177430:intron | 40.0% | |
| TTCTGGTAAGGAGATTGAGA+AGG | - | chr1_4:64388072-64388091 | Msa0177430:intron | 40.0% | |
| GAGCCCAAATTCTTGAAGAA+TGG | - | chr1_4:64388094-64388113 | Msa0177430:intron | 40.0% | |
| ! | TTCTTGAAGAATGGTGATGC+TGG | - | chr1_4:64388103-64388122 | Msa0177430:intron | 40.0% |
| TTCTCTGAATATCCTCCACT+CGG | - | chr1_4:64388169-64388188 | Msa0177430:intron | 40.0% | |
| GCATGTCTCTAACAGCAAAA+CGG | + | chr1_4:64388195-64388214 | None:intergenic | 40.0% | |
| ! | CTTCTTCTTCAATGCTGACT+TGG | + | chr1_4:64388287-64388306 | None:intergenic | 40.0% |
| AGTGAATAGATCATCCTGCT+CGG | + | chr1_4:64388314-64388333 | None:intergenic | 40.0% | |
| AGCAGGATGATCTATTCACT+TGG | - | chr1_4:64388314-64388333 | Msa0177430:five_prime_UTR | 40.0% | |
| GCAGGATGATCTATTCACTT+GGG | - | chr1_4:64388315-64388334 | Msa0177430:five_prime_UTR | 40.0% | |
| GTGAAGAACGAACGGTAGTA+GGG | + | chr1_4:64385858-64385877 | None:intergenic | 45.0% | |
| TGTGAAGAACGAACGGTAGT+AGG | + | chr1_4:64385859-64385878 | None:intergenic | 45.0% | |
| GAAACCCTAGTTGAGTAGCA+AGG | + | chr1_4:64385898-64385917 | None:intergenic | 45.0% | |
| ACCTTGTGACGAAGGAGAAA+AGG | + | chr1_4:64385936-64385955 | None:intergenic | 45.0% | |
| CAATGGGGATGTAGCTCATA+TGG | - | chr1_4:64386535-64386554 | Msa0177430:CDS | 45.0% | |
| TTGATTTCCCAGAGTCGACA+TGG | + | chr1_4:64386879-64386898 | None:intergenic | 45.0% | |
| CTTGTAGATCAAGTGACCAG+TGG | + | chr1_4:64386905-64386924 | None:intergenic | 45.0% | |
| GGTCACTTGATCTACAAGCT+TGG | - | chr1_4:64386907-64386926 | Msa0177430:intron | 45.0% | |
| CACTTGATCTACAAGCTTGG+AGG | - | chr1_4:64386910-64386929 | Msa0177430:intron | 45.0% | |
| AGCGTTCATTCAAGTATGCC+TGG | - | chr1_4:64386986-64387005 | Msa0177430:CDS | 45.0% | |
| GCGTTCATTCAAGTATGCCT+GGG | - | chr1_4:64386987-64387006 | Msa0177430:CDS | 45.0% | |
| TCACCATTGACATTGCTCTC+TGG | - | chr1_4:64387046-64387065 | Msa0177430:CDS | 45.0% | |
| CTTCCAGAGAGCAATGTCAA+TGG | + | chr1_4:64387052-64387071 | None:intergenic | 45.0% | |
| TAATGAAATCCCTGTGTCCG+GGG | + | chr1_4:64387113-64387132 | None:intergenic | 45.0% | |
| ACAATCAGCTTGGGATGTTC+CGG | + | chr1_4:64387148-64387167 | None:intergenic | 45.0% | |
| !!! | ACTACTGGTGGTTTTGAAGC+CGG | - | chr1_4:64387189-64387208 | Msa0177430:CDS | 45.0% |
| ! | GAAGCCGGTATTTCTAAGGA+TGG | - | chr1_4:64387204-64387223 | Msa0177430:CDS | 45.0% |
| ! | AAGCAAGGAGAGCATGTTCA+CGG | + | chr1_4:64387236-64387255 | None:intergenic | 45.0% |
| TCACACCAAGAGTGAAAGCA+AGG | + | chr1_4:64387251-64387270 | None:intergenic | 45.0% | |
| TACTACACCCAAGTACTCCA+AGG | - | chr1_4:64387433-64387452 | Msa0177430:intron | 45.0% | |
