AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1438480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438480 MtrunA17_Chr1g0200071 99.554 448 2 0 1 448 1 448 0.0 916
Msa1438480 MtrunA17_Chr1g0200091 99.554 448 2 0 1 448 1 448 0.0 916
Msa1438480 MtrunA17_Chr1g0200121 99.330 448 3 0 1 448 1 448 0.0 915
Msa1438480 MtrunA17_Chr6g0458111 96.652 448 14 1 1 448 1 447 0.0 896
Msa1438480 MtrunA17_Chr6g0458091 96.652 448 14 1 1 448 1 447 0.0 896
Msa1438480 MtrunA17_Chr4g0005781 96.205 448 16 1 1 448 1 447 0.0 890
Msa1438480 MtrunA17_Chr1g0150331 91.353 451 10 2 1 448 1 425 0.0 825
Msa1438480 MtrunA17_Chr1g0193591 81.674 442 81 0 1 442 1 442 0.0 746
Msa1438480 MtrunA17_Chr1g0204031 82.151 437 73 3 1 437 1 432 0.0 736
Msa1438480 MtrunA17_Chr1g0156421 79.263 434 90 0 1 434 1 434 0.0 728
Msa1438480 MtrunA17_Chr8g0340771 79.733 449 89 1 1 447 1 449 0.0 723
Msa1438480 MtrunA17_Chr5g0415391 72.796 397 108 0 39 435 1 397 0.0 595
Msa1438480 MtrunA17_Chr1g0196251 69.727 403 94 2 4 405 5 380 0.0 576
Msa1438480 MtrunA17_Chr8g0336511 78.593 327 69 1 1 326 66 392 0.0 543
Msa1438480 MtrunA17_Chr2g0319341 73.952 334 85 1 102 433 1 334 0.0 516
Msa1438480 MtrunA17_Chr2g0298371 68.923 325 82 2 102 424 1 308 1.91e-161 457
Msa1438480 MtrunA17_Chr1g0210931 63.087 298 56 4 155 447 1 249 1.03e-118 347
Msa1438480 MtrunA17_Chr8g0340371 70.124 241 69 2 1 240 1 239 1.57e-118 346
Msa1438480 MtrunA17_Chr2g0318291 71.681 226 59 3 1 223 1 224 3.14e-112 329
Msa1438480 MtrunA17_Chr6g0483121 37.963 432 254 6 5 428 89 514 4.78e-97 301
Msa1438480 MtrunA17_Chr8g0392641 37.963 432 258 6 4 429 143 570 1.96e-92 290
Msa1438480 MtrunA17_Chr8g0380091 36.028 433 268 6 7 433 275 704 2.08e-91 291
Msa1438480 MtrunA17_Chr1g0204041 86.452 155 21 0 1 155 1 155 1.03e-90 272
Msa1438480 MtrunA17_Chr1g0200111 75.706 177 33 1 264 430 1 177 5.68e-87 263
Msa1438480 MtrunA17_Chr2g0318281 66.010 203 62 1 243 445 5 200 2.07e-84 258
Msa1438480 MtrunA17_Chr1g0156411 81.429 140 26 0 6 145 10 149 1.13e-78 241
Msa1438480 MtrunA17_Chr8g0340361 60.541 185 57 2 264 433 1 184 3.75e-66 210
Msa1438480 MtrunA17_Chr4g0026961 54.639 194 72 4 195 385 32 212 1.72e-58 191
Msa1438480 MtrunA17_Chr4g0026961 76.190 42 10 0 1 42 1 42 6.46e-13 67.8
Msa1438480 MtrunA17_Chr2g0298381 77.778 99 22 0 1 99 1 99 5.87e-48 159
Msa1438480 MtrunA17_Chr8g0341021 76.471 102 24 0 3 104 4 105 1.28e-47 159
Msa1438480 MtrunA17_Chr7g0259481 30.365 438 245 14 3 429 59 447 1.23e-45 164
Msa1438480 MtrunA17_Chr3g0116821 29.955 444 250 15 3 429 88 487 1.24e-40 151
Msa1438480 MtrunA17_Chr1g0211481 79.747 79 16 0 5 83 4 82 3.58e-36 129
Msa1438480 MtrunA17_Chr2g0319351 82.192 73 13 0 5 77 5 77 4.40e-35 125
Msa1438480 MtrunA17_Chr1g0200101 89.231 65 7 0 172 236 49 113 7.50e-35 125
Msa1438480 MtrunA17_Chr1g0200101 73.469 49 13 0 21 69 2 50 9.15e-17 76.3
Msa1438480 MtrunA17_Chr2g0287231 32.389 247 135 6 1 244 10 227 8.62e-31 118
Msa1438480 MtrunA17_Chr8g0341041 67.089 79 26 0 213 291 2 80 8.29e-28 108
Msa1438480 MtrunA17_Chr8g0341041 63.793 58 21 0 375 432 101 158 1.44e-17 80.1
Msa1438480 MtrunA17_Chr7g0261801 69.697 66 17 1 155 220 1 63 4.02e-24 95.9
Msa1438480 MtrunA17_Chr3g0130991 26.471 272 143 9 9 272 85 307 1.05e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438480 AT1G07920.1 95.302 447 20 1 1 447 1 446 0.0 884
Msa1438480 AT1G07940.4 95.302 447 20 1 1 447 1 446 0.0 884
Msa1438480 AT1G07940.1 95.302 447 20 1 1 447 1 446 0.0 884
Msa1438480 AT1G07940.2 95.302 447 20 1 1 447 1 446 0.0 884
Msa1438480 AT1G07940.3 95.302 447 20 1 1 447 1 446 0.0 884
Msa1438480 AT5G60390.3 95.302 447 20 1 1 447 1 446 0.0 884
Msa1438480 AT5G60390.1 95.302 447 20 1 1 447 1 446 0.0 884
Msa1438480 AT5G60390.2 95.302 447 20 1 1 447 1 446 0.0 884
Msa1438480 AT1G07930.1 95.302 447 20 1 1 447 1 446 0.0 884
Msa1438480 AT1G07930.2 98.824 255 3 0 1 255 1 255 0.0 530
Msa1438480 AT1G07930.2 88.034 117 13 1 331 447 254 369 1.13e-65 215
Msa1438480 AT1G18070.1 37.647 425 257 5 5 424 99 520 3.50e-94 294
Msa1438480 AT1G18070.2 37.647 425 257 5 5 424 99 520 3.50e-94 294
Msa1438480 AT1G18070.3 36.927 436 256 6 5 424 99 531 4.09e-91 286
Msa1438480 AT5G10630.1 35.765 425 265 5 7 426 239 660 2.27e-90 288
Msa1438480 AT5G10630.5 35.765 425 265 5 7 426 240 661 2.32e-90 288
Msa1438480 AT5G10630.2 35.765 425 265 5 7 426 240 661 2.32e-90 288
Msa1438480 AT5G10630.3 35.765 425 265 5 7 426 310 731 1.32e-89 288
Msa1438480 AT5G10630.4 35.765 425 265 5 7 426 315 736 1.39e-89 288
Msa1438480 AT1G35550.1 78.641 103 22 0 335 437 1 103 1.62e-53 174
Msa1438480 AT4G02930.1 30.296 439 245 15 3 429 63 452 7.41e-44 160
Msa1438480 AT4G20360.1 30.137 438 257 10 3 429 75 474 1.70e-43 159
Msa1438480 AT4G20360.2 30.137 438 257 10 3 429 75 474 1.70e-43 159
Msa1438480 AT2G31060.3 25.000 264 160 8 9 263 61 295 3.24e-12 68.9
Msa1438480 AT5G08650.1 26.667 270 145 10 9 272 88 310 2.26e-11 66.6
Msa1438480 AT5G08650.2 26.667 270 145 10 9 272 88 310 2.33e-11 66.2
Msa1438480 AT2G31060.2 24.615 260 162 7 9 263 61 291 4.67e-11 65.5

Find 188 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACCATTCTTCAAGAATT+TGG 0.066665 tig0028560:-35348 None:intergenic
TAATTCTATCAAATTGTTTC+TGG 0.156599 tig0028560:+36265 Msa1438480:three_prime_UTR
ATCATAGTTATTACAATAAA+TGG 0.259832 tig0028560:+35594 Msa1438480:three_prime_UTR
