AlfalfaGEDB | Msa0382690

M. sativa cultivar zhongmu-4 / Msa0382690

KEGG: K10999
GO: GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009628 GO:0009651 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042538 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098791 GO:1901576 GO:1903047
PFAM: PF14569.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382690	XP_003603419.1	97.286	479	9	2	1	479	1	475	0.0	959

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382690	sp\|O48946\|CESA1_ARATH	79.531	469	86	5	1	468	1	460	0.0	736

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382690	G7JB42	97.286	479	9	2	1	479	1	475	0.0	959

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0045560	Msa0382690	0.817730	2.833638e-52	-8.615850e-47
Msa0198210	Msa0382690	0.841883	3.627078e-58	-8.615850e-47
Msa0370460	Msa0382690	0.855780	5.015163e-62	-8.615850e-47
Msa0374190	Msa0382690	0.828252	9.970561e-55	-8.615850e-47
Msa0378410	Msa0382690	0.845539	3.813292e-59	-8.615850e-47
Msa0382690	Msa0400420	0.821162	4.674617e-53	-8.615850e-47
Msa0382690	Msa0417950	0.845059	5.141985e-59	-8.615850e-47
Msa0382690	Msa0429140	0.809769	1.606300e-50	-8.615850e-47
Msa0382690	Msa0447440	0.890539	8.989292e-74	-8.615850e-47
Msa0382690	Msa0469610	0.854137	1.503446e-61	-8.615850e-47
Msa0382690	Msa0480420	0.895427	9.681773e-76	-8.615850e-47
Msa0382690	Msa0494950	0.844004	9.888826e-59	-8.615850e-47
Msa0382690	Msa0523650	0.814377	1.588844e-51	-8.615850e-47
Msa0382690	Msa0524350	0.817325	3.497276e-52	-8.615850e-47
Msa0382690	Msa0524840	0.899548	1.776795e-77	-8.615850e-47
Msa0382690	Msa0524950	0.895358	1.033994e-75	-8.615850e-47
Msa0382690	Msa0568760	0.843408	1.427327e-58	-8.615850e-47
Msa0382690	Msa0619010	0.866345	3.051336e-65	-8.615850e-47
Msa0382690	Msa0659080	0.897667	1.126218e-76	-8.615850e-47
Msa0382690	Msa0704590	0.825476	4.591882e-54	-8.615850e-47
Msa0382690	Msa0705570	0.882260	1.209593e-70	-8.615850e-47
Msa0382690	Msa1377960	0.815070	1.115920e-51	-8.615850e-47
Msa0382690	Msa1381100	0.806602	7.597496e-50	-8.615850e-47
Msa0382690	Msa1404220	0.802963	4.371492e-49	-8.615850e-47
Msa0382690	Msa1427050	0.824692	7.031593e-54	-8.615850e-47
Msa0269800	Msa0382690	0.818388	2.012394e-52	-8.615850e-47
Msa0307530	Msa0382690	0.844960	5.470108e-59	-8.615850e-47
Msa0353500	Msa0382690	0.825618	4.248843e-54	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382690	MtrunA17_Chr3g0137951	97.286	479	9	2	1	479	1	475	0.0	959
Msa0382690	MtrunA17_Chr8g0383701	54.678	481	198	7	1	468	1	474	5.90e-170	507
Msa0382690	MtrunA17_Chr3g0088821	55.895	458	181	7	25	468	6	456	8.04e-170	506
Msa0382690	MtrunA17_Chr1g0201731	51.860	484	205	6	1	468	5	476	4.48e-167	500
Msa0382690	MtrunA17_Chr8g0352231	57.424	458	174	7	25	468	6	456	9.48e-164	491
Msa0382690	MtrunA17_Chr4g0073711	55.626	471	171	7	1	468	1	436	3.28e-160	480
Msa0382690	MtrunA17_Chr3g0078671	53.419	468	173	5	1	468	1	423	2.41e-159	478
Msa0382690	MtrunA17_Chr2g0296991	48.387	465	175	8	5	468	7	407	1.68e-145	442
Msa0382690	MtrunA17_Chr7g0267731	51.605	405	139	6	66	468	19	368	2.45e-124	385
Msa0382690	MtrunA17_Chr8g0379241	74.648	213	54	0	256	468	169	381	5.07e-109	345
Msa0382690	MtrunA17_Chr8g0379241	46.296	54	29	0	37	90	6	59	1.69e-12	70.1
Msa0382690	MtrunA17_Chr2g0284211	48.028	431	149	11	40	468	9	366	1.87e-108	344
Msa0382690	MtrunA17_Chr1g0183381	66.667	213	71	0	256	468	96	308	2.84e-99	318
Msa0382690	MtrunA17_Chr8g0364641	60.793	227	89	0	242	468	164	390	3.64e-93	303
Msa0382690	MtrunA17_Chr8g0364641	42.922	219	100	5	1	209	1	204	4.06e-36	142
Msa0382690	MtrunA17_Chr7g0269741	52.743	237	104	3	227	456	256	491	4.49e-72	247
Msa0382690	MtrunA17_Chr1g0165411	49.225	258	117	3	218	464	193	447	3.90e-71	244
Msa0382690	MtrunA17_Chr4g0039801	49.398	249	114	4	227	464	228	475	3.09e-70	242
Msa0382690	MtrunA17_Chr1g0165421	46.538	260	131	2	213	464	202	461	2.57e-69	239
Msa0382690	MtrunA17_Chr2g0297351	49.597	248	113	3	227	464	116	361	1.29e-68	236
Msa0382690	MtrunA17_Chr5g0410641	45.956	272	120	4	203	468	208	458	9.12e-68	235
Msa0382690	MtrunA17_Chr7g0274751	48.193	249	117	4	227	464	51	298	2.54e-67	231
Msa0382690	MtrunA17_Chr3g0094861	60.417	192	69	3	6	194	3	190	1.02e-64	212
Msa0382690	MtrunA17_Chr2g0322341	50.388	129	60	1	313	441	52	176	3.85e-40	148
Msa0382690	MtrunA17_Chr2g0322351	44.578	166	85	2	299	464	37	195	2.86e-39	151
Msa0382690	MtrunA17_Chr2g0322361	45.860	157	79	2	312	468	52	202	1.05e-36	144
Msa0382690	MtrunA17_Chr3g0102541	47.917	144	69	2	299	441	38	176	2.04e-36	142
Msa0382690	MtrunA17_Chr2g0322371	45.223	157	78	2	312	468	47	195	2.45e-36	142
Msa0382690	MtrunA17_Chr3g0102531	44.099	161	84	2	282	441	21	176	2.77e-36	142
Msa0382690	MtrunA17_Chr3g0102551	39.645	169	88	2	282	441	23	186	2.23e-35	140
Msa0382690	MtrunA17_Chr2g0307241	39.375	160	86	4	283	441	19	168	5.26e-32	121
Msa0382690	MtrunA17_Chr3g0095791	38.788	165	92	3	277	441	13	168	5.93e-32	129
Msa0382690	MtrunA17_Chr4g0025201	42.941	170	88	3	299	468	37	197	6.59e-32	129
Msa0382690	MtrunA17_Chr2g0298581	38.994	159	88	3	283	441	19	168	2.37e-30	124
Msa0382690	MtrunA17_Chr2g0307191	38.750	160	87	4	283	441	19	168	2.53e-30	124
Msa0382690	MtrunA17_Chr3g0077511	35.849	159	93	3	283	441	19	168	2.29e-29	122
Msa0382690	MtrunA17_Chr1g0186381	34.404	218	124	6	261	469	4	211	4.85e-29	120
Msa0382690	MtrunA17_Chr4g0046401	37.576	165	90	3	283	441	24	181	3.69e-28	118
Msa0382690	MtrunA17_Chr7g0267741	55.556	63	28	0	32	94	1	63	9.74e-18	77.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382690	AT4G32410.1	79.531	469	86	5	1	468	1	460	0.0	736
Msa0382690	AT2G25540.1	69.703	472	119	5	7	478	1	448	0.0	674
Msa0382690	AT5G05170.1	57.650	451	173	7	25	468	5	444	6.15e-168	501
Msa0382690	AT5G09870.1	54.681	470	190	10	1	468	1	449	9.46e-165	493
Msa0382690	AT5G17420.1	55.437	469	162	8	1	468	1	423	6.04e-164	490
Msa0382690	AT5G64740.1	54.641	474	196	7	1	468	1	461	6.76e-163	489
Msa0382690	AT4G39350.1	52.350	468	217	3	1	468	1	462	6.31e-160	481
Msa0382690	AT2G21770.1	51.340	485	201	8	1	468	1	467	9.98e-156	471
Msa0382690	AT5G44030.1	50.343	437	162	5	34	468	17	400	3.73e-141	432
Msa0382690	AT5G44030.2	50.562	445	178	5	34	468	17	429	1.32e-140	431
Msa0382690	AT4G18780.1	47.032	438	148	7	39	468	8	369	2.76e-119	373
Msa0382690	AT4G38190.1	49.430	263	122	2	213	464	196	458	2.02e-75	257
Msa0382690	AT2G33100.2	48.770	244	119	2	227	464	126	369	8.33e-68	235
Msa0382690	AT2G33100.1	48.770	244	119	2	227	464	126	369	8.33e-68	235
Msa0382690	AT3G03050.1	47.200	250	120	3	227	464	231	480	9.42e-68	235
Msa0382690	AT1G02730.1	55.051	198	84	1	264	456	299	496	6.87e-67	233
Msa0382690	AT5G16910.1	53.365	208	92	1	266	468	280	487	1.68e-65	229
Msa0382690	AT1G32180.1	49.776	223	107	1	251	468	90	312	1.10e-63	223
Msa0382690	AT1G32180.2	49.776	223	107	1	251	468	90	312	1.10e-63	223
Msa0382690	AT5G44030.3	76.860	121	28	0	348	468	1	121	1.28e-56	201
Msa0382690	AT2G32530.1	46.541	159	75	3	287	442	24	175	3.28e-37	145
Msa0382690	AT4G15320.2	40.741	189	102	3	283	471	23	201	3.36e-37	145
Msa0382690	AT4G15320.1	41.530	183	97	3	283	465	23	195	3.60e-37	145
Msa0382690	AT4G15320.4	41.530	183	97	3	283	465	23	195	4.53e-37	145
Msa0382690	AT2G32540.1	49.618	131	60	1	311	441	50	174	5.07e-37	145
Msa0382690	AT4G15320.3	40.741	189	102	3	283	471	23	201	8.45e-37	144
Msa0382690	AT4G15320.5	40.741	189	102	3	283	471	23	201	9.25e-37	144
Msa0382690	AT2G32620.2	50.376	133	58	2	311	442	50	175	1.13e-35	139
Msa0382690	AT1G55850.1	43.750	160	84	2	311	470	65	218	2.28e-35	140
Msa0382690	AT2G32620.3	50.376	133	58	2	311	442	50	175	4.14e-35	138
Msa0382690	AT2G32620.1	50.376	133	58	2	311	442	50	175	8.71e-35	138
Msa0382690	AT2G32610.1	44.025	159	79	3	290	445	27	178	4.94e-32	130
Msa0382690	AT4G15290.1	40.373	161	87	2	311	471	50	201	6.21e-30	124
Msa0382690	AT4G24010.1	38.650	163	91	3	281	441	25	180	1.12e-28	120
Msa0382690	AT4G23990.1	37.714	175	100	3	281	453	44	211	2.26e-28	119
Msa0382690	AT4G24000.1	38.650	163	91	3	281	441	22	177	5.20e-28	118
Msa0382690	AT2G32620.4	58.228	79	33	0	364	442	1	79	2.22e-24	107

Find 129 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCAGAAGATTGATTACTTAA+AGG	0.160961	3_1:-85441953	Msa0382690:CDS
CGGTTAATGGGAGACCATTT+TGG	0.207288	3_1:+85442381	None:intergenic
GCCTCTTCCGGCATGGTTGC+TGG	0.232202	3_1:-85444808	Msa0382690:CDS
TATGAGTTTAAGTCCTTTGA+TGG	0.251110	3_1:+85443428	None:intergenic
CAGATAAGTCTCACGGTTAA+TGG	0.255036	3_1:+85442368	None:intergenic
TTCAAATTCTTCAATGGTTT+CGG	0.261810	3_1:+85444528	None:intergenic
CCGAACTACTTCTGGTCCTT+TGG	0.273359	3_1:-85443605	Msa0382690:CDS
GTGTTCCGGCTGATAGTTCT+TGG	0.298741	3_1:-85442516	Msa0382690:CDS
CATTAACCGTGAGACTTATC+TGG	0.303947	3_1:-85442367	Msa0382690:CDS
CAATCTGTCCGAACTACTTC+TGG	0.316657	3_1:-85443613	Msa0382690:CDS
CTTCAGTTATCTGTGAGATT+TGG	0.320317	3_1:-85442434	Msa0382690:CDS
ACATGTAGAAATATTAAATA+TGG	0.322496	3_1:-85441835	Msa0382690:three_prime_UTR
GTTCGGACAGATTGATTATC+AGG	0.323657	3_1:+85443622	None:intergenic
CACAATATGGAAGCCTCTTC+CGG	0.324269	3_1:-85444820	Msa0382690:exon
GGACTTAAACTCATATGGTT+TGG	0.327231	3_1:-85443420	Msa0382690:CDS
ATCGTGTTGTCATCGTGTTC+CGG	0.328735	3_1:-85442530	Msa0382690:CDS
AATAAATATTGAACTGGAAA+TGG	0.330266	3_1:+85441863	None:intergenic
CATCACTCTCTGTCACAATA+TGG	0.342160	3_1:-85444833	Msa0382690:exon
GACTTAAACTCATATGGTTT+GGG	0.349610	3_1:-85443419	Msa0382690:CDS
TGGTTGCCTTGGATCAATAT+AGG	0.363514	3_1:+85443555	None:intergenic
TCATAACAATCTCGACAAAC+AGG	0.367078	3_1:+85444420	None:intergenic
TCAAAGGACTTAAACTCATA+TGG	0.375839	3_1:-85443425	Msa0382690:CDS
TCTTGCTATGTATCTGATGA+TGG	0.377670	3_1:-85442090	Msa0382690:CDS
CGAACTACTTCTGGTCCTTT+GGG	0.379490	3_1:-85443604	Msa0382690:CDS
ACACGATGACAACACGATAA+GGG	0.380330	3_1:+85442535	None:intergenic
TTCTGAAGAAAATAAAATTC+AGG	0.388075	3_1:+85441970	None:intergenic
ACAGTGTTTGCAGTTACAAT+AGG	0.406210	3_1:+85442153	None:intergenic
TGTCCATTCAAATTCTTCAA+TGG	0.418001	3_1:+85444522	None:intergenic
ATTGAAGGGACTGGTTCTAA+TGG	0.418168	3_1:-85443290	Msa0382690:CDS
CGATCTGCGTTCAGATATAC+AGG	0.421846	3_1:+85444883	None:intergenic
AACAAGCTCGTTACGATTGT+GGG	0.423362	3_1:+85444783	None:intergenic
AGATAAGTCTCACGGTTAAT+GGG	0.429796	3_1:+85442369	None:intergenic
GTCACGATTCTGCCGACAGC+GGG	0.430935	3_1:-85444753	Msa0382690:CDS
GGTTGCCTTGGATCAATATA+GGG	0.431455	3_1:+85443556	None:intergenic
TCTAGAAATAAATATTGAAC+TGG	0.441002	3_1:+85441857	None:intergenic
AACACGATGACAACACGATA+AGG	0.448331	3_1:+85442534	None:intergenic
AAATAAAATTCAGGTGCTCT+TGG	0.450426	3_1:+85441979	None:intergenic
ATCTGGAGAGGCTTGCCATA+AGG	0.458191	3_1:-85442350	Msa0382690:intron
AAACCATTGAAGAATTTGAA+TGG	0.458648	3_1:-85444525	Msa0382690:CDS
CTTCTGAGCTTTAGCAACAT+AGG	0.459632	3_1:+85441761	None:intergenic
GCCAGCAACCATGCCGGAAG+AGG	0.463003	3_1:+85444807	None:intergenic
GGTCAGCTGAGATGAAGAAA+TGG	0.467573	3_1:+85442557	None:intergenic
ATGGGTACAATCCGACTCAT+AGG	0.468042	3_1:+85442576	None:intergenic
AGCACTATACCTGGTTGCCT+TGG	0.471870	3_1:+85443544	None:intergenic
GGAAGGAAAGGGTTGAAGGT+TGG	0.478024	3_1:-85443385	Msa0382690:CDS
AAACTCGGCTGTTTCAGATA+AGG	0.490058	3_1:+85442044	None:intergenic
GACTGGAAGGAAAGGGTTGA+AGG	0.495484	3_1:-85443389	Msa0382690:CDS
GAACAAGCTCGTTACGATTG+TGG	0.496218	3_1:+85444782	None:intergenic
CCAAAGGACCAGAAGTAGTT+CGG	0.499714	3_1:+85443605	None:intergenic
AATATGAAGAATTCAAAGTA+AGG	0.503429	3_1:-85441791	Msa0382690:three_prime_UTR
AAGGATTACAGTTTGGCCAT+TGG	0.503990	3_1:+85444065	None:intergenic
CACCCACATCTTTGCAAACT+CGG	0.507465	3_1:+85442029	None:intergenic
TCATCATCTCCATCGACTCT+AGG	0.507830	3_1:+85444237	None:intergenic
TCGTCGCTCCTTAACAAAAG+AGG	0.508659	3_1:+85441918	None:intergenic
TATGAATATGAGCGAAAAGA+AGG	0.509434	3_1:-85444402	Msa0382690:CDS
AATTAGTATTGACAGATGTC+TGG	0.510676	3_1:-85443658	Msa0382690:intron
AATGCAAAACTAGATACAAA+AGG	0.514508	3_1:-85444362	Msa0382690:CDS
TTTGTTGCTTGTAATGAATG+TGG	0.517856	3_1:-85444447	Msa0382690:CDS
TAGCAAGAAACCTTGTCGAC+AGG	0.521061	3_1:+85442105	None:intergenic
TGGAAACTGATCCAAAATCC+AGG	0.523796	3_1:+85442401	None:intergenic
AGTGAGTGAGCTTTCTCAGA+TGG	0.527989	3_1:+85443580	None:intergenic
CAGAGAGTGATGCAGATGAA+TGG	0.528384	3_1:+85444844	None:intergenic
TACAGTTCCGGTGAGAATTG+TGG	0.530491	3_1:-85443453	Msa0382690:intron
TAAGGAGCGACGAGCAATGA+AGG	0.537145	3_1:-85441908	Msa0382690:CDS
CATATATGTGGTGAGGATGT+TGG	0.538983	3_1:-85444492	Msa0382690:CDS
AGCGGAGGAGGAGATATTGA+AGG	0.541051	3_1:-85443305	Msa0382690:CDS
GTGAGTGAGCTTTCTCAGAT+GGG	0.542714	3_1:+85443581	None:intergenic
GCTGATGGGAAAAGCGGAGG+AGG	0.543579	3_1:-85443317	Msa0382690:CDS
TGGCCATTGGTGAGAAGAGG+AGG	0.543739	3_1:+85444078	None:intergenic
ATGGTTTGGGAAATGTTGAC+TGG	0.549411	3_1:-85443406	Msa0382690:CDS
GTCAGCTGAGATGAAGAAAT+GGG	0.549519	3_1:+85442558	None:intergenic
GGAGGAGATATTGAAGGGAC+TGG	0.553921	3_1:-85443299	Msa0382690:CDS
GTACTGACAAATACGTCGAC+AGG	0.555484	3_1:+85442198	None:intergenic
ACAATAGGTGGCTCTTTGAG+AGG	0.557014	3_1:+85442168	None:intergenic
CAGCCGAGTTTGCAAAGATG+TGG	0.557850	3_1:-85442032	Msa0382690:CDS
CACTTCCCTATATTGATCCA+AGG	0.563873	3_1:-85443561	Msa0382690:CDS
CGTCGCTCCTTAACAAAAGA+GGG	0.564871	3_1:+85441919	None:intergenic
TCAGGGAGTCCTAGAGTCGA+TGG	0.565975	3_1:-85444246	Msa0382690:intron
CACGATGACAACACGATAAG+GGG	0.571798	3_1:+85442536	None:intergenic
AGCAAGAAACCTTGTCGACA+GGG	0.574017	3_1:+85442106	None:intergenic
CAACCTCCTCTTCTCACCAA+TGG	0.578750	3_1:-85444081	Msa0382690:CDS
CAATAGGTGGCTCTTTGAGA+GGG	0.582620	3_1:+85442169	None:intergenic
GAGAATTGTGGATCCATCAA+AGG	0.584083	3_1:-85443441	Msa0382690:CDS
GTTTGGCCATTGGTGAGAAG+AGG	0.584350	3_1:+85444075	None:intergenic
GTGTTTGCAGTTACAATAGG+TGG	0.584815	3_1:+85442156	None:intergenic
GAAATGTTGACTGGAAGGAA+AGG	0.585668	3_1:-85443397	Msa0382690:CDS
TATATTGATCCAAGGCAACC+AGG	0.590258	3_1:-85443553	Msa0382690:intron
TGATGGAGAACCATCACAGT+TGG	0.592603	3_1:-85442223	Msa0382690:CDS
CATAACAATCTCGACAAACA+GGG	0.595414	3_1:+85444421	None:intergenic
AAATGTTGACTGGAAGGAAA+GGG	0.595770	3_1:-85443396	Msa0382690:CDS
AAGAACACAAACACAAACAC+TGG	0.596999	3_1:-85445011	Msa0382690:five_prime_UTR
GCCTCTCCAGATAAGTCTCA+CGG	0.598956	3_1:+85442361	None:intergenic
GATTGATTACTTAAAGGACA+AGG	0.599814	3_1:-85441947	Msa0382690:CDS
TGTTGACTACCCTGTCGACA+AGG	0.603351	3_1:-85442115	Msa0382690:CDS
TATGGAAGCCTCTTCCGGCA+TGG	0.605750	3_1:-85444815	Msa0382690:CDS
GTGGGAGCCAGCAACCATGC+CGG	0.607689	3_1:+85444801	None:intergenic
TAATAAGTCAAGGAGACAGT+GGG	0.609464	3_1:-85444148	Msa0382690:CDS
ACAGATTGATTATCAGGTGT+AGG	0.612850	3_1:+85443628	None:intergenic
GATGGATCCACAATTCTCAC+CGG	0.614223	3_1:+85443446	None:intergenic
AGCCGAGTTTGCAAAGATGT+GGG	0.615569	3_1:-85442031	Msa0382690:CDS
AGCAACAAACACATCACCGG+TGG	0.617704	3_1:+85444461	None:intergenic
AGAAACCAAGAACTATCAGC+CGG	0.622521	3_1:+85442511	None:intergenic
ACCGTGAGACTTATCTGGAG+AGG	0.622664	3_1:-85442362	Msa0382690:CDS
TCGACAGGAGCCAACTGTGA+TGG	0.623093	3_1:+85442213	None:intergenic
GCGGAGGAGGAGATATTGAA+GGG	0.624669	3_1:-85443304	Msa0382690:CDS
TAAGAAACTAACCCCGCTGT+CGG	0.625109	3_1:+85444741	None:intergenic
TAACTGAAGTCAACCACAGT+GGG	0.631451	3_1:+85442448	None:intergenic
GCTTTCTCAGATGGGCCCAA+AGG	0.632920	3_1:+85443589	None:intergenic
AGATATGCTGATGGGAAAAG+CGG	0.635238	3_1:-85443323	Msa0382690:CDS
ACAAGCAACAAACACATCAC+CGG	0.638010	3_1:+85444458	None:intergenic
GGACAAGTCTGTCATATATG+TGG	0.638984	3_1:-85444504	Msa0382690:CDS
ATGCTCGACAACCTATGAGT+CGG	0.642320	3_1:-85442587	Msa0382690:CDS
ATGACTGGTAGATATGCTGA+TGG	0.642913	3_1:-85443332	Msa0382690:CDS
TTGTGTAGATATGATCGTGA+TGG	0.643761	3_1:-85442240	Msa0382690:intron
GATGTTGGAACAACACCCAC+CGG	0.644734	3_1:-85444477	Msa0382690:CDS
TTTGGGAAATGTTGACTGGA+AGG	0.645984	3_1:-85443402	Msa0382690:CDS
GCAATATCGTGTAACTCACC+CGG	0.646970	3_1:-85442484	Msa0382690:CDS
ACTAGATACAAAAGGCTCAG+AGG	0.647746	3_1:-85444354	Msa0382690:intron
AACGAGTTCAATTATCGACA+AGG	0.650849	3_1:-85444189	Msa0382690:CDS
CGTCACGATTCTGCCGACAG+CGG	0.656503	3_1:-85444754	Msa0382690:CDS
ATAATAAGTCAAGGAGACAG+TGG	0.658283	3_1:-85444149	Msa0382690:CDS
TATGCTGATGGGAAAAGCGG+AGG	0.658844	3_1:-85443320	Msa0382690:CDS
CGACGTATTTGTCAGTACAG+TGG	0.685009	3_1:-85442193	Msa0382690:CDS
GCAACAAACACATCACCGGT+GGG	0.693813	3_1:+85444462	None:intergenic
TAAAAGATGCTTACCCACTG+TGG	0.694404	3_1:-85442461	Msa0382690:CDS
TGACTGGTAGATATGCTGAT+GGG	0.702596	3_1:-85443331	Msa0382690:CDS
AGTCTGTCATATATGTGGTG+AGG	0.712202	3_1:-85444499	Msa0382690:CDS
TCACGATTCTGCCGACAGCG+GGG	0.734794	3_1:-85444752	Msa0382690:intron
ATAACTGAAGTCAACCACAG+TGG	0.769108	3_1:+85442447	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATAATAATAATAATAAGTCA+AGG	-	chr3_1:85442646-85442665	Msa0382690:intron	10.0%
!!!	AACTTATTACTTTTTTTTTT+GGG	-	chr3_1:85442892-85442911	Msa0382690:intron	10.0%
!!	TTTCTAAATATGTTTACATT+TGG	-	chr3_1:85442786-85442805	Msa0382690:intron	15.0%
!!	TTCTAAATATGTTTACATTT+GGG	-	chr3_1:85442787-85442806	Msa0382690:intron	15.0%
!!!	GAACTTATTACTTTTTTTTT+TGG	-	chr3_1:85442891-85442910	Msa0382690:intron	15.0%
!!	GTTTACTTTAAATATTTACT+TGG	-	chr3_1:85444136-85444155	Msa0382690:CDS	15.0%
!!!	AATTTCATTTCAAGTTAAAA+TGG	-	chr3_1:85444163-85444182	Msa0382690:CDS	15.0%
!!	ACATGTAGAAATATTAAATA+TGG	-	chr3_1:85444969-85444988	Msa0382690:five_prime_UTR	15.0%
!!	TTAATGCTATAATTCTAATC+TGG	-	chr3_1:85442197-85442216	Msa0382690:CDS	20.0%
!!!	TTGATTTTAAATGATGAATC+TGG	-	chr3_1:85442534-85442553	Msa0382690:CDS	20.0%
!!	TATATTTGATATTACAGTTC+CGG	-	chr3_1:85443339-85443358	Msa0382690:CDS	20.0%
!!!	AGGCTCAATTTATTTTTATA+TGG	-	chr3_1:85443644-85443663	Msa0382690:CDS	20.0%
!!!	TTTCTCATTATGACTTATTT+TGG	-	chr3_1:85444086-85444105	Msa0382690:CDS	20.0%
!!!	TTCTCATTATGACTTATTTT+GGG	-	chr3_1:85444087-85444106	Msa0382690:CDS	20.0%
!!!	TTCTGAAGAAAATAAAATTC+AGG	+	chr3_1:85444837-85444856	None:intergenic	20.0%
!!	AATAAATATTGAACTGGAAA+TGG	+	chr3_1:85444944-85444963	None:intergenic	20.0%
!!	TCTAGAAATAAATATTGAAC+TGG	+	chr3_1:85444950-85444969	None:intergenic	20.0%
!!	AATATGAAGAATTCAAAGTA+AGG	-	chr3_1:85445013-85445032	Msa0382690:five_prime_UTR	20.0%
!!	TTGATCTTCAACTTTTTATC+AGG	-	chr3_1:85442164-85442183	Msa0382690:CDS	25.0%
!	TTCAAATTCTTCAATGGTTT+CGG	+	chr3_1:85442279-85442298	None:intergenic	25.0%
!	AAACCATTGAAGAATTTGAA+TGG	-	chr3_1:85442279-85442298	Msa0382690:intron	25.0%
!	AATGCAAAACTAGATACAAA+AGG	-	chr3_1:85442442-85442461	Msa0382690:CDS	25.0%
!	TAACAGTTGAATAGAATCAA+AGG	+	chr3_1:85442761-85442780	None:intergenic	25.0%
!	TGATTCTATTCAACTGTTAT+AGG	-	chr3_1:85442762-85442781	Msa0382690:intron	25.0%
!!!	TTCATCTTAACACTTTTTGA+CGG	+	chr3_1:85442874-85442893	None:intergenic	25.0%
!!!	ATGTATTTCATGTTTTTTGC+AGG	-	chr3_1:85443061-85443080	Msa0382690:intron	25.0%
!	TAATAAGATCAGATTGAGAA+TGG	-	chr3_1:85443785-85443804	Msa0382690:intron	25.0%
!	AATAAGATCAGATTGAGAAT+GGG	-	chr3_1:85443786-85443805	Msa0382690:intron	25.0%
!	TAGTGAAGATGTTAATGTTA+TGG	-	chr3_1:85443939-85443958	Msa0382690:intron	25.0%
!!!	TTTTTTTTTTGGTGGACTTT+TGG	-	chr3_1:85444021-85444040	Msa0382690:intron	25.0%
!	TGAGAAACATACATAACATT+AGG	+	chr3_1:85444073-85444092	None:intergenic	25.0%
!!!	ATACTGTGTTTTTTGCAAAA+GGG	+	chr3_1:85444801-85444820	None:intergenic	25.0%
!!!	AATACTGTGTTTTTTGCAAA+AGG	+	chr3_1:85444802-85444821	None:intergenic	25.0%
!	TCAGAAGATTGATTACTTAA+AGG	-	chr3_1:85444851-85444870	Msa0382690:five_prime_UTR	25.0%
!!	GTGTTTTTGTGAAATGAGAT+AGG	-	chr3_1:85441848-85441867	Msa0382690:exon	30.0%
	AAAAATATTGCGTGTTGAGT+GGG	-	chr3_1:85441879-85441898	Msa0382690:CDS	30.0%
	TTACAACTTTAGATCAGATC+TGG	-	chr3_1:85442119-85442138	Msa0382690:CDS	30.0%
	TGTCCATTCAAATTCTTCAA+TGG	+	chr3_1:85442285-85442304	None:intergenic	30.0%
!	TTTGTTGCTTGTAATGAATG+TGG	-	chr3_1:85442357-85442376	Msa0382690:CDS	30.0%
	TATGAATATGAGCGAAAAGA+AGG	-	chr3_1:85442402-85442421	Msa0382690:CDS	30.0%
!!!	TTGTATCTAGTTTTGCATTG+AGG	+	chr3_1:85442441-85442460	None:intergenic	30.0%
!	TCAGAGGTTAGTTAATTACT+TGG	-	chr3_1:85442466-85442485	Msa0382690:CDS	30.0%
	TTAAATGATGAATCTGGATC+AGG	-	chr3_1:85442540-85442559	Msa0382690:CDS	30.0%
	TAAATGATGAATCTGGATCA+GGG	-	chr3_1:85442541-85442560	Msa0382690:CDS	30.0%
	AGAATCAAAGGATTACAGTT+TGG	+	chr3_1:85442749-85442768	None:intergenic	30.0%
	ACACTGCATTATATATGCAA+GGG	+	chr3_1:85442989-85443008	None:intergenic	30.0%
!!	AATTAGTATTGACAGATGTC+TGG	-	chr3_1:85443146-85443165	Msa0382690:intron	30.0%
	TATGAGTTTAAGTCCTTTGA+TGG	+	chr3_1:85443379-85443398	None:intergenic	30.0%
	TCAAAGGACTTAAACTCATA+TGG	-	chr3_1:85443379-85443398	Msa0382690:CDS	30.0%
	GACTTAAACTCATATGGTTT+GGG	-	chr3_1:85443385-85443404	Msa0382690:CDS	30.0%
	AAAAATATGGTACAGATGAC+TGG	-	chr3_1:85443457-85443476	Msa0382690:intron	30.0%
	ATCAAACCAAACAGAATAAG+TGG	+	chr3_1:85443560-85443579	None:intergenic	30.0%
	TCATTGTTTGTTTATGCTAG+AGG	-	chr3_1:85443624-85443643	Msa0382690:CDS	30.0%
!	AATTTTCATTCTCCTTCTCA+TGG	-	chr3_1:85443681-85443700	Msa0382690:intron	30.0%
	GATCAATACACTCTATTGTT+TGG	+	chr3_1:85443723-85443742	None:intergenic	30.0%
	AATGGGATTGTTTAACCAAA+AGG	-	chr3_1:85443803-85443822	Msa0382690:intron	30.0%
	ATGGGATTGTTTAACCAAAA+GGG	-	chr3_1:85443804-85443823	Msa0382690:intron	30.0%
!!!	TAACCAAAAGGGACATTTTT+TGG	-	chr3_1:85443815-85443834	Msa0382690:intron	30.0%
!!!	AACCAAAAGGGACATTTTTT+GGG	-	chr3_1:85443816-85443835	Msa0382690:intron	30.0%
	GATCATCTATTTGCATATTG+AGG	-	chr3_1:85443856-85443875	Msa0382690:intron	30.0%
	TGAAGATGTTAATGTTATGG+AGG	-	chr3_1:85443942-85443961	Msa0382690:intron	30.0%
	CTGTCAAAAACAGAAACAAA+GGG	+	chr3_1:85444189-85444208	None:intergenic	30.0%
!!!	CTTTGTTTCTGTTTTTGACA+GGG	-	chr3_1:85444188-85444207	Msa0382690:CDS	30.0%
!	TTTTGGATCAGTTTCCAAAA+TGG	-	chr3_1:85444409-85444428	Msa0382690:CDS	30.0%
	ACAAGACAAACTAAGATTAG+TGG	+	chr3_1:85444548-85444567	None:intergenic	30.0%
	AAATAAAATTCAGGTGCTCT+TGG	+	chr3_1:85444828-85444847	None:intergenic	30.0%
	GATTGATTACTTAAAGGACA+AGG	-	chr3_1:85444857-85444876	Msa0382690:five_prime_UTR	30.0%
	AAGAACACAAACACAAACAC+TGG	-	chr3_1:85441793-85441812	Msa0382690:three_prime_UTR	35.0%
	GAAAAATATTGCGTGTTGAG+TGG	-	chr3_1:85441878-85441897	Msa0382690:CDS	35.0%
	AACTTTAGATCAGATCTGGT+TGG	-	chr3_1:85442123-85442142	Msa0382690:CDS	35.0%
	CATAACAATCTCGACAAACA+GGG	+	chr3_1:85442386-85442405	None:intergenic	35.0%
	TCATAACAATCTCGACAAAC+AGG	+	chr3_1:85442387-85442406	None:intergenic	35.0%
	AACGAGTTCAATTATCGACA+AGG	-	chr3_1:85442615-85442634	Msa0382690:intron	35.0%
	ATAATAAGTCAAGGAGACAG+TGG	-	chr3_1:85442655-85442674	Msa0382690:intron	35.0%
	TAATAAGTCAAGGAGACAGT+GGG	-	chr3_1:85442656-85442675	Msa0382690:intron	35.0%
	AGCTAGAAATTCACCTCTTA+AGG	-	chr3_1:85442929-85442948	Msa0382690:intron	35.0%
	CATTATATATGCAAGGGTTG+GGG	+	chr3_1:85442983-85443002	None:intergenic	35.0%
	GCATTATATATGCAAGGGTT+GGG	+	chr3_1:85442984-85443003	None:intergenic	35.0%
	TGCATTATATATGCAAGGGT+TGG	+	chr3_1:85442985-85443004	None:intergenic	35.0%
	GACACTGCATTATATATGCA+AGG	+	chr3_1:85442990-85443009	None:intergenic	35.0%
	ACAGATTGATTATCAGGTGT+AGG	+	chr3_1:85443179-85443198	None:intergenic	35.0%
!	ATTCAAGTTAGCACTATACC+TGG	+	chr3_1:85443272-85443291	None:intergenic	35.0%
	GGACTTAAACTCATATGGTT+TGG	-	chr3_1:85443384-85443403	Msa0382690:CDS	35.0%
!	AAATGTTGACTGGAAGGAAA+GGG	-	chr3_1:85443408-85443427	Msa0382690:CDS	35.0%
	TGTAAGCCACTTATTCTGTT+TGG	-	chr3_1:85443551-85443570	Msa0382690:intron	35.0%
	ACTAGCTAATCATATGTGTG+AGG	-	chr3_1:85443588-85443607	Msa0382690:CDS	35.0%
!	AATCATATGTGTGAGGTATC+AGG	-	chr3_1:85443595-85443614	Msa0382690:CDS	35.0%
!	ATCATATGTGTGAGGTATCA+GGG	-	chr3_1:85443596-85443615	Msa0382690:CDS	35.0%
	CATCTATTTGCATATTGAGG+TGG	-	chr3_1:85443859-85443878	Msa0382690:intron	35.0%
	ATTATCCCAATTGGCAAGTT+AGG	-	chr3_1:85443968-85443987	Msa0382690:intron	35.0%
	TTATCCCAATTGGCAAGTTA+GGG	-	chr3_1:85443969-85443988	Msa0382690:intron	35.0%
!	AAATCCCTAACTTGCCAATT+GGG	+	chr3_1:85443976-85443995	None:intergenic	35.0%
!	AAAATCCCTAACTTGCCAAT+TGG	+	chr3_1:85443977-85443996	None:intergenic	35.0%
!!	AGGGATTTTATCTAGAGTGT+AGG	-	chr3_1:85443988-85444007	Msa0382690:intron	35.0%
!!	TTTTATCTAGAGTGTAGGCT+TGG	-	chr3_1:85443993-85444012	Msa0382690:intron	35.0%
!	TTTATCTAGAGTGTAGGCTT+GGG	-	chr3_1:85443994-85444013	Msa0382690:intron	35.0%
!!!	GCTTGGGGGTTTTTTTTTTT+TGG	-	chr3_1:85444010-85444029	Msa0382690:intron	35.0%
!!!	TGGGGGTTTTTTTTTTTTGG+TGG	-	chr3_1:85444013-85444032	Msa0382690:intron	35.0%
	CCTGTCAAAAACAGAAACAA+AGG	+	chr3_1:85444190-85444209	None:intergenic	35.0%
!!!	CCTTTGTTTCTGTTTTTGAC+AGG	-	chr3_1:85444187-85444206	Msa0382690:CDS	35.0%
	CTTCAGTTATCTGTGAGATT+TGG	-	chr3_1:85444370-85444389	Msa0382690:CDS	35.0%
!!!	AGATTTGGTTTGCATTTTCC+TGG	-	chr3_1:85444385-85444404	Msa0382690:CDS	35.0%
!	GTTTGCATTTTCCTGGATTT+TGG	-	chr3_1:85444392-85444411	Msa0382690:CDS	35.0%
	AGATAAGTCTCACGGTTAAT+GGG	+	chr3_1:85444438-85444457	None:intergenic	35.0%
	ACATAGCAATCCAAACCTTA+TGG	+	chr3_1:85444472-85444491	None:intergenic	35.0%
	TTGTGTAGATATGATCGTGA+TGG	-	chr3_1:85444564-85444583	Msa0382690:intron	35.0%
	ACAGTGTTTGCAGTTACAAT+AGG	+	chr3_1:85444654-85444673	None:intergenic	35.0%
!	TCTTGCTATGTATCTGATGA+TGG	-	chr3_1:85444714-85444733	Msa0382690:intron	35.0%
	CATCACTCTCTGTCACAATA+TGG	-	chr3_1:85441971-85441990	Msa0382690:CDS	40.0%
	AACAAGCTCGTTACGATTGT+GGG	+	chr3_1:85442024-85442043	None:intergenic	40.0%
	GGACAAGTCTGTCATATATG+TGG	-	chr3_1:85442300-85442319	Msa0382690:intron	40.0%
	AGTCTGTCATATATGTGGTG+AGG	-	chr3_1:85442305-85442324	Msa0382690:intron	40.0%
	CATATATGTGGTGAGGATGT+TGG	-	chr3_1:85442312-85442331	Msa0382690:intron	40.0%
	ACAAGCAACAAACACATCAC+CGG	+	chr3_1:85442349-85442368	None:intergenic	40.0%
	ACTAGATACAAAAGGCTCAG+AGG	-	chr3_1:85442450-85442469	Msa0382690:CDS	40.0%
	AAGGATTACAGTTTGGCCAT+TGG	+	chr3_1:85442742-85442761	None:intergenic	40.0%
!!	GAGGTGAATTTCTAGCTACT+AGG	+	chr3_1:85442926-85442945	None:intergenic	40.0%
	ACCTCTTAAGGTGAATAAGC+AGG	-	chr3_1:85442941-85442960	Msa0382690:intron	40.0%
	CCTCTTAAGGTGAATAAGCA+GGG	-	chr3_1:85442942-85442961	Msa0382690:intron	40.0%
	TGAGCTTAGCTCAATTGGTA+GGG	+	chr3_1:85443012-85443031	None:intergenic	40.0%
	GTTCGGACAGATTGATTATC+AGG	+	chr3_1:85443185-85443204	None:intergenic	40.0%
	CACTTCCCTATATTGATCCA+AGG	-	chr3_1:85443243-85443262	Msa0382690:intron	40.0%
	GGTTGCCTTGGATCAATATA+GGG	+	chr3_1:85443251-85443270	None:intergenic	40.0%
	TGGTTGCCTTGGATCAATAT+AGG	+	chr3_1:85443252-85443271	None:intergenic	40.0%
	TATATTGATCCAAGGCAACC+AGG	-	chr3_1:85443251-85443270	Msa0382690:intron	40.0%
	GAGAATTGTGGATCCATCAA+AGG	-	chr3_1:85443363-85443382	Msa0382690:CDS	40.0%
!	ATGGTTTGGGAAATGTTGAC+TGG	-	chr3_1:85443398-85443417	Msa0382690:CDS	40.0%
!	TTTGGGAAATGTTGACTGGA+AGG	-	chr3_1:85443402-85443421	Msa0382690:CDS	40.0%
!	GAAATGTTGACTGGAAGGAA+AGG	-	chr3_1:85443407-85443426	Msa0382690:CDS	40.0%
	GCTGAAGCACGAGAAAAATA+TGG	-	chr3_1:85443444-85443463	Msa0382690:CDS	40.0%
	ATGACTGGTAGATATGCTGA+TGG	-	chr3_1:85443472-85443491	Msa0382690:intron	40.0%
	TGACTGGTAGATATGCTGAT+GGG	-	chr3_1:85443473-85443492	Msa0382690:intron	40.0%
	AGATATGCTGATGGGAAAAG+CGG	-	chr3_1:85443481-85443500	Msa0382690:intron	40.0%
!!	ATTGAAGGGACTGGTTCTAA+TGG	-	chr3_1:85443514-85443533	Msa0382690:intron	40.0%
	CTTGTTACCTCTTCAAGAGT+TGG	-	chr3_1:85443742-85443761	Msa0382690:intron	40.0%
	ATGTGATCCAACTCTTGAAG+AGG	+	chr3_1:85443752-85443771	None:intergenic	40.0%
!	GACCCAAAAAATGTCCCTTT+TGG	+	chr3_1:85443821-85443840	None:intergenic	40.0%
	TTGCATATTGAGGTGGTAGT+AGG	-	chr3_1:85443866-85443885	Msa0382690:intron	40.0%
	TGCATATTGAGGTGGTAGTA+GGG	-	chr3_1:85443867-85443886	Msa0382690:intron	40.0%
	CAACTTTCTCCATCATCTAC+AGG	+	chr3_1:85443907-85443926	None:intergenic	40.0%
!!	CTGTAGATGATGGAGAAAGT+TGG	-	chr3_1:85443905-85443924	Msa0382690:intron	40.0%
!!	AGATGATGGAGAAAGTTGGA+TGG	-	chr3_1:85443909-85443928	Msa0382690:intron	40.0%
!	TGGAGGTTGATTATCCCAAT+TGG	-	chr3_1:85443959-85443978	Msa0382690:intron	40.0%
!	TTATCTAGAGTGTAGGCTTG+GGG	-	chr3_1:85443995-85444014	Msa0382690:intron	40.0%
	GTCAGCTGAGATGAAGAAAT+GGG	+	chr3_1:85444249-85444268	None:intergenic	40.0%
	ACACGATGACAACACGATAA+GGG	+	chr3_1:85444272-85444291	None:intergenic	40.0%
	AACACGATGACAACACGATA+AGG	+	chr3_1:85444273-85444292	None:intergenic	40.0%
	AGAAACCAAGAACTATCAGC+CGG	+	chr3_1:85444296-85444315	None:intergenic	40.0%
!	AGTGGGTAAGCATCTTTTAC+CGG	+	chr3_1:85444342-85444361	None:intergenic	40.0%
	TAAAAGATGCTTACCCACTG+TGG	-	chr3_1:85444343-85444362	Msa0382690:intron	40.0%
	TAACTGAAGTCAACCACAGT+GGG	+	chr3_1:85444359-85444378	None:intergenic	40.0%
	ATAACTGAAGTCAACCACAG+TGG	+	chr3_1:85444360-85444379	None:intergenic	40.0%
	TGGAAACTGATCCAAAATCC+AGG	+	chr3_1:85444406-85444425	None:intergenic	40.0%
	CAGATAAGTCTCACGGTTAA+TGG	+	chr3_1:85444439-85444458	None:intergenic	40.0%
	CATTAACCGTGAGACTTATC+TGG	-	chr3_1:85444437-85444456	Msa0382690:CDS	40.0%
	TGCTATGTTTCCTTCACTGT+TGG	-	chr3_1:85444484-85444503	Msa0382690:CDS	40.0%
	GAACAGAAAATGTCGCATCA+TGG	+	chr3_1:85444526-85444545	None:intergenic	40.0%
	GTGTTTGCAGTTACAATAGG+TGG	+	chr3_1:85444651-85444670	None:intergenic	40.0%
!	AAACTCGGCTGTTTCAGATA+AGG	+	chr3_1:85444763-85444782	None:intergenic	40.0%
!	GGTTCAACCCTCTTTTGTTA+AGG	-	chr3_1:85444878-85444897	Msa0382690:five_prime_UTR	40.0%
	CGATCTGCGTTCAGATATAC+AGG	+	chr3_1:85441924-85441943	None:intergenic	45.0%
	CAGAGAGTGATGCAGATGAA+TGG	+	chr3_1:85441963-85441982	None:intergenic	45.0%
	CACAATATGGAAGCCTCTTC+CGG	-	chr3_1:85441984-85442003	Msa0382690:CDS	45.0%
	GAACAAGCTCGTTACGATTG+TGG	+	chr3_1:85442025-85442044	None:intergenic	45.0%
	TAAGAAACTAACCCCGCTGT+CGG	+	chr3_1:85442066-85442085	None:intergenic	45.0%
!!	TCATCATCTCCATCGACTCT+AGG	+	chr3_1:85442570-85442589	None:intergenic	45.0%
	CCCTGCTTATTCACCTTAAG+AGG	+	chr3_1:85442945-85442964	None:intergenic	45.0%
!	GTGAATAAGCAGGGTATTCG+AGG	-	chr3_1:85442951-85442970	Msa0382690:intron	45.0%
	TATATGCAAGGGTTGGGGTT+CGG	+	chr3_1:85442978-85442997	None:intergenic	45.0%
	GTGAGCTTAGCTCAATTGGT+AGG	+	chr3_1:85443013-85443032	None:intergenic	45.0%
	ACCAATTGAGCTAAGCTCAC+AGG	-	chr3_1:85443013-85443032	Msa0382690:intron	45.0%
	CCAATTGAGCTAAGCTCACA+GGG	-	chr3_1:85443014-85443033	Msa0382690:intron	45.0%
	CAATCTGTCCGAACTACTTC+TGG	-	chr3_1:85443191-85443210	Msa0382690:intron	45.0%
	CCAAAGGACCAGAAGTAGTT+CGG	+	chr3_1:85443202-85443221	None:intergenic	45.0%
	CGAACTACTTCTGGTCCTTT+GGG	-	chr3_1:85443200-85443219	Msa0382690:intron	45.0%
	GTGAGTGAGCTTTCTCAGAT+GGG	+	chr3_1:85443226-85443245	None:intergenic	45.0%
	AGTGAGTGAGCTTTCTCAGA+TGG	+	chr3_1:85443227-85443246	None:intergenic	45.0%
	TACAGTTCCGGTGAGAATTG+TGG	-	chr3_1:85443351-85443370	Msa0382690:CDS	45.0%
	GATGGATCCACAATTCTCAC+CGG	+	chr3_1:85443361-85443380	None:intergenic	45.0%
	CAGTCTTGACAACCATGAGA+AGG	+	chr3_1:85443696-85443715	None:intergenic	45.0%
	ATCATCTACAGGTACAGCAG+AGG	+	chr3_1:85443896-85443915	None:intergenic	45.0%
	TCTGCTGTACCTGTAGATGA+TGG	-	chr3_1:85443895-85443914	Msa0382690:intron	45.0%
	TGATGGAGAAAGTTGGATGG+AGG	-	chr3_1:85443912-85443931	Msa0382690:intron	45.0%
!	TATCTAGAGTGTAGGCTTGG+GGG	-	chr3_1:85443996-85444015	Msa0382690:intron	45.0%
	ATGCTCGACAACCTATGAGT+CGG	-	chr3_1:85444217-85444236	Msa0382690:CDS	45.0%
	ATGGGTACAATCCGACTCAT+AGG	+	chr3_1:85444231-85444250	None:intergenic	45.0%
	GGTCAGCTGAGATGAAGAAA+TGG	+	chr3_1:85444250-85444269	None:intergenic	45.0%
	CACGATGACAACACGATAAG+GGG	+	chr3_1:85444271-85444290	None:intergenic	45.0%
	ATCGTGTTGTCATCGTGTTC+CGG	-	chr3_1:85444274-85444293	Msa0382690:intron	45.0%
	GCAATATCGTGTAACTCACC+CGG	-	chr3_1:85444320-85444339	Msa0382690:intron	45.0%
!	GTGGGTAAGCATCTTTTACC+GGG	+	chr3_1:85444341-85444360	None:intergenic	45.0%
!	CGGTTAATGGGAGACCATTT+TGG	+	chr3_1:85444426-85444445	None:intergenic	45.0%
	GTTTCCTTCACTGTTGGACT+TGG	-	chr3_1:85444490-85444509	Msa0382690:CDS	45.0%
	TGATGGAGAACCATCACAGT+TGG	-	chr3_1:85444581-85444600	Msa0382690:intron	45.0%
!	GTACTGACAAATACGTCGAC+AGG	+	chr3_1:85444609-85444628	None:intergenic	45.0%
	CGACGTATTTGTCAGTACAG+TGG	-	chr3_1:85444611-85444630	Msa0382690:intron	45.0%
!	CAATAGGTGGCTCTTTGAGA+GGG	+	chr3_1:85444638-85444657	None:intergenic	45.0%
	ACAATAGGTGGCTCTTTGAG+AGG	+	chr3_1:85444639-85444658	None:intergenic	45.0%
	AGCAAGAAACCTTGTCGACA+GGG	+	chr3_1:85444701-85444720	None:intergenic	45.0%
	TAGCAAGAAACCTTGTCGAC+AGG	+	chr3_1:85444702-85444721	None:intergenic	45.0%
	AGCCGAGTTTGCAAAGATGT+GGG	-	chr3_1:85444773-85444792	Msa0382690:CDS	45.0%
	CACCCACATCTTTGCAAACT+CGG	+	chr3_1:85444778-85444797	None:intergenic	45.0%
	CGTCGCTCCTTAACAAAAGA+GGG	+	chr3_1:85444888-85444907	None:intergenic	45.0%
	TCGTCGCTCCTTAACAAAAG+AGG	+	chr3_1:85444889-85444908	None:intergenic	45.0%
	GATGTTGGAACAACACCCAC+CGG	-	chr3_1:85442327-85442346	Msa0382690:intron	50.0%
	GCAACAAACACATCACCGGT+GGG	+	chr3_1:85442345-85442364	None:intergenic	50.0%
	AGCAACAAACACATCACCGG+TGG	+	chr3_1:85442346-85442365	None:intergenic	50.0%
	CAACCTCCTCTTCTCACCAA+TGG	-	chr3_1:85442723-85442742	Msa0382690:intron	50.0%
	GTTTGGCCATTGGTGAGAAG+AGG	+	chr3_1:85442732-85442751	None:intergenic	50.0%
	CCCTGTGAGCTTAGCTCAAT+TGG	+	chr3_1:85443017-85443036	None:intergenic	50.0%
	GCTAAGCTCACAGGGACATA+TGG	-	chr3_1:85443022-85443041	Msa0382690:intron	50.0%
	CCGAACTACTTCTGGTCCTT+TGG	-	chr3_1:85443199-85443218	Msa0382690:intron	50.0%
	AGCACTATACCTGGTTGCCT+TGG	+	chr3_1:85443263-85443282	None:intergenic	50.0%
	GACTGGAAGGAAAGGGTTGA+AGG	-	chr3_1:85443415-85443434	Msa0382690:CDS	50.0%
	GGAAGGAAAGGGTTGAAGGT+TGG	-	chr3_1:85443419-85443438	Msa0382690:CDS	50.0%
	TATGCTGATGGGAAAAGCGG+AGG	-	chr3_1:85443484-85443503	Msa0382690:intron	50.0%
	AGCGGAGGAGGAGATATTGA+AGG	-	chr3_1:85443499-85443518	Msa0382690:intron	50.0%
	GCGGAGGAGGAGATATTGAA+GGG	-	chr3_1:85443500-85443519	Msa0382690:intron	50.0%
	GGAGGAGATATTGAAGGGAC+TGG	-	chr3_1:85443505-85443524	Msa0382690:intron	50.0%
	GTGTTCCGGCTGATAGTTCT+TGG	-	chr3_1:85444288-85444307	Msa0382690:intron	50.0%
	ACCGTGAGACTTATCTGGAG+AGG	-	chr3_1:85444442-85444461	Msa0382690:CDS	50.0%
	GCCTCTCCAGATAAGTCTCA+CGG	+	chr3_1:85444446-85444465	None:intergenic	50.0%
	ATCTGGAGAGGCTTGCCATA+AGG	-	chr3_1:85444454-85444473	Msa0382690:CDS	50.0%
	GAGAGGCTTGCCATAAGGTT+TGG	-	chr3_1:85444459-85444478	Msa0382690:CDS	50.0%
	CAAGCCAAGTCCAACAGTGA+AGG	+	chr3_1:85444497-85444516	None:intergenic	50.0%
	CTTCACTGTTGGACTTGGCT+TGG	-	chr3_1:85444495-85444514	Msa0382690:CDS	50.0%
!	TGTTGACTACCCTGTCGACA+AGG	-	chr3_1:85444689-85444708	Msa0382690:intron	50.0%
	CAGCCGAGTTTGCAAAGATG+TGG	-	chr3_1:85444772-85444791	Msa0382690:CDS	50.0%
	TAAGGAGCGACGAGCAATGA+AGG	-	chr3_1:85444896-85444915	Msa0382690:five_prime_UTR	50.0%
	TATGGAAGCCTCTTCCGGCA+TGG	-	chr3_1:85441989-85442008	Msa0382690:CDS	55.0%
	TCAGGGAGTCCTAGAGTCGA+TGG	-	chr3_1:85442558-85442577	Msa0382690:CDS	55.0%
	TGGCCATTGGTGAGAAGAGG+AGG	+	chr3_1:85442729-85442748	None:intergenic	55.0%
	GCTTTCTCAGATGGGCCCAA+AGG	+	chr3_1:85443218-85443237	None:intergenic	55.0%
	TCGACAGGAGCCAACTGTGA+TGG	+	chr3_1:85444594-85444613	None:intergenic	55.0%
	CGTCACGATTCTGCCGACAG+CGG	-	chr3_1:85442050-85442069	Msa0382690:CDS	60.0%
	GTCACGATTCTGCCGACAGC+GGG	-	chr3_1:85442051-85442070	Msa0382690:CDS	60.0%
	TCACGATTCTGCCGACAGCG+GGG	-	chr3_1:85442052-85442071	Msa0382690:CDS	60.0%
	GCTGATGGGAAAAGCGGAGG+AGG	-	chr3_1:85443487-85443506	Msa0382690:intron	60.0%
	GCCTCTTCCGGCATGGTTGC+TGG	-	chr3_1:85441996-85442015	Msa0382690:CDS	65.0%
	GCCAGCAACCATGCCGGAAG+AGG	+	chr3_1:85442000-85442019	None:intergenic	65.0%
	GTGGGAGCCAGCAACCATGC+CGG	+	chr3_1:85442006-85442025	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	85441766	85445060	85441766	ID=Msa0382690;Name=Msa0382690
chr3_1	mRNA	85441766	85445060	85441766	ID=Msa0382690-mRNA-1;Parent=Msa0382690;Name=Msa0382690-mRNA-1;_AED=0.03;_eAED=0.03;_QI=224\|1\|1\|1\|1\|1\|7\|92\|480
chr3_1	exon	85441766	85442254	85441766	ID=Msa0382690-mRNA-1:exon:22387;Parent=Msa0382690-mRNA-1
chr3_1	exon	85442351	85442617	85442351	ID=Msa0382690-mRNA-1:exon:22386;Parent=Msa0382690-mRNA-1
chr3_1	exon	85443275	85443470	85443275	ID=Msa0382690-mRNA-1:exon:22385;Parent=Msa0382690-mRNA-1
chr3_1	exon	85443554	85443665	85443554	ID=Msa0382690-mRNA-1:exon:22384;Parent=Msa0382690-mRNA-1
chr3_1	exon	85444074	85444264	85444074	ID=Msa0382690-mRNA-1:exon:22383;Parent=Msa0382690-mRNA-1
chr3_1	exon	85444355	85444550	85444355	ID=Msa0382690-mRNA-1:exon:22382;Parent=Msa0382690-mRNA-1
chr3_1	exon	85444753	85445060	85444753	ID=Msa0382690-mRNA-1:exon:22381;Parent=Msa0382690-mRNA-1
chr3_1	five_prime_UTR	85444837	85445060	85444837	ID=Msa0382690-mRNA-1:five_prime_utr;Parent=Msa0382690-mRNA-1
chr3_1	CDS	85444753	85444836	85444753	ID=Msa0382690-mRNA-1:cds;Parent=Msa0382690-mRNA-1
chr3_1	CDS	85444355	85444550	85444355	ID=Msa0382690-mRNA-1:cds;Parent=Msa0382690-mRNA-1
chr3_1	CDS	85444074	85444264	85444074	ID=Msa0382690-mRNA-1:cds;Parent=Msa0382690-mRNA-1
chr3_1	CDS	85443554	85443665	85443554	ID=Msa0382690-mRNA-1:cds;Parent=Msa0382690-mRNA-1
chr3_1	CDS	85443275	85443470	85443275	ID=Msa0382690-mRNA-1:cds;Parent=Msa0382690-mRNA-1
chr3_1	CDS	85442351	85442617	85442351	ID=Msa0382690-mRNA-1:cds;Parent=Msa0382690-mRNA-1
chr3_1	CDS	85441858	85442254	85441858	ID=Msa0382690-mRNA-1:cds;Parent=Msa0382690-mRNA-1
chr3_1	three_prime_UTR	85441766	85441857	85441766	ID=Msa0382690-mRNA-1:three_prime_utr;Parent=Msa0382690-mRNA-1

Gene Sequence

>Msa0382690

ATGGAAGCCTCTTCCGGCATGGTTGCTGGCTCCCACAATCGTAACGAGCTTGTTCGTATTCGTCACGATTCTGCCGACAGCGGGCCGAAACCATTGAAGAATTTGAATGGACAAGTCTGTCATATATGTGGTGAGGATGTTGGAACAACACCCACCGGTGATGTGTTTGTTGCTTGTAATGAATGTGGTTACCCTGTTTGTCGAGATTGTTATGAATATGAGCGAAAAGAAGGCAACAAATCTTGTCCTCAATGCAAAACTAGATACAAAAGGCTCAGAGGGAGTCCTAGAGTCGATGGAGATGATGAAGAAGATGATGTTGATGATATCGAGAACGAGTTCAATTATCGACAAGGAAATAATAATAATAATAATAATAAGTCAAGGAGACAGTGGGATGATTCAGACAGATCAGCTTCATCTTCTAGACGCGAATATCAGCAACCTCCTCTTCTCACCAATGGCCAAACTATGTCTGGCGAGATTCCTACACCTGATAATCAATCTGTCCGAACTACTTCTGGTCCTTTGGGCCCATCTGAGAAAGCTCACTCACTTCCCTATATTGATCCAAGGCAACCAGTTCCGGTGAGAATTGTGGATCCATCAAAGGACTTAAACTCATATGGTTTGGGAAATGTTGACTGGAAGGAAAGGGTTGAAGGTTGGAAGCTGAAGCACGAGAAAAATATGGTACAGATGACTGGTAGATATGCTGATGGGAAAAGCGGAGGAGGAGATATTGAAGGGACTGGTTCTAATGGAGAAGAACTTCAAATGGTTGATGATGCTCGACAACCTATGAGTCGGATTGTACCCATTTCTTCATCTCAGCTGACCCCTTATCGTGTTGTCATCGTGTTCCGGCTGATAGTTCTTGGTTTCTTCTTGCAATATCGTGTAACTCACCCGGTAAAAGATGCTTACCCACTGTGGTTGACTTCAGTTATCTGTGAGATTTGGTTTGCATTTTCCTGGATTTTGGATCAGTTTCCAAAATGGTCTCCCATTAACCGTGAGACTTATCTGGAGAGGCTTGCCATAAGATATGATCGTGATGGAGAACCATCACAGTTGGCTCCTGTCGACGTATTTGTCAGTACAGTGGACCCTCTCAAAGAGCCACCTATTGTAACTGCAAACACTGTTTTGTCTATACTCGCTGTTGACTACCCTGTCGACAAGGTTTCTTGCTATGTATCTGATGATGGTTCAGCTATGTTGAGTTTTGAAGCCTTATCTGAAACAGCCGAGTTTGCAAAGATGTGGGTGCCCTTTTGCAAAAAACACAGTATTGAGCCAAGAGCACCTGAATTTTATTTTCTTCAGAAGATTGATTACTTAAAGGACAAGGTTCAACCCTCTTTTGTTAAGGAGCGACGAGCAATGAAGGTTGTTTTTGAAGCATCATGTTTCCATTTCCAGTTCAATATTTATTTCTAG

Protein sequence

>Msa0382690

MEASSGMVAGSHNRNELVRIRHDSADSGPKPLKNLNGQVCHICGEDVGTTPTGDVFVACNECGYPVCRDCYEYERKEGNKSCPQCKTRYKRLRGSPRVDGDDEEDDVDDIENEFNYRQGNNNNNNNKSRRQWDDSDRSASSSRREYQQPPLLTNGQTMSGEIPTPDNQSVRTTSGPLGPSEKAHSLPYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKHEKNMVQMTGRYADGKSGGGDIEGTGSNGEELQMVDDARQPMSRIVPISSSQLTPYRVVIVFRLIVLGFFLQYRVTHPVKDAYPLWLTSVICEIWFAFSWILDQFPKWSPINRETYLERLAIRYDRDGEPSQLAPVDVFVSTVDPLKEPPIVTANTVLSILAVDYPVDKVSCYVSDDGSAMLSFEALSETAEFAKMWVPFCKKHSIEPRAPEFYFLQKIDYLKDKVQPSFVKERRAMKVVFEASCFHFQFNIYF*