| ACTACACCCAAGTACTCCAA+GGG | - | chr1_4:64387434-64387453 | Msa0177430:intron | 45.0% | |
| !!! | TGTTCCCATCTCTGGTTTTG+AGG | - | chr1_4:64387532-64387551 | Msa0177430:intron | 45.0% |
| !!! | GTTCCCATCTCTGGTTTTGA+GGG | - | chr1_4:64387533-64387552 | Msa0177430:intron | 45.0% |
| TCTCCCTCAAAACCAGAGAT+GGG | + | chr1_4:64387539-64387558 | None:intergenic | 45.0% | |
| ATCTCCCTCAAAACCAGAGA+TGG | + | chr1_4:64387540-64387559 | None:intergenic | 45.0% | |
| ! | GCCTCTTAGGCTCATTGATT+TGG | + | chr1_4:64387628-64387647 | None:intergenic | 45.0% |
| AGACATCCTGTAGTGGTAGT+CGG | + | chr1_4:64387667-64387686 | None:intergenic | 45.0% | |
| CAGGATGTCTACAAGATTGG+AGG | - | chr1_4:64387677-64387696 | Msa0177430:intron | 45.0% | |
| !! | GAGACTGGTGTCATAAAACC+TGG | - | chr1_4:64387728-64387747 | Msa0177430:intron | 45.0% |
| GCAAAAGTGACAACCATTCC+AGG | + | chr1_4:64387749-64387768 | None:intergenic | 45.0% | |
| TTCAGTTGTCAGTCCAGTAG+GGG | + | chr1_4:64387771-64387790 | None:intergenic | 45.0% | |
| CTTCAGTTGTCAGTCCAGTA+GGG | + | chr1_4:64387772-64387791 | None:intergenic | 45.0% | |
| ACTTCAGTTGTCAGTCCAGT+AGG | + | chr1_4:64387773-64387792 | None:intergenic | 45.0% | |
| GACAACTGAAGTCAAGTCTG+TGG | - | chr1_4:64387781-64387800 | Msa0177430:intron | 45.0% | |
| CTGTTAAGGATCTCAAGCGT+GGG | - | chr1_4:64387873-64387892 | Msa0177430:intron | 45.0% | |
| GTATGTTGCCTCAAACTCCA+AGG | - | chr1_4:64387895-64387914 | Msa0177430:intron | 45.0% | |
| GAGCATAGCCATTTCCAATC+TGG | + | chr1_4:64387982-64388001 | None:intergenic | 45.0% | |
| AAACTTGACAGCAATGTGGG+AGG | + | chr1_4:64388023-64388042 | None:intergenic | 45.0% | |
| CAGCAAACTTGACAGCAATG+TGG | + | chr1_4:64388027-64388046 | None:intergenic | 45.0% | |
| GATTGATAGGCGTTCTGGTA+AGG | - | chr1_4:64388060-64388079 | Msa0177430:intron | 45.0% | |
| GAGAAAGTCTCAACCACCAT+GGG | + | chr1_4:64388154-64388173 | None:intergenic | 45.0% | |
| AGAGAAAGTCTCAACCACCA+TGG | + | chr1_4:64388155-64388174 | None:intergenic | 45.0% | |
| TAGAGACATGCGTCAAACTG+TGG | - | chr1_4:64388204-64388223 | Msa0177430:intron | 45.0% | |
| !! | AGAACTGGGTTCTAGATCGA+CGG | - | chr1_4:64388383-64388402 | Msa0177430:five_prime_UTR | 45.0% |
| ! | GCCTTTTCTCCTTCGTCACA+AGG | - | chr1_4:64385932-64385951 | Msa0177430:CDS | 50.0% |
| GGTTCGTTACCTTGTGACGA+AGG | + | chr1_4:64385944-64385963 | None:intergenic | 50.0% | |
| CACTTAGCATGCGAGAGGTA+CGG | - | chr1_4:64386572-64386591 | Msa0177430:CDS | 50.0% | |
| ! | ACTTAGCATGCGAGAGGTAC+GGG | - | chr1_4:64386573-64386592 | Msa0177430:CDS | 50.0% |
| !! | TCATTGGCCATGTCGACTCT+GGG | - | chr1_4:64386869-64386888 | Msa0177430:intron | 50.0% |
| TCTGGGAAATCAACCACCAC+TGG | - | chr1_4:64386886-64386905 | Msa0177430:intron | 50.0% | |
| GTAGATCAAGTGACCAGTGG+TGG | + | chr1_4:64386902-64386921 | None:intergenic | 50.0% | |
| TTGACAAGCGTGTCATCGAG+AGG | - | chr1_4:64386935-64386954 | Msa0177430:CDS | 50.0% | |
| GTTCAGCCTTGAGCTTGTCA+AGG | + | chr1_4:64387014-64387033 | None:intergenic | 50.0% | |
| CTCAAGGCTGAACGTGAAAG+AGG | - | chr1_4:64387021-64387040 | Msa0177430:CDS | 50.0% | |
| AATGAAATCCCTGTGTCCGG+GGG | + | chr1_4:64387112-64387131 | None:intergenic | 50.0% | |
| GAGAACGGCACAATCAGCTT+GGG | + | chr1_4:64387157-64387176 | None:intergenic | 50.0% | |
| TGAGAACGGCACAATCAGCT+TGG | + | chr1_4:64387158-64387177 | None:intergenic | 50.0% | |
| GGCTTCAAAACCACCAGTAG+TGG | + | chr1_4:64387190-64387209 | None:intergenic | 50.0% | |
| ! | AGCAAGGAGAGCATGTTCAC+GGG | + | chr1_4:64387235-64387254 | None:intergenic | 50.0% |
| GCTCTCCTTGCTTTCACTCT+TGG | - | chr1_4:64387243-64387262 | Msa0177430:CDS | 50.0% | |
| AGCGCTCTACAAACCTTGAC+TGG | - | chr1_4:64387570-64387589 | Msa0177430:intron | 50.0% | |
| TTGGACCCTTGTACCAGTCA+AGG | + | chr1_4:64387586-64387605 | None:intergenic | 50.0% | |
| CAAGGGTCCAACTCTTCTTG+AGG | - | chr1_4:64387595-64387614 | Msa0177430:intron | 50.0% | |
| TCAAGGGCCTCAAGAAGAGT+TGG | + | chr1_4:64387605-64387624 | None:intergenic | 50.0% | |
| ATCCTGTAGTGGTAGTCGGA+GGG | + | chr1_4:64387663-64387682 | None:intergenic | 50.0% | |
| AGGAATTGGAACTGTGCCTG+TGG | - | chr1_4:64387697-64387716 | Msa0177430:intron | 50.0% | |
| GGAATTGGAACTGTGCCTGT+GGG | - | chr1_4:64387698-64387717 | Msa0177430:intron | 50.0% | |
| GAATTGGAACTGTGCCTGTG+GGG | - | chr1_4:64387699-64387718 | Msa0177430:intron | 50.0% | |
| !!! | GTTGTCACTTTTGCCCCTAC+TGG | - | chr1_4:64387755-64387774 | Msa0177430:intron | 50.0% |
| GCATCATGAAGCTCTCACAG+AGG | - | chr1_4:64387808-64387827 | Msa0177430:intron | 50.0% | |
| TCCCACATTGTCACCAGGAA+GGG | + | chr1_4:64387834-64387853 | None:intergenic | 50.0% | |
| ATCCCACATTGTCACCAGGA+AGG | + | chr1_4:64387835-64387854 | None:intergenic | 50.0% | |
| GCTGTTAAGGATCTCAAGCG+TGG | - | chr1_4:64387872-64387891 | Msa0177430:intron | 50.0% | |
| TGGGTCATCCTTGGAGTTTG+AGG | + | chr1_4:64387906-64387925 | None:intergenic | 50.0% | |
| AGTTGGCAGATTCCTTGGCT+GGG | + | chr1_4:64387925-64387944 | None:intergenic | 50.0% | |
| AAGTTGGCAGATTCCTTGGC+TGG | + | chr1_4:64387926-64387945 | None:intergenic | 50.0% | |
| ATGAATCACCCTGGCCAGAT+TGG | - | chr1_4:64387965-64387984 | Msa0177430:intron | 50.0% | |
| AGCCATTTCCAATCTGGCCA+GGG | + | chr1_4:64387976-64387995 | None:intergenic | 50.0% | |
| TAGCCATTTCCAATCTGGCC+AGG | + | chr1_4:64387977-64387996 | None:intergenic | 50.0% | |
| ATGCGTCAAACTGTGGCTGT+TGG | - | chr1_4:64388211-64388230 | Msa0177430:intron | 50.0% | |
| TGCGTCAAACTGTGGCTGTT+GGG | - | chr1_4:64388212-64388231 | Msa0177430:intron | 50.0% | |
| CATCAAGGCTGTGGAGAAGA+AGG | - | chr1_4:64388237-64388256 | Msa0177430:intron | 50.0% | |
| GTCTGCTTAAGTCCTCCACT+GGG | + | chr1_4:64388265-64388284 | None:intergenic | 50.0% | |
| GAAGAAGAAGTGAACCGAGC+AGG | - | chr1_4:64388297-64388316 | Msa0177430:five_prime_UTR | 50.0% | |
| CGCATCACTTAGCATGCGAG+AGG | - | chr1_4:64386567-64386586 | Msa0177430:CDS | 55.0% | |
| ! | CTTAGCATGCGAGAGGTACG+GGG | - | chr1_4:64386574-64386593 | Msa0177430:CDS | 55.0% |
| !! | GTCATTGGCCATGTCGACTC+TGG | - | chr1_4:64386868-64386887 | Msa0177430:intron | 55.0% |
| CTTGAGCTTGTCAAGGACCC+AGG | + | chr1_4:64387007-64387026 | None:intergenic | 55.0% | |
| CTGGGTCCTTGACAAGCTCA+AGG | - | chr1_4:64387005-64387024 | Msa0177430:CDS | 55.0% | |
| TGCACTGTCATTGATGCCCC+CGG | - | chr1_4:64387093-64387112 | Msa0177430:CDS | 55.0% | |
| GGCTTGTCTGAAGGCCTCTT+AGG | + | chr1_4:64387641-64387660 | None:intergenic | 55.0% | |
| TCCTGTAGTGGTAGTCGGAG+GGG | + | chr1_4:64387662-64387681 | None:intergenic | 55.0% | |
| CATCCTGTAGTGGTAGTCGG+AGG | + | chr1_4:64387664-64387683 | None:intergenic | 55.0% | |
| GCCCTTCCTGGTGACAATGT+GGG | - | chr1_4:64387830-64387849 | Msa0177430:intron | 55.0% | |
| TTCCTTGGCTGGGTCATCCT+TGG | + | chr1_4:64387915-64387934 | None:intergenic | 55.0% | |
| CACCCTGGCCAGATTGGAAA+TGG | - | chr1_4:64387971-64387990 | Msa0177430:intron | 55.0% | |
| GAGGTGTGGCAGTCAAGAAC+AGG | + | chr1_4:64388004-64388023 | None:intergenic | 55.0% | |
| TGACAGCAATGTGGGAGGTG+TGG | + | chr1_4:64388018-64388037 | None:intergenic | 55.0% | |
| GATGATTCCCACCAAGCCCA+TGG | - | chr1_4:64388135-64388154 | Msa0177430:intron | 55.0% | |
| ! | TCAACCACCATGGGCTTGGT+GGG | + | chr1_4:64388145-64388164 | None:intergenic | 55.0% |
| AGTCTCAACCACCATGGGCT+TGG | + | chr1_4:64388149-64388168 | None:intergenic | 55.0% | |
| CTAACAGCAAAACGGCCGAG+TGG | + | chr1_4:64388187-64388206 | None:intergenic | 55.0% | |
| GCGTCAAACTGTGGCTGTTG+GGG | - | chr1_4:64388213-64388232 | Msa0177430:intron | 55.0% | |
| TGTGGCTGTTGGGGTCATCA+AGG | - | chr1_4:64388222-64388241 | Msa0177430:intron | 55.0% | |
| TGTTGGGGTCATCAAGGCTG+TGG | - | chr1_4:64388228-64388247 | Msa0177430:intron | 55.0% | |
| GTGGAGAAGAAGGATCCCAG+TGG | - | chr1_4:64388247-64388266 | Msa0177430:intron | 55.0% | |
| GAGAAGAAGGATCCCAGTGG+AGG | - | chr1_4:64388250-64388269 | Msa0177430:intron | 55.0% | |
| GGTCTGCTTAAGTCCTCCAC+TGG | + | chr1_4:64388266-64388285 | None:intergenic | 55.0% | |
| !! | ACTGGGTTCTAGATCGACGG+TGG | - | chr1_4:64388386-64388405 | Msa0177430:five_prime_UTR | 55.0% |
| TCATTGATGCCCCCGGACAC+AGG | - | chr1_4:64387100-64387119 | Msa0177430:CDS | 60.0% | |
| CATTGATGCCCCCGGACACA+GGG | - | chr1_4:64387101-64387120 | Msa0177430:CDS | 60.0% | |
| AGTCGGAGGGGCTTGTCTGA+AGG | + | chr1_4:64387650-64387669 | None:intergenic | 60.0% | |
| GGCCCTTCCTGGTGACAATG+TGG | - | chr1_4:64387829-64387848 | Msa0177430:intron | 60.0% | |
| CTCCAAGGATGACCCAGCCA+AGG | - | chr1_4:64387910-64387929 | Msa0177430:intron | 60.0% | |
| GATTCCCACCAAGCCCATGG+TGG | - | chr1_4:64388138-64388157 | Msa0177430:intron | 60.0% | |
| CTCAACCACCATGGGCTTGG+TGG | + | chr1_4:64388146-64388165 | None:intergenic | 60.0% | |
| ACAGCAAAACGGCCGAGTGG+AGG | + | chr1_4:64388184-64388203 | None:intergenic | 60.0% | |
| GCCCCTCCGACTACCACTAC+AGG | - | chr1_4:64387658-64387677 | Msa0177430:intron | 65.0% | |
| GCTCTCACAGAGGCCCTTCC+TGG | - | chr1_4:64387818-64387837 | Msa0177430:intron | 65.0% | |
| CCAGTCTCGACACGCCCCAC+AGG | + | chr1_4:64387716-64387735 | None:intergenic | 70.0% | |
| CCTGTGGGGCGTGTCGAGAC+TGG | - | chr1_4:64387713-64387732 | Msa0177430:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 64385787 | 64388440 | 64385787 | ID=Msa0177430;Name=Msa0177430 |
| chr1_4 | mRNA | 64385787 | 64388440 | 64385787 | ID=Msa0177430-mRNA-1;Parent=Msa0177430;Name=Msa0177430-mRNA-1;_AED=0.24;_eAED=0.24;_QI=200|1|1|1|0.33|0|4|96|448 |
| chr1_4 | exon | 64385787 | 64385815 | 64385787 | ID=Msa0177430-mRNA-1:exon:20922;Parent=Msa0177430-mRNA-1 |
| chr1_4 | exon | 64385851 | 64386802 | 64385851 | ID=Msa0177430-mRNA-1:exon:20921;Parent=Msa0177430-mRNA-1 |
| chr1_4 | exon | 64386931 | 64387425 | 64386931 | ID=Msa0177430-mRNA-1:exon:20920;Parent=Msa0177430-mRNA-1 |
| chr1_4 | exon | 64388274 | 64388440 | 64388274 | ID=Msa0177430-mRNA-1:exon:20919;Parent=Msa0177430-mRNA-1 |
| chr1_4 | five_prime_UTR | 64388274 | 64388440 | 64388274 | ID=Msa0177430-mRNA-1:five_prime_utr;Parent=Msa0177430-mRNA-1 |
| chr1_4 | five_prime_UTR | 64387393 | 64387425 | 64387393 | ID=Msa0177430-mRNA-1:five_prime_utr;Parent=Msa0177430-mRNA-1 |
| chr1_4 | CDS | 64386931 | 64387392 | 64386931 | ID=Msa0177430-mRNA-1:cds;Parent=Msa0177430-mRNA-1 |
| chr1_4 | CDS | 64385918 | 64386802 | 64385918 | ID=Msa0177430-mRNA-1:cds;Parent=Msa0177430-mRNA-1 |
| chr1_4 | three_prime_UTR | 64385851 | 64385917 | 64385851 | ID=Msa0177430-mRNA-1:three_prime_utr;Parent=Msa0177430-mRNA-1 |
| chr1_4 | three_prime_UTR | 64385787 | 64385815 | 64385787 | ID=Msa0177430-mRNA-1:three_prime_utr;Parent=Msa0177430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