TGCTCTACCACTGAGCTATA+AGG 0.259926 tig0028560:-33807 None:intergenic
GCTCTCCTTGCTTTCACTCT+TGG 0.289982 tig0028560:+34504 Msa1438480:CDS
CAAACTATTACAAATAAAAT+AGG 0.299324 tig0028560:+36060 Msa1438480:three_prime_UTR
GTCTACAAGATTGGAGGAAT+TGG 0.315206 tig0028560:+34933 Msa1438480:CDS
GCCTCTTAGGCTCATTGATT+TGG 0.315866 tig0028560:-34875 None:intergenic
CTTAGTAAACTCAATGAGTT+TGG 0.317766 tig0028560:+36154 Msa1438480:three_prime_UTR
TTATTACAATAAATGGTCTT+TGG 0.319176 tig0028560:+35601 Msa1438480:three_prime_UTR
TGTCAAGAATGTTGCTGTTA+AGG 0.325240 tig0028560:+35109 Msa1438480:CDS
AATTTCTTATTGCTTGAGTT+TGG 0.328852 tig0028560:-35967 None:intergenic
TGGACAATGAACAAATAAAT+AGG 0.329863 tig0028560:+36174 Msa1438480:three_prime_UTR
TCACCATTCTTCAAGAATTT+GGG 0.331757 tig0028560:-35347 None:intergenic
ATAGCCAACCTTCTTCAAAT+AGG 0.332380 tig0028560:-34739 None:intergenic
TTGCGCAGCTTTCCTCTTCA+AGG 0.350006 tig0028560:+32802 Msa1438480:five_prime_UTR
ATTCCATTTGTTCCCATCTC+TGG 0.368209 tig0028560:+34774 Msa1438480:CDS
CTTCTTCTTCAATGCTGACT+TGG 0.371330 tig0028560:-35534 None:intergenic
CTCCTTGGCTGGGTCATCCT+TGG 0.371873 tig0028560:-35162 None:intergenic
ATATCTACCCTTGGAGTACT+TGG 0.380807 tig0028560:-34691 None:intergenic
ACTAAGATTGATAGGCGTTC+TGG 0.382761 tig0028560:+35305 Msa1438480:CDS
AATAAATGGTCTTTGGTCCT+TGG 0.384333 tig0028560:+35608 Msa1438480:three_prime_UTR
GCTCTAACAGAGGCCCTTCC+TGG 0.389893 tig0028560:+35068 Msa1438480:CDS
AAGCTAGCAGCCTCCTTGGC+TGG 0.398839 tig0028560:-35173 None:intergenic
GTAGCGGTCCATCAATTTCA+TGG 0.402233 tig0028560:-36119 None:intergenic
GGATCCCAGTGGAGGACTTA+AGG 0.415493 tig0028560:+35508 Msa1438480:CDS
GCTCTACCACTGAGCTATAA+GGG 0.416492 tig0028560:-33806 None:intergenic
GCAAAAGTGACAACCATTCC+AGG 0.418006 tig0028560:-34996 None:intergenic
CTCATCATTGATTCCACTAC+TGG 0.419293 tig0028560:+34435 Msa1438480:CDS
GAGGTGTGGCAGTCAAGAAC+AGG 0.420700 tig0028560:-35251 None:intergenic
ATGAATCACCCTGGCCAGAT+TGG 0.425183 tig0028560:+35215 Msa1438480:CDS
CCTGTGGGGCGTGTCGAGAC+TGG 0.431830 tig0028560:+34963 Msa1438480:CDS
CACCCTGGCCAGATTGGAAA+TGG 0.432985 tig0028560:+35221 Msa1438480:CDS
GCCCCTTCGACTACCACTTC+AGG 0.433104 tig0028560:+34908 Msa1438480:CDS
GTCATCGGCCATGTTGACTC+TGG 0.440627 tig0028560:+34129 Msa1438480:CDS
AGGACTAATGGGTAAGGAAA+AGG 0.440646 tig0028560:+34089 Msa1438480:exon
ACATTCTCATCCTTGCGGCT+AGG 0.443267 tig0028560:+32775 Msa1438480:five_prime_UTR
CATTCTCATCCTTGCGGCTA+GGG 0.444010 tig0028560:+32776 Msa1438480:five_prime_UTR
AGCGTTCATTCAAGTATGCC+TGG 0.444655 tig0028560:+34247 Msa1438480:CDS
GGGCATAGCCATTTCCAATC+TGG 0.448022 tig0028560:-35229 None:intergenic
AAACCAGAGATGGGAACAAA+TGG 0.449170 tig0028560:-34777 None:intergenic
AAAATAGGTAACATAGATTC+CGG 0.454200 tig0028560:+36075 Msa1438480:three_prime_UTR
ACTTCAGTTGTCAGTCCAGT+AGG 0.456008 tig0028560:-35020 None:intergenic
CTTCAGGATGTCTACAAGAT+TGG 0.458119 tig0028560:+34924 Msa1438480:CDS
GATTCCAACCATGAAATTGA+TGG 0.461383 tig0028560:+36111 Msa1438480:three_prime_UTR
AGTCTCAACCACCATGGGCT+TGG 0.462350 tig0028560:-35396 None:intergenic
ACCAAATCAATGAGCCTAAG+AGG 0.463105 tig0028560:+34874 Msa1438480:CDS
TGGGTCATCCTTGGAGTTTG+AGG 0.465051 tig0028560:-35153 None:intergenic
CACAAACCTTGACTGGTACA+AGG 0.466653 tig0028560:+34827 Msa1438480:CDS
CTCAACCACCATGGGCTTGG+TGG 0.468734 tig0028560:-35393 None:intergenic
TAGGCTCATTGATTTGGTCA+AGG 0.472707 tig0028560:-34869 None:intergenic
GGCTTGTCTGAAGGCCTCTT+AGG 0.473139 tig0028560:-34888 None:intergenic
TAGCCATTTCCAATCTGGCC+AGG 0.474048 tig0028560:-35224 None:intergenic
AGGCTCATTGATTTGGTCAA+GGG 0.475242 tig0028560:-34868 None:intergenic
TGCACTGTCATTGATGCCCC+TGG 0.477178 tig0028560:+34354 Msa1438480:CDS
TTAATGAAATCCCTGTGTCC+AGG 0.479234 tig0028560:-34372 None:intergenic
AGTAAAGCTAGCAGCCTCCT+TGG 0.479718 tig0028560:-35177 None:intergenic
AGTCAGCTTTGTTAGATGGC+AGG 0.481378 tig0028560:-35993 None:intergenic
TCACCATTGACATTGCTCTC+TGG 0.481623 tig0028560:+34307 Msa1438480:CDS
AGCAGGATGATCTATCTAGT+TGG 0.481793 tig0028560:+35564 Msa1438480:three_prime_UTR
AGCTTGTTACTAAGATTGAT+AGG 0.481965 tig0028560:+35297 Msa1438480:CDS
ACAGTCAGCTTGGGATGTTC+CGG 0.483896 tig0028560:-34406 None:intergenic
AGCTAGCAGCCTCCTTGGCT+GGG 0.486002 tig0028560:-35172 None:intergenic
GCAGGATGATCTATCTAGTT+GGG 0.489479 tig0028560:+35565 Msa1438480:three_prime_UTR
TCATCCTATTTGAAGAAGGT+TGG 0.491235 tig0028560:+34735 Msa1438480:CDS
CTTGTACCAGTCAAGGTTTG+TGG 0.492698 tig0028560:-34826 None:intergenic
GATTGATAGGCGTTCTGGTA+AGG 0.495592 tig0028560:+35310 Msa1438480:CDS
ATCTCCCTCAAAACCAGAGA+TGG 0.496573 tig0028560:-34787 None:intergenic
TGAGAACGGCACAGTCAGCT+TGG 0.498317 tig0028560:-34416 None:intergenic
CTGACCATCCTTAGAAATAC+CGG 0.501461 tig0028560:-34469 None:intergenic
AGTTTCATCCTATTTGAAGA+AGG 0.501588 tig0028560:+34731 Msa1438480:CDS
ATCATTGATTCCACTACTGG+TGG 0.502099 tig0028560:+34438 Msa1438480:CDS
GAGAACGGCACAGTCAGCTT+GGG 0.505334 tig0028560:-34415 None:intergenic
GTCAGCTTTGTTAGATGGCA+GGG 0.505354 tig0028560:-35992 None:intergenic
CTTCAGTTGTCAGTCCAGTA+GGG 0.506099 tig0028560:-35019 None:intergenic
AATTTCATCATATCTACCCT+TGG 0.508007 tig0028560:-34700 None:intergenic
AATGACAGTGCAGTAGTACT+TGG 0.509426 tig0028560:-34343 None:intergenic
CATCAAGGCTGTGGAGAAGA+AGG 0.510945 tig0028560:+35487 Msa1438480:CDS
AGGAATTGGAACTGTGCCTG+TGG 0.517140 tig0028560:+34947 Msa1438480:CDS
GGTCACCTTAAGTCCTCCAC+TGG 0.520286 tig0028560:-35513 None:intergenic
GAAGAAGAAGTGAACCGAGC+AGG 0.523086 tig0028560:+35547 Msa1438480:exon
CAGGATGTCTACAAGATTGG+AGG 0.523217 tig0028560:+34927 Msa1438480:CDS
TCTTCTAAAGAGAGATAAGC+GGG 0.525356 tig0028560:-36297 None:intergenic
TAATGAAATCCCTGTGTCCA+GGG 0.528272 tig0028560:-34371 None:intergenic
GAGCCCAAATTCTTGAAGAA+TGG 0.528480 tig0028560:+35344 Msa1438480:CDS
TCCCACATTGTCACCAGGAA+GGG 0.528721 tig0028560:-35081 None:intergenic
CGGTCCATCAATTTCATGGT+TGG 0.529458 tig0028560:-36115 None:intergenic
CATTGATGCCCCTGGACACA+GGG 0.535845 tig0028560:+34362 Msa1438480:CDS
GGAATTGGAACTGTGCCTGT+GGG 0.536194 tig0028560:+34948 Msa1438480:CDS
TCATTGATGCCCCTGGACAC+AGG 0.539611 tig0028560:+34361 Msa1438480:CDS
ATAAATAGGAAATACGATCC+TGG 0.539894 tig0028560:+36188 Msa1438480:three_prime_UTR
CTTCCAGAGAGCAATGTCAA+TGG 0.541189 tig0028560:-34310 None:intergenic
CATATCAACATTGTGGTCAT+CGG 0.541947 tig0028560:+34114 Msa1438480:CDS
AGTCGAAGGGGCTTGTCTGA+AGG 0.542120 tig0028560:-34897 None:intergenic
CACTTGATCTACAAGCTTGG+AGG 0.545798 tig0028560:+34171 Msa1438480:CDS
GGCTTCAAAACCACCAGTAG+TGG 0.551737 tig0028560:-34448 None:intergenic
TGTGGCTGTTGGCGTCATCA+AGG 0.552638 tig0028560:+35472 Msa1438480:CDS
AAGAGAGAATTACCTTGAAG+AGG 0.552753 tig0028560:-32814 None:intergenic
GGTCACTTGATCTACAAGCT+TGG 0.555547 tig0028560:+34168 Msa1438480:CDS
CCAGTCTCGACACGCCCCAC+AGG 0.557031 tig0028560:-34963 None:intergenic
TCAAGGGCCTCAAGAAGGGT+TGG 0.557590 tig0028560:-34852 None:intergenic
TCAACCACCATGGGCTTGGT+GGG 0.557624 tig0028560:-35392 None:intergenic
TTGGTCAAGGGCCTCAAGAA+GGG 0.558003 tig0028560:-34856 None:intergenic
TTGGACCCTTGTACCAGTCA+AGG 0.558366 tig0028560:-34833 None:intergenic
AAGCAAGGAGAGCATGTTCA+CGG 0.559179 tig0028560:-34494 None:intergenic
AGCGCTCCACAAACCTTGAC+TGG 0.559246 tig0028560:+34820 Msa1438480:CDS
CTCAAGGCTGAACGTGAAAG+AGG 0.559327 tig0028560:+34282 Msa1438480:CDS
TTTGGTCAAGGGCCTCAAGA+AGG 0.560467 tig0028560:-34857 None:intergenic
TTCTTGAAGAATGGTGATGC+TGG 0.561159 tig0028560:+35353 Msa1438480:CDS
GGAATCTCCACTCTATTGAC+CGG 0.562074 tig0028560:-36094 None:intergenic
TCTGGGAAATCAACCACCAC+TGG 0.562550 tig0028560:+34147 Msa1438480:CDS
GAAGCCGGTATTTCTAAGGA+TGG 0.564413 tig0028560:+34465 Msa1438480:CDS
GTAGCATATCCGCAAGACCT+TGG 0.566509 tig0028560:+36030 Msa1438480:three_prime_UTR
ACAAACCTTGACTGGTACAA+GGG 0.567625 tig0028560:+34828 Msa1438480:CDS
TCATCGGCCATGTTGACTCT+GGG 0.571507 tig0028560:+34130 Msa1438480:CDS
TTCATTAAGAACATGATCAC+CGG 0.572337 tig0028560:+34387 Msa1438480:CDS
AGCAAGGAGAGCATGTTCAC+GGG 0.572470 tig0028560:-34493 None:intergenic
GAGAAAGTCTCAACCACCAT+GGG 0.575954 tig0028560:-35401 None:intergenic
ATCCTGAAGTGGTAGTCGAA+GGG 0.576252 tig0028560:-34910 None:intergenic
CTTGAGCTTGTCAAGGACCC+AGG 0.577041 tig0028560:-34265 None:intergenic
TGAATTGAACCAAGGTCTTG+CGG 0.577239 tig0028560:-36039 None:intergenic
TATCTACCCTTGGAGTACTT+GGG 0.580849 tig0028560:-34690 None:intergenic
GCATCAGTCTTGTAAACTGA+AGG 0.582139 tig0028560:+33827 Msa1438480:five_prime_UTR
TTGACAAGCGTGTCATTGAG+AGG 0.584549 tig0028560:+34196 Msa1438480:CDS
ATCCCACATTGTCACCAGGA+AGG 0.585536 tig0028560:-35082 None:intergenic
GAGACTGGTGTCATAAAACC+TGG 0.585699 tig0028560:+34978 Msa1438480:CDS
CTGGGTCCTTGACAAGCTCA+AGG 0.585742 tig0028560:+34266 Msa1438480:CDS
GGCCCTTCCTGGTGACAATG+TGG 0.586985 tig0028560:+35079 Msa1438480:CDS
GAGAATGTGAGAGTGGAGAG+TGG 0.588313 tig0028560:-32760 None:intergenic
CTGTTAAGGATCTCAAGCGT+GGG 0.589274 tig0028560:+35123 Msa1438480:CDS
CATCCTGAAGTGGTAGTCGA+AGG 0.591035 tig0028560:-34911 None:intergenic
TTCTCTGAATATCCTCCACT+CGG 0.591172 tig0028560:+35419 Msa1438480:CDS
GCCCTTCCTGGTGACAATGT+GGG 0.592402 tig0028560:+35080 Msa1438480:CDS
TTGATTTCCCAGAGTCAACA+TGG 0.596206 tig0028560:-34137 None:intergenic
TAGATATGATGAAATTGTGA+AGG 0.599770 tig0028560:+34707 Msa1438480:CDS
GCATGTCTCTAACAGCAAAA+CGG 0.600985 tig0028560:-35442 None:intergenic
CTCCAAGGATGACCCAGCCA+AGG 0.602045 tig0028560:+35160 Msa1438480:CDS
GCGTTCATTCAAGTATGCCT+GGG 0.605879 tig0028560:+34248 Msa1438480:CDS
GTCACCTTAAGTCCTCCACT+GGG 0.606003 tig0028560:-35512 None:intergenic
TCTCCCTCAAAACCAGAGAT+GGG 0.607478 tig0028560:-34786 None:intergenic
ATAGATTCCGGTCAATAGAG+TGG 0.610318 tig0028560:+36087 Msa1438480:three_prime_UTR
GATGATTCCCACCAAGCCCA+TGG 0.611182 tig0028560:+35385 Msa1438480:CDS
TACTACACCCAAGTACTCCA+AGG 0.613862 tig0028560:+34683 Msa1438480:CDS
CTCTCACATTCTCATCCTTG+CGG 0.614676 tig0028560:+32770 Msa1438480:five_prime_UTR
AAAGGTTCATATCAACATTG+TGG 0.619488 tig0028560:+34107 Msa1438480:CDS
CAAGGGTCCAACCCTTCTTG+AGG 0.620566 tig0028560:+34845 Msa1438480:CDS
TCACACCAAGAGTGAAAGCA+AGG 0.621193 tig0028560:-34509 None:intergenic
ATCTTGTAGACATCCTGAAG+TGG 0.621388 tig0028560:-34921 None:intergenic
GCTGTTAAGGATCTCAAGCG+TGG 0.622485 tig0028560:+35122 Msa1438480:CDS
TGTTGGCGTCATCAAGGCTG+TGG 0.622557 tig0028560:+35478 Msa1438480:CDS
TTCAGTTGTCAGTCCAGTAG+GGG 0.622733 tig0028560:-35018 None:intergenic
AGCCATTTCCAATCTGGCCA+GGG 0.623271 tig0028560:-35223 None:intergenic
GACAACTGAAGTCAAGTCTG+TGG 0.624055 tig0028560:+35031 Msa1438480:CDS
CAAGGATGAGAATGTGAGAG+TGG 0.624166 tig0028560:-32767 None:intergenic
ACAGCAAAACGGCCGAGTGG+AGG 0.624787 tig0028560:-35431 None:intergenic
TGGTGTCATAAAACCTGGAA+TGG 0.625384 tig0028560:+34983 Msa1438480:CDS
TAATAGTTTGAATTGAACCA+AGG 0.627102 tig0028560:-36047 None:intergenic
TCCTGAAGTGGTAGTCGAAG+GGG 0.627928 tig0028560:-34909 None:intergenic
AGGTGTGGCAGTCAAGAACA+GGG 0.628146 tig0028560:-35250 None:intergenic
GTTCAGCCTTGAGCTTGTCA+AGG 0.628494 tig0028560:-34272 None:intergenic
GACGAGAAATAGAAATACCA+AGG 0.629840 tig0028560:-35625 None:intergenic
GCATCATGAAGCTCTAACAG+AGG 0.633418 tig0028560:+35058 Msa1438480:CDS
GTATGTTGCCTCAAACTCCA+AGG 0.633897 tig0028560:+35145 Msa1438480:CDS
AGAGAAAGTCTCAACCACCA+TGG 0.641605 tig0028560:-35402 None:intergenic
ATGCGTCAAACTGTGGCTGT+TGG 0.643159 tig0028560:+35461 Msa1438480:CDS
ACTAGATAGATCATCCTGCT+CGG 0.643222 tig0028560:-35561 None:intergenic
TTCTGGTAAGGAGATTGAGA+AGG 0.643722 tig0028560:+35322 Msa1438480:CDS
GAATTGGAACTGTGCCTGTG+GGG 0.644316 tig0028560:+34949 Msa1438480:CDS
AGTGGAATCAATGATGAGAA+CGG 0.644693 tig0028560:-34430 None:intergenic
TAAGAGACAAATAAATGTAG+CGG 0.648524 tig0028560:-36135 None:intergenic
TTCTTCTAAAGAGAGATAAG+CGG 0.652423 tig0028560:-36298 None:intergenic
AAACTTGACAGCAATGTGAG+AGG 0.653594 tig0028560:-35270 None:intergenic
AATGAAATCCCTGTGTCCAG+GGG 0.656838 tig0028560:-34370 None:intergenic
TTAAATCCCACATTGTCACC+AGG 0.657091 tig0028560:-35086 None:intergenic
AATGATCTGCTGTTGCAACA+AGG 0.659392 tig0028560:+34536 Msa1438480:CDS
CAAGGATGACCCAGCCAAGG+AGG 0.659665 tig0028560:+35163 Msa1438480:CDS
GAGAAGAAGGATCCCAGTGG+AGG 0.667988 tig0028560:+35500 Msa1438480:CDS
ACTACACCCAAGTACTCCAA+GGG 0.678033 tig0028560:+34684 Msa1438480:CDS
CTTGTAGATCAAGTGACCAG+TGG 0.682705 tig0028560:-34163 None:intergenic
TAGAGACATGCGTCAAACTG+TGG 0.690315 tig0028560:+35454 Msa1438480:CDS
CTAACAGCAAAACGGCCGAG+TGG 0.692072 tig0028560:-35434 None:intergenic
GTAGATCAAGTGACCAGTGG+TGG 0.699002 tig0028560:-34160 None:intergenic
GTGATCATAATGAATCACCC+TGG 0.699056 tig0028560:+35206 Msa1438480:CDS
AACTTGCCCTTATAGCTCAG+TGG 0.706507 tig0028560:+33800 Msa1438480:five_prime_UTR
GATTCCCACCAAGCCCATGG+TGG 0.723849 tig0028560:+35388 Msa1438480:CDS
GGTGTGGCAGTCAAGAACAG+GGG 0.727394 tig0028560:-35249 None:intergenic
TGACAGCAATGTGAGAGGTG+TGG 0.729691 tig0028560:-35265 None:intergenic
GTGGAGAAGAAGGATCCCAG+TGG 0.734762 tig0028560:+35497 Msa1438480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGTTTTCTTTTTGATT+TGG + tig0028560:32949-32968 Msa1438480:intron 15.0%
!! GATAATTATTGTTATATTGT+TGG + tig0028560:33697-33716 Msa1438480:intron 15.0%
!! ATCATAGTTATTACAATAAA+TGG + tig0028560:35594-35613 Msa1438480:three_prime_UTR 15.0%
!! CAAACTATTACAAATAAAAT+AGG + tig0028560:36060-36079 Msa1438480:three_prime_UTR 15.0%
!! ATTCATAACAACAATTAATC+AGG - tig0028560:33010-33029 None:intergenic 20.0%
!! TGTTGTTATGAATTCATATA+CGG + tig0028560:33017-33036 Msa1438480:intron 20.0%
!!! AATCGTTTATGTTTTTGAAT+CGG + tig0028560:33044-33063 Msa1438480:intron 20.0%
!!! GTTTTAATCTTTTGTTATGA+AGG + tig0028560:33069-33088 Msa1438480:intron 20.0%
!!! TTATGAAGGTGTTAATTTTT+GGG + tig0028560:33083-33102 Msa1438480:intron 20.0%
!!! TCAATAATGGAATATGTATT+GGG - tig0028560:33462-33481 None:intergenic 20.0%
!!! TTGTTTTTTTTCAGCTTTTA+AGG + tig0028560:34069-34088 Msa1438480:five_prime_UTR 20.0%
!! AATCAAATATACAACTTCAA+GGG - tig0028560:34579-34598 None:intergenic 20.0%
!! TAATCAAATATACAACTTCA+AGG - tig0028560:34580-34599 None:intergenic 20.0%
!! TTATTACAATAAATGGTCTT+TGG + tig0028560:35601-35620 Msa1438480:three_prime_UTR 20.0%
!!! TTATTTTTGTGTTTATTCCT+TGG + tig0028560:35850-35869 Msa1438480:intron 20.0%
!!! AGTTTGGTTTGATTATAATA+GGG - tig0028560:35954-35973 None:intergenic 20.0%
!! TAATTCTATCAAATTGTTTC+TGG + tig0028560:36265-36284 Msa1438480:three_prime_UTR 20.0%
!!! GTTATGAAGGTGTTAATTTT+TGG + tig0028560:33082-33101 Msa1438480:intron 25.0%
!!! TGTGTAAATTTGTTTGCTTT+TGG + tig0028560:33409-33428 Msa1438480:intron 25.0%
!!! GTGTAAATTTGTTTGCTTTT+GGG + tig0028560:33410-33429 Msa1438480:intron 25.0%
!! GTCAATAATGGAATATGTAT+TGG - tig0028560:33463-33482 None:intergenic 25.0%
! TACATATTCCATTATTGACA+TGG + tig0028560:33464-33483 Msa1438480:intron 25.0%
! AACTCTGACAAAAAAAAATG+AGG - tig0028560:33773-33792 None:intergenic 25.0%
!! TTCCTTTACTATTTTCTTTG+AGG + tig0028560:34013-34032 Msa1438480:intron 25.0%
! ATCAAATATACAACTTCAAG+GGG - tig0028560:34578-34597 None:intergenic 25.0%
! TAGATATGATGAAATTGTGA+AGG + tig0028560:34707-34726 Msa1438480:CDS 25.0%
! ATTATAATAGGGTAAACGAA+CGG - tig0028560:35943-35962 None:intergenic 25.0%
!!! GAGTTTGGTTTGATTATAAT+AGG - tig0028560:35955-35974 None:intergenic 25.0%
! AATTTCTTATTGCTTGAGTT+TGG - tig0028560:35970-35989 None:intergenic 25.0%
! TAATAGTTTGAATTGAACCA+AGG - tig0028560:36050-36069 None:intergenic 25.0%
! AAAATAGGTAACATAGATTC+CGG + tig0028560:36075-36094 Msa1438480:three_prime_UTR 25.0%
! TAAGAGACAAATAAATGTAG+CGG - tig0028560:36138-36157 None:intergenic 25.0%
! TGGACAATGAACAAATAAAT+AGG + tig0028560:36174-36193 Msa1438480:three_prime_UTR 25.0%
!!! AATTATGATTCGCTATTTTG+TGG - tig0028560:36250-36269 None:intergenic 25.0%
GTCAACAACACAATATAGAT+TGG - tig0028560:33217-33236 None:intergenic 30.0%
AACACACACATACACTTATT+TGG + tig0028560:33256-33275 Msa1438480:intron 30.0%
ACACACACATACACTTATTT+GGG + tig0028560:33257-33276 Msa1438480:intron 30.0%
CATGCTTCAAAAGAAAAAAG+GGG - tig0028560:33318-33337 None:intergenic 30.0%
GCATGCTTCAAAAGAAAAAA+GGG - tig0028560:33319-33338 None:intergenic 30.0%
AGCATGCTTCAAAAGAAAAA+AGG - tig0028560:33320-33339 None:intergenic 30.0%
! TGCTTGTTGAATTATTGACT+TGG + tig0028560:33361-33380 Msa1438480:intron 30.0%
TTCTATCACCATGTCAATAA+TGG - tig0028560:33475-33494 None:intergenic 30.0%
TATAAATCAGACATGCAATC+AGG - tig0028560:33570-33589 None:intergenic 30.0%
GACCTCAAAGAAAATAGTAA+AGG - tig0028560:34018-34037 None:intergenic 30.0%
! TGCTTATGCATAGTTTTCTT+TGG + tig0028560:34039-34058 Msa1438480:intron 30.0%
!! TTTCAGCTTTTAAGGACTAA+TGG + tig0028560:34077-34096 Msa1438480:exon 30.0%
!! TTCAGCTTTTAAGGACTAAT+GGG + tig0028560:34078-34097 Msa1438480:exon 30.0%
AAAGGTTCATATCAACATTG+TGG + tig0028560:34107-34126 Msa1438480:CDS 30.0%
TTCATTAAGAACATGATCAC+CGG + tig0028560:34387-34406 Msa1438480:CDS 30.0%
AATTTCATCATATCTACCCT+TGG - tig0028560:34703-34722 None:intergenic 30.0%
AGTTTCATCCTATTTGAAGA+AGG + tig0028560:34731-34750 Msa1438480:CDS 30.0%
! GAACAAATGGAATTTTGTCT+GGG - tig0028560:34767-34786 None:intergenic 30.0%
!! AGCTTGTTACTAAGATTGAT+AGG + tig0028560:35297-35316 Msa1438480:CDS 30.0%
TCACCATTCTTCAAGAATTT+GGG - tig0028560:35350-35369 None:intergenic 30.0%
ATCACCATTCTTCAAGAATT+TGG - tig0028560:35351-35370 None:intergenic 30.0%
!! AAAAAGTCAGCTTTGTTAGA+TGG - tig0028560:36000-36019 None:intergenic 30.0%
!! ATCTAACAAAGCTGACTTTT+TGG + tig0028560:35999-36018 Msa1438480:three_prime_UTR 30.0%
CTTAGTAAACTCAATGAGTT+TGG + tig0028560:36154-36173 Msa1438480:three_prime_UTR 30.0%
ATAAATAGGAAATACGATCC+TGG + tig0028560:36188-36207 Msa1438480:three_prime_UTR 30.0%
!!! TAGTTTTGATCTCATTATCC+AGG - tig0028560:36209-36228 None:intergenic 30.0%
! TTCTTCTAAAGAGAGATAAG+CGG - tig0028560:36301-36320 None:intergenic 30.0%
AAGAGAGAATTACCTTGAAG+AGG - tig0028560:32817-32836 None:intergenic 35.0%
TGCATGGGATCATTACAAAT+TGG + tig0028560:32922-32941 Msa1438480:intron 35.0%
TTACACACACATACTTGTTC+AGG + tig0028560:33612-33631 Msa1438480:intron 35.0%
ATTATCATCAGCATGCTTCA+AGG - tig0028560:33683-33702 None:intergenic 35.0%
!! CTTTTAAGGACTAATGGGTA+AGG + tig0028560:34083-34102 Msa1438480:exon 35.0%
CATATCAACATTGTGGTCAT+CGG + tig0028560:34114-34133 Msa1438480:CDS 35.0%
AGTGGAATCAATGATGAGAA+CGG - tig0028560:34433-34452 None:intergenic 35.0%
!!! TTTTGAAGCCGGTATTTCTA+AGG + tig0028560:34461-34480 Msa1438480:CDS 35.0%
ATCCATCTGTTCAAGATAGA+TGG - tig0028560:34661-34680 None:intergenic 35.0%
TCATCCTATTTGAAGAAGGT+TGG + tig0028560:34735-34754 Msa1438480:CDS 35.0%
ATAGCCAACCTTCTTCAAAT+AGG - tig0028560:34742-34761 None:intergenic 35.0%
! GGAACAAATGGAATTTTGTC+TGG - tig0028560:34768-34787 None:intergenic 35.0%
! TGTCAAGAATGTTGCTGTTA+AGG + tig0028560:35109-35128 Msa1438480:CDS 35.0%
AATAAATGGTCTTTGGTCCT+TGG + tig0028560:35608-35627 Msa1438480:three_prime_UTR 35.0%
GACGAGAAATAGAAATACCA+AGG - tig0028560:35628-35647 None:intergenic 35.0%
GAACAAAAGCTAAGAGATGA+AGG - tig0028560:35683-35702 None:intergenic 35.0%
!! TTAGCTTTTGTTCTCAGAAC+TGG + tig0028560:35690-35709 Msa1438480:intron 35.0%
! TAGCTTTTGTTCTCAGAACT+GGG + tig0028560:35691-35710 Msa1438480:intron 35.0%
! GTTGTGTCTAGTTTGAAACT+TGG + tig0028560:35766-35785 Msa1438480:intron 35.0%
! GGTACATGTCTCTATGTTTT+AGG + tig0028560:35894-35913 Msa1438480:intron 35.0%
GATTCCAACCATGAAATTGA+TGG + tig0028560:36111-36130 Msa1438480:three_prime_UTR 35.0%
! TCTTCTAAAGAGAGATAAGC+GGG - tig0028560:36300-36319 None:intergenic 35.0%
AGCTTATGTACGTGATTGCA+TGG + tig0028560:32906-32925 Msa1438480:intron 40.0%
GCTTATGTACGTGATTGCAT+GGG + tig0028560:32907-32926 Msa1438480:intron 40.0%
AATAGAGTAGAGTAACGCTG+TGG + tig0028560:33290-33309 Msa1438480:intron 40.0%
ATAGAGTAGAGTAACGCTGT+GGG + tig0028560:33291-33310 Msa1438480:intron 40.0%
! TTGTTCAGGAACTGACTCAA+TGG + tig0028560:33626-33645 Msa1438480:intron 40.0%
! TCAATGGAGTCCTTTTAACC+CGG + tig0028560:33642-33661 Msa1438480:intron 40.0%
TCAGCATGCTTCAAGGAAAA+CGG - tig0028560:33676-33695 None:intergenic 40.0%
! GCATCAGTCTTGTAAACTGA+AGG + tig0028560:33827-33846 Msa1438480:five_prime_UTR 40.0%
! CAAGTCTTATCCCACTAAGT+GGG - tig0028560:33903-33922 None:intergenic 40.0%
! AGGACTAATGGGTAAGGAAA+AGG + tig0028560:34089-34108 Msa1438480:exon 40.0%
TTGATTTCCCAGAGTCAACA+TGG - tig0028560:34140-34159 None:intergenic 40.0%
AATGACAGTGCAGTAGTACT+TGG - tig0028560:34346-34365 None:intergenic 40.0%
TAATGAAATCCCTGTGTCCA+GGG - tig0028560:34374-34393 None:intergenic 40.0%
TTAATGAAATCCCTGTGTCC+AGG - tig0028560:34375-34394 None:intergenic 40.0%
!! CTCATCATTGATTCCACTAC+TGG + tig0028560:34435-34454 Msa1438480:CDS 40.0%
!! ATCATTGATTCCACTACTGG+TGG + tig0028560:34438-34457 Msa1438480:CDS 40.0%
CTGACCATCCTTAGAAATAC+CGG - tig0028560:34472-34491 None:intergenic 40.0%
AATGATCTGCTGTTGCAACA+AGG + tig0028560:34536-34555 Msa1438480:CDS 40.0%
TGCCATCTATCTTGAACAGA+TGG + tig0028560:34656-34675 Msa1438480:intron 40.0%
! TATCTACCCTTGGAGTACTT+GGG - tig0028560:34693-34712 None:intergenic 40.0%
! ATATCTACCCTTGGAGTACT+TGG - tig0028560:34694-34713 None:intergenic 40.0%
ATTCCATTTGTTCCCATCTC+TGG + tig0028560:34774-34793 Msa1438480:CDS 40.0%
AAACCAGAGATGGGAACAAA+TGG - tig0028560:34780-34799 None:intergenic 40.0%
ACAAACCTTGACTGGTACAA+GGG + tig0028560:34828-34847 Msa1438480:CDS 40.0%
!! AGGCTCATTGATTTGGTCAA+GGG - tig0028560:34871-34890 None:intergenic 40.0%
!! TAGGCTCATTGATTTGGTCA+AGG - tig0028560:34872-34891 None:intergenic 40.0%
ACCAAATCAATGAGCCTAAG+AGG + tig0028560:34874-34893 Msa1438480:CDS 40.0%
ATCTTGTAGACATCCTGAAG+TGG - tig0028560:34924-34943 None:intergenic 40.0%
CTTCAGGATGTCTACAAGAT+TGG + tig0028560:34924-34943 Msa1438480:CDS 40.0%
GTCTACAAGATTGGAGGAAT+TGG + tig0028560:34933-34952 Msa1438480:CDS 40.0%
!! TGGTGTCATAAAACCTGGAA+TGG + tig0028560:34983-35002 Msa1438480:CDS 40.0%
TTAAATCCCACATTGTCACC+AGG - tig0028560:35089-35108 None:intergenic 40.0%
GTGATCATAATGAATCACCC+TGG + tig0028560:35206-35225 Msa1438480:CDS 40.0%
AAACTTGACAGCAATGTGAG+AGG - tig0028560:35273-35292 None:intergenic 40.0%
ACTAAGATTGATAGGCGTTC+TGG + tig0028560:35305-35324 Msa1438480:CDS 40.0%
TTCTGGTAAGGAGATTGAGA+AGG + tig0028560:35322-35341 Msa1438480:CDS 40.0%
GAGCCCAAATTCTTGAAGAA+TGG + tig0028560:35344-35363 Msa1438480:CDS 40.0%
! TTCTTGAAGAATGGTGATGC+TGG + tig0028560:35353-35372 Msa1438480:CDS 40.0%
TTCTCTGAATATCCTCCACT+CGG + tig0028560:35419-35438 Msa1438480:CDS 40.0%
GCATGTCTCTAACAGCAAAA+CGG - tig0028560:35445-35464 None:intergenic 40.0%
! CTTCTTCTTCAATGCTGACT+TGG - tig0028560:35537-35556 None:intergenic 40.0%
ACTAGATAGATCATCCTGCT+CGG - tig0028560:35564-35583 None:intergenic 40.0%
AGCAGGATGATCTATCTAGT+TGG + tig0028560:35564-35583 Msa1438480:three_prime_UTR 40.0%
GCAGGATGATCTATCTAGTT+GGG + tig0028560:35565-35584 Msa1438480:three_prime_UTR 40.0%
CAAAAGCTAAGAGATGAAGG+TGG - tig0028560:35680-35699 None:intergenic 40.0%
TAAGCAAAGCAGTAAGTTCC+AGG + tig0028560:35795-35814 Msa1438480:intron 40.0%
AAGGCTTAAACATCACACCA+AGG - tig0028560:35870-35889 None:intergenic 40.0%
TGTGATGTTTAAGCCTTTGC+TGG + tig0028560:35873-35892 Msa1438480:intron 40.0%
ATAGAGACATGTACCAGCAA+AGG - tig0028560:35889-35908 None:intergenic 40.0%
!! CAAAGCTGACTTTTTGGCAT+AGG + tig0028560:36005-36024 Msa1438480:three_prime_UTR 40.0%
TGAATTGAACCAAGGTCTTG+CGG - tig0028560:36042-36061 None:intergenic 40.0%
ATAGATTCCGGTCAATAGAG+TGG + tig0028560:36087-36106 Msa1438480:three_prime_UTR 40.0%
!!! CGCTATTTTGTGGATTAGAG+AGG - tig0028560:36240-36259 None:intergenic 40.0%
CAAGGATGAGAATGTGAGAG+TGG - tig0028560:32770-32789 None:intergenic 45.0%
CTCTCACATTCTCATCCTTG+CGG + tig0028560:32770-32789 Msa1438480:five_prime_UTR 45.0%
AGCATGCTTCAAGGAAAACG+GGG - tig0028560:33674-33693 None:intergenic 45.0%
CAGCATGCTTCAAGGAAAAC+GGG - tig0028560:33675-33694 None:intergenic 45.0%
AACTTGCCCTTATAGCTCAG+TGG + tig0028560:33800-33819 Msa1438480:five_prime_UTR 45.0%
GCTCTACCACTGAGCTATAA+GGG - tig0028560:33809-33828 None:intergenic 45.0%
TGCTCTACCACTGAGCTATA+AGG - tig0028560:33810-33829 None:intergenic 45.0%
! CCAAGTCTTATCCCACTAAG+TGG - tig0028560:33904-33923 None:intergenic 45.0%
CCACTTAGTGGGATAAGACT+TGG + tig0028560:33901-33920 Msa1438480:intron 45.0%
CTTGTAGATCAAGTGACCAG+TGG - tig0028560:34166-34185 None:intergenic 45.0%
GGTCACTTGATCTACAAGCT+TGG + tig0028560:34168-34187 Msa1438480:CDS 45.0%
CACTTGATCTACAAGCTTGG+AGG + tig0028560:34171-34190 Msa1438480:CDS 45.0%
! TTGACAAGCGTGTCATTGAG+AGG + tig0028560:34196-34215 Msa1438480:CDS 45.0%
AGCGTTCATTCAAGTATGCC+TGG + tig0028560:34247-34266 Msa1438480:CDS 45.0%
GCGTTCATTCAAGTATGCCT+GGG + tig0028560:34248-34267 Msa1438480:CDS 45.0%
TCACCATTGACATTGCTCTC+TGG + tig0028560:34307-34326 Msa1438480:CDS 45.0%
CTTCCAGAGAGCAATGTCAA+TGG - tig0028560:34313-34332 None:intergenic 45.0%
AATGAAATCCCTGTGTCCAG+GGG - tig0028560:34373-34392 None:intergenic 45.0%
!!! ACTACTGGTGGTTTTGAAGC+CGG + tig0028560:34450-34469 Msa1438480:CDS 45.0%
! GAAGCCGGTATTTCTAAGGA+TGG + tig0028560:34465-34484 Msa1438480:CDS 45.0%
! AAGCAAGGAGAGCATGTTCA+CGG - tig0028560:34497-34516 None:intergenic 45.0%
TCACACCAAGAGTGAAAGCA+AGG - tig0028560:34512-34531 None:intergenic 45.0%
TACTACACCCAAGTACTCCA+AGG + tig0028560:34683-34702 Msa1438480:CDS 45.0%
ACTACACCCAAGTACTCCAA+GGG + tig0028560:34684-34703 Msa1438480:CDS 45.0%
!!! TGTTCCCATCTCTGGTTTTG+AGG + tig0028560:34782-34801 Msa1438480:CDS 45.0%
!!! GTTCCCATCTCTGGTTTTGA+GGG + tig0028560:34783-34802 Msa1438480:CDS 45.0%
TCTCCCTCAAAACCAGAGAT+GGG - tig0028560:34789-34808 None:intergenic 45.0%
ATCTCCCTCAAAACCAGAGA+TGG - tig0028560:34790-34809 None:intergenic 45.0%
CTTGTACCAGTCAAGGTTTG+TGG - tig0028560:34829-34848 None:intergenic 45.0%
CACAAACCTTGACTGGTACA+AGG + tig0028560:34827-34846 Msa1438480:CDS 45.0%
! GCCTCTTAGGCTCATTGATT+TGG - tig0028560:34878-34897 None:intergenic 45.0%
ATCCTGAAGTGGTAGTCGAA+GGG - tig0028560:34913-34932 None:intergenic 45.0%
CAGGATGTCTACAAGATTGG+AGG + tig0028560:34927-34946 Msa1438480:CDS 45.0%
!! GAGACTGGTGTCATAAAACC+TGG + tig0028560:34978-34997 Msa1438480:CDS 45.0%
GCAAAAGTGACAACCATTCC+AGG - tig0028560:34999-35018 None:intergenic 45.0%
TTCAGTTGTCAGTCCAGTAG+GGG - tig0028560:35021-35040 None:intergenic 45.0%
CTTCAGTTGTCAGTCCAGTA+GGG - tig0028560:35022-35041 None:intergenic 45.0%
ACTTCAGTTGTCAGTCCAGT+AGG - tig0028560:35023-35042 None:intergenic 45.0%
GACAACTGAAGTCAAGTCTG+TGG + tig0028560:35031-35050 Msa1438480:CDS 45.0%
! GCATCATGAAGCTCTAACAG+AGG + tig0028560:35058-35077 Msa1438480:CDS 45.0%
CTGTTAAGGATCTCAAGCGT+GGG + tig0028560:35123-35142 Msa1438480:CDS 45.0%
GTATGTTGCCTCAAACTCCA+AGG + tig0028560:35145-35164 Msa1438480:CDS 45.0%
GATTGATAGGCGTTCTGGTA+AGG + tig0028560:35310-35329 Msa1438480:CDS 45.0%
GAGAAAGTCTCAACCACCAT+GGG - tig0028560:35404-35423 None:intergenic 45.0%
AGAGAAAGTCTCAACCACCA+TGG - tig0028560:35405-35424 None:intergenic 45.0%
TAGAGACATGCGTCAAACTG+TGG + tig0028560:35454-35473 Msa1438480:CDS 45.0%
!! AGAACTGGGTTCTAGATCGA+CGG + tig0028560:35705-35724 Msa1438480:intron 45.0%
GAAACAAAGTCAGCAAGTCC+TGG - tig0028560:35816-35835 None:intergenic 45.0%
!! GTCAGCTTTGTTAGATGGCA+GGG - tig0028560:35995-36014 None:intergenic 45.0%
!! AGTCAGCTTTGTTAGATGGC+AGG - tig0028560:35996-36015 None:intergenic 45.0%
GGAATCTCCACTCTATTGAC+CGG - tig0028560:36097-36116 None:intergenic 45.0%
CGGTCCATCAATTTCATGGT+TGG - tig0028560:36118-36137 None:intergenic 45.0%
GTAGCGGTCCATCAATTTCA+TGG - tig0028560:36122-36141 None:intergenic 45.0%
GAGAATGTGAGAGTGGAGAG+TGG - tig0028560:32763-32782 None:intergenic 50.0%
ACATTCTCATCCTTGCGGCT+AGG + tig0028560:32775-32794 Msa1438480:five_prime_UTR 50.0%
CATTCTCATCCTTGCGGCTA+GGG + tig0028560:32776-32795 Msa1438480:five_prime_UTR 50.0%
TTGCGCAGCTTTCCTCTTCA+AGG + tig0028560:32802-32821 Msa1438480:five_prime_UTR 50.0%
! TGGAGTCCTTTTAACCCGGT+TGG + tig0028560:33646-33665 Msa1438480:intron 50.0%
! GGAGTCCTTTTAACCCGGTT+GGG + tig0028560:33647-33666 Msa1438480:intron 50.0%
GCATGCTTCAAGGAAAACGG+GGG - tig0028560:33673-33692 None:intergenic 50.0%
TTGTTGCCAAGCCCACTTAG+TGG + tig0028560:33889-33908 Msa1438480:intron 50.0%
TGTTGCCAAGCCCACTTAGT+GGG + tig0028560:33890-33909 Msa1438480:intron 50.0%
! CTTATCCCACTAAGTGGGCT+TGG - tig0028560:33898-33917 None:intergenic 50.0%
!! TCATCGGCCATGTTGACTCT+GGG + tig0028560:34130-34149 Msa1438480:CDS 50.0%
TCTGGGAAATCAACCACCAC+TGG + tig0028560:34147-34166 Msa1438480:CDS 50.0%
GTAGATCAAGTGACCAGTGG+TGG - tig0028560:34163-34182 None:intergenic 50.0%
GTTCAGCCTTGAGCTTGTCA+AGG - tig0028560:34275-34294 None:intergenic 50.0%
CTCAAGGCTGAACGTGAAAG+AGG + tig0028560:34282-34301 Msa1438480:CDS 50.0%
ACAGTCAGCTTGGGATGTTC+CGG - tig0028560:34409-34428 None:intergenic 50.0%
GGCTTCAAAACCACCAGTAG+TGG - tig0028560:34451-34470 None:intergenic 50.0%
! AGCAAGGAGAGCATGTTCAC+GGG - tig0028560:34496-34515 None:intergenic 50.0%
GCTCTCCTTGCTTTCACTCT+TGG + tig0028560:34504-34523 Msa1438480:CDS 50.0%
TTGGACCCTTGTACCAGTCA+AGG - tig0028560:34836-34855 None:intergenic 50.0%
TTGGTCAAGGGCCTCAAGAA+GGG - tig0028560:34859-34878 None:intergenic 50.0%
TTTGGTCAAGGGCCTCAAGA+AGG - tig0028560:34860-34879 None:intergenic 50.0%
TCCTGAAGTGGTAGTCGAAG+GGG - tig0028560:34912-34931 None:intergenic 50.0%
CATCCTGAAGTGGTAGTCGA+AGG - tig0028560:34914-34933 None:intergenic 50.0%
AGGAATTGGAACTGTGCCTG+TGG + tig0028560:34947-34966 Msa1438480:CDS 50.0%
GGAATTGGAACTGTGCCTGT+GGG + tig0028560:34948-34967 Msa1438480:CDS 50.0%
GAATTGGAACTGTGCCTGTG+GGG + tig0028560:34949-34968 Msa1438480:CDS 50.0%
!!! GTTGTCACTTTTGCCCCTAC+TGG + tig0028560:35005-35024 Msa1438480:CDS 50.0%
TCCCACATTGTCACCAGGAA+GGG - tig0028560:35084-35103 None:intergenic 50.0%
ATCCCACATTGTCACCAGGA+AGG - tig0028560:35085-35104 None:intergenic 50.0%
GCTGTTAAGGATCTCAAGCG+TGG + tig0028560:35122-35141 Msa1438480:CDS 50.0%
TGGGTCATCCTTGGAGTTTG+AGG - tig0028560:35156-35175 None:intergenic 50.0%
AGTAAAGCTAGCAGCCTCCT+TGG - tig0028560:35180-35199 None:intergenic 50.0%
ATGAATCACCCTGGCCAGAT+TGG + tig0028560:35215-35234 Msa1438480:CDS 50.0%
AGCCATTTCCAATCTGGCCA+GGG - tig0028560:35226-35245 None:intergenic 50.0%
TAGCCATTTCCAATCTGGCC+AGG - tig0028560:35227-35246 None:intergenic 50.0%
GGGCATAGCCATTTCCAATC+TGG - tig0028560:35232-35251 None:intergenic 50.0%
AGGTGTGGCAGTCAAGAACA+GGG - tig0028560:35253-35272 None:intergenic 50.0%
TGACAGCAATGTGAGAGGTG+TGG - tig0028560:35268-35287 None:intergenic 50.0%
ATGCGTCAAACTGTGGCTGT+TGG + tig0028560:35461-35480 Msa1438480:CDS 50.0%
CATCAAGGCTGTGGAGAAGA+AGG + tig0028560:35487-35506 Msa1438480:CDS 50.0%
GTCACCTTAAGTCCTCCACT+GGG - tig0028560:35515-35534 None:intergenic 50.0%
GAAGAAGAAGTGAACCGAGC+AGG + tig0028560:35547-35566 Msa1438480:exon 50.0%
GTAGCATATCCGCAAGACCT+TGG + tig0028560:36030-36049 Msa1438480:three_prime_UTR 50.0%
CCTCACGCAGGATCGAACTA+CGG - tig0028560:33854-33873 None:intergenic 55.0%
CGTAGTTCGATCCTGCGTGA+GGG + tig0028560:33852-33871 Msa1438480:intron 55.0%
GAATTGAACTGCCCTCACGC+AGG - tig0028560:33866-33885 None:intergenic 55.0%
!! GTCATCGGCCATGTTGACTC+TGG + tig0028560:34129-34148 Msa1438480:CDS 55.0%
CTTGAGCTTGTCAAGGACCC+AGG - tig0028560:34268-34287 None:intergenic 55.0%
CTGGGTCCTTGACAAGCTCA+AGG + tig0028560:34266-34285 Msa1438480:CDS 55.0%
TGCACTGTCATTGATGCCCC+TGG + tig0028560:34354-34373 Msa1438480:CDS 55.0%
TCATTGATGCCCCTGGACAC+AGG + tig0028560:34361-34380 Msa1438480:CDS 55.0%
CATTGATGCCCCTGGACACA+GGG + tig0028560:34362-34381 Msa1438480:CDS 55.0%
GAGAACGGCACAGTCAGCTT+GGG - tig0028560:34418-34437 None:intergenic 55.0%
TGAGAACGGCACAGTCAGCT+TGG - tig0028560:34419-34438 None:intergenic 55.0%
AGCGCTCCACAAACCTTGAC+TGG + tig0028560:34820-34839 Msa1438480:CDS 55.0%
CAAGGGTCCAACCCTTCTTG+AGG + tig0028560:34845-34864 Msa1438480:CDS 55.0%
TCAAGGGCCTCAAGAAGGGT+TGG - tig0028560:34855-34874 None:intergenic 55.0%
GGCTTGTCTGAAGGCCTCTT+AGG - tig0028560:34891-34910 None:intergenic 55.0%
AGTCGAAGGGGCTTGTCTGA+AGG - tig0028560:34900-34919 None:intergenic 55.0%
GCCCTTCCTGGTGACAATGT+GGG + tig0028560:35080-35099 Msa1438480:CDS 55.0%
CACCCTGGCCAGATTGGAAA+TGG + tig0028560:35221-35240 Msa1438480:CDS 55.0%
GGTGTGGCAGTCAAGAACAG+GGG - tig0028560:35252-35271 None:intergenic 55.0%
GAGGTGTGGCAGTCAAGAAC+AGG - tig0028560:35254-35273 None:intergenic 55.0%
GATGATTCCCACCAAGCCCA+TGG + tig0028560:35385-35404 Msa1438480:CDS 55.0%
! TCAACCACCATGGGCTTGGT+GGG - tig0028560:35395-35414 None:intergenic 55.0%
AGTCTCAACCACCATGGGCT+TGG - tig0028560:35399-35418 None:intergenic 55.0%
CTAACAGCAAAACGGCCGAG+TGG - tig0028560:35437-35456 None:intergenic 55.0%
TGTGGCTGTTGGCGTCATCA+AGG + tig0028560:35472-35491 Msa1438480:CDS 55.0%
TGTTGGCGTCATCAAGGCTG+TGG + tig0028560:35478-35497 Msa1438480:CDS 55.0%
GTGGAGAAGAAGGATCCCAG+TGG + tig0028560:35497-35516 Msa1438480:CDS 55.0%
GAGAAGAAGGATCCCAGTGG+AGG + tig0028560:35500-35519 Msa1438480:CDS 55.0%
GGATCCCAGTGGAGGACTTA+AGG + tig0028560:35508-35527 Msa1438480:CDS 55.0%
GGTCACCTTAAGTCCTCCAC+TGG - tig0028560:35516-35535 None:intergenic 55.0%
!! ACTGGGTTCTAGATCGACGG+TGG + tig0028560:35708-35727 Msa1438480:intron 55.0%
GCGCAAAAACCCTAGCCGCA+AGG - tig0028560:32788-32807 None:intergenic 60.0%
AAGGAAAACGGGGGCCCAAC+CGG - tig0028560:33664-33683 None:intergenic 60.0%
CCGTAGTTCGATCCTGCGTG+AGG + tig0028560:33851-33870 Msa1438480:intron 60.0%
GCCCCTTCGACTACCACTTC+AGG + tig0028560:34908-34927 Msa1438480:CDS 60.0%
GCTCTAACAGAGGCCCTTCC+TGG + tig0028560:35068-35087 Msa1438480:CDS 60.0%
GGCCCTTCCTGGTGACAATG+TGG + tig0028560:35079-35098 Msa1438480:CDS 60.0%
CTCCAAGGATGACCCAGCCA+AGG + tig0028560:35160-35179 Msa1438480:CDS 60.0%
CTCCTTGGCTGGGTCATCCT+TGG - tig0028560:35165-35184 None:intergenic 60.0%
CAAGGATGACCCAGCCAAGG+AGG + tig0028560:35163-35182 Msa1438480:CDS 60.0%
AGCTAGCAGCCTCCTTGGCT+GGG - tig0028560:35175-35194 None:intergenic 60.0%
AAGCTAGCAGCCTCCTTGGC+TGG - tig0028560:35176-35195 None:intergenic 60.0%
GATTCCCACCAAGCCCATGG+TGG + tig0028560:35388-35407 Msa1438480:CDS 60.0%
CTCAACCACCATGGGCTTGG+TGG - tig0028560:35396-35415 None:intergenic 60.0%
ACAGCAAAACGGCCGAGTGG+AGG - tig0028560:35434-35453 None:intergenic 60.0%
GGGGGCCCAACCGGGTTAAA+AGG - tig0028560:33655-33674 None:intergenic 65.0%
AGGAAAACGGGGGCCCAACC+GGG - tig0028560:33663-33682 None:intergenic 65.0%
CCAGTCTCGACACGCCCCAC+AGG - tig0028560:34966-34985 None:intergenic 70.0%
CCTGTGGGGCGTGTCGAGAC+TGG + tig0028560:34963-34982 Msa1438480:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0028560 gene 32754 36334 32754 ID=Msa1438480;Name=Msa1438480
tig0028560 mRNA 32754 36334 32754 ID=Msa1438480-mRNA-1;Parent=Msa1438480;Name=Msa1438480-mRNA-1;_AED=0.10;_eAED=0.10;_QI=161|1|1|1|0.25|0|5|480|448
tig0028560 exon 32754 32823 32754 ID=Msa1438480-mRNA-1:exon:11257;Parent=Msa1438480-mRNA-1
tig0028560 exon 33789 33848 33789 ID=Msa1438480-mRNA-1:exon:11258;Parent=Msa1438480-mRNA-1
tig0028560 exon 34065 34557 34065 ID=Msa1438480-mRNA-1:exon:11259;Parent=Msa1438480-mRNA-1
tig0028560 exon 34675 35661 34675 ID=Msa1438480-mRNA-1:exon:11260;Parent=Msa1438480-mRNA-1
tig0028560 exon 35957 36334 35957 ID=Msa1438480-mRNA-1:exon:11261;Parent=Msa1438480-mRNA-1
tig0028560 five_prime_UTR 32754 32823 32754 ID=Msa1438480-mRNA-1:five_prime_utr;Parent=Msa1438480-mRNA-1
tig0028560 five_prime_UTR 33789 33848 33789 ID=Msa1438480-mRNA-1:five_prime_utr;Parent=Msa1438480-mRNA-1
tig0028560 five_prime_UTR 34065 34095 34065 ID=Msa1438480-mRNA-1:five_prime_utr;Parent=Msa1438480-mRNA-1
tig0028560 CDS 34096 34557 34096 ID=Msa1438480-mRNA-1:cds;Parent=Msa1438480-mRNA-1
tig0028560 CDS 34675 35559 34675 ID=Msa1438480-mRNA-1:cds;Parent=Msa1438480-mRNA-1
tig0028560 three_prime_UTR 35560 35661 35560 ID=Msa1438480-mRNA-1:three_prime_utr;Parent=Msa1438480-mRNA-1
tig0028560 three_prime_UTR 35957 36334 35957 ID=Msa1438480-mRNA-1:three_prime_utr;Parent=Msa1438480-mRNA-1
Gene Sequence

>Msa1438480

ATGGGTAAGGAAAAGGTTCATATCAACATTGTGGTCATCGGCCATGTTGACTCTGGGAAATCAACCACCACTGGTCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTCATTGAGAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTATGCCTGGGTCCTTGACAAGCTCAAGGCTGAACGTGAAAGAGGTATCACCATTGACATTGCTCTCTGGAAGTTTGAGACAACCAAGTACTACTGCACTGTCATTGATGCCCCTGGACACAGGGATTTCATTAAGAACATGATCACCGGAACATCCCAAGCTGACTGTGCCGTTCTCATCATTGATTCCACTACTGGTGGTTTTGAAGCCGGTATTTCTAAGGATGGTCAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAAGCAAATGATCTGCTGTTGCAACAAGATGGATGCTACTACACCCAAGTACTCCAAGGGTAGATATGATGAAATTGTGAAGGAAGTTTCATCCTATTTGAAGAAGGTTGGCTATAACCCAGACAAAATTCCATTTGTTCCCATCTCTGGTTTTGAGGGAGATAACATGATTGAGCGCTCCACAAACCTTGACTGGTACAAGGGTCCAACCCTTCTTGAGGCCCTTGACCAAATCAATGAGCCTAAGAGGCCTTCAGACAAGCCCCTTCGACTACCACTTCAGGATGTCTACAAGATTGGAGGAATTGGAACTGTGCCTGTGGGGCGTGTCGAGACTGGTGTCATAAAACCTGGAATGGTTGTCACTTTTGCCCCTACTGGACTGACAACTGAAGTCAAGTCTGTGGAGATGCATCATGAAGCTCTAACAGAGGCCCTTCCTGGTGACAATGTGGGATTTAATGTCAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGGTATGTTGCCTCAAACTCCAAGGATGACCCAGCCAAGGAGGCTGCTAGCTTTACTTCTCAAGTGATCATAATGAATCACCCTGGCCAGATTGGAAATGGCTATGCCCCTGTTCTTGACTGCCACACCTCTCACATTGCTGTCAAGTTTGCTGAGCTTGTTACTAAGATTGATAGGCGTTCTGGTAAGGAGATTGAGAAGGAGCCCAAATTCTTGAAGAATGGTGATGCTGGTATTATTAAGATGATTCCCACCAAGCCCATGGTGGTTGAGACTTTCTCTGAATATCCTCCACTCGGCCGTTTTGCTGTTAGAGACATGCGTCAAACTGTGGCTGTTGGCGTCATCAAGGCTGTGGAGAAGAAGGATCCCAGTGGAGGACTTAAGGTGACCAAGTCAGCATTGAAGAAGAAGTGA
Protein sequence

>Msa1438480

MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPSGGLKVTKSALKKK*