AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0045560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045560 MtrunA17_Chr1g0212701 99.670 908 3 0 1 908 1 908 0.0 1873
Msa0045560 MtrunA17_Chr1g0212701 33.861 632 386 11 28 634 759 1383 1.08e-88 309
Msa0045560 MtrunA17_Chr7g0222781 85.605 917 122 3 1 908 1 916 0.0 1585
Msa0045560 MtrunA17_Chr7g0222781 33.701 635 383 12 28 634 767 1391 2.11e-90 314
Msa0045560 MtrunA17_Chr7g0264631 42.375 682 362 11 41 701 54 725 2.57e-173 539
Msa0045560 MtrunA17_Chr7g0264631 33.100 571 372 5 79 639 753 1323 4.19e-97 333
Msa0045560 MtrunA17_Chr7g0264631 35.714 154 89 2 755 908 698 841 6.16e-22 102
Msa0045560 MtrunA17_Chr6g0453051 44.482 598 315 4 48 637 13 601 1.67e-170 529
Msa0045560 MtrunA17_Chr6g0453051 34.746 590 375 7 55 636 659 1246 2.64e-95 327
Msa0045560 MtrunA17_Chr6g0453051 33.663 101 64 2 809 908 671 769 2.22e-12 71.6
Msa0045560 MtrunA17_Chr1g0180601 42.291 681 362 10 36 693 19 691 3.07e-170 530
Msa0045560 MtrunA17_Chr1g0180601 32.941 595 388 6 56 640 705 1298 4.54e-90 312
Msa0045560 MtrunA17_Chr1g0180601 34.375 160 93 3 749 908 668 815 3.37e-20 97.1
Msa0045560 MtrunA17_Chr5g0410921 42.504 607 334 7 53 647 1 604 1.27e-157 495
Msa0045560 MtrunA17_Chr5g0410921 38.057 494 303 3 147 637 735 1228 1.82e-97 332
Msa0045560 MtrunA17_Chr1g0193991 38.966 716 403 8 40 742 26 720 5.20e-156 492
Msa0045560 MtrunA17_Chr1g0193991 36.125 609 349 12 58 640 693 1287 3.70e-94 323
Msa0045560 MtrunA17_Chr3g0119381 42.079 606 340 6 46 640 36 641 4.66e-152 482
Msa0045560 MtrunA17_Chr3g0119381 36.145 581 363 6 60 633 713 1292 3.42e-99 338
Msa0045560 MtrunA17_Chr1g0194031 39.871 622 360 5 40 652 22 638 1.85e-151 469
Msa0045560 MtrunA17_Chr4g0069351 37.666 677 408 7 48 710 21 697 3.25e-150 476
Msa0045560 MtrunA17_Chr4g0069351 35.406 579 364 6 63 633 695 1271 1.02e-97 333
Msa0045560 MtrunA17_Chr2g0285191 36.983 749 413 10 47 749 1 736 6.44e-150 476
Msa0045560 MtrunA17_Chr2g0285191 36.964 560 345 5 82 633 730 1289 1.79e-103 350
Msa0045560 MtrunA17_Chr2g0285311 39.074 691 392 10 66 744 30 703 7.63e-150 475
Msa0045560 MtrunA17_Chr2g0285311 36.000 600 363 10 47 633 670 1261 1.73e-104 352
Msa0045560 MtrunA17_Chr2g0285311 33.028 109 71 1 800 908 680 786 2.51e-12 71.2
Msa0045560 MtrunA17_Chr4g0069401 41.158 622 348 6 24 637 1 612 1.16e-147 469
Msa0045560 MtrunA17_Chr4g0069401 35.925 643 366 11 6 633 658 1269 1.74e-105 355
Msa0045560 MtrunA17_Chr2g0285301 40.558 609 347 6 51 644 2 610 7.58e-147 467
Msa0045560 MtrunA17_Chr2g0285301 36.409 596 362 9 49 633 668 1257 1.32e-108 363
Msa0045560 MtrunA17_Chr4g0069361 36.972 687 399 8 48 710 21 697 9.70e-143 456
Msa0045560 MtrunA17_Chr4g0069361 34.429 578 371 5 63 633 695 1271 1.64e-97 333
Msa0045560 MtrunA17_Chr4g0069411 35.758 811 451 14 51 835 31 797 2.19e-142 456
Msa0045560 MtrunA17_Chr4g0069411 33.989 559 362 4 82 633 727 1285 4.19e-86 301
Msa0045560 MtrunA17_Chr6g0481921 39.542 655 367 9 141 782 10 648 1.45e-141 451
Msa0045560 MtrunA17_Chr6g0481921 37.271 601 358 9 47 633 568 1163 6.54e-108 360
Msa0045560 MtrunA17_Chr4g0039821 38.679 636 380 5 39 664 7 642 2.26e-136 439
Msa0045560 MtrunA17_Chr4g0039821 36.565 588 356 9 56 632 687 1268 3.00e-104 352
Msa0045560 MtrunA17_Chr6g0451911 40.448 581 334 6 68 637 21 600 4.52e-135 436
Msa0045560 MtrunA17_Chr6g0451911 34.653 505 292 6 144 626 755 1243 3.45e-80 283
Msa0045560 MtrunA17_Chr6g0451911 31.000 100 68 1 809 908 677 775 8.46e-11 66.2
Msa0045560 MtrunA17_Chr1g0156821 42.468 624 344 8 40 650 5 626 1.08e-134 434
Msa0045560 MtrunA17_Chr1g0156821 34.039 567 366 5 79 637 667 1233 8.88e-99 336
Msa0045560 MtrunA17_Chr1g0156821 35.294 102 65 1 807 908 655 755 6.12e-14 76.6
Msa0045560 MtrunA17_Chr3g0138211 37.482 683 391 7 37 704 27 688 5.15e-132 428
Msa0045560 MtrunA17_Chr3g0138211 32.730 608 381 7 53 633 667 1273 3.48e-84 295
Msa0045560 MtrunA17_Chr6g0452111 40.275 581 335 6 71 640 31 610 1.63e-131 426
Msa0045560 MtrunA17_Chr6g0452111 32.612 601 385 8 50 637 667 1260 3.81e-88 306
Msa0045560 MtrunA17_Chr6g0452111 26.168 214 120 6 710 908 589 779 1.13e-15 82.0
Msa0045560 MtrunA17_Chr8g0344651 37.855 634 376 7 62 686 252 876 1.64e-130 427
Msa0045560 MtrunA17_Chr8g0344651 34.942 518 319 7 127 636 974 1481 9.20e-79 280
Msa0045560 MtrunA17_Chr6g0452041 39.587 581 339 6 68 637 21 600 5.86e-129 419
Msa0045560 MtrunA17_Chr6g0452041 32.667 600 378 9 54 637 672 1261 1.59e-83 293
Msa0045560 MtrunA17_Chr6g0452041 23.404 235 145 5 699 908 556 780 3.39e-16 84.0
Msa0045560 MtrunA17_Chr6g0452141 39.430 596 339 9 68 647 22 611 1.13e-126 413
Msa0045560 MtrunA17_Chr6g0452141 33.795 577 370 8 68 633 680 1255 8.20e-87 303
Msa0045560 MtrunA17_Chr6g0452141 35.644 101 64 1 808 908 679 778 6.11e-15 79.7
Msa0045560 MtrunA17_Chr4g0041871 38.125 640 371 10 71 695 6 635 1.39e-125 410
Msa0045560 MtrunA17_Chr4g0041871 33.217 572 370 7 79 639 678 1248 3.40e-90 312
Msa0045560 MtrunA17_Chr4g0041871 31.928 166 101 5 743 901 599 759 3.99e-16 83.6
Msa0045560 MtrunA17_Chr6g0451881 39.929 566 329 5 68 623 21 585 1.58e-124 407
Msa0045560 MtrunA17_Chr6g0451881 33.457 538 349 6 105 633 708 1245 8.15e-81 285
Msa0045560 MtrunA17_Chr6g0451881 30.392 102 70 1 807 908 667 767 4.54e-12 70.5
Msa0045560 MtrunA17_Chr6g0452171 39.243 581 341 6 68 637 21 600 1.56e-122 402
Msa0045560 MtrunA17_Chr6g0452171 33.107 589 383 6 56 633 670 1258 7.46e-89 308
Msa0045560 MtrunA17_Chr6g0452171 35.965 114 71 2 795 908 670 781 9.79e-17 85.5
Msa0045560 MtrunA17_Chr7g0233901 38.554 581 345 7 71 640 20 599 6.97e-120 394
Msa0045560 MtrunA17_Chr7g0233901 32.484 628 401 8 19 633 617 1234 5.09e-94 323
Msa0045560 MtrunA17_Chr7g0233901 26.887 212 142 6 699 906 552 754 5.79e-19 92.8
Msa0045560 MtrunA17_Chr8g0366451 43.237 414 230 3 122 531 35 447 3.77e-111 349
Msa0045560 MtrunA17_Chr3g0123411 40.000 535 288 7 156 680 1 512 2.45e-106 355
Msa0045560 MtrunA17_Chr3g0123411 31.171 632 415 9 19 638 523 1146 1.34e-87 303
Msa0045560 MtrunA17_Chr3g0123411 27.273 176 110 4 747 908 494 665 1.18e-17 88.6
Msa0045560 MtrunA17_Chr6g0486841 35.703 619 384 7 75 680 25 642 1.25e-104 352
Msa0045560 MtrunA17_Chr6g0486841 31.284 553 371 4 79 622 673 1225 3.84e-80 283
Msa0045560 MtrunA17_Chr8g0366481 36.426 582 364 6 63 639 47 627 1.57e-96 317
Msa0045560 MtrunA17_Chr3g0128391 39.948 383 228 2 150 530 5 387 1.45e-90 298
Msa0045560 MtrunA17_Chr3g0128391 50.000 114 57 0 530 643 446 559 1.23e-25 112
Msa0045560 MtrunA17_Chr6g0452051 38.200 411 249 4 125 531 5 414 2.28e-90 293
Msa0045560 MtrunA17_Chr6g0452061 34.622 569 348 9 79 633 209 767 1.06e-89 302
Msa0045560 MtrunA17_Chr6g0452061 37.349 166 98 2 530 689 13 178 3.27e-23 106
Msa0045560 MtrunA17_Chr6g0452061 34.314 102 66 1 807 908 197 297 3.34e-14 77.0
Msa0045560 MtrunA17_Chr1g0194001 41.823 373 213 2 257 625 2 374 1.28e-88 287
Msa0045560 MtrunA17_Chr4g0061601 33.061 611 387 10 38 632 17 621 4.71e-88 294
Msa0045560 MtrunA17_Chr6g0452071 37.753 445 265 6 200 633 8 451 1.78e-84 279
Msa0045560 MtrunA17_Chr3g0128381 32.024 509 321 8 147 636 134 636 6.02e-75 258
Msa0045560 MtrunA17_Chr6g0452081 52.814 231 102 3 376 603 1 227 1.23e-67 225
Msa0045560 MtrunA17_Chr5g0412741 34.592 503 279 10 164 639 220 699 2.13e-66 236
Msa0045560 MtrunA17_Chr6g0474071 47.699 239 120 3 398 632 211 448 5.21e-62 217
Msa0045560 MtrunA17_Chr7g0227391 28.990 614 365 16 55 632 82 660 8.47e-60 216
Msa0045560 MtrunA17_Chr5g0433051 39.925 268 157 3 367 632 432 697 2.53e-50 189
Msa0045560 MtrunA17_Chr5g0433071 36.842 323 194 5 316 632 381 699 1.10e-45 176
Msa0045560 MtrunA17_Chr1g0178481 30.203 394 246 8 259 626 225 615 4.23e-40 157
Msa0045560 MtrunA17_Chr8g0366471 54.717 106 47 1 530 634 18 123 1.72e-30 117
Msa0045560 MtrunA17_Chr6g0452091 30.806 211 144 2 144 353 32 241 5.11e-29 116
Msa0045560 MtrunA17_Chr2g0295901 24.587 484 340 12 164 634 1020 1491 4.68e-27 119
Msa0045560 MtrunA17_Chr2g0295901 25.641 273 185 4 368 639 613 868 2.48e-17 87.8
Msa0045560 MtrunA17_Chr8g0376961 29.134 254 172 3 397 644 1195 1446 7.54e-27 118
Msa0045560 MtrunA17_Chr8g0376961 27.982 218 140 5 409 624 598 800 2.37e-12 71.2
Msa0045560 MtrunA17_Chr2g0295911 25.311 482 339 13 164 634 1023 1494 1.23e-26 117
Msa0045560 MtrunA17_Chr2g0295911 23.810 273 190 4 368 639 613 868 6.55e-17 86.3
Msa0045560 MtrunA17_Chr2g0295921 29.289 239 166 2 397 634 1270 1506 3.40e-25 113
Msa0045560 MtrunA17_Chr2g0295921 25.311 241 166 3 400 639 653 880 2.73e-17 87.4
Msa0045560 MtrunA17_Chr2g0333911 29.386 228 156 4 397 623 771 994 8.10e-25 111
Msa0045560 MtrunA17_Chr2g0333911 25.000 228 154 4 417 642 177 389 1.03e-13 75.9
Msa0045560 MtrunA17_Chr8g0363771 23.695 498 333 14 161 634 1017 1491 1.73e-24 110
Msa0045560 MtrunA17_Chr8g0363771 25.614 285 194 4 400 679 636 907 4.73e-18 90.1
Msa0045560 MtrunA17_Chr2g0285731 30.303 330 198 7 328 627 1136 1463 2.31e-24 110
Msa0045560 MtrunA17_Chr2g0285731 27.698 278 170 5 400 674 615 864 4.31e-21 100
Msa0045560 MtrunA17_Chr3g0085281 28.509 228 160 2 397 623 1218 1443 2.38e-24 110
Msa0045560 MtrunA17_Chr3g0085281 26.613 248 153 8 431 675 623 844 8.98e-11 66.2
Msa0045560 MtrunA17_Chr8g0341851 28.947 228 159 2 397 623 1217 1442 3.59e-24 109
Msa0045560 MtrunA17_Chr8g0341851 26.891 238 156 3 400 634 606 828 1.48e-14 78.6
Msa0045560 MtrunA17_Chr3g0080941 31.579 228 153 2 397 623 1232 1457 1.61e-23 107
Msa0045560 MtrunA17_Chr3g0080941 24.923 325 219 8 327 645 543 848 9.16e-18 89.0
Msa0045560 MtrunA17_Chr8g0341761 28.571 238 167 2 397 633 1202 1437 4.99e-23 106
Msa0045560 MtrunA17_Chr8g0341761 23.237 241 171 2 400 639 596 823 4.98e-14 77.0
Msa0045560 MtrunA17_Chr3g0080981 31.579 228 153 2 397 623 1231 1456 1.06e-22 105
Msa0045560 MtrunA17_Chr3g0080981 26.549 339 204 13 327 649 543 852 2.44e-18 90.9
Msa0045560 MtrunA17_Chr8g0341751 28.571 238 167 2 397 633 1041 1276 1.57e-22 104
Msa0045560 MtrunA17_Chr8g0341751 22.963 270 181 6 416 671 440 696 5.66e-12 70.1
Msa0045560 MtrunA17_Chr6g0463151 23.901 523 358 15 119 621 761 1263 1.93e-22 104
Msa0045560 MtrunA17_Chr6g0463151 21.569 306 223 4 395 697 433 724 3.09e-14 77.4
Msa0045560 MtrunA17_Chr8g0353781 28.571 238 167 2 397 633 1208 1443 2.23e-22 103
Msa0045560 MtrunA17_Chr8g0353781 24.444 225 156 2 416 639 615 826 6.07e-14 76.6
Msa0045560 MtrunA17_Chr6g0463121 23.420 538 342 16 123 625 947 1449 3.14e-22 103
Msa0045560 MtrunA17_Chr6g0463121 24.000 300 194 5 396 694 616 882 2.23e-13 74.7
Msa0045560 MtrunA17_Chr5g0445741 27.542 236 166 3 389 623 1242 1473 3.59e-22 103
Msa0045560 MtrunA17_Chr5g0445741 27.572 243 160 5 393 633 623 851 3.86e-14 77.4
Msa0045560 MtrunA17_Chr5g0412941 26.432 227 164 2 398 623 83 307 3.92e-22 98.6
Msa0045560 MtrunA17_Chr8g0353541 28.151 238 168 2 397 633 825 1060 4.04e-22 103
Msa0045560 MtrunA17_Chr8g0353541 24.000 225 157 2 416 639 224 435 2.14e-13 74.7
Msa0045560 MtrunA17_Chr6g0463391 23.855 524 356 16 123 625 133 634 4.08e-22 102
Msa0045560 MtrunA17_Chr6g0472531 22.306 529 351 15 123 621 898 1396 4.14e-22 103
Msa0045560 MtrunA17_Chr6g0472531 20.656 305 227 4 395 697 566 857 1.91e-12 71.6
Msa0045560 MtrunA17_Chr5g0412721 26.872 227 163 2 398 623 1244 1468 8.34e-22 102
Msa0045560 MtrunA17_Chr5g0412721 25.180 278 190 5 393 666 612 875 1.18e-14 79.0
Msa0045560 MtrunA17_Chr8g0337121 26.872 227 163 2 398 623 1257 1481 9.62e-22 102
Msa0045560 MtrunA17_Chr8g0337121 27.099 262 170 6 367 623 593 838 9.62e-17 85.9
Msa0045560 MtrunA17_Chr8g0337191 26.872 227 163 2 398 623 1237 1461 9.90e-22 102
Msa0045560 MtrunA17_Chr8g0337191 27.099 262 170 6 367 623 573 818 9.58e-17 85.9
Msa0045560 MtrunA17_Chr7g0262191 27.046 281 194 5 352 623 1228 1506 1.15e-21 101
Msa0045560 MtrunA17_Chr7g0262191 24.540 326 213 9 330 642 568 873 5.52e-12 70.1
Msa0045560 MtrunA17_Chr5g0445701 29.381 194 136 1 413 605 7 200 1.18e-21 95.5
Msa0045560 MtrunA17_Chr5g0445671 27.313 227 162 2 398 623 858 1082 2.00e-21 100
Msa0045560 MtrunA17_Chr5g0445671 27.572 243 160 5 393 633 232 460 4.51e-14 77.0
Msa0045560 MtrunA17_Chr6g0463131 21.989 523 351 13 123 615 948 1443 3.09e-21 100
Msa0045560 MtrunA17_Chr6g0463131 22.876 306 219 6 395 697 616 907 2.88e-15 80.9
Msa0045560 MtrunA17_Chr3g0101471 22.878 542 368 16 122 634 778 1298 3.53e-21 100
Msa0045560 MtrunA17_Chr3g0101471 28.947 228 144 6 431 654 461 674 2.22e-15 81.3
Msa0045560 MtrunA17_Chr1g0195691 28.870 239 167 2 397 634 1270 1506 3.60e-21 100
Msa0045560 MtrunA17_Chr1g0195691 23.507 268 182 4 418 675 668 922 1.00e-15 82.4
Msa0045560 MtrunA17_Chr1g0183191 27.948 229 162 2 396 623 1280 1506 4.01e-21 100
Msa0045560 MtrunA17_Chr1g0183191 25.725 276 177 5 400 671 643 894 1.90e-13 75.1
Msa0045560 MtrunA17_Chr8g0341811 27.311 238 170 2 397 633 1029 1264 4.47e-21 99.8
Msa0045560 MtrunA17_Chr8g0341811 25.339 221 151 3 418 637 455 662 4.52e-14 77.0
Msa0045560 MtrunA17_Chr6g0463181 26.872 227 160 3 396 621 1208 1429 4.70e-21 99.8
Msa0045560 MtrunA17_Chr6g0463181 21.711 304 222 5 395 697 602 890 7.50e-15 79.7
Msa0045560 MtrunA17_Chr6g0463141 27.706 231 161 3 396 625 1249 1474 5.05e-21 99.8
Msa0045560 MtrunA17_Chr6g0471281 23.986 567 369 17 123 666 948 1475 6.15e-21 99.4
Msa0045560 MtrunA17_Chr6g0471281 21.799 289 204 4 394 681 615 882 5.87e-13 73.6
Msa0045560 MtrunA17_Chr1g0202221 25.820 244 171 4 396 634 1131 1369 6.30e-21 99.4
Msa0045560 MtrunA17_Chr1g0202221 23.137 255 177 7 395 645 613 852 4.89e-11 67.0
Msa0045560 MtrunA17_Chr3g0101441 26.337 243 171 3 398 634 1060 1300 1.06e-20 98.6
Msa0045560 MtrunA17_Chr3g0101441 27.519 258 171 5 400 654 432 676 3.32e-14 77.4
Msa0045560 MtrunA17_Chr3g0101461 25.753 299 202 5 352 634 1006 1300 1.15e-20 98.6
Msa0045560 MtrunA17_Chr3g0101461 28.352 261 171 5 400 657 432 679 1.67e-15 81.6
Msa0045560 MtrunA17_Chr6g0463201 22.938 497 346 13 146 625 978 1454 1.16e-20 98.6
Msa0045560 MtrunA17_Chr6g0463201 22.531 324 222 6 367 675 590 899 5.16e-12 70.5
Msa0045560 MtrunA17_Chr2g0285231 50.602 83 41 0 545 627 22 104 1.86e-20 87.4
Msa0045560 MtrunA17_Chr8g0341801 27.311 238 170 2 397 633 184 419 3.01e-20 94.7
Msa0045560 MtrunA17_Chr8g0359291 25.991 227 162 3 396 621 406 627 3.11e-20 96.3
Msa0045560 MtrunA17_Chr3g0101481 25.551 227 166 2 398 623 1253 1477 1.32e-19 95.1
Msa0045560 MtrunA17_Chr3g0101481 28.390 236 153 5 400 633 624 845 2.62e-14 77.8
Msa0045560 MtrunA17_Chr8g0393151 27.755 245 165 6 383 622 2 239 6.80e-19 87.4
Msa0045560 MtrunA17_Chr6g0484351 28.629 248 174 2 387 633 399 644 7.90e-19 91.7
Msa0045560 MtrunA17_Chr6g0463211 25.926 243 167 6 398 634 1298 1533 2.82e-17 87.4
Msa0045560 MtrunA17_Chr6g0463211 22.615 283 191 8 396 666 654 920 1.86e-11 68.6
Msa0045560 MtrunA17_Chr2g0300791 33.333 99 63 2 809 906 14 110 4.54e-13 68.2
Msa0045560 MtrunA17_Chr5g0412921 25.325 308 197 7 378 666 573 866 7.80e-13 72.8
Msa0045560 MtrunA17_Chr7g0249091 28.862 246 142 10 400 620 86 323 1.46e-11 67.0
Msa0045560 MtrunA17_Chr8g0341791 24.540 163 122 1 478 639 16 178 1.77e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045560 AT3G55320.1 81.453 922 155 4 1 908 1 920 0.0 1539
Msa0045560 AT3G55320.1 35.614 570 347 6 79 634 832 1395 2.51e-90 314
Msa0045560 AT2G39480.1 82.283 920 150 4 1 908 1 919 0.0 1529
Msa0045560 AT2G39480.1 34.483 609 369 9 40 634 802 1394 4.52e-89 311
Msa0045560 AT2G39480.2 84.324 740 115 1 169 908 1 739 0.0 1283
Msa0045560 AT2G39480.2 34.483 609 369 9 40 634 622 1214 1.48e-89 310
Msa0045560 AT2G36910.1 43.472 651 340 8 59 693 16 654 1.90e-167 523
Msa0045560 AT2G36910.1 32.574 571 375 6 79 639 696 1266 2.89e-88 307
Msa0045560 AT2G36910.1 34.416 154 89 4 764 908 634 784 1.49e-20 98.6
Msa0045560 AT3G28860.1 43.980 598 318 5 48 637 15 603 8.79e-165 514
Msa0045560 AT3G28860.1 34.526 559 357 6 85 636 692 1248 6.30e-92 317
Msa0045560 AT3G28860.1 33.333 114 74 2 796 908 659 771 4.05e-13 74.3
Msa0045560 AT1G10680.2 41.692 650 351 8 60 691 18 657 1.33e-162 507
Msa0045560 AT1G10680.2 33.714 525 333 8 64 579 644 1162 3.25e-82 289
Msa0045560 AT1G10680.2 28.395 162 104 3 757 908 586 745 9.54e-13 73.2
Msa0045560 AT1G10680.1 41.692 650 351 8 60 691 18 657 1.78e-162 508
Msa0045560 AT1G10680.1 34.418 584 367 9 64 637 644 1221 6.48e-100 339
Msa0045560 AT1G10680.1 28.395 162 104 3 757 908 586 745 7.68e-13 73.6
Msa0045560 AT4G25960.1 40.971 659 364 9 54 691 51 705 1.03e-161 507
Msa0045560 AT4G25960.1 33.278 604 372 8 55 637 676 1269 9.77e-97 331
Msa0045560 AT4G25960.1 30.409 171 97 5 757 908 626 793 3.16e-13 74.7
Msa0045560 AT1G27940.1 43.396 583 318 5 65 637 29 609 4.71e-155 489
Msa0045560 AT1G27940.1 35.702 577 343 9 79 637 677 1243 2.10e-100 341
Msa0045560 AT1G27940.1 40.404 99 58 1 810 908 668 765 8.88e-15 79.7
Msa0045560 AT1G28010.1 41.408 611 328 6 56 637 1 610 3.67e-150 476
Msa0045560 AT1G28010.1 34.912 570 359 8 79 638 679 1246 1.10e-95 328
Msa0045560 AT1G28010.1 40.404 99 58 1 810 908 670 767 1.82e-14 78.6
Msa0045560 AT5G46540.1 39.703 607 359 4 66 665 18 624 1.02e-147 469
Msa0045560 AT5G46540.1 35.602 573 359 6 70 633 670 1241 2.74e-94 324
Msa0045560 AT3G62150.3 42.539 583 327 5 66 640 63 645 9.67e-147 468
Msa0045560 AT3G62150.3 36.879 564 342 7 82 634 729 1289 8.72e-103 348
Msa0045560 AT3G62150.2 42.539 583 327 5 66 640 63 645 9.67e-147 468
Msa0045560 AT3G62150.2 36.879 564 342 7 82 634 729 1289 8.72e-103 348
Msa0045560 AT3G62150.1 42.539 583 327 5 66 640 63 645 9.67e-147 468
Msa0045560 AT3G62150.1 36.879 564 342 7 82 634 729 1289 8.72e-103 348
Msa0045560 AT2G47000.3 41.480 581 334 4 66 640 46 626 3.40e-146 459
Msa0045560 AT2G47000.3 26.102 295 202 5 51 335 687 975 1.56e-23 107
Msa0045560 AT2G47000.7 41.480 581 334 4 66 640 46 626 3.40e-146 459
Msa0045560 AT2G47000.7 26.102 295 202 5 51 335 687 975 1.56e-23 107
Msa0045560 AT4G01830.1 40.604 596 346 4 58 645 5 600 6.84e-146 464
Msa0045560 AT4G01830.1 36.082 582 354 8 66 634 647 1223 1.90e-103 349
Msa0045560 AT4G18050.1 42.268 582 329 4 66 640 16 597 1.87e-145 463
Msa0045560 AT4G18050.1 37.394 591 346 8 52 633 654 1229 2.58e-99 338
Msa0045560 AT2G47000.4 41.480 581 334 4 66 640 46 626 3.08e-145 459
Msa0045560 AT2G47000.4 25.765 392 271 7 51 429 687 1071 3.49e-33 139
Msa0045560 AT4G18050.2 42.268 582 329 4 66 640 26 607 4.19e-145 462
Msa0045560 AT4G18050.2 37.331 592 347 8 51 633 663 1239 4.96e-99 337
Msa0045560 AT2G47000.2 41.480 581 334 4 66 640 46 626 8.51e-145 460
Msa0045560 AT2G47000.2 31.633 490 313 8 51 525 687 1169 1.49e-68 249
Msa0045560 AT2G47000.6 41.480 581 334 4 66 640 46 626 8.39e-144 460
Msa0045560 AT2G47000.6 35.333 600 365 9 51 634 687 1279 9.91e-108 362
Msa0045560 AT2G47000.5 41.480 581 334 4 66 640 46 626 8.39e-144 460
Msa0045560 AT2G47000.5 35.333 600 365 9 51 634 687 1279 9.91e-108 362
Msa0045560 AT2G47000.1 41.480 581 334 4 66 640 46 626 8.39e-144 460
Msa0045560 AT2G47000.1 35.333 600 365 9 51 634 687 1279 9.91e-108 362
Msa0045560 AT4G01820.2 41.736 599 341 5 59 649 1 599 1.39e-142 448
Msa0045560 AT4G01820.2 25.670 261 187 3 82 337 661 919 1.32e-18 92.0
Msa0045560 AT1G02530.2 40.164 610 353 5 66 663 28 637 4.06e-141 445
Msa0045560 AT1G02530.2 25.000 308 213 8 35 335 664 960 6.83e-18 89.7
Msa0045560 AT4G01820.1 41.736 599 341 5 59 649 1 599 4.30e-140 449
Msa0045560 AT4G01820.1 34.655 580 365 7 66 634 646 1222 5.47e-96 328
Msa0045560 AT1G02530.1 40.164 610 353 5 66 663 28 637 1.40e-138 446
Msa0045560 AT1G02530.1 35.016 614 374 11 35 634 664 1266 4.33e-105 354
Msa0045560 AT1G02520.1 41.681 583 332 4 66 640 41 623 5.78e-138 444
Msa0045560 AT1G02520.1 35.505 614 371 9 35 634 669 1271 2.03e-109 367
Msa0045560 AT1G02520.2 41.681 583 332 4 66 640 41 623 5.78e-138 444
Msa0045560 AT1G02520.2 35.505 614 371 9 35 634 669 1271 2.03e-109 367
Msa0045560 AT1G02520.3 41.681 583 332 4 66 640 41 623 5.78e-138 444
Msa0045560 AT1G02520.3 35.505 614 371 9 35 634 669 1271 2.03e-109 367
Msa0045560 AT3G28380.1 38.079 604 355 9 47 637 1 598 2.75e-127 414
Msa0045560 AT3G28380.1 33.618 586 373 7 60 632 650 1232 1.77e-87 305
Msa0045560 AT3G28380.1 24.299 214 147 5 699 908 554 756 2.62e-11 68.6
Msa0045560 AT3G28390.1 36.883 648 376 13 71 691 11 652 5.01e-127 414
Msa0045560 AT3G28390.1 33.390 584 368 9 66 633 640 1218 1.99e-85 298
Msa0045560 AT3G28390.1 25.592 211 145 6 699 908 542 741 1.52e-12 72.4
Msa0045560 AT3G28345.1 36.567 670 397 10 47 691 1 667 5.58e-127 414
Msa0045560 AT3G28345.1 31.654 635 416 8 18 639 610 1239 1.36e-85 299
Msa0045560 AT3G28345.1 26.168 214 143 6 699 908 554 756 3.41e-13 74.7
Msa0045560 AT3G28415.2 37.306 579 346 8 71 636 10 584 2.37e-124 406
Msa0045560 AT3G28415.2 33.390 590 377 7 61 637 640 1226 1.51e-88 307
Msa0045560 AT3G28360.1 37.866 581 341 8 71 637 10 584 1.12e-120 396
Msa0045560 AT3G28360.1 31.419 592 394 6 60 640 636 1226 4.82e-83 291
Msa0045560 AT3G28415.1 36.788 579 341 10 71 636 10 576 1.31e-118 390
Msa0045560 AT3G28415.1 33.390 590 377 7 61 637 632 1218 1.51e-88 307
Msa0045560 AT1G27940.2 47.103 397 203 4 246 637 1 395 2.74e-107 356
Msa0045560 AT1G27940.2 35.702 577 343 9 79 637 463 1029 1.98e-102 343
Msa0045560 AT1G27940.2 40.404 99 58 1 810 908 454 551 5.05e-15 80.5
Msa0045560 AT4G01830.2 36.082 582 354 8 66 634 413 989 1.55e-105 350
Msa0045560 AT4G01830.2 43.681 364 201 3 286 645 3 366 5.25e-89 305
Msa0045560 AT5G39040.1 33.278 604 376 11 49 634 38 632 1.54e-88 296
Msa0045560 AT1G70610.2 33.673 490 307 8 156 634 30 512 5.77e-67 233
Msa0045560 AT1G70610.1 31.333 600 364 14 60 634 117 693 6.77e-67 238
Msa0045560 AT5G58270.1 33.803 426 243 11 226 632 305 710 1.28e-53 200
Msa0045560 AT4G25450.3 44.583 240 128 3 398 633 299 537 4.02e-52 192
Msa0045560 AT4G25450.1 44.583 240 128 3 398 633 468 706 3.47e-51 192
Msa0045560 AT4G28620.1 31.871 433 264 9 213 632 256 670 3.72e-50 189
Msa0045560 AT4G28630.1 40.288 278 159 4 367 639 400 675 4.56e-49 186
Msa0045560 AT5G39040.2 28.274 481 318 10 49 511 38 509 2.57e-43 166
Msa0045560 AT5G03910.1 38.489 278 158 5 362 628 357 632 5.00e-40 158
Msa0045560 AT2G07680.6 32.468 231 148 3 396 623 1087 1312 1.13e-25 115
Msa0045560 AT2G07680.6 28.218 202 130 3 423 622 507 695 6.75e-12 70.5
Msa0045560 AT2G07680.4 32.468 231 148 3 396 623 1161 1386 1.20e-25 115
Msa0045560 AT2G07680.4 28.218 202 130 3 423 622 581 769 6.79e-12 70.5
Msa0045560 AT2G07680.1 32.468 231 148 3 396 623 1164 1389 1.26e-25 115
Msa0045560 AT2G07680.1 28.218 202 130 3 423 622 584 772 7.21e-12 70.5
Msa0045560 AT2G07680.3 32.468 231 148 3 396 623 1186 1411 1.35e-25 115
Msa0045560 AT2G07680.3 28.218 202 130 3 423 622 606 794 7.06e-12 70.5
Msa0045560 AT2G07680.5 32.468 231 148 3 396 623 1170 1395 1.57e-25 114
Msa0045560 AT2G07680.5 28.218 202 130 3 423 622 590 778 8.06e-12 70.1
Msa0045560 AT4G25450.2 42.667 150 81 3 398 543 468 616 9.26e-25 110
Msa0045560 AT1G04120.1 29.075 227 158 2 398 623 1266 1490 7.45e-23 106
Msa0045560 AT1G04120.1 26.613 248 164 3 400 642 622 856 4.55e-14 77.4
Msa0045560 AT1G04120.3 29.075 227 158 2 398 623 1231 1455 8.45e-23 105
Msa0045560 AT1G04120.3 26.613 248 164 3 400 642 587 821 4.96e-14 77.4
Msa0045560 AT1G30420.1 29.091 330 196 7 328 624 1134 1458 1.09e-22 105
Msa0045560 AT1G30420.1 29.388 245 154 8 400 641 615 843 7.61e-17 86.7
Msa0045560 AT1G30400.2 28.374 289 181 5 397 673 611 885 2.30e-22 104
Msa0045560 AT1G30400.2 28.529 333 200 7 327 626 1135 1462 1.69e-21 101
Msa0045560 AT1G30400.1 28.374 289 181 5 397 673 611 885 2.30e-22 104
Msa0045560 AT1G30400.1 28.529 333 200 7 327 626 1135 1462 1.69e-21 101
Msa0045560 AT3G60160.1 28.033 239 166 3 389 623 1241 1477 2.69e-22 104
Msa0045560 AT3G60160.1 27.027 259 174 3 367 623 596 841 1.89e-12 72.4
Msa0045560 AT3G60160.3 28.033 239 166 3 389 623 1205 1441 3.13e-22 103
Msa0045560 AT3G60160.3 27.027 259 174 3 367 623 560 805 2.30e-12 72.0
Msa0045560 AT3G13090.1 28.509 228 160 2 397 623 1216 1441 3.47e-22 103
Msa0045560 AT2G34660.1 31.276 243 152 4 400 641 614 842 7.64e-22 102
Msa0045560 AT2G34660.1 28.743 334 198 9 328 627 1141 1468 3.45e-21 100
Msa0045560 AT2G34660.2 31.276 243 152 4 400 641 614 842 7.64e-22 102
Msa0045560 AT2G34660.2 28.743 334 198 9 328 627 1141 1468 3.45e-21 100
Msa0045560 AT2G34660.3 31.276 243 152 4 400 641 327 555 9.90e-22 102
Msa0045560 AT2G34660.3 28.743 334 198 9 328 627 854 1181 4.52e-21 100
Msa0045560 AT3G21250.1 28.151 238 168 2 397 633 1201 1436 1.04e-21 102
Msa0045560 AT3G21250.1 26.027 292 164 10 367 642 564 819 5.47e-14 77.4
Msa0045560 AT3G21250.5 28.151 238 168 2 397 633 1207 1442 1.07e-21 102
Msa0045560 AT3G21250.5 26.027 292 164 10 367 642 570 825 5.81e-14 77.0
Msa0045560 AT3G21250.4 28.151 238 168 2 397 633 1218 1453 1.17e-21 102
Msa0045560 AT3G21250.4 26.712 292 173 9 367 642 570 836 1.52e-17 89.0
Msa0045560 AT3G21250.2 28.151 238 168 2 397 633 1212 1447 1.19e-21 102
Msa0045560 AT3G21250.2 26.712 292 173 9 367 642 564 830 1.78e-17 88.6
Msa0045560 AT3G21250.6 28.151 238 168 2 397 633 796 1031 1.34e-21 101
Msa0045560 AT3G21250.6 26.712 292 173 9 367 642 148 414 2.22e-17 88.2
Msa0045560 AT3G21250.3 28.151 238 168 2 397 633 796 1031 1.34e-21 101
Msa0045560 AT3G21250.3 26.712 292 173 9 367 642 148 414 2.22e-17 88.2
Msa0045560 AT3G13100.2 28.509 228 160 2 397 623 993 1218 2.08e-21 101
Msa0045560 AT3G13100.1 28.509 228 160 2 397 623 1238 1463 2.72e-21 100
Msa0045560 AT3G13080.1 28.070 228 161 2 397 623 1266 1491 3.06e-21 100
Msa0045560 AT3G60970.1 27.753 227 161 2 398 623 800 1024 3.45e-21 100
Msa0045560 AT3G60970.1 25.490 306 209 4 367 670 180 468 3.51e-17 87.4
Msa0045560 AT1G67940.1 30.332 211 135 6 417 622 44 247 4.24e-21 94.7
Msa0045560 AT1G30410.1 28.399 331 199 7 327 624 1136 1461 4.67e-21 100
Msa0045560 AT1G30410.1 29.918 244 154 7 400 641 618 846 6.01e-17 87.0
Msa0045560 AT1G30410.2 28.485 330 198 7 328 624 1134 1458 4.82e-21 100
Msa0045560 AT1G30410.2 29.918 244 154 7 400 641 615 843 6.42e-17 86.7
Msa0045560 AT1G30410.6 28.485 330 198 7 328 624 1134 1458 4.82e-21 100
Msa0045560 AT1G30410.6 29.918 244 154 7 400 641 615 843 6.42e-17 86.7
Msa0045560 AT1G30410.4 28.485 330 198 7 328 624 1134 1458 4.82e-21 100
Msa0045560 AT1G30410.4 29.918 244 154 7 400 641 615 843 6.42e-17 86.7
Msa0045560 AT1G30410.5 28.485 330 198 7 328 624 1019 1343 7.33e-21 99.8
Msa0045560 AT1G30410.5 29.918 244 154 7 400 641 500 728 8.14e-17 86.3
Msa0045560 AT1G04120.2 28.634 227 154 3 398 623 1266 1485 8.21e-21 99.4
Msa0045560 AT1G04120.2 26.613 248 164 3 400 642 622 856 4.07e-14 77.8
Msa0045560 AT3G13080.5 27.778 216 153 2 397 611 1266 1479 1.38e-20 98.6
Msa0045560 AT3G62700.1 25.070 359 235 7 351 704 599 928 3.86e-20 97.4
Msa0045560 AT3G62700.1 28.033 239 169 2 397 634 1294 1530 9.20e-20 95.9
Msa0045560 AT2G47800.1 22.612 513 344 13 149 634 1021 1507 3.92e-19 94.0
Msa0045560 AT2G47800.1 25.806 279 177 5 368 639 613 868 2.38e-18 91.3
Msa0045560 AT3G59140.1 25.000 244 173 4 396 634 1203 1441 1.34e-18 92.4
Msa0045560 AT3G59140.1 23.762 303 214 5 397 697 598 885 1.62e-13 75.9
Msa0045560 AT1G30410.3 29.918 244 154 7 400 641 615 843 6.17e-17 86.7
Msa0045560 AT1G30420.2 29.388 245 154 8 400 641 615 843 6.36e-17 86.7
Msa0045560 AT3G13080.2 25.877 228 141 3 397 623 1266 1466 4.23e-14 77.4
Msa0045560 AT3G60160.2 27.027 259 174 3 367 623 596 841 1.44e-12 72.4
Msa0045560 AT2G07680.2 28.218 202 130 3 423 622 606 794 6.15e-12 70.5
Msa0045560 AT1G65410.1 30.000 250 134 13 400 620 85 322 3.28e-11 66.2

Find 251 sgRNAs with CRISPR-Local

Find 477 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAAGAATCTTTCTCAATT+TGG 0.089864 1_1:+77491769 None:intergenic
CCCCTTCTTGCTTATGTTAT+CGG 0.167179 1_1:-77491225 Msa0045560:CDS
GCATTTCTACTTTGGTATAA+TGG 0.201298 1_1:-77491082 Msa0045560:CDS
ATGAGTTTCTTTGATACTTA+TGG 0.202724 1_1:-77494825 Msa0045560:CDS
CCTGGGTGACCAGTCCTATT+TGG 0.203140 1_1:+77492691 None:intergenic
GAATTCAAATTTAATATATC+AGG 0.205586 1_1:+77490980 None:intergenic
CCTCCTGCAGCAACAATAAA+TGG 0.242237 1_1:+77494538 None:intergenic
CATTTCTACTTTGGTATAAT+GGG 0.244149 1_1:-77491081 Msa0045560:CDS
TGGGAATTATATTCATAATA+TGG 0.259981 1_1:-77494635 Msa0045560:CDS
ATCGAGGTCAACCCTCATTT+TGG 0.267994 1_1:-77491329 Msa0045560:CDS
CCACTTAAGATAGGGATTTC+AGG 0.268612 1_1:+77493038 None:intergenic
CTTGGCCTTGGATTTACATA+TGG 0.280716 1_1:-77493432 Msa0045560:CDS
AGAGGTGAAACAGGGGATTC+TGG 0.285167 1_1:+77491462 None:intergenic
CTTGTCCAAGGGCTTGGCCT+TGG 0.293618 1_1:-77493444 Msa0045560:CDS
GTCTTTCAGATTGGCAGGGC+TGG 0.297154 1_1:-77492439 Msa0045560:intron
CTTCTGTCTTTCAGATTGGC+AGG 0.298237 1_1:-77492444 Msa0045560:intron
TATCAAATATATTCCTTCAT+AGG 0.300514 1_1:-77494513 Msa0045560:CDS
GATGGAAAATGGTCAGTCTT+TGG 0.304391 1_1:-77491601 Msa0045560:CDS
AACTGAGCAAAGCAGGTTCC+TGG 0.311177 1_1:+77492673 None:intergenic
AACACCTGTTTCCGAGGTTT+CGG 0.314250 1_1:-77496774 Msa0045560:CDS
CTCCTGCTTGACGAGGTTAC+TGG 0.327609 1_1:-77492346 Msa0045560:CDS
TTTATCAGTTCATTAGATAA+AGG 0.329293 1_1:-77492564 Msa0045560:CDS
GAAGGTGACTTCATCATTCT+AGG 0.331022 1_1:+77491717 None:intergenic
TTTATCTAATGAACTGATAA+AGG 0.332299 1_1:+77492566 None:intergenic
CTTGTTGGCAGAAACGGTTC+TGG 0.334028 1_1:-77492978 Msa0045560:CDS
GATGTTAAAAGAGGTGAAAC+AGG 0.336770 1_1:+77491453 None:intergenic
ACTCTGGGTTGGAAGGTTCT+TGG 0.346583 1_1:-77493382 Msa0045560:CDS
ATGGTTTCCAGAGGTCTATT+CGG 0.348319 1_1:-77496824 Msa0045560:CDS
AGCATAGGTGCTGCAATCTT+TGG 0.350563 1_1:-77491258 Msa0045560:CDS
TCCATCATCTTCTCAGGTGG+TGG 0.351488 1_1:+77491618 None:intergenic
CTCCATAACTGCTATATAAT+CGG 0.354018 1_1:+77492216 None:intergenic
CATCATTCTCCGGACTCTTT+CGG 0.354959 1_1:+77491047 None:intergenic
AGAAAGAGCCGTCAATAAAA+AGG 0.357842 1_1:-77491569 Msa0045560:CDS
CCGGTTTGACTGGTTTCTTA+TGG 0.360679 1_1:-77496600 Msa0045560:CDS
AAATGGAAGAAAGGGTGTTT+TGG 0.363523 1_1:+77497173 None:intergenic
GGCTCTGGATCTCCTTATGC+TGG 0.365134 1_1:-77492287 Msa0045560:CDS
AAAGAGTTTCTGCTGTATTT+CGG 0.365922 1_1:-77491689 Msa0045560:CDS
GAGTGGCTTTATGCTGTGTT+AGG 0.366699 1_1:-77491282 Msa0045560:CDS
CATGCAGTATTAGACCTCTT+TGG 0.367010 1_1:+77492097 None:intergenic
TTGGCCTTGGATTTACATAT+GGG 0.370237 1_1:-77493431 Msa0045560:CDS
AGCAGCCAGCATTGCTGAAC+AGG 0.370715 1_1:-77494458 Msa0045560:intron
AATTCATCAGAATAACTATC+TGG 0.371463 1_1:+77491387 None:intergenic
GAATGGCTGAGGAGCCAAAT+AGG 0.371511 1_1:-77492705 Msa0045560:CDS
GGAAGGTCAACTTGTTGAAA+TGG 0.373570 1_1:-77492194 Msa0045560:CDS
AGATAAAACCCACTTAAGAT+AGG 0.375966 1_1:+77493029 None:intergenic
TGAGGCTGAAAGGTCTGTTC+AGG 0.383030 1_1:-77492311 Msa0045560:CDS
CACTGACTGAACATCAATCT+TGG 0.384044 1_1:+77491512 None:intergenic
GTTTCATGTTGGATTCTTAC+CGG 0.391119 1_1:-77494906 Msa0045560:CDS
TTCAGCAATGCTGGCTGCTT+CGG 0.397294 1_1:+77494462 None:intergenic
AGACCTCTTTGGAAGTTTAG+TGG 0.398490 1_1:+77492108 None:intergenic
ATAAGTCTTGTCCAAGGGCT+TGG 0.402863 1_1:-77493450 Msa0045560:CDS
TCTATCGCTGCGGCGGCTCA+TGG 0.406934 1_1:-77496569 Msa0045560:CDS
GGAGTCTCCGTCACCGTTCA+TGG 0.407863 1_1:-77496744 Msa0045560:CDS
GTTCTTGTGCATTACAACTC+TGG 0.409584 1_1:-77493398 Msa0045560:CDS
GGCTCCGAAACCTCGGAAAC+AGG 0.409897 1_1:+77496770 None:intergenic
CCATCATCTTCTCAGGTGGT+GGG 0.410014 1_1:+77491619 None:intergenic
AACGCCACCGTGGCGGCGCG+TGG 0.412548 1_1:+77496958 None:intergenic
AAACATCAAGAATTTGAAAC+TGG 0.415298 1_1:-77492727 Msa0045560:CDS
CGGTTCTATGATCCAACATT+AGG 0.419536 1_1:-77492927 Msa0045560:intron
TTTGATACTTATGGAAATAA+CGG 0.425862 1_1:-77494816 Msa0045560:CDS
CGCAGGCAGTTTCCTATATA+CGG 0.427478 1_1:-77493557 Msa0045560:intron
TGCAGACAAGGTCCGTATAT+AGG 0.427618 1_1:+77493545 None:intergenic
ATAAGAGACAACATTGCATA+TGG 0.432177 1_1:-77492645 Msa0045560:CDS
CGTGTGCTGACCGGTTTGAC+TGG 0.433144 1_1:-77496610 Msa0045560:CDS
TTCTTGTGCATTACAACTCT+GGG 0.433681 1_1:-77493397 Msa0045560:CDS
CTGTTTGCTGTCATTCTAAG+TGG 0.434187 1_1:-77493318 Msa0045560:CDS
TATCAAAGAAACTCATATCT+TGG 0.435608 1_1:+77494832 None:intergenic
GGTTATTTGCGTGTGCTGAC+CGG 0.436044 1_1:-77496619 Msa0045560:CDS
TGCAAGGAAATATAGAGTTT+CGG 0.436135 1_1:-77493088 Msa0045560:CDS
AATTTCTACTCATTTGATCA+AGG 0.438840 1_1:-77493194 Msa0045560:CDS
TATCATCTCGAATAGTCTAT+AGG 0.440020 1_1:+77493160 None:intergenic
TGCCGATTATATAGCAGTTA+TGG 0.440582 1_1:-77492218 Msa0045560:CDS
GACTGGTTTCTTATGGTGGT+TGG 0.443295 1_1:-77496593 Msa0045560:CDS
TGGTTTCCAGAGGTCTATTC+GGG 0.443931 1_1:-77496823 Msa0045560:CDS
AATAACCTGTTCAGCAATGC+TGG 0.446255 1_1:+77494453 None:intergenic
ACCTCGGAAACAGGTGTTAA+CGG 0.446830 1_1:+77496779 None:intergenic
AAGGTCTGTTCAGGAGGCTC+TGG 0.447408 1_1:-77492302 Msa0045560:CDS
CACTTAAGATAGGGATTTCA+GGG 0.447489 1_1:+77493039 None:intergenic
CAGCTGCTGTTCCTTTCTCT+CGG 0.447662 1_1:-77496640 Msa0045560:CDS
GTGGCACTTGTTGGCAGAAA+CGG 0.450321 1_1:-77492984 Msa0045560:CDS
GAGGTGAAACAGGGGATTCT+GGG 0.450462 1_1:+77491463 None:intergenic
AGGAGCAGGATATGTTTCAT+AGG 0.451162 1_1:-77496493 Msa0045560:CDS
AACATCAATCTTGGGTAACT+CGG 0.452914 1_1:+77491521 None:intergenic
TTCATCATTCTAGGGGATGA+TGG 0.454080 1_1:+77491726 None:intergenic
CCTGAGAAGATGATGGAAAA+TGG 0.454583 1_1:-77491612 Msa0045560:CDS
GTCTGCTAAATGTTTGTGAA+TGG 0.455134 1_1:+77491409 None:intergenic
TCGTCAAGCAGGAGAATTGA+TGG 0.456288 1_1:+77492355 None:intergenic
GACGGCTGTCTGCCGTTCTC+CGG 0.457090 1_1:+77494887 None:intergenic
TTGACCATTGTTTATATCGC+TGG 0.457280 1_1:-77495041 Msa0045560:CDS
TTGTTGAGCGTCCCAGCATA+AGG 0.458690 1_1:+77492275 None:intergenic
CTGCTTCGGCATATGCATCT+TGG 0.459655 1_1:+77494476 None:intergenic
TAAAGTTATTCGCGTTCCTC+AGG 0.460172 1_1:-77496513 Msa0045560:CDS
AAGAAAACTGTGGCACTTGT+TGG 0.460477 1_1:-77492993 Msa0045560:CDS
GGTCCATTTATTGTTGCTGC+AGG 0.463592 1_1:-77494541 Msa0045560:CDS
GACTTCGGCGTCGCAGCAAA+TGG 0.466537 1_1:-77496708 Msa0045560:CDS
GCAGCAAATGGAAGCGGAGG+AGG 0.474705 1_1:-77496696 Msa0045560:CDS
AATGGAAGCGGAGGAGGAGA+TGG 0.476110 1_1:-77496690 Msa0045560:CDS
CACGCAAATAACCGAGAGAA+AGG 0.477263 1_1:+77496629 None:intergenic
CTGCAAGCTACTCTTAGATA+TGG 0.478005 1_1:-77493480 Msa0045560:CDS
GTCTTCTTGTAGTTGCGAGC+AGG 0.478899 1_1:+77491801 None:intergenic
GGAAGGTTCTTGGTTATACA+TGG 0.479438 1_1:-77493372 Msa0045560:CDS
GCTGTATTTCGGCCTTCAGA+TGG 0.482727 1_1:-77491678 Msa0045560:CDS
GTCCGGAGAATGATGTTCTC+AGG 0.484356 1_1:-77491039 Msa0045560:CDS
GATCAAAAGACGAGGATGAC+CGG 0.486671 1_1:+77493135 None:intergenic
GGAGGAGGAGATGGAAGAGA+TGG 0.490662 1_1:-77496681 Msa0045560:CDS
TCTTGCTTATGTTATCGGCC+TGG 0.491138 1_1:-77491220 Msa0045560:CDS
CCATAAGAAACCAGTCAAAC+CGG 0.491545 1_1:+77496600 None:intergenic
CACCTGAGAACATCATTCTC+CGG 0.493426 1_1:+77491037 None:intergenic
TATTCTCTGCAAGCCTATGA+AGG 0.496123 1_1:+77494500 None:intergenic
TTTGAATTCCGGTGCTGACT+AGG 0.497978 1_1:-77496857 Msa0045560:five_prime_UTR
CTCTGCCAGTCTCCAAAATG+AGG 0.498497 1_1:+77491317 None:intergenic
CTCCAGTAACCTCGTCAAGC+AGG 0.498817 1_1:+77492344 None:intergenic
AGAAAATGACCGAAAGAGTC+CGG 0.499502 1_1:-77491056 Msa0045560:CDS
TTCTGTCTTTCAGATTGGCA+GGG 0.500890 1_1:-77492443 Msa0045560:intron
TCACGATGAATTATTGTCCC+TGG 0.502356 1_1:-77492167 Msa0045560:CDS
ATACTCAAACTGAGCAAAGC+AGG 0.502837 1_1:+77492666 None:intergenic
TGGCGGCGCGTGGGTTGACT+CGG 0.505251 1_1:+77496968 None:intergenic
CCTGAAATCCCTATCTTAAG+TGG 0.507462 1_1:-77493038 Msa0045560:CDS
ACGCCACCGTGGCGGCGCGT+GGG 0.510467 1_1:+77496959 None:intergenic
CATTACAACTCTGGGTTGGA+AGG 0.510499 1_1:-77493389 Msa0045560:CDS
TTAGGATCAGATGTTAAAAG+AGG 0.510653 1_1:+77491444 None:intergenic
GTAAGATAATTACCTAATGT+TGG 0.511330 1_1:+77492915 None:intergenic
TATTCGCGTTCCTCAGGAGC+AGG 0.512093 1_1:-77496507 Msa0045560:CDS
AAGGTGACTTCATCATTCTA+GGG 0.512889 1_1:+77491718 None:intergenic
GGAGGAGATGGAAGAGATGG+AGG 0.513257 1_1:-77496678 Msa0045560:CDS
AAGTAGTATTATTCCACTCA+TGG 0.513976 1_1:-77492952 Msa0045560:CDS
AGTAGAAATTTGTCGCCGCT+TGG 0.514436 1_1:+77493207 None:intergenic
CGAGAGAAAGGAACAGCAGC+TGG 0.517647 1_1:+77496641 None:intergenic
TAAATCCAAGGCCAAGCCCT+TGG 0.517816 1_1:+77493439 None:intergenic
CTCCGGTGGCTCCGAAACCT+CGG 0.519246 1_1:+77496763 None:intergenic
AAAGGAACAGCAGCTGGCGG+CGG 0.520900 1_1:+77496647 None:intergenic
GTGCATCGTCAAACATCAAA+TGG 0.523887 1_1:-77491492 Msa0045560:CDS
CTGACTAGGATCGGAGATGA+TGG 0.523915 1_1:-77496843 Msa0045560:exon
GCCGATAACATAAGCAAGAA+GGG 0.524730 1_1:+77491224 None:intergenic
ACTGACTGAACATCAATCTT+GGG 0.529010 1_1:+77491513 None:intergenic
TTCCGAGGTTTCGGAGCCAC+CGG 0.529131 1_1:-77496765 Msa0045560:CDS
CCATTTATTGTTGCTGCAGG+AGG 0.529927 1_1:-77494538 Msa0045560:CDS
TGCATTTACAAATGAAACAT+TGG 0.532255 1_1:-77493526 Msa0045560:CDS
ATTTCTACTCATTTGATCAA+GGG 0.532444 1_1:-77493193 Msa0045560:CDS
TACATGGAAAAGCTCACGGC+GGG 0.532539 1_1:-77493356 Msa0045560:CDS
AAACACAGCACAACACAGCA+CGG 0.535800 1_1:+77497143 None:intergenic
TGATGACACTCATCACCTGC+GGG 0.536123 1_1:-77491175 Msa0045560:CDS
GGCCGATAACATAAGCAAGA+AGG 0.538894 1_1:+77491223 None:intergenic
CACGATGAATTATTGTCCCT+GGG 0.539344 1_1:-77492166 Msa0045560:CDS
ACCGTTAACACCTGTTTCCG+AGG 0.543254 1_1:-77496780 Msa0045560:CDS
TCTGCTAAATGTTTGTGAAT+GGG 0.547126 1_1:+77491410 None:intergenic
TGTTTGATCATTGCCTGCAT+GGG 0.547404 1_1:-77491135 Msa0045560:CDS
GCAGAAACTCTTTGAAGAGA+AGG 0.547760 1_1:+77491699 None:intergenic
ACTGAGCAAAGCAGGTTCCT+GGG 0.548759 1_1:+77492674 None:intergenic
TGTGCATTACAACTCTGGGT+TGG 0.548823 1_1:-77493393 Msa0045560:CDS
GGCTGAAAGGTCTGTTCAGG+AGG 0.552159 1_1:-77492308 Msa0045560:CDS
GAAGGTCAACTTGTTGAAAT+GGG 0.552929 1_1:-77492193 Msa0045560:CDS
GTGTTTGATCATTGCCTGCA+TGG 0.553990 1_1:-77491136 Msa0045560:CDS
CCCACCACCTGAGAAGATGA+TGG 0.554674 1_1:-77491619 Msa0045560:CDS
GCATTGATAACATTGGCTAC+AGG 0.555059 1_1:-77494562 Msa0045560:CDS
AAACTCTATATTTCCTTGCA+CGG 0.557401 1_1:+77493091 None:intergenic
TCAAGAATTTGAAACTGGAA+TGG 0.559269 1_1:-77492722 Msa0045560:CDS
GGATATGTTTCATAGGTTCA+AGG 0.561445 1_1:-77496486 Msa0045560:CDS
GATAAAACCCACTTAAGATA+GGG 0.563522 1_1:+77493030 None:intergenic
AATTCAAATTTAATATATCA+GGG 0.565015 1_1:+77490981 None:intergenic
GTTGGATTCTTACCGGAGAA+CGG 0.565490 1_1:-77494899 Msa0045560:CDS
GCAGATAGCATTGATAACAT+TGG 0.568782 1_1:-77494569 Msa0045560:CDS
AACTGTCACGATACCCATGC+AGG 0.569402 1_1:+77491122 None:intergenic
ATATTTCCTTGCACGGACAC+AGG 0.569615 1_1:+77493098 None:intergenic
AGTGCTCCTGTGTCCGTGCA+AGG 0.569910 1_1:-77493104 Msa0045560:CDS
GCTCTGGATCTCCTTATGCT+GGG 0.570302 1_1:-77492286 Msa0045560:CDS
GGTGGTGGGCTCTGTACTTG+TGG 0.572156 1_1:+77491633 None:intergenic
GATAGTAAGTTGTCACCACC+AGG 0.572453 1_1:+77491202 None:intergenic
ATTTCTACTTTGGTATAATG+GGG 0.572982 1_1:-77491080 Msa0045560:CDS
TCATAGAACCGCTCCATGAG+TGG 0.573109 1_1:+77492939 None:intergenic
TATGCTGTGTTAGGAAGCAT+AGG 0.573427 1_1:-77491273 Msa0045560:CDS
GACTATTCGAGATGATAAGC+CGG 0.573611 1_1:-77493154 Msa0045560:CDS
ATATTAATAAGTCTTGTCCA+AGG 0.574767 1_1:-77493456 Msa0045560:CDS
CTCTTCAATTTGATCCGCTG+TGG 0.577011 1_1:+77492614 None:intergenic
GGCGTCGCAGCAAATGGAAG+CGG 0.577843 1_1:-77496702 Msa0045560:CDS
CTGAAATCCCTATCTTAAGT+GGG 0.580207 1_1:-77493037 Msa0045560:CDS
ATTTGAAACTGGAATGGCTG+AGG 0.588630 1_1:-77492716 Msa0045560:CDS
GACTGAATTGTGAATCAGAT+CGG 0.590872 1_1:+77496898 None:intergenic
TATATAGCAGTTATGGAGGA+AGG 0.590982 1_1:-77492211 Msa0045560:CDS
AGTCAACCCACGCGCCGCCA+CGG 0.591009 1_1:-77496965 Msa0045560:five_prime_UTR
GTTTGACTGGTTTCTTATGG+TGG 0.591521 1_1:-77496597 Msa0045560:CDS
TTCATTTGTAAATGCAGACA+AGG 0.592190 1_1:+77493533 None:intergenic
ATGAACGGTGACGGAGACTC+CGG 0.592451 1_1:+77496746 None:intergenic
AAGTTAAAGAAGCCATCTGA+AGG 0.595548 1_1:+77491666 None:intergenic
TGACCACCCGAATAGACCTC+TGG 0.597034 1_1:+77496817 None:intergenic
ATCAATTCTCCTGCTTGACG+AGG 0.598255 1_1:-77492353 Msa0045560:CDS
TAAGAGACAACATTGCATAT+GGG 0.599659 1_1:-77492644 Msa0045560:CDS
AGTGAAAATGAACGAAACAA+AGG 0.602001 1_1:-77491361 Msa0045560:CDS
ACCATTGTTTATATCGCTGG+TGG 0.602507 1_1:-77495038 Msa0045560:CDS
GCTGAGGAGCCAAATAGGAC+TGG 0.602832 1_1:-77492700 Msa0045560:CDS
CCGATGTCCATGAACGGTGA+CGG 0.605429 1_1:+77496737 None:intergenic
GAGACAACATTGCATATGGG+AGG 0.606543 1_1:-77492641 Msa0045560:CDS
AGACAACATTGCATATGGGA+GGG 0.608684 1_1:-77492640 Msa0045560:CDS
ACATCAATCTTGGGTAACTC+GGG 0.609253 1_1:+77491522 None:intergenic
ATTCCGGTGCTGACTAGGAT+CGG 0.610425 1_1:-77496852 Msa0045560:five_prime_UTR
GGACATCGGAGGTGAGACTT+CGG 0.611227 1_1:-77496723 Msa0045560:CDS
CAACAATAATAATTGCTCGA+AGG 0.611770 1_1:-77492258 Msa0045560:CDS
TCTCCGATCCTAGTCAGCAC+CGG 0.611877 1_1:+77496849 None:intergenic
TATTAATAAGTCTTGTCCAA+GGG 0.613861 1_1:-77493455 Msa0045560:CDS
GTCGCAGCAAATGGAAGCGG+AGG 0.614849 1_1:-77496699 Msa0045560:CDS
AGAGCTACTTCGATGTGAAG+AGG 0.620142 1_1:-77492131 Msa0045560:CDS
TTTCTACTTTGGTATAATGG+GGG 0.620150 1_1:-77491079 Msa0045560:CDS
GTTTAAAAGAGGTTTCATGT+TGG 0.621002 1_1:-77494917 Msa0045560:intron
CAAGCCCATATGTAAATCCA+AGG 0.621024 1_1:+77493427 None:intergenic
TTTCCAGAGGTCTATTCGGG+TGG 0.623545 1_1:-77496820 Msa0045560:CDS
TGCTTATGTTATCGGCCTGG+TGG 0.626013 1_1:-77491217 Msa0045560:CDS
ATGTTAAAAGAGGTGAAACA+GGG 0.626894 1_1:+77491454 None:intergenic
TCTGCCAGTCTCCAAAATGA+GGG 0.627825 1_1:+77491318 None:intergenic
AGATAAAGGTTATGATACAC+AGG 0.628381 1_1:-77492550 Msa0045560:intron
TGAACGAAACAAAGGATGCA+CGG 0.629054 1_1:-77491353 Msa0045560:CDS
GAGAAAGGAACAGCAGCTGG+CGG 0.630308 1_1:+77496644 None:intergenic
CCGTCACCGTTCATGGACAT+CGG 0.632405 1_1:-77496737 Msa0045560:CDS
GTTATACATGGAAAAGCTCA+CGG 0.633111 1_1:-77493360 Msa0045560:CDS
GGTGTTAACGGTTGCACATG+TGG 0.635631 1_1:+77496791 None:intergenic
GCTCTGCATATAAGCCACCC+AGG 0.636857 1_1:+77492149 None:intergenic
CGATTATATAGCAGTTATGG+AGG 0.636978 1_1:-77492215 Msa0045560:CDS
TGAAACATATCCTGCTCCTG+AGG 0.638696 1_1:+77496497 None:intergenic
CCAAATAGGACTGGTCACCC+AGG 0.639300 1_1:-77492691 Msa0045560:CDS
TTGATGACACTCATCACCTG+CGG 0.641594 1_1:-77491176 Msa0045560:CDS
GTATTATTCCACTCATGGAG+CGG 0.643742 1_1:-77492947 Msa0045560:CDS
AGGTGACTTCATCATTCTAG+GGG 0.646381 1_1:+77491719 None:intergenic
GTGCTGTGAAAGTACTATGA+AGG 0.647643 1_1:+77497117 None:intergenic
AATATGGCTACATTCTTCAG+TGG 0.650090 1_1:-77494619 Msa0045560:CDS
ATGACACTCATCACCTGCGG+GGG 0.652032 1_1:-77491173 Msa0045560:CDS
CCGATAACATAAGCAAGAAG+GGG 0.652192 1_1:+77491225 None:intergenic
AACGGTGACGGAGACTCCGG+TGG 0.652730 1_1:+77496749 None:intergenic
TCACCTCCGATGTCCATGAA+CGG 0.654055 1_1:+77496731 None:intergenic
CACAGCGGATCAAATTGAAG+AGG 0.655221 1_1:-77492613 Msa0045560:CDS
CAACCCACGCGCCGCCACGG+TGG 0.658778 1_1:-77496962 Msa0045560:five_prime_UTR
CTGCTTGACGAGGTTACTGG+AGG 0.662037 1_1:-77492343 Msa0045560:CDS
AGGCCACTAAACTTCCAAAG+AGG 0.663519 1_1:-77492111 Msa0045560:intron
GGTGGTTGGTTCTATCGCTG+CGG 0.674740 1_1:-77496579 Msa0045560:CDS
ACATGGAAAAGCTCACGGCG+GGG 0.678328 1_1:-77493355 Msa0045560:CDS
ACCACCAGCGATATAAACAA+TGG 0.679339 1_1:+77495037 None:intergenic
GGTTGGTTCTATCGCTGCGG+CGG 0.680433 1_1:-77496576 Msa0045560:CDS
CTCTGCATATAAGCCACCCA+GGG 0.681231 1_1:+77492150 None:intergenic
TATGTTTCATAGGTTCAAGG+AGG 0.689230 1_1:-77496483 Msa0045560:intron
GATGAATTATTGTCCCTGGG+TGG 0.689606 1_1:-77492163 Msa0045560:CDS
TCAAATTTAATATATCAGGG+TGG 0.690519 1_1:+77490984 None:intergenic
ACAAAGGATGCACGGCATCG+AGG 0.691236 1_1:-77491345 Msa0045560:CDS
TCGGAGATGATGGTTTCCAG+AGG 0.696980 1_1:-77496833 Msa0045560:exon
TCACCGTTCATGGACATCGG+AGG 0.699092 1_1:-77496734 Msa0045560:CDS
TGACACTCATCACCTGCGGG+GGG 0.706696 1_1:-77491172 Msa0045560:CDS
GATGACACTCATCACCTGCG+GGG 0.707339 1_1:-77491174 Msa0045560:CDS
TGTTAAAAGAGGTGAAACAG+GGG 0.708654 1_1:+77491455 None:intergenic
TCCGTCGTGATCAAAAGACG+AGG 0.725275 1_1:+77493127 None:intergenic
AGTTCCTGCTAAGAAAACTG+TGG 0.737213 1_1:-77493003 Msa0045560:CDS
GTTAACGGTTGCACATGTGG+TGG 0.753080 1_1:+77496794 None:intergenic
ATTAAGGGGATTAAACCAAG+CGG 0.757017 1_1:-77493222 Msa0045560:intron
ATATGGGAGGGATACCACAG+CGG 0.794678 1_1:-77492628 Msa0045560:CDS
ATACATGGAAAAGCTCACGG+CGG 0.795535 1_1:-77493357 Msa0045560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTATTATTTTTTAAAT+GGG + chr1_1:77493039-77493058 None:intergenic 0.0%
!! TGACAAAAATAAATATAATT+AGG - chr1_1:77492719-77492738 Msa0045560:CDS 10.0%
!! AAAAAATAATAATATTCTGT+AGG - chr1_1:77493043-77493062 Msa0045560:CDS 10.0%
!! GTTAAAATTATTAATATCTT+CGG - chr1_1:77494390-77494409 Msa0045560:intron 10.0%
!! ATGTATAATAAATTAACTAT+GGG + chr1_1:77494450-77494469 None:intergenic 10.0%
!! TTTATGGAAAATATAATAAA+TGG - chr1_1:77496149-77496168 Msa0045560:intron 10.0%
!!! TTTTTTCAATTTTTGAATTC+CGG - chr1_1:77491317-77491336 Msa0045560:CDS 15.0%
!! AAAGCATGAATAATATTATT+AGG + chr1_1:77493938-77493957 None:intergenic 15.0%
!! ATAATATTATTCATGCTTTA+AGG - chr1_1:77493939-77493958 Msa0045560:intron 15.0%
!! TAATATTATTCATGCTTTAA+GGG - chr1_1:77493940-77493959 Msa0045560:intron 15.0%
!!! CTGTTTTATTTATTATGTTA+TGG - chr1_1:77494032-77494051 Msa0045560:intron 15.0%
!! ATTAAATTGTACAAATACAT+AGG - chr1_1:77494368-77494387 Msa0045560:intron 15.0%
!! CATGTATAATAAATTAACTA+TGG + chr1_1:77494451-77494470 None:intergenic 15.0%
!! CATTTATTTAATTGTAAGAT+TGG - chr1_1:77494510-77494529 Msa0045560:CDS 15.0%
!! TTCATCAAAATCAAATATAA+AGG + chr1_1:77494564-77494583 None:intergenic 15.0%
!! AATAAGAAAATATAGAAGTT+GGG + chr1_1:77494908-77494927 None:intergenic 15.0%
!! AAATAAGAAAATATAGAAGT+TGG + chr1_1:77494909-77494928 None:intergenic 15.0%
!!! AAAAACAAATATTTTGATAG+CGG - chr1_1:77496180-77496199 Msa0045560:intron 15.0%
!!! ATTTTTTCTATCGAAGTTTT+CGG + chr1_1:77491131-77491150 None:intergenic 20.0%
!!! ATTGGTTTTTCATGAAAATT+AGG - chr1_1:77491854-77491873 Msa0045560:intron 20.0%
!! TGATATATTTCCCAATATTA+GGG + chr1_1:77492410-77492429 None:intergenic 20.0%
!! TTGATATATTTCCCAATATT+AGG + chr1_1:77492411-77492430 None:intergenic 20.0%
!!! GTTTTGGTAATTTTTGTTTA+CGG + chr1_1:77492692-77492711 None:intergenic 20.0%
!!! TTTTTGTCAATAATCTGTTT+TGG + chr1_1:77492708-77492727 None:intergenic 20.0%
!! AAATATAATTAGGATTCTAG+TGG - chr1_1:77492729-77492748 Msa0045560:CDS 20.0%
!! AATATAATTAGGATTCTAGT+GGG - chr1_1:77492730-77492749 Msa0045560:CDS 20.0%
!!! ATAGATTATGTTTTAAAACC+TGG - chr1_1:77492964-77492983 Msa0045560:CDS 20.0%
!! TACCAATTTAATTATTCTGA+AGG - chr1_1:77493010-77493029 Msa0045560:CDS 20.0%
!!! TTTTCTTTCTTGTTTAAAAG+AGG - chr1_1:77493257-77493276 Msa0045560:intron 20.0%
!! TTTGATACTTATGGAAATAA+CGG - chr1_1:77493369-77493388 Msa0045560:CDS 20.0%
!! TGCAAATTTATTATTCTTTG+TGG - chr1_1:77493468-77493487 Msa0045560:CDS 20.0%
!! TGGGAATTATATTCATAATA+TGG - chr1_1:77493550-77493569 Msa0045560:CDS 20.0%
!!! TTATTGCTTTTATCAATTGT+TGG - chr1_1:77493594-77493613 Msa0045560:intron 20.0%
!! TATCAAATATATTCCTTCAT+AGG - chr1_1:77493672-77493691 Msa0045560:intron 20.0%
!!! GATCTTTTGTTCATTTAAAT+TGG - chr1_1:77494112-77494131 Msa0045560:intron 20.0%
!! TTTATCAATACCCTTATTAA+TGG + chr1_1:77494338-77494357 None:intergenic 20.0%
!!! TTATACATGTAATAGTTTTG+AGG - chr1_1:77494462-77494481 Msa0045560:CDS 20.0%
!!! TATTTTTGTTACTGGATTAA+GGG - chr1_1:77494948-77494967 Msa0045560:intron 20.0%
!! TTTATCTAATGAACTGATAA+AGG + chr1_1:77495622-77495641 None:intergenic 20.0%
!! TTTATCAGTTCATTAGATAA+AGG - chr1_1:77495621-77495640 Msa0045560:intron 20.0%
!! AAATCAGTGTTCTTCTTTTT+AGG - chr1_1:77491760-77491779 Msa0045560:CDS 25.0%
!!! AGAAATCACTTTATTTTCAC+TGG + chr1_1:77491796-77491815 None:intergenic 25.0%
! TTGGTTAAGTGTTAAGAAAA+TGG - chr1_1:77491997-77492016 Msa0045560:intron 25.0%
!!! AAAGCTAGTCTTTTATTAGT+TGG - chr1_1:77492113-77492132 Msa0045560:CDS 25.0%
!!! AAGCTAGTCTTTTATTAGTT+GGG - chr1_1:77492114-77492133 Msa0045560:CDS 25.0%
!!! AATAAGATACTGTTTTAGAG+AGG + chr1_1:77492174-77492193 None:intergenic 25.0%
! CTAAAACAGTATCTTATTGT+AGG - chr1_1:77492176-77492195 Msa0045560:CDS 25.0%
! ATAATTGTGTGTTTGAACAA+TGG - chr1_1:77492315-77492334 Msa0045560:CDS 25.0%
! TTACTAGTAAACCCTAATAT+TGG - chr1_1:77492396-77492415 Msa0045560:CDS 25.0%
! TACTAGTAAACCCTAATATT+GGG - chr1_1:77492397-77492416 Msa0045560:CDS 25.0%
! CAAAAAAGTTGAATCACAAT+GGG + chr1_1:77492648-77492667 None:intergenic 25.0%
! ACAAAAAAGTTGAATCACAA+TGG + chr1_1:77492649-77492668 None:intergenic 25.0%
!!! GTAATTTTTGTTTACGGTAT+GGG + chr1_1:77492686-77492705 None:intergenic 25.0%
! AATAGTGACATAATTTAACG+TGG - chr1_1:77492923-77492942 Msa0045560:intron 25.0%
! GTCCTTCAGAATAATTAAAT+TGG + chr1_1:77493015-77493034 None:intergenic 25.0%
!!! AACATATTTTGATCTGATGA+CGG + chr1_1:77493319-77493338 None:intergenic 25.0%
! TATCAAAGAAACTCATATCT+TGG + chr1_1:77493356-77493375 None:intergenic 25.0%
! ATGAGTTTCTTTGATACTTA+TGG - chr1_1:77493360-77493379 Msa0045560:CDS 25.0%
!!! TTATTGACTTCTAATGATAC+AGG - chr1_1:77493526-77493545 Msa0045560:CDS 25.0%
! GCATTGAATTATTGAACAAA+TGG - chr1_1:77493780-77493799 Msa0045560:intron 25.0%
! TTAAAATCAAAATCCACCAT+TGG + chr1_1:77493845-77493864 None:intergenic 25.0%
! TTTAACATGTAGTGAAAGAA+AGG - chr1_1:77493860-77493879 Msa0045560:intron 25.0%
! AGTCTTTCATATCATGTATT+TGG - chr1_1:77493900-77493919 Msa0045560:intron 25.0%
!!! ACAACAATTTTTGAGAGAAA+CGG - chr1_1:77494090-77494109 Msa0045560:intron 25.0%
! ATGTTTCATGAATTATGTCA+TGG + chr1_1:77494147-77494166 None:intergenic 25.0%
! AAATATTCTGCTTGTAGTTA+TGG - chr1_1:77494200-77494219 Msa0045560:intron 25.0%
!!! TCCTACTTTTTAGCATAAAT+GGG - chr1_1:77494296-77494315 Msa0045560:intron 25.0%
! TGCATTTACAAATGAAACAT+TGG - chr1_1:77494659-77494678 Msa0045560:intron 25.0%
!! ATATTAATAAGTCTTGTCCA+AGG - chr1_1:77494729-77494748 Msa0045560:intron 25.0%
!! TATTAATAAGTCTTGTCCAA+GGG - chr1_1:77494730-77494749 Msa0045560:intron 25.0%
!!! TTCCTTACTATTTTTGTTAC+TGG - chr1_1:77494940-77494959 Msa0045560:intron 25.0%
! ATCCAGTAACAAAAATAGTA+AGG + chr1_1:77494945-77494964 None:intergenic 25.0%
!!! CTATTTTTGTTACTGGATTA+AGG - chr1_1:77494947-77494966 Msa0045560:intron 25.0%
!! ATTTTTGTTACTGGATTAAG+GGG - chr1_1:77494949-77494968 Msa0045560:intron 25.0%
! AATTTCTACTCATTTGATCA+AGG - chr1_1:77494991-77495010 Msa0045560:intron 25.0%
! ATTTCTACTCATTTGATCAA+GGG - chr1_1:77494992-77495011 Msa0045560:intron 25.0%
! GTAAGATAATTACCTAATGT+TGG + chr1_1:77495273-77495292 None:intergenic 25.0%
! TCTCATTCAAATTACTCTAT+AGG - chr1_1:77495317-77495336 Msa0045560:intron 25.0%
!! ATTTTCCAATTTGTGATTTC+AGG - chr1_1:77495414-77495433 Msa0045560:intron 25.0%
!! AAACATCAAGAATTTGAAAC+TGG - chr1_1:77495458-77495477 Msa0045560:intron 25.0%
!!! TTGCACTATTGTCTTTTTTA+TGG - chr1_1:77496133-77496152 Msa0045560:intron 25.0%
! AATTCATCAGAATAACTATC+TGG + chr1_1:77496801-77496820 None:intergenic 25.0%
!! TTTTTACAGCATTTCTACTT+TGG - chr1_1:77497095-77497114 Msa0045560:five_prime_UTR 25.0%
! CATTTCTACTTTGGTATAAT+GGG - chr1_1:77497104-77497123 Msa0045560:five_prime_UTR 25.0%
! ATTTCTACTTTGGTATAATG+GGG - chr1_1:77497105-77497124 Msa0045560:five_prime_UTR 25.0%
GTTTGATGTGTTTGAAGAAT+TGG - chr1_1:77491836-77491855 Msa0045560:intron 30.0%
! GGTTTTTCATGAAAATTAGG+TGG - chr1_1:77491857-77491876 Msa0045560:intron 30.0%
GAGTAATACTGGAAATTGTT+TGG - chr1_1:77491956-77491975 Msa0045560:intron 30.0%
!!! GTTGTTCTTTTAGCTTTAGT+TGG - chr1_1:77491978-77491997 Msa0045560:intron 30.0%
GTGTTAAGAAAATGGAGAAT+TGG - chr1_1:77492005-77492024 Msa0045560:intron 30.0%
!!! AGCTAGTCTTTTATTAGTTG+GGG - chr1_1:77492115-77492134 Msa0045560:CDS 30.0%
! AAAGGAAGGGTAATTTTCAA+AGG - chr1_1:77492267-77492286 Msa0045560:CDS 30.0%
! AAGGAAGGGTAATTTTCAAA+GGG - chr1_1:77492268-77492287 Msa0045560:CDS 30.0%
!! TTTTCAAAGGGAGTTGATTT+AGG - chr1_1:77492280-77492299 Msa0045560:CDS 30.0%
!! ATTTAGGTTGAATTCATGCT+TGG + chr1_1:77492464-77492483 None:intergenic 30.0%
AATATTTAGCACTCCTCTTA+CGG + chr1_1:77492488-77492507 None:intergenic 30.0%
!! AAGAGGAGTGCTAAATATTA+CGG - chr1_1:77492489-77492508 Msa0045560:intron 30.0%
!! GGTAATTTTTGTTTACGGTA+TGG + chr1_1:77492687-77492706 None:intergenic 30.0%
ACACTACTAAACCCTAATAT+TGG - chr1_1:77492762-77492781 Msa0045560:intron 30.0%
ATTGTCGCAATCCAATATTA+GGG + chr1_1:77492776-77492795 None:intergenic 30.0%
ACAATCTTACCTTTAAACAC+AGG - chr1_1:77492791-77492810 Msa0045560:intron 30.0%
AATGTTGAATACCAATGTGA+TGG + chr1_1:77492840-77492859 None:intergenic 30.0%
!!! ATGTTTTAAAACCTGGTTCT+TGG - chr1_1:77492971-77492990 Msa0045560:CDS 30.0%
GAAAGAAAAATAAGAACAGC+AGG + chr1_1:77493246-77493265 None:intergenic 30.0%
GTTTAAAAGAGGTTTCATGT+TGG - chr1_1:77493268-77493287 Msa0045560:intron 30.0%
CATTCAATGTATCATTCCAA+TGG - chr1_1:77493826-77493845 Msa0045560:intron 30.0%
TGTTATGGAAATAGAAATGC+TGG - chr1_1:77494047-77494066 Msa0045560:intron 30.0%
AATTGTTGTCATCTCAGTAA+CGG + chr1_1:77494079-77494098 None:intergenic 30.0%
TTTCACCATATACATGTCAT+GGG + chr1_1:77494260-77494279 None:intergenic 30.0%
!!! CTCCTACTTTTTAGCATAAA+TGG - chr1_1:77494295-77494314 Msa0045560:intron 30.0%
TCCCATTTATGCTAAAAAGT+AGG + chr1_1:77494300-77494319 None:intergenic 30.0%
!! TACTTTTTAGCATAAATGGG+AGG - chr1_1:77494299-77494318 Msa0045560:intron 30.0%
!! ACTTTTTAGCATAAATGGGA+GGG - chr1_1:77494300-77494319 Msa0045560:intron 30.0%
TAGGATTAGGCCATTAATAA+GGG - chr1_1:77494325-77494344 Msa0045560:intron 30.0%
!!! TAGTTTTGAGGTTTACTCTA+TGG - chr1_1:77494474-77494493 Msa0045560:CDS 30.0%
TTCATTTGTAAATGCAGACA+AGG + chr1_1:77494655-77494674 None:intergenic 30.0%
TATCATCTCGAATAGTCTAT+AGG + chr1_1:77495028-77495047 None:intergenic 30.0%
AAACTCTATATTTCCTTGCA+CGG + chr1_1:77495097-77495116 None:intergenic 30.0%
TGCAAGGAAATATAGAGTTT+CGG - chr1_1:77495097-77495116 Msa0045560:intron 30.0%
GATAAAACCCACTTAAGATA+GGG + chr1_1:77495158-77495177 None:intergenic 30.0%
AGATAAAACCCACTTAAGAT+AGG + chr1_1:77495159-77495178 None:intergenic 30.0%
AAGTAGTATTATTCCACTCA+TGG - chr1_1:77495233-77495252 Msa0045560:intron 30.0%
! ATTTTCCAATCTATGCTTTC+AGG - chr1_1:77495358-77495377 Msa0045560:intron 30.0%
! TCAAGAATTTGAAACTGGAA+TGG - chr1_1:77495463-77495482 Msa0045560:intron 30.0%
ATAAGAGACAACATTGCATA+TGG - chr1_1:77495540-77495559 Msa0045560:intron 30.0%
TAAGAGACAACATTGCATAT+GGG - chr1_1:77495541-77495560 Msa0045560:intron 30.0%
AGATAAAGGTTATGATACAC+AGG - chr1_1:77495635-77495654 Msa0045560:intron 30.0%
CAACAATAATAATTGCTCGA+AGG - chr1_1:77495927-77495946 Msa0045560:intron 30.0%
CTCCATAACTGCTATATAAT+CGG + chr1_1:77495972-77495991 None:intergenic 30.0%
GTATTTGTTTATTGTCATGC+AGG - chr1_1:77496358-77496377 Msa0045560:intron 30.0%
CTGAAGAATCTTTCTCAATT+TGG + chr1_1:77496419-77496438 None:intergenic 30.0%
AAAGAGTTTCTGCTGTATTT+CGG - chr1_1:77496496-77496515 Msa0045560:CDS 30.0%
ATGTTAAAAGAGGTGAAACA+GGG + chr1_1:77496734-77496753 None:intergenic 30.0%
TTAGGATCAGATGTTAAAAG+AGG + chr1_1:77496744-77496763 None:intergenic 30.0%
TCTGCTAAATGTTTGTGAAT+GGG + chr1_1:77496778-77496797 None:intergenic 30.0%
AGTGAAAATGAACGAAACAA+AGG - chr1_1:77496824-77496843 Msa0045560:CDS 30.0%
GTAGAAATGCTGTAAAAAGT+TGG + chr1_1:77497093-77497112 None:intergenic 30.0%
GCATTTCTACTTTGGTATAA+TGG - chr1_1:77497103-77497122 Msa0045560:five_prime_UTR 30.0%
TTTCTACTTTGGTATAATGG+GGG - chr1_1:77497106-77497125 Msa0045560:five_prime_UTR 30.0%
!!! GGGTGTTTTGGTAAATTGAA+TGG + chr1_1:77491003-77491022 None:intergenic 35.0%
!!! AAATGGAAGAAAGGGTGTTT+TGG + chr1_1:77491015-77491034 None:intergenic 35.0%
GAGCTGAAAAATGGAAGAAA+GGG + chr1_1:77491023-77491042 None:intergenic 35.0%
! TTCTATCGAAGTTTTCGGTT+AGG + chr1_1:77491126-77491145 None:intergenic 35.0%
!!! GGTAACTACTTTTTCTGTTG+GGG + chr1_1:77491269-77491288 None:intergenic 35.0%
!!! CGGTAACTACTTTTTCTGTT+GGG + chr1_1:77491270-77491289 None:intergenic 35.0%
!!! TCGGTAACTACTTTTTCTGT+TGG + chr1_1:77491271-77491290 None:intergenic 35.0%
GACTGAATTGTGAATCAGAT+CGG + chr1_1:77491290-77491309 None:intergenic 35.0%
GGATATGTTTCATAGGTTCA+AGG - chr1_1:77491699-77491718 Msa0045560:CDS 35.0%
TATGTTTCATAGGTTCAAGG+AGG - chr1_1:77491702-77491721 Msa0045560:CDS 35.0%
!! AGGTGGACTATTATAGTATG+TGG - chr1_1:77491874-77491893 Msa0045560:intron 35.0%
TATTACTCTCAAATAGCTCG+AGG + chr1_1:77491944-77491963 None:intergenic 35.0%
GAGCTATTTGAGAGTAATAC+TGG - chr1_1:77491945-77491964 Msa0045560:intron 35.0%
AGAATCTAGAGAGAAGGATT+AGG - chr1_1:77492034-77492053 Msa0045560:intron 35.0%
GAATCTAGAGAGAAGGATTA+GGG - chr1_1:77492035-77492054 Msa0045560:intron 35.0%
AATCTAGAGAGAAGGATTAG+GGG - chr1_1:77492036-77492055 Msa0045560:intron 35.0%
GTTTGTCGACCAAATTATGA+CGG - chr1_1:77492076-77492095 Msa0045560:intron 35.0%
CAATCTCATCCGTCATAATT+TGG + chr1_1:77492088-77492107 None:intergenic 35.0%
!!! GCTAGTCTTTTATTAGTTGG+GGG - chr1_1:77492116-77492135 Msa0045560:CDS 35.0%
TTTCATTGGGGTTATGTCAA+AGG - chr1_1:77492249-77492268 Msa0045560:CDS 35.0%
ACAATGGATGTGATCAATCA+AGG - chr1_1:77492331-77492350 Msa0045560:CDS 35.0%
TTCAACCTAAATACCGTAAG+AGG - chr1_1:77492472-77492491 Msa0045560:intron 35.0%
TTCCTCACGAATTTCACAAA+CGG - chr1_1:77492518-77492537 Msa0045560:intron 35.0%
CATATAGTTACTTCCCACTT+TGG - chr1_1:77492570-77492589 Msa0045560:CDS 35.0%
ATGGAGGGGTAAAATTGAAA+TGG - chr1_1:77492601-77492620 Msa0045560:CDS 35.0%
AATGGTCCTATCATACTTGT+TGG - chr1_1:77492619-77492638 Msa0045560:CDS 35.0%
ATTAGGGTTTAGTAGTGTGA+TGG + chr1_1:77492760-77492779 None:intergenic 35.0%
GATTGTCGCAATCCAATATT+AGG + chr1_1:77492777-77492796 None:intergenic 35.0%
TCAACAAAGCCTGTGTTTAA+AGG + chr1_1:77492803-77492822 None:intergenic 35.0%
ACAGACAACAATTACGTTGA+AGG - chr1_1:77492898-77492917 Msa0045560:intron 35.0%
CATAATCTATAGTCCGTTGT+AGG + chr1_1:77492954-77492973 None:intergenic 35.0%
ACATCTGAGTCACAAACAAT+GGG + chr1_1:77493070-77493089 None:intergenic 35.0%
AACATCTGAGTCACAAACAA+TGG + chr1_1:77493071-77493090 None:intergenic 35.0%
TGCAAAAGAAACAACAGCAA+GGG + chr1_1:77493117-77493136 None:intergenic 35.0%
TTGACCATTGTTTATATCGC+TGG - chr1_1:77493144-77493163 Msa0045560:CDS 35.0%
GTTTCATGTTGGATTCTTAC+CGG - chr1_1:77493279-77493298 Msa0045560:intron 35.0%
TGACTTCTAATGATACAGGT+TGG - chr1_1:77493530-77493549 Msa0045560:CDS 35.0%
GACTTCTAATGATACAGGTT+GGG - chr1_1:77493531-77493550 Msa0045560:CDS 35.0%
AATATGGCTACATTCTTCAG+TGG - chr1_1:77493566-77493585 Msa0045560:intron 35.0%
!! GCAGATAGCATTGATAACAT+TGG - chr1_1:77493616-77493635 Msa0045560:intron 35.0%
TCAATGTATCATTCCAATGG+TGG - chr1_1:77493829-77493848 Msa0045560:intron 35.0%
CTTTCACCATATACATGTCA+TGG + chr1_1:77494261-77494280 None:intergenic 35.0%
GACATGTATATGGTGAAAGA+AGG - chr1_1:77494262-77494281 Msa0045560:intron 35.0%
GTAGGATTAGGCCATTAATA+AGG - chr1_1:77494324-77494343 Msa0045560:intron 35.0%
! TTTGAGGTTTACTCTATGGT+TGG - chr1_1:77494478-77494497 Msa0045560:CDS 35.0%
ATGAATTATTCATGTGCCGT+TGG - chr1_1:77494579-77494598 Msa0045560:CDS 35.0%
TTATACACACTCAGAACCAA+CGG + chr1_1:77494598-77494617 None:intergenic 35.0%
!! TTGGCCTTGGATTTACATAT+GGG - chr1_1:77494754-77494773 Msa0045560:intron 35.0%
TTCTTGTGCATTACAACTCT+GGG - chr1_1:77494788-77494807 Msa0045560:CDS 35.0%
GTTATACATGGAAAAGCTCA+CGG - chr1_1:77494825-77494844 Msa0045560:CDS 35.0%
ATTAAGGGGATTAAACCAAG+CGG - chr1_1:77494963-77494982 Msa0045560:intron 35.0%
CACTTAAGATAGGGATTTCA+GGG + chr1_1:77495149-77495168 None:intergenic 35.0%
CTGAAATCCCTATCTTAAGT+GGG - chr1_1:77495148-77495167 Msa0045560:intron 35.0%
! TCAGGAGAAGTTCTTTTAGA+TGG - chr1_1:77495376-77495395 Msa0045560:intron 35.0%
CTTCTCCTGAAATCACAAAT+TGG + chr1_1:77495422-77495441 None:intergenic 35.0%
! TCAGGAGAAGTTCTTTTAGA+TGG - chr1_1:77495376-77495395 Msa0045560:intron 35.0%
! TGCCGATTATATAGCAGTTA+TGG - chr1_1:77495967-77495986 Msa0045560:intron 35.0%
CGATTATATAGCAGTTATGG+AGG - chr1_1:77495970-77495989 Msa0045560:intron 35.0%
TATATAGCAGTTATGGAGGA+AGG - chr1_1:77495974-77495993 Msa0045560:intron 35.0%
!! GAAGGTCAACTTGTTGAAAT+GGG - chr1_1:77495992-77496011 Msa0045560:intron 35.0%
AAGACAATAGTGCAAAGCAA+AGG + chr1_1:77496128-77496147 None:intergenic 35.0%
!! ATCGCGTTCTAAACAGTTTT+CGG - chr1_1:77496308-77496327 Msa0045560:intron 35.0%
CGGGATTTCAAAAGTGATAT+AGG - chr1_1:77496328-77496347 Msa0045560:intron 35.0%
AAGGTGACTTCATCATTCTA+GGG + chr1_1:77496470-77496489 None:intergenic 35.0%
AAGTTAAAGAAGCCATCTGA+AGG + chr1_1:77496522-77496541 None:intergenic 35.0%
AGAAAGAGCCGTCAATAAAA+AGG - chr1_1:77496616-77496635 Msa0045560:CDS 35.0%
! CTATCCTGCCTTTTTATTGA+CGG + chr1_1:77496627-77496646 None:intergenic 35.0%
AACATCAATCTTGGGTAACT+CGG + chr1_1:77496667-77496686 None:intergenic 35.0%
ACTGACTGAACATCAATCTT+GGG + chr1_1:77496675-77496694 None:intergenic 35.0%
TGTTAAAAGAGGTGAAACAG+GGG + chr1_1:77496733-77496752 None:intergenic 35.0%
GATGTTAAAAGAGGTGAAAC+AGG + chr1_1:77496735-77496754 None:intergenic 35.0%
GTCTGCTAAATGTTTGTGAA+TGG + chr1_1:77496779-77496798 None:intergenic 35.0%
GGAGCTGAAAAATGGAAGAA+AGG + chr1_1:77491024-77491043 None:intergenic 40.0%
!! GTGCTGTGAAAGTACTATGA+AGG + chr1_1:77491071-77491090 None:intergenic 40.0%
! ATCGAAGTTTTCGGTTAGGA+AGG + chr1_1:77491122-77491141 None:intergenic 40.0%
ATGGTTTCCAGAGGTCTATT+CGG - chr1_1:77491361-77491380 Msa0045560:CDS 40.0%
CCATAAGAAACCAGTCAAAC+CGG + chr1_1:77491588-77491607 None:intergenic 40.0%
!! GTTTGACTGGTTTCTTATGG+TGG - chr1_1:77491588-77491607 Msa0045560:CDS 40.0%
TAAAGTTATTCGCGTTCCTC+AGG - chr1_1:77491672-77491691 Msa0045560:CDS 40.0%
AGGAGCAGGATATGTTTCAT+AGG - chr1_1:77491692-77491711 Msa0045560:CDS 40.0%
CAGTTAGGTTTAGTGTTTCC+TGG - chr1_1:77492216-77492235 Msa0045560:CDS 40.0%
TTAGGTTTAGTGTTTCCTGG+AGG - chr1_1:77492219-77492238 Msa0045560:CDS 40.0%
TGGAGGATTGAGGTTTCATT+GGG - chr1_1:77492236-77492255 Msa0045560:CDS 40.0%
ATTGGGGTTATGTCAAAGGA+AGG - chr1_1:77492253-77492272 Msa0045560:CDS 40.0%
TTGGGGTTATGTCAAAGGAA+GGG - chr1_1:77492254-77492273 Msa0045560:CDS 40.0%
TGTGATCAATCAAGGACCAT+TGG - chr1_1:77492339-77492358 Msa0045560:CDS 40.0%
AAGGACCATTGGATCAACTA+GGG - chr1_1:77492350-77492369 Msa0045560:CDS 40.0%
!! AGGAGTGCTAAATATTACGG+AGG - chr1_1:77492492-77492511 Msa0045560:intron 40.0%
TCCTCACGAATTTCACAAAC+GGG - chr1_1:77492519-77492538 Msa0045560:intron 40.0%
ATAGTTACTTCCCACTTTGG+TGG - chr1_1:77492573-77492592 Msa0045560:CDS 40.0%
TCCATGATTTCCACCAAAGT+GGG + chr1_1:77492586-77492605 None:intergenic 40.0%
ACTTTGGTGGAAATCATGGA+GGG - chr1_1:77492586-77492605 Msa0045560:CDS 40.0%
TAACGTGGTTTGACCTACAA+CGG - chr1_1:77492938-77492957 Msa0045560:CDS 40.0%
CTGCAAAAGAAACAACAGCA+AGG + chr1_1:77493118-77493137 None:intergenic 40.0%
ACCATTGTTTATATCGCTGG+TGG - chr1_1:77493147-77493166 Msa0045560:CDS 40.0%
ACCACCAGCGATATAAACAA+TGG + chr1_1:77493151-77493170 None:intergenic 40.0%
!! GTTTTTGTTGCTGGTTGGAT+TGG - chr1_1:77493171-77493190 Msa0045560:CDS 40.0%
! GCATTGATAACATTGGCTAC+AGG - chr1_1:77493623-77493642 Msa0045560:intron 40.0%
TATTCTCTGCAAGCCTATGA+AGG + chr1_1:77493688-77493707 None:intergenic 40.0%
AATAACCTGTTCAGCAATGC+TGG + chr1_1:77493735-77493754 None:intergenic 40.0%
! AGGGTCTTACATTTTGTGAC+TGG - chr1_1:77493959-77493978 Msa0045560:intron 40.0%
! GGGTCTTACATTTTGTGACT+GGG - chr1_1:77493960-77493979 Msa0045560:intron 40.0%
! TTTTGTGACTGGGCATCTAA+AGG - chr1_1:77493970-77493989 Msa0045560:intron 40.0%
TTTGTGACTGGGCATCTAAA+GGG - chr1_1:77493971-77493990 Msa0045560:intron 40.0%
GGAAATAGAAATGCTGGACA+TGG - chr1_1:77494053-77494072 Msa0045560:intron 40.0%
ACATGTCATGGGTGGTAAAA+AGG + chr1_1:77494249-77494268 None:intergenic 40.0%
TACCACCCATGACATGTATA+TGG - chr1_1:77494252-77494271 Msa0045560:intron 40.0%
AGGTTTACTCTATGGTTGGA+AGG - chr1_1:77494482-77494501 Msa0045560:CDS 40.0%
TGTATAATTTCTTGCGACGC+AGG - chr1_1:77494611-77494630 Msa0045560:CDS 40.0%
CTGCAAGCTACTCTTAGATA+TGG - chr1_1:77494705-77494724 Msa0045560:intron 40.0%
!! CTTGGCCTTGGATTTACATA+TGG - chr1_1:77494753-77494772 Msa0045560:intron 40.0%
CAAGCCCATATGTAAATCCA+AGG + chr1_1:77494761-77494780 None:intergenic 40.0%
GTTCTTGTGCATTACAACTC+TGG - chr1_1:77494787-77494806 Msa0045560:CDS 40.0%
GGAAGGTTCTTGGTTATACA+TGG - chr1_1:77494813-77494832 Msa0045560:CDS 40.0%
!! CTGTTTGCTGTCATTCTAAG+TGG - chr1_1:77494867-77494886 Msa0045560:CDS 40.0%
GACTATTCGAGATGATAAGC+CGG - chr1_1:77495031-77495050 Msa0045560:CDS 40.0%
CCACTTAAGATAGGGATTTC+AGG + chr1_1:77495150-77495169 None:intergenic 40.0%
CCTGAAATCCCTATCTTAAG+TGG - chr1_1:77495147-77495166 Msa0045560:intron 40.0%
AGTTCCTGCTAAGAAAACTG+TGG - chr1_1:77495182-77495201 Msa0045560:intron 40.0%
AAGAAAACTGTGGCACTTGT+TGG - chr1_1:77495192-77495211 Msa0045560:intron 40.0%
GTATTATTCCACTCATGGAG+CGG - chr1_1:77495238-77495257 Msa0045560:intron 40.0%
CGGTTCTATGATCCAACATT+AGG - chr1_1:77495258-77495277 Msa0045560:intron 40.0%
GCATGAATATGCACTGTGAA+GGG + chr1_1:77495295-77495314 None:intergenic 40.0%
AGCATGAATATGCACTGTGA+AGG + chr1_1:77495296-77495315 None:intergenic 40.0%
! CTTCTCCTGAAAGCATAGAT+TGG + chr1_1:77495366-77495385 None:intergenic 40.0%
! ATTTGAAACTGGAATGGCTG+AGG - chr1_1:77495469-77495488 Msa0045560:intron 40.0%
ATACTCAAACTGAGCAAAGC+AGG + chr1_1:77495522-77495541 None:intergenic 40.0%
AGACAACATTGCATATGGGA+GGG - chr1_1:77495545-77495564 Msa0045560:intron 40.0%
TTCTGTCTTTCAGATTGGCA+GGG - chr1_1:77495742-77495761 Msa0045560:intron 40.0%
! TACTGGAGGACTTGATTTTG+AGG - chr1_1:77495856-77495875 Msa0045560:intron 40.0%
!!! GACTTGATTTTGAGGCTGAA+AGG - chr1_1:77495864-77495883 Msa0045560:intron 40.0%
!! GGAAGGTCAACTTGTTGAAA+TGG - chr1_1:77495991-77496010 Msa0045560:intron 40.0%
TCACGATGAATTATTGTCCC+TGG - chr1_1:77496018-77496037 Msa0045560:intron 40.0%
CACGATGAATTATTGTCCCT+GGG - chr1_1:77496019-77496038 Msa0045560:intron 40.0%
! AGACCTCTTTGGAAGTTTAG+TGG + chr1_1:77496080-77496099 None:intergenic 40.0%
CATGCAGTATTAGACCTCTT+TGG + chr1_1:77496091-77496110 None:intergenic 40.0%
!! TCGCGTTCTAAACAGTTTTC+GGG - chr1_1:77496309-77496328 Msa0045560:intron 40.0%
! TTCATCATTCTAGGGGATGA+TGG + chr1_1:77496462-77496481 None:intergenic 40.0%
AGGTGACTTCATCATTCTAG+GGG + chr1_1:77496469-77496488 None:intergenic 40.0%
GAAGGTGACTTCATCATTCT+AGG + chr1_1:77496471-77496490 None:intergenic 40.0%
! GCAGAAACTCTTTGAAGAGA+AGG + chr1_1:77496489-77496508 None:intergenic 40.0%
! TTTTCCATCATCTTCTCAGG+TGG + chr1_1:77496573-77496592 None:intergenic 40.0%
! CCATTTTCCATCATCTTCTC+AGG + chr1_1:77496576-77496595 None:intergenic 40.0%
!! CCTGAGAAGATGATGGAAAA+TGG - chr1_1:77496573-77496592 Msa0045560:CDS 40.0%
GATGGAAAATGGTCAGTCTT+TGG - chr1_1:77496584-77496603 Msa0045560:CDS 40.0%
ACATCAATCTTGGGTAACTC+GGG + chr1_1:77496666-77496685 None:intergenic 40.0%
! CACTGACTGAACATCAATCT+TGG + chr1_1:77496676-77496695 None:intergenic 40.0%
GTGCATCGTCAAACATCAAA+TGG - chr1_1:77496693-77496712 Msa0045560:CDS 40.0%
!!! GAATGGGAGCGTTCATTTTT+AGG + chr1_1:77496762-77496781 None:intergenic 40.0%
TGAACGAAACAAAGGATGCA+CGG - chr1_1:77496832-77496851 Msa0045560:exon 40.0%
! TATGCTGTGTTAGGAAGCAT+AGG - chr1_1:77496912-77496931 Msa0045560:five_prime_UTR 40.0%
CCGATAACATAAGCAAGAAG+GGG + chr1_1:77496963-77496982 None:intergenic 40.0%
CCCCTTCTTGCTTATGTTAT+CGG - chr1_1:77496960-77496979 Msa0045560:five_prime_UTR 40.0%
GCCGATAACATAAGCAAGAA+GGG + chr1_1:77496964-77496983 None:intergenic 40.0%
TGTTTGATCATTGCCTGCAT+GGG - chr1_1:77497050-77497069 Msa0045560:five_prime_UTR 40.0%
AGAAAATGACCGAAAGAGTC+CGG - chr1_1:77497129-77497148 Msa0045560:five_prime_UTR 40.0%
AAACACAGCACAACACAGCA+CGG + chr1_1:77491045-77491064 None:intergenic 45.0%
!! TTTGAATTCCGGTGCTGACT+AGG - chr1_1:77491328-77491347 Msa0045560:CDS 45.0%
TGGTTTCCAGAGGTCTATTC+GGG - chr1_1:77491362-77491381 Msa0045560:CDS 45.0%
ACCTCGGAAACAGGTGTTAA+CGG + chr1_1:77491409-77491428 None:intergenic 45.0%
AACACCTGTTTCCGAGGTTT+CGG - chr1_1:77491411-77491430 Msa0045560:CDS 45.0%
CACGCAAATAACCGAGAGAA+AGG + chr1_1:77491559-77491578 None:intergenic 45.0%
!! CCGGTTTGACTGGTTTCTTA+TGG - chr1_1:77491585-77491604 Msa0045560:CDS 45.0%
!! GACTGGTTTCTTATGGTGGT+TGG - chr1_1:77491592-77491611 Msa0045560:CDS 45.0%
TGAAACATATCCTGCTCCTG+AGG + chr1_1:77491691-77491710 None:intergenic 45.0%
AGCGTGAGAATCTAGAGAGA+AGG - chr1_1:77492028-77492047 Msa0045560:intron 45.0%
! GCAAGCATTGCAAAGCAGTT+AGG - chr1_1:77492201-77492220 Msa0045560:CDS 45.0%
TAGTGTTTCCTGGAGGATTG+AGG - chr1_1:77492226-77492245 Msa0045560:CDS 45.0%
CAATGAAACCTCAATCCTCC+AGG + chr1_1:77492237-77492256 None:intergenic 45.0%
CTGGAGGATTGAGGTTTCAT+TGG - chr1_1:77492235-77492254 Msa0045560:CDS 45.0%
GGAGGATTGAGGTTTCATTG+GGG - chr1_1:77492237-77492256 Msa0045560:CDS 45.0%
CAAGGACCATTGGATCAACT+AGG - chr1_1:77492349-77492368 Msa0045560:CDS 45.0%
ACCATTGGATCAACTAGGGT+GGG - chr1_1:77492354-77492373 Msa0045560:CDS 45.0%
GCACTCCTCTTACGGTATTT+AGG + chr1_1:77492480-77492499 None:intergenic 45.0%
CCTCACGAATTTCACAAACG+GGG - chr1_1:77492520-77492539 Msa0045560:intron 45.0%
TCCCACTTTGGTGGAAATCA+TGG - chr1_1:77492582-77492601 Msa0045560:CDS 45.0%
CTCCATGATTTCCACCAAAG+TGG + chr1_1:77492587-77492606 None:intergenic 45.0%
CACTTTGGTGGAAATCATGG+AGG - chr1_1:77492585-77492604 Msa0045560:CDS 45.0%
CTTTGGTGGAAATCATGGAG+GGG - chr1_1:77492587-77492606 Msa0045560:CDS 45.0%
GGGCAACCAACAAGTATGAT+AGG + chr1_1:77492628-77492647 None:intergenic 45.0%
!! ACAGGCTTTGTTGATGCTAG+TGG - chr1_1:77492809-77492828 Msa0045560:intron 45.0%
!! CAGGCTTTGTTGATGCTAGT+GGG - chr1_1:77492810-77492829 Msa0045560:intron 45.0%
! TAGTGGGTCTTCCATCACAT+TGG - chr1_1:77492826-77492845 Msa0045560:intron 45.0%
! AACCTGGTTCTTGGTTCAAC+TGG - chr1_1:77492980-77492999 Msa0045560:CDS 45.0%
ATCCAGTTGAACCAAGAACC+AGG + chr1_1:77492985-77493004 None:intergenic 45.0%
!! GTGGTGTTTTTGTTGCTGGT+TGG - chr1_1:77493166-77493185 Msa0045560:CDS 45.0%
GTTGGATTCTTACCGGAGAA+CGG - chr1_1:77493286-77493305 Msa0045560:intron 45.0%
GGTCCATTTATTGTTGCTGC+AGG - chr1_1:77493644-77493663 Msa0045560:intron 45.0%
CCTCCTGCAGCAACAATAAA+TGG + chr1_1:77493650-77493669 None:intergenic 45.0%
CCATTTATTGTTGCTGCAGG+AGG - chr1_1:77493647-77493666 Msa0045560:intron 45.0%
CACCATATACATGTCATGGG+TGG + chr1_1:77494257-77494276 None:intergenic 45.0%
! TAGCATAAATGGGAGGGTGT+AGG - chr1_1:77494306-77494325 Msa0045560:intron 45.0%
! AAATGGGAGGGTGTAGGATT+AGG - chr1_1:77494312-77494331 Msa0045560:intron 45.0%
CGCAGGCAGTTTCCTATATA+CGG - chr1_1:77494628-77494647 Msa0045560:CDS 45.0%
TGCAGACAAGGTCCGTATAT+AGG + chr1_1:77494643-77494662 None:intergenic 45.0%
! ATAAGTCTTGTCCAAGGGCT+TGG - chr1_1:77494735-77494754 Msa0045560:intron 45.0%
TGTGCATTACAACTCTGGGT+TGG - chr1_1:77494792-77494811 Msa0045560:CDS 45.0%
! CATTACAACTCTGGGTTGGA+AGG - chr1_1:77494796-77494815 Msa0045560:CDS 45.0%
ATACATGGAAAAGCTCACGG+CGG - chr1_1:77494828-77494847 Msa0045560:CDS 45.0%
GATCAAAAGACGAGGATGAC+CGG + chr1_1:77495053-77495072 None:intergenic 45.0%
! TCCTCGTCTTTTGATCACGA+CGG - chr1_1:77495057-77495076 Msa0045560:intron 45.0%
ATATTTCCTTGCACGGACAC+AGG + chr1_1:77495090-77495109 None:intergenic 45.0%
! AGTGCCACAGTTTTCTTAGC+AGG + chr1_1:77495189-77495208 None:intergenic 45.0%
GAGACAACATTGCATATGGG+AGG - chr1_1:77495544-77495563 Msa0045560:intron 45.0%
CTCTTCAATTTGATCCGCTG+TGG + chr1_1:77495574-77495593 None:intergenic 45.0%
CACAGCGGATCAAATTGAAG+AGG - chr1_1:77495572-77495591 Msa0045560:intron 45.0%
AAAGACAGAAGCCCCAGTTT+GGG + chr1_1:77495732-77495751 None:intergenic 45.0%
CTTCTGTCTTTCAGATTGGC+AGG - chr1_1:77495741-77495760 Msa0045560:intron 45.0%
TCGTCAAGCAGGAGAATTGA+TGG + chr1_1:77495833-77495852 None:intergenic 45.0%
ATCAATTCTCCTGCTTGACG+AGG - chr1_1:77495832-77495851 Msa0045560:intron 45.0%
GATGAATTATTGTCCCTGGG+TGG - chr1_1:77496022-77496041 Msa0045560:intron 45.0%
AGAGCTACTTCGATGTGAAG+AGG - chr1_1:77496054-77496073 Msa0045560:intron 45.0%
AGGCCACTAAACTTCCAAAG+AGG - chr1_1:77496074-77496093 Msa0045560:intron 45.0%
! AAGCAAAGGCAGAAGCATGA+TGG + chr1_1:77496114-77496133 None:intergenic 45.0%
AGAGCCGTCAATAAAAAGGC+AGG - chr1_1:77496620-77496639 Msa0045560:CDS 45.0%
! ATCGAGGTCAACCCTCATTT+TGG - chr1_1:77496856-77496875 Msa0045560:five_prime_UTR 45.0%
!! TCAACCCTCATTTTGGAGAC+TGG - chr1_1:77496863-77496882 Msa0045560:five_prime_UTR 45.0%
TCTGCCAGTCTCCAAAATGA+GGG + chr1_1:77496870-77496889 None:intergenic 45.0%
!!! CAGAGCTTAGTTTTGCTGAG+TGG - chr1_1:77496886-77496905 Msa0045560:five_prime_UTR 45.0%
!! GAGTGGCTTTATGCTGTGTT+AGG - chr1_1:77496903-77496922 Msa0045560:five_prime_UTR 45.0%
! AGCATAGGTGCTGCAATCTT+TGG - chr1_1:77496927-77496946 Msa0045560:five_prime_UTR 45.0%
GGCCGATAACATAAGCAAGA+AGG + chr1_1:77496965-77496984 None:intergenic 45.0%
TCTTGCTTATGTTATCGGCC+TGG - chr1_1:77496965-77496984 Msa0045560:five_prime_UTR 45.0%
GATAGTAAGTTGTCACCACC+AGG + chr1_1:77496986-77497005 None:intergenic 45.0%
! TTGATGACACTCATCACCTG+CGG - chr1_1:77497009-77497028 Msa0045560:five_prime_UTR 45.0%
GTGTTTGATCATTGCCTGCA+TGG - chr1_1:77497049-77497068 Msa0045560:five_prime_UTR 45.0%
CATCATTCTCCGGACTCTTT+CGG + chr1_1:77497141-77497160 None:intergenic 45.0%
CACCTGAGAACATCATTCTC+CGG + chr1_1:77497151-77497170 None:intergenic 45.0%
!!! GAATATTATTATTTTTTAAA+TGG + chr1_1:77493040-77493059 None:intergenic 5.0%
!! AAAAGAAAAAAAAAAATTAT+AGG + chr1_1:77495677-77495696 None:intergenic 5.0%
CACAGCACGGAGCTGAAAAA+TGG + chr1_1:77491032-77491051 None:intergenic 50.0%
!! ATTCCGGTGCTGACTAGGAT+CGG - chr1_1:77491333-77491352 Msa0045560:CDS 50.0%
CTGACTAGGATCGGAGATGA+TGG - chr1_1:77491342-77491361 Msa0045560:CDS 50.0%
! TCGGAGATGATGGTTTCCAG+AGG - chr1_1:77491352-77491371 Msa0045560:CDS 50.0%
TTTCCAGAGGTCTATTCGGG+TGG - chr1_1:77491365-77491384 Msa0045560:CDS 50.0%
GTTAACGGTTGCACATGTGG+TGG + chr1_1:77491394-77491413 None:intergenic 50.0%
GGTGTTAACGGTTGCACATG+TGG + chr1_1:77491397-77491416 None:intergenic 50.0%
ACCGTTAACACCTGTTTCCG+AGG - chr1_1:77491405-77491424 Msa0045560:CDS 50.0%
TCACCTCCGATGTCCATGAA+CGG + chr1_1:77491457-77491476 None:intergenic 50.0%
CAGCTGCTGTTCCTTTCTCT+CGG - chr1_1:77491545-77491564 Msa0045560:CDS 50.0%
! GGTTATTTGCGTGTGCTGAC+CGG - chr1_1:77491566-77491585 Msa0045560:CDS 50.0%
GACCATTGGATCAACTAGGG+TGG - chr1_1:77492353-77492372 Msa0045560:CDS 50.0%
ACCCACCCTAGTTGATCCAA+TGG + chr1_1:77492358-77492377 None:intergenic 50.0%
CCCCGTTTGTGAAATTCGTG+AGG + chr1_1:77492523-77492542 None:intergenic 50.0%
!! GCTGGTGGTGTTTTTGTTGC+TGG - chr1_1:77493162-77493181 Msa0045560:CDS 50.0%
CTGCTTCGGCATATGCATCT+TGG + chr1_1:77493712-77493731 None:intergenic 50.0%
! TTCAGCAATGCTGGCTGCTT+CGG + chr1_1:77493726-77493745 None:intergenic 50.0%
TGGGTGGTAAAAAGGACTGC+TGG + chr1_1:77494241-77494260 None:intergenic 50.0%
TAAATCCAAGGCCAAGCCCT+TGG + chr1_1:77494749-77494768 None:intergenic 50.0%
! ACTCTGGGTTGGAAGGTTCT+TGG - chr1_1:77494803-77494822 Msa0045560:CDS 50.0%
TACATGGAAAAGCTCACGGC+GGG - chr1_1:77494829-77494848 Msa0045560:CDS 50.0%
TCCGTCGTGATCAAAAGACG+AGG + chr1_1:77495061-77495080 None:intergenic 50.0%
! GTGGCACTTGTTGGCAGAAA+CGG - chr1_1:77495201-77495220 Msa0045560:intron 50.0%
CTTGTTGGCAGAAACGGTTC+TGG - chr1_1:77495207-77495226 Msa0045560:intron 50.0%
TCATAGAACCGCTCCATGAG+TGG + chr1_1:77495249-77495268 None:intergenic 50.0%
GAATGGCTGAGGAGCCAAAT+AGG - chr1_1:77495480-77495499 Msa0045560:intron 50.0%
ACTGAGCAAAGCAGGTTCCT+GGG + chr1_1:77495514-77495533 None:intergenic 50.0%
AACTGAGCAAAGCAGGTTCC+TGG + chr1_1:77495515-77495534 None:intergenic 50.0%
ATATGGGAGGGATACCACAG+CGG - chr1_1:77495557-77495576 Msa0045560:intron 50.0%
TCTCACTCCACTTCCCAAAC+TGG - chr1_1:77495716-77495735 Msa0045560:intron 50.0%
CTCACTCCACTTCCCAAACT+GGG - chr1_1:77495717-77495736 Msa0045560:intron 50.0%
TCACTCCACTTCCCAAACTG+GGG - chr1_1:77495718-77495737 Msa0045560:intron 50.0%
GAAAGACAGAAGCCCCAGTT+TGG + chr1_1:77495733-77495752 None:intergenic 50.0%
GGGGCTTCTGTCTTTCAGAT+TGG - chr1_1:77495737-77495756 Msa0045560:intron 50.0%
TGAGGCTGAAAGGTCTGTTC+AGG - chr1_1:77495874-77495893 Msa0045560:intron 50.0%
! GCTCTGGATCTCCTTATGCT+GGG - chr1_1:77495899-77495918 Msa0045560:intron 50.0%
TTGTTGAGCGTCCCAGCATA+AGG + chr1_1:77495913-77495932 None:intergenic 50.0%
CTCTGCATATAAGCCACCCA+GGG + chr1_1:77496038-77496057 None:intergenic 50.0%
GTCTTCTTGTAGTTGCGAGC+AGG + chr1_1:77496387-77496406 None:intergenic 50.0%
GCTGTATTTCGGCCTTCAGA+TGG - chr1_1:77496507-77496526 Msa0045560:CDS 50.0%
CCATCATCTTCTCAGGTGGT+GGG + chr1_1:77496569-77496588 None:intergenic 50.0%
TCCATCATCTTCTCAGGTGG+TGG + chr1_1:77496570-77496589 None:intergenic 50.0%
GAGGTGAAACAGGGGATTCT+GGG + chr1_1:77496725-77496744 None:intergenic 50.0%
AGAGGTGAAACAGGGGATTC+TGG + chr1_1:77496726-77496745 None:intergenic 50.0%
CTCTGCCAGTCTCCAAAATG+AGG + chr1_1:77496871-77496890 None:intergenic 50.0%
TGCTTATGTTATCGGCCTGG+TGG - chr1_1:77496968-77496987 Msa0045560:five_prime_UTR 50.0%
TGATGACACTCATCACCTGC+GGG - chr1_1:77497010-77497029 Msa0045560:five_prime_UTR 50.0%
AACTGTCACGATACCCATGC+AGG + chr1_1:77497066-77497085 None:intergenic 50.0%
GTCCGGAGAATGATGTTCTC+AGG - chr1_1:77497146-77497165 Msa0045560:five_prime_UTR 50.0%
!! CATCGTTTTGAACGCCACCG+TGG + chr1_1:77491240-77491259 None:intergenic 55.0%
TCTCCGATCCTAGTCAGCAC+CGG + chr1_1:77491339-77491358 None:intergenic 55.0%
TGACCACCCGAATAGACCTC+TGG + chr1_1:77491371-77491390 None:intergenic 55.0%
!! ATGAACGGTGACGGAGACTC+CGG + chr1_1:77491442-77491461 None:intergenic 55.0%
CCGATGTCCATGAACGGTGA+CGG + chr1_1:77491451-77491470 None:intergenic 55.0%
CCGTCACCGTTCATGGACAT+CGG - chr1_1:77491448-77491467 Msa0045560:CDS 55.0%
TCACCGTTCATGGACATCGG+AGG - chr1_1:77491451-77491470 Msa0045560:CDS 55.0%
GGACATCGGAGGTGAGACTT+CGG - chr1_1:77491462-77491481 Msa0045560:CDS 55.0%
AATGGAAGCGGAGGAGGAGA+TGG - chr1_1:77491495-77491514 Msa0045560:CDS 55.0%
GGAGGAGGAGATGGAAGAGA+TGG - chr1_1:77491504-77491523 Msa0045560:CDS 55.0%
GGAGGAGATGGAAGAGATGG+AGG - chr1_1:77491507-77491526 Msa0045560:CDS 55.0%
GAGAAAGGAACAGCAGCTGG+CGG + chr1_1:77491544-77491563 None:intergenic 55.0%
CGAGAGAAAGGAACAGCAGC+TGG + chr1_1:77491547-77491566 None:intergenic 55.0%
!! GGTGGTTGGTTCTATCGCTG+CGG - chr1_1:77491606-77491625 Msa0045560:CDS 55.0%
TATTCGCGTTCCTCAGGAGC+AGG - chr1_1:77491678-77491697 Msa0045560:CDS 55.0%
AGCAGCCAGCATTGCTGAAC+AGG - chr1_1:77493727-77493746 Msa0045560:intron 55.0%
ACATGGAAAAGCTCACGGCG+GGG - chr1_1:77494830-77494849 Msa0045560:CDS 55.0%
GCTGAGGAGCCAAATAGGAC+TGG - chr1_1:77495485-77495504 Msa0045560:intron 55.0%
CCTGGGTGACCAGTCCTATT+TGG + chr1_1:77495497-77495516 None:intergenic 55.0%
!! CCAAATAGGACTGGTCACCC+AGG - chr1_1:77495494-77495513 Msa0045560:intron 55.0%
AGAAGCCCCAGTTTGGGAAG+TGG + chr1_1:77495726-77495745 None:intergenic 55.0%
GTCTTTCAGATTGGCAGGGC+TGG - chr1_1:77495746-77495765 Msa0045560:intron 55.0%
CTCCTGCTTGACGAGGTTAC+TGG - chr1_1:77495839-77495858 Msa0045560:intron 55.0%
CTCCAGTAACCTCGTCAAGC+AGG + chr1_1:77495844-77495863 None:intergenic 55.0%
CTGCTTGACGAGGTTACTGG+AGG - chr1_1:77495842-77495861 Msa0045560:intron 55.0%
GGCTGAAAGGTCTGTTCAGG+AGG - chr1_1:77495877-77495896 Msa0045560:intron 55.0%
AAGGTCTGTTCAGGAGGCTC+TGG - chr1_1:77495883-77495902 Msa0045560:intron 55.0%
!! GGCTCTGGATCTCCTTATGC+TGG - chr1_1:77495898-77495917 Msa0045560:intron 55.0%
GCTCTGCATATAAGCCACCC+AGG + chr1_1:77496039-77496058 None:intergenic 55.0%
CCCACCACCTGAGAAGATGA+TGG - chr1_1:77496566-77496585 Msa0045560:CDS 55.0%
ACAAAGGATGCACGGCATCG+AGG - chr1_1:77496840-77496859 Msa0045560:exon 55.0%
GATGACACTCATCACCTGCG+GGG - chr1_1:77497011-77497030 Msa0045560:five_prime_UTR 55.0%
ATGACACTCATCACCTGCGG+GGG - chr1_1:77497012-77497031 Msa0045560:five_prime_UTR 55.0%
!! CGTTTTGAACGCCACCGTGG+CGG + chr1_1:77491237-77491256 None:intergenic 60.0%
GGCTCCGAAACCTCGGAAAC+AGG + chr1_1:77491418-77491437 None:intergenic 60.0%
TTCCGAGGTTTCGGAGCCAC+CGG - chr1_1:77491420-77491439 Msa0045560:CDS 60.0%
GGAGTCTCCGTCACCGTTCA+TGG - chr1_1:77491441-77491460 Msa0045560:CDS 60.0%
GACTTCGGCGTCGCAGCAAA+TGG - chr1_1:77491477-77491496 Msa0045560:CDS 60.0%
GGCGTCGCAGCAAATGGAAG+CGG - chr1_1:77491483-77491502 Msa0045560:CDS 60.0%
GTCGCAGCAAATGGAAGCGG+AGG - chr1_1:77491486-77491505 Msa0045560:CDS 60.0%
GCAGCAAATGGAAGCGGAGG+AGG - chr1_1:77491489-77491508 Msa0045560:CDS 60.0%
AAAGGAACAGCAGCTGGCGG+CGG + chr1_1:77491541-77491560 None:intergenic 60.0%
!! CGTGTGCTGACCGGTTTGAC+TGG - chr1_1:77491575-77491594 Msa0045560:CDS 60.0%
!! GGTTGGTTCTATCGCTGCGG+CGG - chr1_1:77491609-77491628 Msa0045560:CDS 60.0%
CTTGTCCAAGGGCTTGGCCT+TGG - chr1_1:77494741-77494760 Msa0045560:intron 60.0%
AGTGCTCCTGTGTCCGTGCA+AGG - chr1_1:77495081-77495100 Msa0045560:intron 60.0%
!! GGTGGTGGGCTCTGTACTTG+TGG + chr1_1:77496555-77496574 None:intergenic 60.0%
TGACACTCATCACCTGCGGG+GGG - chr1_1:77497013-77497032 Msa0045560:five_prime_UTR 60.0%
ACTTGTCTATCTCCCCCCGC+AGG + chr1_1:77497028-77497047 None:intergenic 60.0%
TGCGGGGGGAGATAGACAAG+TGG - chr1_1:77497027-77497046 Msa0045560:five_prime_UTR 60.0%
CTCCGGTGGCTCCGAAACCT+CGG + chr1_1:77491425-77491444 None:intergenic 65.0%
!! AACGGTGACGGAGACTCCGG+TGG + chr1_1:77491439-77491458 None:intergenic 65.0%
TCTATCGCTGCGGCGGCTCA+TGG - chr1_1:77491616-77491635 Msa0045560:CDS 65.0%
GACGGCTGTCTGCCGTTCTC+CGG + chr1_1:77493301-77493320 None:intergenic 65.0%
! TGGCGGCGCGTGGGTTGACT+CGG + chr1_1:77491220-77491239 None:intergenic 70.0%
AGTCAACCCACGCGCCGCCA+CGG - chr1_1:77491220-77491239 Msa0045560:CDS 70.0%
! CAACCCACGCGCCGCCACGG+TGG - chr1_1:77491223-77491242 Msa0045560:CDS 80.0%
! ACGCCACCGTGGCGGCGCGT+GGG + chr1_1:77491229-77491248 None:intergenic 80.0%
! AACGCCACCGTGGCGGCGCG+TGG + chr1_1:77491230-77491249 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 77490990 77497217 77490990 ID=Msa0045560;Name=Msa0045560
chr1_1 mRNA 77490990 77497217 77490990 ID=Msa0045560-mRNA-1;Parent=Msa0045560;Name=Msa0045560-mRNA-1;_AED=0.23;_eAED=0.23;_QI=368|1|0.88|1|0.87|1|9|0|922
chr1_1 exon 77490990 77491827 77490990 ID=Msa0045560-mRNA-1:exon:26544;Parent=Msa0045560-mRNA-1
chr1_1 exon 77492112 77492452 77492112 ID=Msa0045560-mRNA-1:exon:26543;Parent=Msa0045560-mRNA-1
chr1_1 exon 77492551 77492771 77492551 ID=Msa0045560-mRNA-1:exon:26542;Parent=Msa0045560-mRNA-1
chr1_1 exon 77492928 77493238 77492928 ID=Msa0045560-mRNA-1:exon:26541;Parent=Msa0045560-mRNA-1
chr1_1 exon 77493315 77493574 77493315 ID=Msa0045560-mRNA-1:exon:26540;Parent=Msa0045560-mRNA-1
chr1_1 exon 77494459 77494659 77494459 ID=Msa0045560-mRNA-1:exon:26539;Parent=Msa0045560-mRNA-1
chr1_1 exon 77494755 77494930 77494755 ID=Msa0045560-mRNA-1:exon:26538;Parent=Msa0045560-mRNA-1
chr1_1 exon 77495015 77495069 77495015 ID=Msa0045560-mRNA-1:exon:26537;Parent=Msa0045560-mRNA-1
chr1_1 exon 77496484 77497217 77496484 ID=Msa0045560-mRNA-1:exon:26536;Parent=Msa0045560-mRNA-1
chr1_1 five_prime_UTR 77496850 77497217 77496850 ID=Msa0045560-mRNA-1:five_prime_utr;Parent=Msa0045560-mRNA-1
chr1_1 CDS 77496484 77496849 77496484 ID=Msa0045560-mRNA-1:cds;Parent=Msa0045560-mRNA-1
chr1_1 CDS 77495015 77495069 77495015 ID=Msa0045560-mRNA-1:cds;Parent=Msa0045560-mRNA-1
chr1_1 CDS 77494755 77494930 77494755 ID=Msa0045560-mRNA-1:cds;Parent=Msa0045560-mRNA-1
chr1_1 CDS 77494459 77494659 77494459 ID=Msa0045560-mRNA-1:cds;Parent=Msa0045560-mRNA-1
chr1_1 CDS 77493315 77493574 77493315 ID=Msa0045560-mRNA-1:cds;Parent=Msa0045560-mRNA-1
chr1_1 CDS 77492928 77493238 77492928 ID=Msa0045560-mRNA-1:cds;Parent=Msa0045560-mRNA-1
chr1_1 CDS 77492551 77492771 77492551 ID=Msa0045560-mRNA-1:cds;Parent=Msa0045560-mRNA-1
chr1_1 CDS 77492112 77492452 77492112 ID=Msa0045560-mRNA-1:cds;Parent=Msa0045560-mRNA-1
chr1_1 CDS 77490990 77491827 77490990 ID=Msa0045560-mRNA-1:cds;Parent=Msa0045560-mRNA-1
Gene Sequence

>Msa0045560

ATGATGGTTTCCAGAGGTCTATTCGGGTGGTCACCACCACATGTGCAACCGTTAACACCTGTTTCCGAGGTTTCGGAGCCACCGGAGTCTCCGTCACCGTTCATGGACATCGGAGGTGAGACTTCGGCGTCGCAGCAAATGGAAGCGGAGGAGGAGATGGAAGAGATGGAGGATATTGAACCGCCGCCAGCTGCTGTTCCTTTCTCTCGGTTATTTGCGTGTGCTGACCGGTTTGACTGGTTTCTTATGGTGGTTGGTTCTATCGCTGCGGCGGCTCATGGAACTGCGCTTGTTGTTTACTTGCATTACTTTGCTAAAGTTATTCGCGTTCCTCAGGAGCAGGATATGTTTCATAGGTTCAAGGAGCTTGCTTTGACCATTGTTTATATCGCTGGTGGTGTTTTTGTTGCTGGTTGGATTGAGGTTTCATGTTGGATTCTTACCGGAGAACGGCAGACAGCCGTCATCAGATCAAAATATGTTCGAGTATTACTTAACCAAGATATGAGTTTCTTTGATACTTATGGAAATAACGGAGACATTGTGAGTCAAGTATTGAGTGATGTACTGCTCATTCAGTCTGCTCTCAGTGAAAAAGTTGGGAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTTATTGCTTTTATCAATTGTTGGCAGATAGCATTGATAACATTGGCTACAGGTCCATTTATTGTTGCTGCAGGAGGAATATCAAATATATTCCTTCATAGGCTTGCAGAGAATATCCAAGATGCATATGCCGAAGCAGCCAGCATTGCTGAACAGGCAGTTTCCTATATACGGACCTTGTCTGCATTTACAAATGAAACATTGGCGAAATATTCATATGCAACGTCACTGCAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTCCAAGGGCTTGGCCTTGGATTTACATATGGGCTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGGTTCTTGGTTATACATGGAAAAGCTCACGGCGGGGAAATTATAACAGCTCTGTTTGCTGTCATTCTAAGTGGCTTGGGATTAAACCAAGCGGCGACAAATTTCTACTCATTTGATCAAGGGCGAATAGCTGCCTATAGACTATTCGAGATGATAAGCCGGTCATCCTCGTCTTTTGATCACGACGGAAGTGCTCCTGTGTCCGTGCAAGGAAATATAGAGTTTCGGAATGTTTACTTCAGTTATCTTTCACGCCCTGAAATCCCTATCTTAAGTGGGTTTTATCTCACAGTTCCTGCTAAGAAAACTGTGGCACTTGTTGGCAGAAACGGTTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGGTTCTATGATCCAACATTAGGAGAAGTTCTTTTAGATGGTGAAAACATCAAGAATTTGAAACTGGAATGGCTGAGGAGCCAAATAGGACTGGTCACCCAGGAACCTGCTTTGCTCAGTTTGAGTATAAGAGACAACATTGCATATGGGAGGGATACCACAGCGGATCAAATTGAAGAGGCTGCTAAAATAGCTCACGCACATACCTTTATCAGTTCATTAGATAAAGGTTATGATACACAGATTGGCAGGGCTGGTTTAGCTTTGACAGAAGAACAGAAAATAAAGCTTTCTATTGCAAGAGCTGTGCTTCTAAATCCATCAATTCTCCTGCTTGACGAGGTTACTGGAGGACTTGATTTTGAGGCTGAAAGGTCTGTTCAGGAGGCTCTGGATCTCCTTATGCTGGGACGCTCAACAATAATAATTGCTCGAAGGCTTAGTCTTATAAAGAATGCCGATTATATAGCAGTTATGGAGGAAGGTCAACTTGTTGAAATGGGTACTCACGATGAATTATTGTCCCTGGGTGGCTTATATGCAGAGCTACTTCGATGTGAAGAGGCCACTAAACTTCCAAAGAGGATGCCTGCTCGCAACTACAAGAAGACTGCAGCTTTCCAAATTGAGAAAGATTCTTCAGAGAGTCATAGCTGCAAAGAACCATCATCCCCTAGAATGATGAAGTCACCTTCTCTTCAAAGAGTTTCTGCTGTATTTCGGCCTTCAGATGGCTTCTTTAACTTACATGAATCACCACAAGTACAGAGCCCACCACCTGAGAAGATGATGGAAAATGGTCAGTCTTTGGATTCAACTGAGAAAGAGCCGTCAATAAAAAGGCAGGATAGCTTTGAAATGAGACTACCCGAGTTACCCAAGATTGATGTTCAGTCAGTGCATCGTCAAACATCAAATGGTTCTGACCCAGAATCCCCTGTTTCACCTCTTTTAACATCTGATCCTAAAAATGAACGCTCCCATTCACAAACATTTAGCAGACCAGATAGTTATTCTGATGAATTTTCAGTGAAAATGAACGAAACAAAGGATGCACGGCATCGAGGTCAACCCTCATTTTGGAGACTGGCAGAGCTTAGTTTTGCTGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGTGCTGCAATCTTTGGTGCGTTCAATCCCCTTCTTGCTTATGTTATCGGCCTGGTGGTGACAACTTACTATCGAATTGATGACACTCATCACCTGCGGGGGGAGATAGACAAGTGGTGTTTGATCATTGCCTGCATGGGTATCGTGACAGTTGTTGCCAACTTTTTACAGCATTTCTACTTTGGTATAATGGGGGAGAAAATGACCGAAAGAGTCCGGAGAATGATGTTCTCAGGTGTGCATGTTTGTTTTTTAGAATCTTCAGTAACCACCCTGATATATTAA
Protein sequence

>Msa0045560

MMVSRGLFGWSPPHVQPLTPVSEVSEPPESPSPFMDIGGETSASQQMEAEEEMEEMEDIEPPPAAVPFSRLFACADRFDWFLMVVGSIAAAAHGTALVVYLHYFAKVIRVPQEQDMFHRFKELALTIVYIAGGVFVAGWIEVSCWILTGERQTAVIRSKYVRVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIAFINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLSAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSFDHDGSAPVSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDTTADQIEEAAKIAHAHTFISSLDKGYDTQIGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIKNADYIAVMEEGQLVEMGTHDELLSLGGLYAELLRCEEATKLPKRMPARNYKKTAAFQIEKDSSESHSCKEPSSPRMMKSPSLQRVSAVFRPSDGFFNLHESPQVQSPPPEKMMENGQSLDSTEKEPSIKRQDSFEMRLPELPKIDVQSVHRQTSNGSDPESPVSPLLTSDPKNERSHSQTFSRPDSYSDEFSVKMNETKDARHRGQPSFWRLAELSFAEWLYAVLGSIGAAIFGAFNPLLAYVIGLVVTTYYRIDDTHHLRGEIDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSGVHVCFLESSVTTLIY*