AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0049920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0049920 MtrunA17_Chr1g0148321 94.808 1117 23 3 1 1116 1 1083 0.0 2180
Msa0049920 MtrunA17_Chr3g0138791 73.859 1117 257 3 1 1116 1 1083 0.0 1647
Msa0049920 MtrunA17_Chr3g0123951 29.825 342 188 10 108 408 24 354 6.40e-34 134
Msa0049920 MtrunA17_Chr8g0382161 29.524 315 174 7 108 382 24 330 3.06e-32 129
Msa0049920 MtrunA17_Chr3g0119031 29.429 350 210 10 107 447 199 520 4.43e-30 129
Msa0049920 MtrunA17_Chr5g0439971 29.143 350 211 10 107 447 204 525 7.63e-30 128
Msa0049920 MtrunA17_Chr1g0170261 31.119 286 181 8 107 383 201 479 4.35e-29 126
Msa0049920 MtrunA17_Chr6g0458441 29.900 301 168 10 106 383 126 406 5.57e-29 124
Msa0049920 MtrunA17_Chr6g0458421 29.293 297 179 10 106 385 28 310 1.17e-27 119
Msa0049920 MtrunA17_Chr5g0411271 29.293 297 174 11 107 385 154 432 1.21e-26 117
Msa0049920 MtrunA17_Chr4g0074041 28.972 321 202 10 83 386 68 379 2.96e-26 116
Msa0049920 MtrunA17_Chr1g0150541 28.041 296 187 9 106 383 180 467 1.56e-25 114
Msa0049920 MtrunA17_Chr3g0133061 28.525 305 173 11 106 383 583 869 8.40e-25 112
Msa0049920 MtrunA17_Chr6g0458431 26.076 395 234 14 106 472 93 457 1.49e-24 110
Msa0049920 MtrunA17_Chr5g0427301 28.852 305 171 12 106 383 541 826 2.95e-23 107
Msa0049920 MtrunA17_Chr2g0313171 27.907 301 179 11 106 382 463 749 7.55e-23 105
Msa0049920 MtrunA17_Chr2g0312901 27.632 304 191 10 100 383 15 309 1.07e-22 104
Msa0049920 MtrunA17_Chr8g0366721 25.939 293 180 10 107 385 212 481 4.89e-21 98.6
Msa0049920 MtrunA17_Chr5g0412381 27.703 296 183 11 106 382 423 706 2.70e-20 97.4
Msa0049920 MtrunA17_Chr1g0149991 23.919 347 198 11 108 400 182 516 1.26e-16 84.7
Msa0049920 MtrunA17_Chr4g0064671 27.742 155 88 4 252 385 77 228 2.05e-12 68.9
Msa0049920 MtrunA17_Chr7g0255591 31.298 131 85 4 255 383 754 881 1.84e-11 68.6
Msa0049920 MtrunA17_Chr4g0062561 22.712 295 190 10 103 382 249 520 8.19e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0049920 AT3G49600.2 56.926 1119 425 12 1 1115 1 1066 0.0 1188
Msa0049920 AT3G49600.1 56.926 1119 425 12 1 1115 1 1066 0.0 1188
Msa0049920 AT3G49600.3 55.764 1119 417 13 1 1115 1 1045 0.0 1153
Msa0049920 AT2G22310.1 29.712 313 175 8 108 382 24 329 1.36e-31 128
Msa0049920 AT3G11910.4 29.714 350 209 10 107 447 197 518 7.96e-31 132
Msa0049920 AT3G11910.2 29.714 350 209 10 107 447 197 518 7.96e-31 132
Msa0049920 AT3G11910.3 29.714 350 209 10 107 447 198 519 8.10e-31 132
Msa0049920 AT3G11910.1 29.714 350 209 10 107 447 198 519 8.10e-31 132
Msa0049920 AT5G06600.1 29.714 350 210 10 107 447 199 521 1.77e-30 130
Msa0049920 AT5G06600.2 29.714 350 210 10 107 447 198 520 1.80e-30 130
Msa0049920 AT5G06600.3 29.714 350 210 10 107 447 199 521 1.90e-30 130
Msa0049920 AT4G39910.1 28.616 318 177 9 108 382 24 334 3.04e-30 124
Msa0049920 AT5G57990.1 28.125 320 205 9 92 394 91 402 2.08e-28 124
Msa0049920 AT2G22310.3 28.571 301 170 8 120 382 4 297 1.53e-25 109
Msa0049920 AT4G31670.1 29.167 312 189 11 86 379 153 450 4.17e-25 112
Msa0049920 AT1G17110.2 29.010 293 182 9 105 379 440 724 6.77e-25 112
Msa0049920 AT1G17110.3 29.010 293 182 9 105 379 436 720 7.21e-25 112
Msa0049920 AT1G17110.1 29.010 293 182 9 105 379 436 720 7.21e-25 112
Msa0049920 AT5G65450.1 29.293 297 178 11 106 382 328 612 9.74e-24 108
Msa0049920 AT5G65450.2 29.293 297 178 11 106 382 347 631 1.00e-23 108
Msa0049920 AT2G22310.2 28.041 296 168 8 125 382 4 292 1.32e-23 103
Msa0049920 AT2G24640.2 28.428 299 182 12 105 382 2 289 5.16e-23 104
Msa0049920 AT3G14400.1 27.723 303 184 9 106 383 23 315 5.68e-23 105
Msa0049920 AT2G24640.1 28.428 299 182 12 105 382 172 459 6.82e-23 105
Msa0049920 AT4G24560.1 26.599 297 189 10 106 383 541 827 9.13e-21 99.4
Msa0049920 AT5G46740.1 27.425 299 189 9 107 386 163 452 9.54e-19 92.4
Msa0049920 AT4G17895.1 26.689 296 187 8 107 385 176 458 4.52e-18 90.1
Msa0049920 AT5G46740.2 29.717 212 133 6 183 386 40 243 1.63e-16 84.7
Msa0049920 AT2G40930.1 32.117 137 80 4 255 385 769 898 4.50e-12 71.2
Msa0049920 AT2G40930.2 32.117 137 80 4 255 385 769 898 4.50e-12 71.2
Msa0049920 AT4G10590.4 30.282 142 95 3 255 395 748 886 1.10e-11 69.7
Msa0049920 AT4G10590.3 30.282 142 95 3 255 395 748 886 1.10e-11 69.7
Msa0049920 AT4G10590.1 30.282 142 95 3 255 395 748 886 1.10e-11 69.7
Msa0049920 AT4G10590.2 30.282 142 95 3 255 395 748 886 1.10e-11 69.7
Msa0049920 AT4G10570.1 31.818 132 86 3 255 385 749 877 1.52e-11 69.3

Find 251 sgRNAs with CRISPR-Local

Find 661 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTCTTGCCTTGGAAATTT+TGG 0.078415 1_2:+3443275 None:intergenic
CTCATAGAAGTCTTCCATTT+TGG 0.162396 1_2:+3442388 None:intergenic
GCCCTAGTAATGGCAAATTT+TGG 0.167402 1_2:-3434873 Msa0049920:three_prime_UTR
ATCACCACATTTAATGTTTC+AGG 0.169289 1_2:+3438249 None:intergenic
TCATTATCTTGTGCAGTAAT+TGG 0.193512 1_2:+3440996 None:intergenic
CTCACTGTTGAAGAGCTTAA+TGG 0.199425 1_2:-3442311 Msa0049920:CDS
CTTCCTCTTGGATTTCAAAA+TGG 0.232071 1_2:-3438311 Msa0049920:CDS
ACCAGCTGAAAATGATGATA+TGG 0.234152 1_2:-3436194 Msa0049920:CDS
ATACCTAGTGTTGGATGTTT+TGG 0.236867 1_2:-3434903 Msa0049920:three_prime_UTR
TCAGTTGCATTTAAGTAAAA+AGG 0.243254 1_2:-3443415 Msa0049920:CDS
CATGAAGCTTCTTCTGAAAA+TGG 0.265957 1_2:+3441251 None:intergenic
CTCTGAAGCTTCTTCCAAAA+TGG 0.266543 1_2:-3442402 Msa0049920:CDS
GCTCCATCTGAAGCTGATTC+TGG 0.267792 1_2:-3438732 Msa0049920:CDS
TGTTTCTTCAGAAAGGAATA+AGG 0.296369 1_2:-3439684 Msa0049920:CDS
TGTTTGGACTGTCTGATTGA+TGG 0.310376 1_2:-3439859 Msa0049920:CDS
TGATGATATGGGAATCCTTT+GGG 0.320727 1_2:-3436182 Msa0049920:CDS
AGTTCAGCGGGGAATGAAAA+TGG 0.325298 1_2:+3441455 None:intergenic
GACGAACGAATGAATGAGTT+TGG 0.330367 1_2:+3444950 None:intergenic
TGAGCTGTGTAACGAGAAAA+AGG 0.337284 1_2:-3435119 Msa0049920:CDS
GGTTGCTCCAGTGGTTTAAC+AGG 0.343117 1_2:+3440825 None:intergenic
GAAGCCTCCAAGATTGATCT+AGG 0.343119 1_2:+3436318 None:intergenic
CAATCTTTGCAGATACTCCT+TGG 0.344327 1_2:+3437793 None:intergenic
AACAATTGAATGAGAAGAAA+TGG 0.348131 1_2:-3434966 Msa0049920:three_prime_UTR
ATGGGATAAGTTACTGTCTA+AGG 0.355200 1_2:-3440479 Msa0049920:intron
ACTGCATTCAGAGCACTCTT+TGG 0.357896 1_2:+3438548 None:intergenic
ATTACAAAGCCAGTCTGTTC+AGG 0.361510 1_2:-3443750 Msa0049920:CDS
CCTCAATATTTCTGAAGTTC+CGG 0.364596 1_2:+3443909 None:intergenic
ATTTCTTAGTTCCTTCCTCT+TGG 0.365604 1_2:-3438323 Msa0049920:CDS
GACTTCAAATGTTTCATCTC+AGG 0.367963 1_2:-3435056 Msa0049920:CDS
CCATCATATCTGAGAATGAT+TGG 0.370225 1_2:-3437851 Msa0049920:CDS
CCTTATCCCAGTTGGCCAAC+TGG 0.370897 1_2:+3437706 None:intergenic
TTGAACTATCGTTCTTGCCT+TGG 0.374035 1_2:+3443266 None:intergenic
GTCGAGGTAACCTTTGACAC+TGG 0.381143 1_2:+3440523 None:intergenic
GTTTGGACTGTCTGATTGAT+GGG 0.382003 1_2:-3439858 Msa0049920:CDS
TTCCAAAATTTGCCATTACT+AGG 0.382996 1_2:+3434871 None:intergenic
GTTTCTTCAGAAAGGAATAA+GGG 0.383733 1_2:-3439683 Msa0049920:CDS
TTCTCACGAGGACTGCTGTT+TGG 0.384368 1_2:-3439875 Msa0049920:CDS
TGAAAGTTGCATTGGAGAAA+AGG 0.384973 1_2:-3436418 Msa0049920:CDS
CCAAGTGGAACGCGGAAGTC+TGG 0.385243 1_2:-3443672 Msa0049920:CDS
TGTATGTATATATATACTTC+AGG 0.389422 1_2:-3434996 Msa0049920:three_prime_UTR
GATTCACGAAGTTCCGTGTT+TGG 0.390262 1_2:+3443603 None:intergenic
CTTGCACGGGATATTCTTGA+TGG 0.392912 1_2:-3439778 Msa0049920:CDS
GAAAATCAGATACTACAAAA+AGG 0.393670 1_2:-3435340 Msa0049920:CDS
AATCTTTGCAGATACTCCTT+GGG 0.394072 1_2:+3437794 None:intergenic
TCGTGTCAGCAGACACTTAT+CGG 0.397648 1_2:-3439825 Msa0049920:CDS
ATTCACGAAGTTCCGTGTTT+GGG 0.400571 1_2:+3443604 None:intergenic
CAGTTGGCCAACTGGGATAA+GGG 0.403224 1_2:-3437705 Msa0049920:CDS
GTGAGGACCAGTTGGCCAAC+TGG 0.404484 1_2:-3437713 Msa0049920:CDS
GTGTCAGAATTCTTCACAGC+TGG 0.405629 1_2:+3438273 None:intergenic
CCAATCATTCTCAGATATGA+TGG 0.406599 1_2:+3437851 None:intergenic
CCCGCAGGACTCACAAATCT+TGG 0.406645 1_2:-3443570 Msa0049920:CDS
CCAGTTGGCCAACTGGGATA+AGG 0.409175 1_2:-3437706 Msa0049920:CDS
CTTTCCTATGGTTGTACTGC+TGG 0.413935 1_2:+3440910 None:intergenic
ATGATGATATGGGAATCCTT+TGG 0.419564 1_2:-3436183 Msa0049920:CDS
TAGTGACTGGCTTCGTCAAT+GGG 0.420428 1_2:-3440787 Msa0049920:CDS
GGAAATGTTTCTGCGAAGAA+TGG 0.422571 1_2:-3437830 Msa0049920:CDS
ACAACCGGTGTTAGATCAAT+TGG 0.422700 1_2:-3443451 Msa0049920:CDS
TGATGAGCTTGTTACTAACT+TGG 0.424756 1_2:-3441282 Msa0049920:CDS
GATTGAGAAAATTAATGATT+CGG 0.430266 1_2:-3437775 Msa0049920:CDS
AGCTGAAAATTAAGCACATC+AGG 0.432949 1_2:+3442215 None:intergenic
TAAATCTGTTAAGAATGATC+TGG 0.436916 1_2:-3441219 Msa0049920:CDS
GTGGACGTTAACATATTTGC+TGG 0.436987 1_2:-3435277 Msa0049920:CDS
ATAGTGACTGGCTTCGTCAA+TGG 0.442998 1_2:-3440788 Msa0049920:CDS
GACTTCCGCGTTCCACTTGG+AGG 0.443325 1_2:+3443675 None:intergenic
TCCGAATTGCTTCTGTGCAT+TGG 0.444163 1_2:-3443703 Msa0049920:CDS
TCGTTTCTGTTTCTTCAGAA+AGG 0.445401 1_2:-3439691 Msa0049920:CDS
AAAATTTGGTATGCTTAAGA+TGG 0.445793 1_2:+3441075 None:intergenic
TGTAGGAAAATATACAAAAC+AGG 0.446519 1_2:-3443810 Msa0049920:intron
GATTCGGTGAATGCTACATC+TGG 0.447397 1_2:-3437759 Msa0049920:CDS
ACCAATGCACAGAAGCAATT+CGG 0.447609 1_2:+3443702 None:intergenic
ATCAATCTTGGAGGCTTCAA+AGG 0.447974 1_2:-3436313 Msa0049920:CDS
CATGAAAATCGAGATATTGC+TGG 0.451054 1_2:-3435223 Msa0049920:intron
TTGGAGTCTAAATGAAATGT+AGG 0.454424 1_2:+3438567 None:intergenic
GATAAGGGGAATAATGAAAG+TGG 0.455432 1_2:-3437690 Msa0049920:CDS
GGAGGTCCCTAGATCAATCT+TGG 0.456160 1_2:-3436325 Msa0049920:CDS
GTCATGAGAAGTTGTTCAAT+GGG 0.460741 1_2:-3438377 Msa0049920:CDS
AATGAGCAGATCAACGGCTC+GGG 0.465077 1_2:-3443968 Msa0049920:CDS
TTAGCACCAGTTGCTTGCTC+AGG 0.468543 1_2:+3438669 None:intergenic
AATTACACATATATCCTCAT+TGG 0.468861 1_2:+3436362 None:intergenic
ACCATGTAAATCCTTGTGCC+TGG 0.470791 1_2:-3434929 Msa0049920:three_prime_UTR
TCCAAAATTTGCCATTACTA+GGG 0.471190 1_2:+3434872 None:intergenic
CTTATGCCTGAGCAAGCAAC+TGG 0.475627 1_2:-3438675 Msa0049920:CDS
TTGAATGAGAAGAAATGGTT+TGG 0.476781 1_2:-3434961 Msa0049920:three_prime_UTR
CCAGCTGAAAATGATGATAT+GGG 0.477880 1_2:-3436193 Msa0049920:CDS
CCAGACTTCCGCGTTCCACT+TGG 0.478055 1_2:+3443672 None:intergenic
GTTTATTCATATACAAGCAT+TGG 0.479324 1_2:+3443520 None:intergenic
CAGGTTTGTGAAAGTTGCAT+TGG 0.480717 1_2:-3436426 Msa0049920:CDS
AGTCATGAGAAGTTGTTCAA+TGG 0.482782 1_2:-3438378 Msa0049920:CDS
GCAAGCAACTGGTGCTAAGC+GGG 0.487367 1_2:-3438664 Msa0049920:CDS
TGGTCTTGTTGCCCTAGTAA+TGG 0.487747 1_2:-3434883 Msa0049920:three_prime_UTR
ATTATTCCCCTTATCCCAGT+TGG 0.488176 1_2:+3437698 None:intergenic
CCATGTAAATCCTTGTGCCT+GGG 0.492793 1_2:-3434928 Msa0049920:three_prime_UTR
CCACGTCTGAGAATCAGTTC+AGG 0.492988 1_2:+3438023 None:intergenic
ACTGTCTGATTGATGGGGCT+CGG 0.493794 1_2:-3439852 Msa0049920:CDS
ATCATTTAAGCAACTTGCAC+GGG 0.495522 1_2:-3439791 Msa0049920:CDS
TCAATTCTACCTCTTTCCTA+TGG 0.497661 1_2:+3440898 None:intergenic
GAAATGTTTCTGCGAAGAAT+GGG 0.500530 1_2:-3437829 Msa0049920:CDS
GGCAATATGTGAGGACCAGT+TGG 0.509210 1_2:-3437721 Msa0049920:CDS
GGACTTTACCGTGTGAACAT+TGG 0.509591 1_2:+3440545 None:intergenic
TGTCAGAATTCTTCACAGCT+GGG 0.511169 1_2:+3438274 None:intergenic
TCAATCTTGGAGGCTTCAAA+GGG 0.512924 1_2:-3436312 Msa0049920:CDS
CCCAGGCACAAGGATTTACA+TGG 0.514041 1_2:+3434928 None:intergenic
AATGGAAGACTTCTATGAGT+TGG 0.518411 1_2:-3442384 Msa0049920:CDS
TAAGCGGGTGCTTGTTCCCG+AGG 0.518885 1_2:-3438649 Msa0049920:CDS
AGCGACTGTCTTCTAAAGCA+TGG 0.519590 1_2:-3440498 Msa0049920:CDS
ATTCTAATTTCTCTGAAGCA+AGG 0.526792 1_2:-3441193 Msa0049920:CDS
TGGTGCACTGCTCTGTGAAA+AGG 0.526975 1_2:-3438226 Msa0049920:intron
ACTAGATGAAAATGTCTCCA+TGG 0.527335 1_2:+3441118 None:intergenic
CGTGTCAGCAGACACTTATC+GGG 0.527748 1_2:-3439824 Msa0049920:CDS
AATGAGAAGAAATGGTTTGG+TGG 0.528192 1_2:-3434958 Msa0049920:three_prime_UTR
CGTACCGAGGGAGGGTTTCG+TGG 0.528383 1_2:-3435088 Msa0049920:CDS
CCAAGATTTGTGAGTCCTGC+GGG 0.528495 1_2:+3443570 None:intergenic
ATCTGGATCTTGTGAAGAGA+TGG 0.530762 1_2:-3437742 Msa0049920:CDS
ATGTGAACACAGGGCAATGG+TGG 0.532933 1_2:-3441313 Msa0049920:CDS
CGGTAAAGTCCCAGTGTCAA+AGG 0.533850 1_2:-3440533 Msa0049920:CDS
GGGAATAATGAAAGTGGGAA+TGG 0.533939 1_2:-3437684 Msa0049920:CDS
TTCTAATTTCTCTGAAGCAA+GGG 0.534535 1_2:-3441192 Msa0049920:CDS
GAACGCGGAAGTCTGGCATA+TGG 0.537243 1_2:-3443665 Msa0049920:CDS
TTGTGAGATGGCAAAGGGTA+GGG 0.537347 1_2:-3440240 Msa0049920:intron
TGTTTCATCTCAGGTTGTGT+AGG 0.539372 1_2:-3435047 Msa0049920:exon
TCGAGGTAACCTTTGACACT+GGG 0.539858 1_2:+3440524 None:intergenic
CTGGCAAGTATCAAGATATG+AGG 0.540752 1_2:+3440929 None:intergenic
TTTGTAGGTTGCAGCAGTGG+TGG 0.543504 1_2:-3438773 Msa0049920:intron
GTATCATCATCCCCTTGTCT+CGG 0.543714 1_2:+3443931 None:intergenic
CATAAAATACAGTATGGTGG+AGG 0.543820 1_2:-3439907 Msa0049920:intron
CAACTTACAGAAGACTCCCT+TGG 0.543918 1_2:+3437990 None:intergenic
AGACAAGGGGATGATGATAC+CGG 0.544080 1_2:-3443928 Msa0049920:CDS
ATTTGTTGAAACAGATCGAC+GGG 0.548666 1_2:-3436289 Msa0049920:CDS
GCAAGGGTAGCTGACAGTAA+TGG 0.549569 1_2:-3441176 Msa0049920:CDS
TGGTGCATACTAAGTTCAGC+GGG 0.551015 1_2:+3441443 None:intergenic
GCCTGGGGCATACCTAGTGT+TGG 0.553296 1_2:-3434912 Msa0049920:three_prime_UTR
TGAGGACCAGTTGGCCAACT+GGG 0.553449 1_2:-3437712 Msa0049920:CDS
TCACATGAGACACACTTCCC+CGG 0.555529 1_2:+3443235 None:intergenic
AGCACTCACGACTCATTGAA+AGG 0.555742 1_2:-3438049 Msa0049920:CDS
TTCCGCGTTCCACTTGGAGG+CGG 0.556093 1_2:+3443678 None:intergenic
CTTCGTACAATACCTTTGGA+AGG 0.556884 1_2:+3442177 None:intergenic
AGTTTCACAATCTTTACCCA+TGG 0.557454 1_2:-3441135 Msa0049920:CDS
TAGTCGTTCCAAAATTTCCA+AGG 0.557541 1_2:-3443283 Msa0049920:CDS
AAGCGGGTGCTTGTTCCCGA+GGG 0.558588 1_2:-3438648 Msa0049920:CDS
AGTACTACGTGTCTAGATCA+TGG 0.559586 1_2:-3439738 Msa0049920:CDS
GCAATGACAGAAGCAATGTC+AGG 0.560586 1_2:+3443319 None:intergenic
CAGAAAGGAATAAGGGGTGA+TGG 0.560626 1_2:-3439676 Msa0049920:CDS
CATGTAAATCCTTGTGCCTG+GGG 0.560924 1_2:-3434927 Msa0049920:three_prime_UTR
AATCATTTAAGCAACTTGCA+CGG 0.561749 1_2:-3439792 Msa0049920:CDS
CTAGATGAAAATGTCTCCAT+GGG 0.563087 1_2:+3441119 None:intergenic
CACATCAAGGATGTGAACAC+AGG 0.563722 1_2:-3441323 Msa0049920:CDS
GATACACAGCGTACCGAGGG+AGG 0.565981 1_2:-3435097 Msa0049920:CDS
CCGGAACTTCAGAAATATTG+AGG 0.567216 1_2:-3443909 Msa0049920:intron
GAGTTGGAGTTGAATGTCAA+GGG 0.567832 1_2:-3442368 Msa0049920:CDS
CGGTGTTAGATCAATTGGCT+CGG 0.573018 1_2:-3443446 Msa0049920:CDS
AGCAAGCAACTGGTGCTAAG+CGG 0.573541 1_2:-3438665 Msa0049920:CDS
TGTATGGCCAAAATTTCAAG+TGG 0.575617 1_2:-3434822 Msa0049920:three_prime_UTR
GACGGGTTTCTAAACGCTCC+AGG 0.575943 1_2:-3436272 Msa0049920:CDS
GAAACATTAAATGTGGTGAT+TGG 0.576683 1_2:-3438246 Msa0049920:CDS
GCGACTGTCTTCTAAAGCAT+GGG 0.577989 1_2:-3440497 Msa0049920:CDS
TGAAGCTCCTGTTAAACCAC+TGG 0.578029 1_2:-3440832 Msa0049920:CDS
TGTAATTCTTGTACGCGGAA+AGG 0.578271 1_2:-3436346 Msa0049920:CDS
TAAACTTAATTATTCCAATG+AGG 0.578751 1_2:-3436376 Msa0049920:CDS
TCATTACATTGCACACATCA+AGG 0.578762 1_2:-3441336 Msa0049920:CDS
CAATGAGCAGATCAACGGCT+CGG 0.579415 1_2:-3443969 Msa0049920:CDS
GAAGCAATGTCAGGAACTCA+TGG 0.579751 1_2:+3443328 None:intergenic
GAGTGAGGAGCATTGTGAGA+TGG 0.580578 1_2:-3440252 Msa0049920:CDS
TGGAGTCTAAATGAAATGTA+GGG 0.580760 1_2:+3438568 None:intergenic
GATGAGCTTGTTACTAACTT+GGG 0.581232 1_2:-3441281 Msa0049920:CDS
TTTGTGAGTCATGTAAAACA+AGG 0.582663 1_2:-3442274 Msa0049920:CDS
TGACGAAAATACTACACTTG+TGG 0.582828 1_2:-3435296 Msa0049920:CDS
GAGCATTGTGAGATGGCAAA+GGG 0.583069 1_2:-3440245 Msa0049920:CDS
ATCAGCTTCAGATGGAGCAT+CGG 0.583704 1_2:+3438737 None:intergenic
ATTGTGAGATGGCAAAGGGT+AGG 0.583977 1_2:-3440241 Msa0049920:CDS
TTTGCATGGAGGACTCTATG+AGG 0.584858 1_2:-3438506 Msa0049920:intron
GACGTGGTGCTATATTTCCA+AGG 0.585410 1_2:-3438007 Msa0049920:CDS
CTTTGTGGATACTAGGCAGG+TGG 0.586554 1_2:-3437879 Msa0049920:intron
GCAGTACAACCATAGGAAAG+AGG 0.586771 1_2:-3440907 Msa0049920:CDS
GCGCTATGTCTTCCTTCCAA+AGG 0.588885 1_2:-3442189 Msa0049920:intron
AAGCCTCCAAGATTGATCTA+GGG 0.589124 1_2:+3436319 None:intergenic
CTAGGTATGCCCCAGGCACA+AGG 0.590432 1_2:+3434918 None:intergenic
TGAGTTGGAGTTGAATGTCA+AGG 0.591934 1_2:-3442369 Msa0049920:CDS
TATAATACAAGACTCAGCCC+TGG 0.592232 1_2:+3443992 None:intergenic
GGTCCAGAATCAGCTTCAGA+TGG 0.594090 1_2:+3438729 None:intergenic
TGGAGATCAGATTATTGTGA+GGG 0.594741 1_2:-3435257 Msa0049920:CDS
ACAAACTTGGCTTACCCCAA+AGG 0.594910 1_2:+3436167 None:intergenic
TTTGGACTGTCTGATTGATG+GGG 0.595037 1_2:-3439857 Msa0049920:CDS
AGTTGGCCAACTGGGATAAG+GGG 0.595215 1_2:-3437704 Msa0049920:CDS
ACACGACAACCTGAACAGAC+TGG 0.595647 1_2:+3443741 None:intergenic
AATATGTGCAATCTAGAGAG+AGG 0.599323 1_2:+3438343 None:intergenic
GGTGTAGGTTATTAAAACAA+AGG 0.599431 1_2:-3438410 Msa0049920:intron
ATAAGGGGAATAATGAAAGT+GGG 0.600051 1_2:-3437689 Msa0049920:CDS
AGGATGTGAACACAGGGCAA+TGG 0.601400 1_2:-3441316 Msa0049920:CDS
TATATCAATTCAGACTGAGA+TGG 0.603009 1_2:+3441407 None:intergenic
GTAGCTGACAGTAATGGAAG+TGG 0.604191 1_2:-3441170 Msa0049920:CDS
ATATGTGCAATCTAGAGAGA+GGG 0.605170 1_2:+3438344 None:intergenic
GGTCCCTAGATCAATCTTGG+AGG 0.605301 1_2:-3436322 Msa0049920:CDS
GGGCTGAAAATGTTACTCCA+AGG 0.605343 1_2:-3440767 Msa0049920:intron
AGAAGACAGTCGCTTTGTCG+AGG 0.606192 1_2:+3440507 None:intergenic
AAAATAAAAGACCGAGACAA+GGG 0.606853 1_2:-3443942 Msa0049920:CDS
GAATCTGCTAATTCACCCGC+AGG 0.608439 1_2:-3443585 Msa0049920:CDS
AAGGGAACTGCAGCTAATAG+TGG 0.609721 1_2:-3441359 Msa0049920:CDS
CTGGAGATCAGATTATTGTG+AGG 0.610377 1_2:-3435258 Msa0049920:CDS
GATTTGTTGAAACAGATCGA+CGG 0.612924 1_2:-3436290 Msa0049920:CDS
CTTGCCAGCAGTACAACCAT+AGG 0.613925 1_2:-3440914 Msa0049920:CDS
AATTGAGTCGTATCAGTGAG+AGG 0.615704 1_2:-3440881 Msa0049920:CDS
TTCGATCAAGACTTGTCCTG+AGG 0.617792 1_2:-3437655 Msa0049920:intron
AGACCAAAACATCCAACACT+AGG 0.618322 1_2:+3434900 None:intergenic
TTGTGAGTCATGTAAAACAA+GGG 0.618657 1_2:-3442273 Msa0049920:CDS
GATGATATGGGAATCCTTTG+GGG 0.619435 1_2:-3436181 Msa0049920:intron
CCTGAACTGATTCTCAGACG+TGG 0.622525 1_2:-3438023 Msa0049920:CDS
TTTCTTCAGAAAGGAATAAG+GGG 0.623466 1_2:-3439682 Msa0049920:CDS
GGAGCATTGTGAGATGGCAA+AGG 0.623688 1_2:-3440246 Msa0049920:CDS
TCCAACACTAGGTATGCCCC+AGG 0.627453 1_2:+3434911 None:intergenic
ATAAAATACAGTATGGTGGA+GGG 0.629754 1_2:-3439906 Msa0049920:intron
AATTCTTGTACGCGGAAAGG+AGG 0.630595 1_2:-3436343 Msa0049920:CDS
CTTCATAAAATACAGTATGG+TGG 0.632041 1_2:-3439910 Msa0049920:intron
GTATGGCCAAAATTTCAAGT+GGG 0.632694 1_2:-3434821 Msa0049920:three_prime_UTR
TTATACAATGAGCAGATCAA+CGG 0.633018 1_2:-3443974 Msa0049920:exon
TCTTGGCTTTGACCCAAACA+CGG 0.633556 1_2:-3443616 Msa0049920:CDS
TGTGAACACAGGGCAATGGT+GGG 0.634151 1_2:-3441312 Msa0049920:CDS
AAGGATACACAGCGTACCGA+GGG 0.636484 1_2:-3435100 Msa0049920:CDS
TCCAAGATTTGTGAGTCCTG+CGG 0.638956 1_2:+3443569 None:intergenic
ATGAGCAGATCAACGGCTCG+GGG 0.642053 1_2:-3443967 Msa0049920:CDS
TTCCGCCTCCAAGTGGAACG+CGG 0.644073 1_2:-3443680 Msa0049920:CDS
TATGGCCAAAATTTCAAGTG+GGG 0.648080 1_2:-3434820 None:intergenic
CAGTCCTCGTGAGAAAGTGT+TGG 0.651283 1_2:+3439883 None:intergenic
TGTTCCACGAAACCCTCCCT+CGG 0.651998 1_2:+3435084 None:intergenic
GCATTGGTTCCGCCTCCAAG+TGG 0.652496 1_2:-3443687 Msa0049920:CDS
GTGGTGCATACTAAGTTCAG+CGG 0.654954 1_2:+3441442 None:intergenic
ATACACAGCGTACCGAGGGA+GGG 0.655824 1_2:-3435096 Msa0049920:CDS
CGTCTGAGAATCAGTTCAGG+AGG 0.656261 1_2:+3438026 None:intergenic
ACGTGGTGCTATATTTCCAA+GGG 0.657770 1_2:-3438006 Msa0049920:CDS
TGGGGTGCTACTGAAACCCA+AGG 0.657885 1_2:-3437810 Msa0049920:CDS
AAATAAAAGACCGAGACAAG+GGG 0.661443 1_2:-3443941 Msa0049920:CDS
TATGTGCAATCTAGAGAGAG+GGG 0.661724 1_2:+3438345 None:intergenic
ACATCAAGGATGTGAACACA+GGG 0.662633 1_2:-3441322 Msa0049920:CDS
CTATGAAGGTGCTCACAATG+TGG 0.664096 1_2:-3442431 Msa0049920:intron
AAAGGATACACAGCGTACCG+AGG 0.665910 1_2:-3435101 Msa0049920:CDS
GTCAGCTGTTCTGATACACA+AGG 0.666311 1_2:-3441378 Msa0049920:CDS
ATGGCCAAAATTTCAAGTGG+GGG 0.668491 1_2:-3434819 None:intergenic
GAGATGGCTCAGACAATCTG+TGG 0.671343 1_2:+3441423 None:intergenic
ACATCTATCCAATGTTCACA+CGG 0.672493 1_2:-3440553 Msa0049920:CDS
GGACAACTAATAGCTGCTGT+TGG 0.674899 1_2:+3438708 None:intergenic
GCAGCTATTAGTTGTCCACA+TGG 0.675814 1_2:-3438702 Msa0049920:CDS
CACACCTGAAACATTAAATG+TGG 0.675913 1_2:-3438253 Msa0049920:CDS
CTTCTTCTGAAAATGGACAA+CGG 0.680788 1_2:+3441258 None:intergenic
CGAGCCAATTGATCTAACAC+CGG 0.691594 1_2:+3443447 None:intergenic
CATTAAGCTCTTCAACAGTG+AGG 0.699221 1_2:+3442312 None:intergenic
TGAAGAGATGGCAATATGTG+AGG 0.706020 1_2:-3437730 Msa0049920:CDS
AGGGCCAACACTTTCTCACG+AGG 0.708277 1_2:-3439887 Msa0049920:CDS
AAATGTTTCTGCGAAGAATG+GGG 0.715071 1_2:-3437828 Msa0049920:CDS
ATATGTGTAATTCTTGTACG+CGG 0.741407 1_2:-3436351 Msa0049920:CDS
TCAGGCATAAGTTGTCCATG+TGG 0.742403 1_2:+3438687 None:intergenic
TCAGCTGTTCTGATACACAA+GGG 0.748218 1_2:-3441377 Msa0049920:CDS
GGTGCATACTAAGTTCAGCG+GGG 0.797503 1_2:+3441444 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATTTGTAAAAAAAAAAA+AGG - chr1_2:3435491-3435510 Msa0049920:intron 10.0%
!! ATAATAATTAAAACATCATT+TGG + chr1_2:3436976-3436995 None:intergenic 10.0%
!!! ATTTTTTTATAATTGGTAAT+GGG - chr1_2:3439393-3439412 Msa0049920:intron 10.0%
!!! TTGTTTTTTAACTTATCAAA+TGG - chr1_2:3435911-3435930 Msa0049920:intron 15.0%
!!! ATTTTGGTTCAATTTTTTTT+TGG - chr1_2:3437693-3437712 Msa0049920:CDS 15.0%
!!! TTTTGGTTCAATTTTTTTTT+GGG - chr1_2:3437694-3437713 Msa0049920:CDS 15.0%
!! TGAATACATATATCATAAAA+TGG + chr1_2:3438246-3438265 None:intergenic 15.0%
!!! ATTTTTCATATTGATTTAGA+AGG + chr1_2:3439363-3439382 None:intergenic 15.0%
!!! GATTTTTTTATAATTGGTAA+TGG - chr1_2:3439392-3439411 Msa0049920:intron 15.0%
!!! TTTTTTTATAATTGGTAATG+GGG - chr1_2:3439394-3439413 Msa0049920:intron 15.0%
!!! TGTTTTTATTTTAAGCTTTA+TGG - chr1_2:3440152-3440171 Msa0049920:intron 15.0%
!!! GTTTTTATTTTAAGCTTTAT+GGG - chr1_2:3440153-3440172 Msa0049920:intron 15.0%
!!! TTTTTATTTTAAGCTTTATG+GGG - chr1_2:3440154-3440173 Msa0049920:intron 15.0%
!! TAAACTTCATATAAATTAAG+AGG + chr1_2:3442291-3442310 None:intergenic 15.0%
!! TCTTAATTTATATGAAGTTT+AGG - chr1_2:3442290-3442309 Msa0049920:CDS 15.0%
!! CTTAATTTATATGAAGTTTA+GGG - chr1_2:3442291-3442310 Msa0049920:CDS 15.0%
!! AAAAATTAACTGAAATAAGT+TGG + chr1_2:3443201-3443220 None:intergenic 15.0%
!! TATTCTTGAACTAAATTTAT+TGG - chr1_2:3443243-3443262 Msa0049920:CDS 15.0%
!!! TTATTTTGTAGTTTAAATGT+TGG - chr1_2:3443639-3443658 Msa0049920:CDS 15.0%
!!! TAATTTTTTATTTCCATATC+TGG - chr1_2:3444388-3444407 Msa0049920:intron 15.0%
!!! TAGATATAGCTTGTTTATTT+TGG - chr1_2:3435638-3435657 Msa0049920:intron 20.0%
!!! AGATATAGCTTGTTTATTTT+GGG - chr1_2:3435639-3435658 Msa0049920:intron 20.0%
!! TGTAATTAGATTTGAGTAAT+GGG - chr1_2:3435662-3435681 Msa0049920:intron 20.0%
!! AATGCAATAAGCTAAAAAAA+TGG + chr1_2:3436610-3436629 None:intergenic 20.0%
!! TTGCACAAAAAATAATTCAA+GGG + chr1_2:3436935-3436954 None:intergenic 20.0%
!! TTTGCACAAAAAATAATTCA+AGG + chr1_2:3436936-3436955 None:intergenic 20.0%
!! GATAATATAATTATCCTTAC+TGG - chr1_2:3437052-3437071 Msa0049920:intron 20.0%
!!! TCATTGTTTACTTCATATTT+TGG - chr1_2:3437677-3437696 Msa0049920:CDS 20.0%
!!! TTTGGTTCAATTTTTTTTTG+GGG - chr1_2:3437695-3437714 Msa0049920:CDS 20.0%
!!! TCTTTATGTAATTTGATTTG+AGG + chr1_2:3437874-3437893 None:intergenic 20.0%
!! TCACTATAAATCCAAAAATA+CGG + chr1_2:3438970-3438989 None:intergenic 20.0%
!!! TGTTATATTTTATTTGTGTG+TGG - chr1_2:3439075-3439094 Msa0049920:intron 20.0%
!!! GGTTATTTCACTTAATTTAT+GGG - chr1_2:3439156-3439175 Msa0049920:intron 20.0%
!!! GCTTGAGATTTTTTTATAAT+TGG - chr1_2:3439386-3439405 Msa0049920:intron 20.0%
!!! TTTATGCTGTAGTTTTTTTT+TGG - chr1_2:3439651-3439670 Msa0049920:intron 20.0%
!!! TTATGCTGTAGTTTTTTTTT+GGG - chr1_2:3439652-3439671 Msa0049920:intron 20.0%
!!! TATTCCATTTTCTATTATTC+TGG - chr1_2:3440125-3440144 Msa0049920:intron 20.0%
!! ATTTCCAGAATAATAGAAAA+TGG + chr1_2:3440132-3440151 None:intergenic 20.0%
!!! CTAGCTATAAATTTTCTTAT+GGG + chr1_2:3440577-3440596 None:intergenic 20.0%
!!! ACTAGCTATAAATTTTCTTA+TGG + chr1_2:3440578-3440597 None:intergenic 20.0%
!! AAAAATCAGAACAAATAGTT+AGG + chr1_2:3440895-3440914 None:intergenic 20.0%
!!! CAAATTAAATTCTGTTTTCA+TGG - chr1_2:3441340-3441359 Msa0049920:CDS 20.0%
!! GATTGAGAAAATTAATGATT+CGG - chr1_2:3441996-3442015 Msa0049920:intron 20.0%
!! TTAGCTTCATATAAATTAAG+AGG + chr1_2:3442410-3442429 None:intergenic 20.0%
!! TCTTAATTTATATGAAGCTA+AGG - chr1_2:3442409-3442428 Msa0049920:CDS 20.0%
!! CTTAATTTATATGAAGCTAA+GGG - chr1_2:3442410-3442429 Msa0049920:CDS 20.0%
!! TTATAGATTATGGCTTATAA+CGG - chr1_2:3442460-3442479 Msa0049920:intron 20.0%
!! TAGGAAAATTAGAAAAATCA+AGG + chr1_2:3442922-3442941 None:intergenic 20.0%
!!! TTTAGTTCAAGAATATACAA+AGG + chr1_2:3443238-3443257 None:intergenic 20.0%
!! TAAACTTAATTATTCCAATG+AGG - chr1_2:3443395-3443414 Msa0049920:CDS 20.0%
!!! AGAATTTTCACAAAATTCAT+TGG + chr1_2:3443836-3443855 None:intergenic 20.0%
!! TCATGTCATCATATAATAAA+AGG - chr1_2:3444019-3444038 Msa0049920:intron 20.0%
!! CATGTCATCATATAATAAAA+GGG - chr1_2:3444020-3444039 Msa0049920:intron 20.0%
!!! TGTAATTTTGCTTAATCTAA+CGG + chr1_2:3444102-3444121 None:intergenic 20.0%
!! TTATTATTCATTGTCCATAT+TGG - chr1_2:3444127-3444146 Msa0049920:intron 20.0%
!! TGTATGTATATATATACTTC+AGG - chr1_2:3444775-3444794 Msa0049920:intron 20.0%
!!! TTATATCCAGATTTTATGTA+TGG - chr1_2:3444933-3444952 Msa0049920:five_prime_UTR 20.0%
!! ATTTGCTGATTGAAATTTCT+AGG - chr1_2:3435038-3435057 Msa0049920:exon 25.0%
!! TTTGCTGATTGAAATTTCTA+GGG - chr1_2:3435039-3435058 Msa0049920:exon 25.0%
!! CATTTACTTGTGTCATTAAA+TGG + chr1_2:3435266-3435285 None:intergenic 25.0%
! GTGTAATTAGATTTGAGTAA+TGG - chr1_2:3435661-3435680 Msa0049920:intron 25.0%
!!! TGCTTTTTTTTTTCTTTTCC+AGG - chr1_2:3435761-3435780 Msa0049920:intron 25.0%
!!! GCTTTTTTTTTTCTTTTCCA+GGG - chr1_2:3435762-3435781 Msa0049920:intron 25.0%
! CAAATGGAATTAGAACTTAT+TGG - chr1_2:3435927-3435946 Msa0049920:intron 25.0%
! TGTAGGAAAATATACAAAAC+AGG - chr1_2:3435961-3435980 Msa0049920:intron 25.0%
! GTTTATTCATATACAAGCAT+TGG + chr1_2:3436254-3436273 None:intergenic 25.0%
! TCAGTTGCATTTAAGTAAAA+AGG - chr1_2:3436356-3436375 Msa0049920:CDS 25.0%
! ATTATAAATCTCTGTCTTTG+TGG - chr1_2:3436627-3436646 Msa0049920:intron 25.0%
! TTATAAATCTCTGTCTTTGT+GGG - chr1_2:3436628-3436647 Msa0049920:intron 25.0%
! TCACATATGATAGAACATTA+TGG - chr1_2:3436689-3436708 Msa0049920:intron 25.0%
! AGTAAACAATGAAAAACACA+AGG + chr1_2:3437669-3437688 None:intergenic 25.0%
! ATACTCCAGTATATATATTC+TGG - chr1_2:3437756-3437775 Msa0049920:CDS 25.0%
! TAAGTCCAGAATATATATAC+TGG + chr1_2:3437764-3437783 None:intergenic 25.0%
! AAAATTAGATATCCTCTTTG+TGG - chr1_2:3437785-3437804 Msa0049920:CDS 25.0%
!! AAAAAAAACTGACAGTTTTC+AGG + chr1_2:3437825-3437844 None:intergenic 25.0%
! ACTGTTCAAATCAAATATCT+TGG - chr1_2:3437914-3437933 Msa0049920:intron 25.0%
!! GAAAGAGAAAGAACTTTTAA+CGG - chr1_2:3438030-3438049 Msa0049920:CDS 25.0%
!! AGTTTTGCCAAGTAAAATAA+TGG + chr1_2:3438072-3438091 None:intergenic 25.0%
!!! TCATTTTATTTTGTTTCCTC+TGG - chr1_2:3438263-3438282 Msa0049920:CDS 25.0%
! TAAATCTGTTAAGAATGATC+TGG - chr1_2:3438552-3438571 Msa0049920:CDS 25.0%
! AAAATTTGGTATGCTTAAGA+TGG + chr1_2:3438699-3438718 None:intergenic 25.0%
!!! ACCAAATTTTTTAGTGAGAA+CGG - chr1_2:3438709-3438728 Msa0049920:CDS 25.0%
!!! ATTTTTGGATTTATAGTGAC+TGG - chr1_2:3438971-3438990 Msa0049920:intron 25.0%
!! GGGTTATTTCACTTAATTTA+TGG - chr1_2:3439155-3439174 Msa0049920:intron 25.0%
!!! ATGATTCCATTTTTTGATCT+TGG - chr1_2:3439333-3439352 Msa0049920:intron 25.0%
!! TTCTATTCTAAGTATTGTGA+TGG - chr1_2:3439458-3439477 Msa0049920:intron 25.0%
! CTCACTCTGATAAAAAAAAA+AGG + chr1_2:3439506-3439525 None:intergenic 25.0%
!!! CTTTTTTTTTTATCAGAGTG+AGG - chr1_2:3439504-3439523 Msa0049920:intron 25.0%
! ATTAGCAACAATGACATTAT+AGG + chr1_2:3439813-3439832 None:intergenic 25.0%
! ATGCTTCATAAAATACAGTA+TGG - chr1_2:3439858-3439877 Msa0049920:CDS 25.0%
! AAAGCTAATAACAAAACAGA+AGG - chr1_2:3440251-3440270 Msa0049920:CDS 25.0%
! AAGCTAATAACAAAACAGAA+GGG - chr1_2:3440252-3440271 Msa0049920:CDS 25.0%
! AAAATTGCGTTGTATTATTG+TGG - chr1_2:3440370-3440389 Msa0049920:intron 25.0%
! CTATACTAAACTAAACTAAC+TGG - chr1_2:3440481-3440500 Msa0049920:CDS 25.0%
!! CTATAAATTTTCTTATGGGT+GGG + chr1_2:3440573-3440592 None:intergenic 25.0%
! AAGAAAATTTATAGCTAGTG+AGG - chr1_2:3440579-3440598 Msa0049920:intron 25.0%
! AGAAAATTTATAGCTAGTGA+GGG - chr1_2:3440580-3440599 Msa0049920:intron 25.0%
! ATGATACCATATTAGGTATT+GGG + chr1_2:3440693-3440712 None:intergenic 25.0%
! AATGATACCATATTAGGTAT+TGG + chr1_2:3440694-3440713 None:intergenic 25.0%
! ATAGGAAATGATACCATATT+AGG + chr1_2:3440700-3440719 None:intergenic 25.0%
! ATTTCCTATCCTAAATCTAT+TGG - chr1_2:3440711-3440730 Msa0049920:intron 25.0%
! TTTCCTATCCTAAATCTATT+GGG - chr1_2:3440712-3440731 Msa0049920:intron 25.0%
!!! AAATAGTTAGGTTTTGGAAT+GGG + chr1_2:3440883-3440902 None:intergenic 25.0%
! AAAAGTAAACTCAGATCAAA+AGG + chr1_2:3440981-3441000 None:intergenic 25.0%
! TCAAGCATAGAAAAATGAAA+TGG + chr1_2:3441625-3441644 None:intergenic 25.0%
! ATGATATTCAAAATGACGAA+GGG + chr1_2:3441821-3441840 None:intergenic 25.0%
! AATGATATTCAAAATGACGA+AGG + chr1_2:3441822-3441841 None:intergenic 25.0%
!! ATTCTAATTTCTGAAAGACT+TGG + chr1_2:3442225-3442244 None:intergenic 25.0%
! ATTAGACAACTAATCCTTTA+TGG - chr1_2:3442260-3442279 Msa0049920:CDS 25.0%
! ATTAAGAGGAAATACCATAA+AGG + chr1_2:3442277-3442296 None:intergenic 25.0%
! ATTAGACAACTAATCCTTTA+TGG - chr1_2:3442260-3442279 Msa0049920:CDS 25.0%
!! ATAAGCTAGCTTATAGATTA+TGG - chr1_2:3442450-3442469 Msa0049920:intron 25.0%
! ATCTTTAGCATTACTCATAA+CGG - chr1_2:3442662-3442681 Msa0049920:intron 25.0%
! ATGTGATGAAAATAGGAAAT+AGG + chr1_2:3442941-3442960 None:intergenic 25.0%
!!! TAACTGAAATAAGTTGGTAA+TGG + chr1_2:3443195-3443214 None:intergenic 25.0%
! CAAGTTTGTATTCTCTTTAT+AGG - chr1_2:3443266-3443285 Msa0049920:CDS 25.0%
! AATTACACATATATCCTCAT+TGG + chr1_2:3443412-3443431 None:intergenic 25.0%
! ATATCAATACAGAACAAACT+TGG + chr1_2:3443620-3443639 None:intergenic 25.0%
! CTAACTTTATGTGGTTAAAA+TGG - chr1_2:3443666-3443685 Msa0049920:CDS 25.0%
! ACTTGTAGTAGACATAAATT+AGG - chr1_2:3444257-3444276 Msa0049920:intron 25.0%
! CTTGTAGTAGACATAAATTA+GGG - chr1_2:3444258-3444277 Msa0049920:intron 25.0%
! GAAAATCAGATACTACAAAA+AGG - chr1_2:3444431-3444450 Msa0049920:intron 25.0%
! AACAATTGAATGAGAAGAAA+TGG - chr1_2:3444805-3444824 Msa0049920:intron 25.0%
! ATTTTCACAAGTTCACTCTA+TGG + chr1_2:3435154-3435173 None:intergenic 30.0%
TTATACAATGAGCAGATCAA+CGG - chr1_2:3435797-3435816 Msa0049920:intron 30.0%
AAAAATAAAAGACCGAGACA+AGG - chr1_2:3435828-3435847 Msa0049920:intron 30.0%
AAAATAAAAGACCGAGACAA+GGG - chr1_2:3435829-3435848 Msa0049920:intron 30.0%
! CAGAAATATTGAGGTACTAT+AGG - chr1_2:3435871-3435890 Msa0049920:intron 30.0%
TATTGGTACTTTCTTTGTGT+AGG - chr1_2:3435944-3435963 Msa0049920:intron 30.0%
!!! TCTGATTTTGTTGATAGTCT+TGG - chr1_2:3436138-3436157 Msa0049920:intron 30.0%
!! ATGAATAAACGTTTTCGAGA+AGG - chr1_2:3436264-3436283 Msa0049920:CDS 30.0%
!! AGATATTTTTCAGCAACAAC+CGG - chr1_2:3436305-3436324 Msa0049920:CDS 30.0%
TTCTCCATTTGTAAAAACGT+TGG - chr1_2:3436392-3436411 Msa0049920:CDS 30.0%
! AACTCCAACGTTTTTACAAA+TGG + chr1_2:3436399-3436418 None:intergenic 30.0%
ATTTGTAAAAACGTTGGAGT+TGG - chr1_2:3436398-3436417 Msa0049920:CDS 30.0%
TATAAATCTCTGTCTTTGTG+GGG - chr1_2:3436629-3436648 Msa0049920:intron 30.0%
!!! GTTTTATTTGTTACAGACAC+TGG + chr1_2:3436884-3436903 None:intergenic 30.0%
! TTTTGTGCTGAATTAACGTT+TGG - chr1_2:3436995-3437014 Msa0049920:intron 30.0%
AACACAAACACTTCAAGAAA+AGG + chr1_2:3437254-3437273 None:intergenic 30.0%
! TTGAAGTGTTTGTGTTTCAT+TGG - chr1_2:3437258-3437277 Msa0049920:intron 30.0%
! ATTTTCCCACTTTACTATGA+AGG - chr1_2:3437326-3437345 Msa0049920:intron 30.0%
TTTGTGAGTCATGTAAAACA+AGG - chr1_2:3437497-3437516 Msa0049920:intron 30.0%
TTGTGAGTCATGTAAAACAA+GGG - chr1_2:3437498-3437517 Msa0049920:intron 30.0%
TTTAACGGTTATACAGAAGA+AGG - chr1_2:3438045-3438064 Msa0049920:CDS 30.0%
!! AGAAGGACCATTATTTTACT+TGG - chr1_2:3438062-3438081 Msa0049920:intron 30.0%
! TTTTACTTGGCAAAACTGTT+TGG - chr1_2:3438075-3438094 Msa0049920:intron 30.0%
!! CAAAACTGTTTGGTGTATTA+TGG - chr1_2:3438085-3438104 Msa0049920:intron 30.0%
TTGGTGTATTATGGCTAATT+TGG - chr1_2:3438094-3438113 Msa0049920:intron 30.0%
!!! TACATGCTTTTTCTTTCTCT+GGG - chr1_2:3438174-3438193 Msa0049920:intron 30.0%
TATATCAATTCAGACTGAGA+TGG + chr1_2:3438367-3438386 None:intergenic 30.0%
!! ATTCTAATTTCTCTGAAGCA+AGG - chr1_2:3438578-3438597 Msa0049920:CDS 30.0%
!! TTCTAATTTCTCTGAAGCAA+GGG - chr1_2:3438579-3438598 Msa0049920:CDS 30.0%
!!! CCAAATTTTTTAGTGAGAAC+GGG - chr1_2:3438710-3438729 Msa0049920:CDS 30.0%
!!! CAAATTTTTTAGTGAGAACG+GGG - chr1_2:3438711-3438730 Msa0049920:CDS 30.0%
!!! AAATTTTTTAGTGAGAACGG+GGG - chr1_2:3438712-3438731 Msa0049920:CDS 30.0%
TCATTATCTTGTGCAGTAAT+TGG + chr1_2:3438778-3438797 None:intergenic 30.0%
ATCTCTTCACAAAAATGAGA+AGG + chr1_2:3438808-3438827 None:intergenic 30.0%
GCATATGCTTTATGTATTCT+TGG - chr1_2:3439032-3439051 Msa0049920:intron 30.0%
! ATTCCTTGTATCATTTGCTA+GGG - chr1_2:3439130-3439149 Msa0049920:intron 30.0%
!! AGTATTGTGATGGATAATAG+TGG - chr1_2:3439468-3439487 Msa0049920:intron 30.0%
!! CTGTATTTTATGAAGCATCA+AGG + chr1_2:3439856-3439875 None:intergenic 30.0%
CTTCATAAAATACAGTATGG+TGG - chr1_2:3439861-3439880 Msa0049920:CDS 30.0%
! ATAAAATACAGTATGGTGGA+GGG - chr1_2:3439865-3439884 Msa0049920:CDS 30.0%
AATCATTTAAGCAACTTGCA+CGG - chr1_2:3439979-3439998 Msa0049920:intron 30.0%
TGTTTCTTCAGAAAGGAATA+AGG - chr1_2:3440087-3440106 Msa0049920:intron 30.0%
GTTTCTTCAGAAAGGAATAA+GGG - chr1_2:3440088-3440107 Msa0049920:intron 30.0%
TTTCTTCAGAAAGGAATAAG+GGG - chr1_2:3440089-3440108 Msa0049920:intron 30.0%
TCTCAGATCATACATAATAC+TGG + chr1_2:3440180-3440199 None:intergenic 30.0%
! GTATAAGCATTGTCTTGTAT+TGG + chr1_2:3440306-3440325 None:intergenic 30.0%
TACAAGACAATGCTTATACT+AGG - chr1_2:3440307-3440326 Msa0049920:intron 30.0%
! TGATAGTGTGTTTGTTTAGT+TGG + chr1_2:3440510-3440529 None:intergenic 30.0%
! GCTATAAATTTTCTTATGGG+TGG + chr1_2:3440574-3440593 None:intergenic 30.0%
GAAAATTTATAGCTAGTGAG+GGG - chr1_2:3440581-3440600 Msa0049920:intron 30.0%
! TGATACCATATTAGGTATTG+GGG + chr1_2:3440692-3440711 None:intergenic 30.0%
!!! AGCTAAATAGTGGTTTTAAG+TGG - chr1_2:3440812-3440831 Msa0049920:CDS 30.0%
!!! TAAATAGTGGTTTTAAGTGG+TGG - chr1_2:3440815-3440834 Msa0049920:CDS 30.0%
!!! AAATAGTGGTTTTAAGTGGT+GGG - chr1_2:3440816-3440835 Msa0049920:CDS 30.0%
!!! CTTAGAAGTTAGTTTTGCAA+GGG - chr1_2:3440848-3440867 Msa0049920:CDS 30.0%
!!! CAAATAGTTAGGTTTTGGAA+TGG + chr1_2:3440884-3440903 None:intergenic 30.0%
! CAGAACAAATAGTTAGGTTT+TGG + chr1_2:3440889-3440908 None:intergenic 30.0%
!! TGATCTGAGTTTACTTTTGT+AGG - chr1_2:3440983-3441002 Msa0049920:CDS 30.0%
!! AAGATCATTTTTCACAGAAG+TGG + chr1_2:3441175-3441194 None:intergenic 30.0%
TTCTGTGAAAAATGATCTTC+TGG - chr1_2:3441176-3441195 Msa0049920:CDS 30.0%
TGGAGTCTAAATGAAATGTA+GGG + chr1_2:3441206-3441225 None:intergenic 30.0%
TTGGAGTCTAAATGAAATGT+AGG + chr1_2:3441207-3441226 None:intergenic 30.0%
!! ATTATCTGAAGTGTTTTGCA+TGG - chr1_2:3441251-3441270 Msa0049920:CDS 30.0%
! AAATTCTGTTTTCATGGTGT+AGG - chr1_2:3441346-3441365 Msa0049920:CDS 30.0%
GGTGTAGGTTATTAAAACAA+AGG - chr1_2:3441361-3441380 Msa0049920:CDS 30.0%
ATCACCACATTTAATGTTTC+AGG + chr1_2:3441525-3441544 None:intergenic 30.0%
GAAACATTAAATGTGGTGAT+TGG - chr1_2:3441525-3441544 Msa0049920:intron 30.0%
GATCTAAATCTGCAACTAAA+TGG + chr1_2:3441586-3441605 None:intergenic 30.0%
ATAAGGGGAATAATGAAAGT+GGG - chr1_2:3442082-3442101 Msa0049920:intron 30.0%
ATTAAGAGGAAATGCCATAA+AGG + chr1_2:3442396-3442415 None:intergenic 30.0%
GCTATAAGCACATAATGAAA+AGG + chr1_2:3442729-3442748 None:intergenic 30.0%
TGTTAGCTGATAGCTTATAA+CGG + chr1_2:3442813-3442832 None:intergenic 30.0%
CTCTGTTTGGTAAAAAATAG+CGG + chr1_2:3442853-3442872 None:intergenic 30.0%
GAAGATAAGCATGAACATTT+AGG + chr1_2:3442876-3442895 None:intergenic 30.0%
TATAACTTCTCAAGTACAAC+TGG + chr1_2:3442898-3442917 None:intergenic 30.0%
ACTATGCATGTGATGAAAAT+AGG + chr1_2:3442948-3442967 None:intergenic 30.0%
!! GTTGGTAATGGAATTTATGT+GGG + chr1_2:3443183-3443202 None:intergenic 30.0%
!! AGTTGGTAATGGAATTTATG+TGG + chr1_2:3443184-3443203 None:intergenic 30.0%
ATATGTGTAATTCTTGTACG+CGG - chr1_2:3443420-3443439 Msa0049920:CDS 30.0%
TTTGTAGTTTAAATGTTGGC+TGG - chr1_2:3443643-3443662 Msa0049920:CDS 30.0%
TTTATGTGGTTAAAATGGTG+TGG - chr1_2:3443671-3443690 Msa0049920:CDS 30.0%
!! ATGCTTGTTGATTCTTGAAT+GGG - chr1_2:3443776-3443795 Msa0049920:CDS 30.0%
! TCACAAAATTCATTGGTTGT+TGG + chr1_2:3443829-3443848 None:intergenic 30.0%
GCACATACAATATTGCTAAA+TGG - chr1_2:3443883-3443902 Msa0049920:intron 30.0%
TTGCTAAATGGAGCTTATAT+TGG - chr1_2:3443895-3443914 Msa0049920:intron 30.0%
TAAATGGAGCTTATATTGGT+AGG - chr1_2:3443899-3443918 Msa0049920:intron 30.0%
!! TGGTAGGTTATTGTTACTTT+AGG - chr1_2:3443915-3443934 Msa0049920:CDS 30.0%
!! GGTAGGTTATTGTTACTTTA+GGG - chr1_2:3443916-3443935 Msa0049920:CDS 30.0%
CTTATAGATTTAGCAATCAG+GGG + chr1_2:3443964-3443983 None:intergenic 30.0%
CCTTATAGATTTAGCAATCA+GGG + chr1_2:3443965-3443984 None:intergenic 30.0%
TCTATAAGGCTCTTAAACAT+AGG - chr1_2:3443976-3443995 Msa0049920:exon 30.0%
ATTATATGATGACATGAAGC+TGG + chr1_2:3444016-3444035 None:intergenic 30.0%
ATAATAAAAGGGCAGATTGT+AGG - chr1_2:3444031-3444050 Msa0049920:intron 30.0%
TAATAAAAGGGCAGATTGTA+GGG - chr1_2:3444032-3444051 Msa0049920:intron 30.0%
!!! AATCTAACGGTTTTAGAATG+TGG + chr1_2:3444089-3444108 None:intergenic 30.0%
TGATAAACTGAAAATAGACG+TGG - chr1_2:3444287-3444306 Msa0049920:intron 30.0%
TGTTCATTTCTGTTCATAAG+AGG + chr1_2:3444614-3444633 None:intergenic 30.0%
AGATGATACCAATGAAAAAG+TGG + chr1_2:3444752-3444771 None:intergenic 30.0%
TTGAATGAGAAGAAATGGTT+TGG - chr1_2:3444810-3444829 Msa0049920:intron 30.0%
TCCAAAATTTGCCATTACTA+GGG + chr1_2:3444902-3444921 None:intergenic 30.0%
TTCCAAAATTTGCCATTACT+AGG + chr1_2:3444903-3444922 None:intergenic 30.0%
! TTTTGGCCATACATAAAATC+TGG + chr1_2:3444942-3444961 None:intergenic 30.0%
! AGTTTAGGCCCTATATTTTG+AGG - chr1_2:3435375-3435394 Msa0049920:intron 35.0%
!! GTTTAGGCCCTATATTTTGA+GGG - chr1_2:3435376-3435395 Msa0049920:intron 35.0%
!! TTTAGGCCCTATATTTTGAG+GGG - chr1_2:3435377-3435396 Msa0049920:intron 35.0%
TACATGACACTCAAAATCTC+AGG - chr1_2:3435527-3435546 Msa0049920:intron 35.0%
ACATGACACTCAAAATCTCA+GGG - chr1_2:3435528-3435547 Msa0049920:intron 35.0%
!! TTAGATTTGAGTAATGGGTG+TGG - chr1_2:3435667-3435686 Msa0049920:intron 35.0%
AAATAAAAGACCGAGACAAG+GGG - chr1_2:3435830-3435849 Msa0049920:intron 35.0%
!! CCTCAATATTTCTGAAGTTC+CGG + chr1_2:3435865-3435884 None:intergenic 35.0%
GGTTGTTGCTGAAAAATATC+TGG + chr1_2:3436306-3436325 None:intergenic 35.0%
!!! TGGAAATTTTGGAACGACTA+AGG + chr1_2:3436488-3436507 None:intergenic 35.0%
TAGTCGTTCCAAAATTTCCA+AGG - chr1_2:3436488-3436507 Msa0049920:intron 35.0%
! CGATAGTTCAAGATCTTTTC+CGG - chr1_2:3436517-3436536 Msa0049920:intron 35.0%
! GATAGTTCAAGATCTTTTCC+GGG - chr1_2:3436518-3436537 Msa0049920:intron 35.0%
! ATAGTTCAAGATCTTTTCCG+GGG - chr1_2:3436519-3436538 Msa0049920:intron 35.0%
GTGACAACGTAAGAAATCAT+TGG - chr1_2:3436555-3436574 Msa0049920:intron 35.0%
TACTTGAGTATGTAGTGAAG+AGG + chr1_2:3436823-3436842 None:intergenic 35.0%
AAGATAACACCTCTGTTTGT+TGG - chr1_2:3436906-3436925 Msa0049920:intron 35.0%
AGATAACACCTCTGTTTGTT+GGG - chr1_2:3436907-3436926 Msa0049920:intron 35.0%
! GATCAAAAGTTAAGAAGCAC+AGG - chr1_2:3437101-3437120 Msa0049920:intron 35.0%
! CTCATAGAAGTCTTCCATTT+TGG + chr1_2:3437386-3437405 None:intergenic 35.0%
AATGGAAGACTTCTATGAGT+TGG - chr1_2:3437387-3437406 Msa0049920:intron 35.0%
AGCTGAAAATTAAGCACATC+AGG + chr1_2:3437559-3437578 None:intergenic 35.0%
CAAACTTCGTACAATACCTT+TGG + chr1_2:3437601-3437620 None:intergenic 35.0%
!!! CTACATGCTTTTTCTTTCTC+TGG - chr1_2:3438173-3438192 Msa0049920:intron 35.0%
TCATTACATTGCACACATCA+AGG - chr1_2:3438435-3438454 Msa0049920:intron 35.0%
!! TGATGAGCTTGTTACTAACT+TGG - chr1_2:3438489-3438508 Msa0049920:intron 35.0%
!! GATGAGCTTGTTACTAACTT+GGG - chr1_2:3438490-3438509 Msa0049920:intron 35.0%
! CTTCTTCTGAAAATGGACAA+CGG + chr1_2:3438516-3438535 None:intergenic 35.0%
! CATGAAGCTTCTTCTGAAAA+TGG + chr1_2:3438523-3438542 None:intergenic 35.0%
AGTTTCACAATCTTTACCCA+TGG - chr1_2:3438636-3438655 Msa0049920:CDS 35.0%
CTAGATGAAAATGTCTCCAT+GGG + chr1_2:3438655-3438674 None:intergenic 35.0%
ACTAGATGAAAATGTCTCCA+TGG + chr1_2:3438656-3438675 None:intergenic 35.0%
CCCGTTCTCACTAAAAAATT+TGG + chr1_2:3438713-3438732 None:intergenic 35.0%
TCAATTCTACCTCTTTCCTA+TGG + chr1_2:3438876-3438895 None:intergenic 35.0%
TAAAGCATATGCACTAACCT+TGG + chr1_2:3439024-3439043 None:intergenic 35.0%
ACAAACTATTGATGTGCTCT+TGG + chr1_2:3439058-3439077 None:intergenic 35.0%
CATTCCTTGTATCATTTGCT+AGG - chr1_2:3439129-3439148 Msa0049920:intron 35.0%
! TTGTATCATTTGCTAGGGTA+GGG - chr1_2:3439135-3439154 Msa0049920:intron 35.0%
ACATCTATCCAATGTTCACA+CGG - chr1_2:3439218-3439237 Msa0049920:intron 35.0%
ATGGGATAAGTTACTGTCTA+AGG - chr1_2:3439292-3439311 Msa0049920:intron 35.0%
ACGAATATTCTTTGTAACGC+AGG + chr1_2:3439594-3439613 None:intergenic 35.0%
!!! AGGGTAACAGTTTTGGATAT+TGG + chr1_2:3439619-3439638 None:intergenic 35.0%
CATAAAATACAGTATGGTGG+AGG - chr1_2:3439864-3439883 Msa0049920:CDS 35.0%
ATCATTTAAGCAACTTGCAC+GGG - chr1_2:3439980-3439999 Msa0049920:intron 35.0%
CTTGATGGAAAAAACGTAGA+TGG - chr1_2:3440008-3440027 Msa0049920:intron 35.0%
! TCGTTTCTGTTTCTTCAGAA+AGG - chr1_2:3440080-3440099 Msa0049920:intron 35.0%
TATGTATGATCTGAGAGAGA+AGG - chr1_2:3440184-3440203 Msa0049920:intron 35.0%
AATACACATCGATGCTTAAC+AGG - chr1_2:3440276-3440295 Msa0049920:intron 35.0%
CTAGGAAAGAGCTAGAAAAT+TGG - chr1_2:3440325-3440344 Msa0049920:intron 35.0%
AGCTAGAAAATTGGATAGCA+TGG - chr1_2:3440334-3440353 Msa0049920:intron 35.0%
GCTAGAAAATTGGATAGCAT+GGG - chr1_2:3440335-3440354 Msa0049920:intron 35.0%
AAATAGAACCAGTTGACTGT+TGG + chr1_2:3440418-3440437 None:intergenic 35.0%
!! ACAGTCAACTGGTTCTATTT+CGG - chr1_2:3440418-3440437 Msa0049920:intron 35.0%
GCTTACATTGGATAGTGATA+TGG - chr1_2:3440603-3440622 Msa0049920:intron 35.0%
CATCTCTCATCTTACAAGTT+AGG - chr1_2:3440642-3440661 Msa0049920:intron 35.0%
ATCTTACAAGTTAGGCTTGT+GGG - chr1_2:3440650-3440669 Msa0049920:intron 35.0%
TCAACACACTTCTTACACTT+AGG + chr1_2:3440767-3440786 None:intergenic 35.0%
TAGTGACATGAGCTAAATAG+TGG - chr1_2:3440802-3440821 Msa0049920:CDS 35.0%
!! CAAAACTAACTTCTAAGGTG+AGG + chr1_2:3440845-3440864 None:intergenic 35.0%
CCTTGCAAAACTAACTTCTA+AGG + chr1_2:3440850-3440869 None:intergenic 35.0%
!!! CCTTAGAAGTTAGTTTTGCA+AGG - chr1_2:3440847-3440866 Msa0049920:CDS 35.0%
TTTGTATCATCTACTTCACC+AGG - chr1_2:3440921-3440940 Msa0049920:CDS 35.0%
AGTCATGAGAAGTTGTTCAA+TGG - chr1_2:3441393-3441412 Msa0049920:CDS 35.0%
GTCATGAGAAGTTGTTCAAT+GGG - chr1_2:3441394-3441413 Msa0049920:CDS 35.0%
ATATGTGCAATCTAGAGAGA+GGG + chr1_2:3441430-3441449 None:intergenic 35.0%
AATATGTGCAATCTAGAGAG+AGG + chr1_2:3441431-3441450 None:intergenic 35.0%
ATTTCTTAGTTCCTTCCTCT+TGG - chr1_2:3441448-3441467 Msa0049920:CDS 35.0%
!!! CATTTTGAAATCCAAGAGGA+AGG + chr1_2:3441462-3441481 None:intergenic 35.0%
CTTCCTCTTGGATTTCAAAA+TGG - chr1_2:3441460-3441479 Msa0049920:CDS 35.0%
!!! TCTCCATTTTGAAATCCAAG+AGG + chr1_2:3441466-3441485 None:intergenic 35.0%
CACACCTGAAACATTAAATG+TGG - chr1_2:3441518-3441537 Msa0049920:intron 35.0%
AACCTGTAGCAATTTCAGAA+TGG - chr1_2:3441675-3441694 Msa0049920:intron 35.0%
!! ATCCATTCTGAAATTGCTAC+AGG + chr1_2:3441680-3441699 None:intergenic 35.0%
CCAATCATTCTCAGATATGA+TGG + chr1_2:3441923-3441942 None:intergenic 35.0%
CCATCATATCTGAGAATGAT+TGG - chr1_2:3441920-3441939 Msa0049920:intron 35.0%
! GAAATGTTTCTGCGAAGAAT+GGG - chr1_2:3441942-3441961 Msa0049920:intron 35.0%
! AAATGTTTCTGCGAAGAATG+GGG - chr1_2:3441943-3441962 Msa0049920:intron 35.0%
AATCTTTGCAGATACTCCTT+GGG + chr1_2:3441980-3441999 None:intergenic 35.0%
GATAAGGGGAATAATGAAAG+TGG - chr1_2:3442081-3442100 Msa0049920:intron 35.0%
!!! GTAGAGTTTTAGATTACCTC+AGG + chr1_2:3442135-3442154 None:intergenic 35.0%
AAACTCTACCAACATTCTGT+TGG - chr1_2:3442146-3442165 Msa0049920:intron 35.0%
TAGCATATCCAACAGAATGT+TGG + chr1_2:3442157-3442176 None:intergenic 35.0%
GCACAAGAAAATCAAGATCA+GGG + chr1_2:3442187-3442206 None:intergenic 35.0%
GACTTGGCTTCAAAAAACTT+AGG + chr1_2:3442209-3442228 None:intergenic 35.0%
! TATGAAGTTTAGGGTCTGTT+TGG - chr1_2:3442300-3442319 Msa0049920:CDS 35.0%
! AGATTATGGCTTATAACGGA+TGG - chr1_2:3442464-3442483 Msa0049920:intron 35.0%
!! GATTATGGCTTATAACGGAT+GGG - chr1_2:3442465-3442484 Msa0049920:intron 35.0%
CTGATGTGCTAAATAGAGAT+AGG - chr1_2:3442533-3442552 Msa0049920:intron 35.0%
TAGGTTATAACTTCCGAAAC+TGG - chr1_2:3442552-3442571 Msa0049920:intron 35.0%
GAAAAGGTTGTTACCAAACA+GGG + chr1_2:3442713-3442732 None:intergenic 35.0%
TGAAAAGGTTGTTACCAAAC+AGG + chr1_2:3442714-3442733 None:intergenic 35.0%
ATGAACATTTAGGCTCTGTT+TGG + chr1_2:3442866-3442885 None:intergenic 35.0%
TGTCTTAAAAAAGCTGCTTC+CGG - chr1_2:3443029-3443048 Msa0049920:intron 35.0%
ATTTATGTGGGTGAACAGAA+GGG + chr1_2:3443171-3443190 None:intergenic 35.0%
AATTTATGTGGGTGAACAGA+AGG + chr1_2:3443172-3443191 None:intergenic 35.0%
TGAAAGTTGCATTGGAGAAA+AGG - chr1_2:3443353-3443372 Msa0049920:CDS 35.0%
!! GATTTGTTGAAACAGATCGA+CGG - chr1_2:3443481-3443500 Msa0049920:CDS 35.0%
! ATTTGTTGAAACAGATCGAC+GGG - chr1_2:3443482-3443501 Msa0049920:CDS 35.0%
GCTCCAGGAAGATTAAAAAT+GGG - chr1_2:3443514-3443533 Msa0049920:CDS 35.0%
!! ACTCCCATTTTTAATCTTCC+TGG + chr1_2:3443520-3443539 None:intergenic 35.0%
ACCAGCTGAAAATGATGATA+TGG - chr1_2:3443577-3443596 Msa0049920:CDS 35.0%
CCAGCTGAAAATGATGATAT+GGG - chr1_2:3443578-3443597 Msa0049920:CDS 35.0%
ATGATGATATGGGAATCCTT+TGG - chr1_2:3443588-3443607 Msa0049920:CDS 35.0%
TGATGATATGGGAATCCTTT+GGG - chr1_2:3443589-3443608 Msa0049920:CDS 35.0%
CAAATTGCAACACATCATCT+TGG + chr1_2:3443755-3443774 None:intergenic 35.0%
!! CATGCTTGTTGATTCTTGAA+TGG - chr1_2:3443775-3443794 Msa0049920:CDS 35.0%
TTGATTCTTGAATGGGAGAA+TGG - chr1_2:3443783-3443802 Msa0049920:CDS 35.0%
TGGATTGTATAAAGCAGTAG+AGG + chr1_2:3443809-3443828 None:intergenic 35.0%
CCCTGATTGCTAAATCTATA+AGG - chr1_2:3443962-3443981 Msa0049920:CDS 35.0%
GCCTTATAGATTTAGCAATC+AGG + chr1_2:3443966-3443985 None:intergenic 35.0%
ACAGAGACTACGTATAAAAG+TGG + chr1_2:3444062-3444081 None:intergenic 35.0%
! CTTTTATACGTAGTCTCTGT+TGG - chr1_2:3444062-3444081 Msa0049920:intron 35.0%
ATGCAATCACACAATACAGA+GGG + chr1_2:3444206-3444225 None:intergenic 35.0%
TGTCTACTACAAGTCAGTTT+AGG + chr1_2:3444251-3444270 None:intergenic 35.0%
TGTCATTGCTGCAATCAATT+CGG - chr1_2:3444354-3444373 Msa0049920:intron 35.0%
TGACGAAAATACTACACTTG+TGG - chr1_2:3444475-3444494 Msa0049920:intron 35.0%
TGGAGATCAGATTATTGTGA+GGG - chr1_2:3444514-3444533 Msa0049920:intron 35.0%
! CAGCAATATCTCGATTTTCA+TGG + chr1_2:3444550-3444569 None:intergenic 35.0%
CATGAAAATCGAGATATTGC+TGG - chr1_2:3444548-3444567 Msa0049920:intron 35.0%
GACTTCAAATGTTTCATCTC+AGG - chr1_2:3444715-3444734 Msa0049920:intron 35.0%
!!! TGTAGGAACCACTTTTTCAT+TGG - chr1_2:3444741-3444760 Msa0049920:intron 35.0%
! AATGAGAAGAAATGGTTTGG+TGG - chr1_2:3444813-3444832 Msa0049920:intron 35.0%
!! ATACCTAGTGTTGGATGTTT+TGG - chr1_2:3444868-3444887 Msa0049920:intron 35.0%
TGTATGGCCAAAATTTCAAG+TGG - chr1_2:3444949-3444968 Msa0049920:five_prime_UTR 35.0%
GACGAACGAATGAATGAGTT+TGG + chr1_2:3434824-3434843 None:intergenic 40.0%
! TCGTCTTCTATCAGAAGTGT+CGG + chr1_2:3435323-3435342 None:intergenic 40.0%
! TGTTGGCATTGAGCAAGTTT+AGG - chr1_2:3435360-3435379 Msa0049920:intron 40.0%
TTCGTGCCCCTCAAAATATA+GGG + chr1_2:3435386-3435405 None:intergenic 40.0%
!! TTGAGTAATGGGTGTGGAAA+TGG - chr1_2:3435673-3435692 Msa0049920:intron 40.0%
TATAATACAAGACTCAGCCC+TGG + chr1_2:3435782-3435801 None:intergenic 40.0%
CCGGAACTTCAGAAATATTG+AGG - chr1_2:3435862-3435881 Msa0049920:intron 40.0%
ATTACAAAGCCAGTCTGTTC+AGG - chr1_2:3436021-3436040 Msa0049920:intron 40.0%
ACCAATGCACAGAAGCAATT+CGG + chr1_2:3436072-3436091 None:intergenic 40.0%
ATTCACGAAGTTCCGTGTTT+GGG + chr1_2:3436170-3436189 None:intergenic 40.0%
! ACAACCGGTGTTAGATCAAT+TGG - chr1_2:3436320-3436339 Msa0049920:CDS 40.0%
! CGTTCTTGCCTTGGAAATTT+TGG + chr1_2:3436499-3436518 None:intergenic 40.0%
TTGAACTATCGTTCTTGCCT+TGG + chr1_2:3436508-3436527 None:intergenic 40.0%
! AAGCCTTATCACACTAAGTG+GGG + chr1_2:3436738-3436757 None:intergenic 40.0%
! CAAGCCTTATCACACTAAGT+GGG + chr1_2:3436739-3436758 None:intergenic 40.0%
GTAGTGAAGAGGCAGTAAAA+GGG + chr1_2:3436812-3436831 None:intergenic 40.0%
TGTAGTGAAGAGGCAGTAAA+AGG + chr1_2:3436813-3436832 None:intergenic 40.0%
GTCGTTTGCATCATCTTTGA+GGG - chr1_2:3437017-3437036 Msa0049920:intron 40.0%
ATGAGTCTGAACAACCAGTA+AGG + chr1_2:3437069-3437088 None:intergenic 40.0%
ACGTAGTGGCTCAACAATAT+TGG - chr1_2:3437146-3437165 Msa0049920:intron 40.0%
AAGGGACACTACAAGATAGA+TGG + chr1_2:3437178-3437197 None:intergenic 40.0%
GTTGGACATGGAAAACATGT+CGG + chr1_2:3437225-3437244 None:intergenic 40.0%
! TGTTTTCCATGTCCAACACA+CGG - chr1_2:3437228-3437247 Msa0049920:intron 40.0%
! TCATTGGTCAGAATTGACTC+TGG - chr1_2:3437274-3437293 Msa0049920:intron 40.0%
GAGCACCTTCATAGTAAAGT+GGG + chr1_2:3437334-3437353 None:intergenic 40.0%
TGAGCACCTTCATAGTAAAG+TGG + chr1_2:3437335-3437354 None:intergenic 40.0%
!! CTCTGAAGCTTCTTCCAAAA+TGG - chr1_2:3437369-3437388 Msa0049920:intron 40.0%
! TGAGTTGGAGTTGAATGTCA+AGG - chr1_2:3437402-3437421 Msa0049920:intron 40.0%
GAGTTGGAGTTGAATGTCAA+GGG - chr1_2:3437403-3437422 Msa0049920:intron 40.0%
CATTAAGCTCTTCAACAGTG+AGG + chr1_2:3437462-3437481 None:intergenic 40.0%
CTCACTGTTGAAGAGCTTAA+TGG - chr1_2:3437460-3437479 Msa0049920:intron 40.0%
CTTCGTACAATACCTTTGGA+AGG + chr1_2:3437597-3437616 None:intergenic 40.0%
!! ACTGACAGTTTTCAGGACTA+CGG + chr1_2:3437818-3437837 None:intergenic 40.0%
TGAACAGTGATACACACACT+GGG + chr1_2:3437902-3437921 None:intergenic 40.0%
TTGAACAGTGATACACACAC+TGG + chr1_2:3437903-3437922 None:intergenic 40.0%
CACGTGTGAAACACAAATCA+AGG + chr1_2:3437974-3437993 None:intergenic 40.0%
!! CTTGATTTGTGTTTCACACG+TGG - chr1_2:3437972-3437991 Msa0049920:intron 40.0%
TCAGCTGTTCTGATACACAA+GGG - chr1_2:3438394-3438413 Msa0049920:CDS 40.0%
ACATCAAGGATGTGAACACA+GGG - chr1_2:3438449-3438468 Msa0049920:intron 40.0%
CTGGCAAGTATCAAGATATG+AGG + chr1_2:3438845-3438864 None:intergenic 40.0%
AATTGAGTCGTATCAGTGAG+AGG - chr1_2:3438890-3438909 Msa0049920:intron 40.0%
CTACCCTAGCAAATGATACA+AGG + chr1_2:3439136-3439155 None:intergenic 40.0%
! CTTGTATCATTTGCTAGGGT+AGG - chr1_2:3439134-3439153 Msa0049920:intron 40.0%
! GGAGCACCAAGATCAAAAAA+TGG + chr1_2:3439342-3439361 None:intergenic 40.0%
ATTCTTTGTAACGCAGGCAT+CGG + chr1_2:3439588-3439607 None:intergenic 40.0%
TATCCAAAACTGTTACCCTG+TGG - chr1_2:3439620-3439639 Msa0049920:intron 40.0%
ATCCAAAACTGTTACCCTGT+GGG - chr1_2:3439621-3439640 Msa0049920:intron 40.0%
GCATAAAGTTATTGCCCACA+GGG + chr1_2:3439638-3439657 None:intergenic 40.0%
AGCATAAAGTTATTGCCCAC+AGG + chr1_2:3439639-3439658 None:intergenic 40.0%
TGTTTGGACTGTCTGATTGA+TGG - chr1_2:3439912-3439931 Msa0049920:intron 40.0%
GTTTGGACTGTCTGATTGAT+GGG - chr1_2:3439913-3439932 Msa0049920:intron 40.0%
TTTGGACTGTCTGATTGATG+GGG - chr1_2:3439914-3439933 Msa0049920:intron 40.0%
AGTACTACGTGTCTAGATCA+TGG - chr1_2:3440033-3440052 Msa0049920:intron 40.0%
CATCTTACAAGTTAGGCTTG+TGG - chr1_2:3440649-3440668 Msa0049920:intron 40.0%
TCTTACAAGTTAGGCTTGTG+GGG - chr1_2:3440651-3440670 Msa0049920:intron 40.0%
!! CCATATTAGGTATTGGGGTT+AGG + chr1_2:3440687-3440706 None:intergenic 40.0%
CCTAACCCCAATACCTAATA+TGG - chr1_2:3440684-3440703 Msa0049920:intron 40.0%
! TGGCCCAATAGATTTAGGAT+AGG + chr1_2:3440718-3440737 None:intergenic 40.0%
CTAAATCTATTGGGCCACTT+GGG - chr1_2:3440721-3440740 Msa0049920:intron 40.0%
CACACTTCTTACACTTAGGA+AGG + chr1_2:3440763-3440782 None:intergenic 40.0%
ATCTACTTCACCAGGTTGTT+AGG - chr1_2:3440929-3440948 Msa0049920:CDS 40.0%
TCTACTTCACCAGGTTGTTA+GGG - chr1_2:3440930-3440949 Msa0049920:CDS 40.0%
TTTGAACAACCCTAACAACC+TGG + chr1_2:3440942-3440961 None:intergenic 40.0%
TAAGAAGAGCCAAAAACCCT+CGG + chr1_2:3441142-3441161 None:intergenic 40.0%
!! ATCTGAAGTGTTTTGCATGG+AGG - chr1_2:3441254-3441273 Msa0049920:CDS 40.0%
TATGTGCAATCTAGAGAGAG+GGG + chr1_2:3441429-3441448 None:intergenic 40.0%
TGTCAGAATTCTTCACAGCT+GGG + chr1_2:3441500-3441519 None:intergenic 40.0%
!! ACGTGGTGCTATATTTCCAA+GGG - chr1_2:3441765-3441784 Msa0049920:intron 40.0%
AAGGGAGTCTTCTGTAAGTT+GGG - chr1_2:3441783-3441802 Msa0049920:intron 40.0%
CTTACTTCTGTCCTACTTTG+TGG - chr1_2:3441877-3441896 Msa0049920:intron 40.0%
TGTCCTACTTTGTGGATACT+AGG - chr1_2:3441885-3441904 Msa0049920:intron 40.0%
! GGAAATGTTTCTGCGAAGAA+TGG - chr1_2:3441941-3441960 Msa0049920:intron 40.0%
CAATCTTTGCAGATACTCCT+TGG + chr1_2:3441981-3442000 None:intergenic 40.0%
ATCTGGATCTTGTGAAGAGA+TGG - chr1_2:3442029-3442048 Msa0049920:intron 40.0%
TGAAGAGATGGCAATATGTG+AGG - chr1_2:3442041-3442060 Msa0049920:intron 40.0%
ATTATTCCCCTTATCCCAGT+TGG + chr1_2:3442076-3442095 None:intergenic 40.0%
GGGAATAATGAAAGTGGGAA+TGG - chr1_2:3442087-3442106 Msa0049920:intron 40.0%
GGCACAAGAAAATCAAGATC+AGG + chr1_2:3442188-3442207 None:intergenic 40.0%
TATGAAGCTAAGGGTCTGTT+TGG - chr1_2:3442419-3442438 Msa0049920:CDS 40.0%
GTTATAACTTCCGAAACTGG+TGG - chr1_2:3442555-3442574 Msa0049920:intron 40.0%
! CGCTTTTATTCCACCAGTTT+CGG + chr1_2:3442568-3442587 None:intergenic 40.0%
CGAAACTGGTGGAATAAAAG+CGG - chr1_2:3442566-3442585 Msa0049920:intron 40.0%
GTCTTAAAAAAGCTGCTTCC+GGG - chr1_2:3443030-3443049 Msa0049920:intron 40.0%
AAGTTACATATGCACACACC+CGG + chr1_2:3443051-3443070 None:intergenic 40.0%
CAAACCTGCATGTGTTAGAA+GGG + chr1_2:3443333-3443352 None:intergenic 40.0%
ACAAACCTGCATGTGTTAGA+AGG + chr1_2:3443334-3443353 None:intergenic 40.0%
CAGGTTTGTGAAAGTTGCAT+TGG - chr1_2:3443345-3443364 Msa0049920:CDS 40.0%
TGTAATTCTTGTACGCGGAA+AGG - chr1_2:3443425-3443444 Msa0049920:CDS 40.0%
AAGCCTCCAAGATTGATCTA+GGG + chr1_2:3443455-3443474 None:intergenic 40.0%
ATCAATCTTGGAGGCTTCAA+AGG - chr1_2:3443458-3443477 Msa0049920:CDS 40.0%
TCAATCTTGGAGGCTTCAAA+GGG - chr1_2:3443459-3443478 Msa0049920:CDS 40.0%
CGCTCCAGGAAGATTAAAAA+TGG - chr1_2:3443513-3443532 Msa0049920:CDS 40.0%
! CCCATATCATCATTTTCAGC+TGG + chr1_2:3443581-3443600 None:intergenic 40.0%
GATGATATGGGAATCCTTTG+GGG - chr1_2:3443590-3443609 Msa0049920:CDS 40.0%
CATGCAATCACACAATACAG+AGG + chr1_2:3444207-3444226 None:intergenic 40.0%
GCAATGACAAACTAGTACGT+GGG + chr1_2:3444343-3444362 None:intergenic 40.0%
AGCAATGACAAACTAGTACG+TGG + chr1_2:3444344-3444363 None:intergenic 40.0%
TCCATATCTGGTAATTGCTC+AGG - chr1_2:3444400-3444419 Msa0049920:intron 40.0%
ACCTGAGCAATTACCAGATA+TGG + chr1_2:3444404-3444423 None:intergenic 40.0%
GTGGACGTTAACATATTTGC+TGG - chr1_2:3444494-3444513 Msa0049920:intron 40.0%
CTGGAGATCAGATTATTGTG+AGG - chr1_2:3444513-3444532 Msa0049920:intron 40.0%
TGAGCTGTGTAACGAGAAAA+AGG - chr1_2:3444652-3444671 Msa0049920:intron 40.0%
! TGTTTCATCTCAGGTTGTGT+AGG - chr1_2:3444724-3444743 Msa0049920:intron 40.0%
AGACCAAAACATCCAACACT+AGG + chr1_2:3444874-3444893 None:intergenic 40.0%
! GCCCTAGTAATGGCAAATTT+TGG - chr1_2:3444898-3444917 Msa0049920:intron 40.0%
TCGTCTTTCCATCTTCTCTC+TGG - chr1_2:3434869-3434888 Msa0049920:three_prime_UTR 45.0%
CGACATTACCAGAGAGAAGA+TGG + chr1_2:3434880-3434899 None:intergenic 45.0%
CTTCGTGCCCCTCAAAATAT+AGG + chr1_2:3435387-3435406 None:intergenic 45.0%
! TTGTTGGACTCTGCTTGTTG+AGG - chr1_2:3435407-3435426 Msa0049920:intron 45.0%
GACACTCAAAATCTCAGGGA+TGG - chr1_2:3435532-3435551 Msa0049920:intron 45.0%
GTATCATCATCCCCTTGTCT+CGG + chr1_2:3435843-3435862 None:intergenic 45.0%
AGACAAGGGGATGATGATAC+CGG - chr1_2:3435843-3435862 Msa0049920:intron 45.0%
TCCGAATTGCTTCTGTGCAT+TGG - chr1_2:3436068-3436087 Msa0049920:intron 45.0%
!! TCTTGGCTTTGACCCAAACA+CGG - chr1_2:3436155-3436174 Msa0049920:intron 45.0%
GATTCACGAAGTTCCGTGTT+TGG + chr1_2:3436171-3436190 None:intergenic 45.0%
TCCAAGATTTGTGAGTCCTG+CGG + chr1_2:3436205-3436224 None:intergenic 45.0%
CGAGCCAATTGATCTAACAC+CGG + chr1_2:3436327-3436346 None:intergenic 45.0%
! CGGTGTTAGATCAATTGGCT+CGG - chr1_2:3436325-3436344 Msa0049920:CDS 45.0%
GAAGCAATGTCAGGAACTCA+TGG + chr1_2:3436446-3436465 None:intergenic 45.0%
GCAATGACAGAAGCAATGTC+AGG + chr1_2:3436455-3436474 None:intergenic 45.0%
AATCTCTGTCTTTGTGGGGA+TGG - chr1_2:3436633-3436652 Msa0049920:intron 45.0%
ATCTCTGTCTTTGTGGGGAT+GGG - chr1_2:3436634-3436653 Msa0049920:intron 45.0%
CTTATCACACTAAGTGGGGT+TGG + chr1_2:3436734-3436753 None:intergenic 45.0%
CAACCCCACTTAGTGTGATA+AGG - chr1_2:3436732-3436751 Msa0049920:intron 45.0%
! CCAAGCCTTATCACACTAAG+TGG + chr1_2:3436740-3436759 None:intergenic 45.0%
CCACTTAGTGTGATAAGGCT+TGG - chr1_2:3436737-3436756 Msa0049920:intron 45.0%
GGTCGTTTGCATCATCTTTG+AGG - chr1_2:3437016-3437035 Msa0049920:intron 45.0%
! TTTGCATCATCTTTGAGGGC+TGG - chr1_2:3437021-3437040 Msa0049920:intron 45.0%
GAAAACATGTCGGACACTTC+GGG + chr1_2:3437215-3437234 None:intergenic 45.0%
GGAAAACATGTCGGACACTT+CGG + chr1_2:3437216-3437235 None:intergenic 45.0%
TTCAAGAAAAGGCCGTGTGT+TGG + chr1_2:3437243-3437262 None:intergenic 45.0%
!! CTATGAAGGTGCTCACAATG+TGG - chr1_2:3437340-3437359 Msa0049920:intron 45.0%
TACGGTACACATCCACAAAG+AGG + chr1_2:3437800-3437819 None:intergenic 45.0%
!! TCTTTGTTGTTGTCTGCCAG+AGG + chr1_2:3438282-3438301 None:intergenic 45.0%
AGTTCAGCGGGGAATGAAAA+TGG + chr1_2:3438319-3438338 None:intergenic 45.0%
TGGTGCATACTAAGTTCAGC+GGG + chr1_2:3438331-3438350 None:intergenic 45.0%
GTGGTGCATACTAAGTTCAG+CGG + chr1_2:3438332-3438351 None:intergenic 45.0%
GTCAGCTGTTCTGATACACA+AGG - chr1_2:3438393-3438412 Msa0049920:CDS 45.0%
AAGGGAACTGCAGCTAATAG+TGG - chr1_2:3438412-3438431 Msa0049920:intron 45.0%
CACATCAAGGATGTGAACAC+AGG - chr1_2:3438448-3438467 Msa0049920:intron 45.0%
! GTAGCTGACAGTAATGGAAG+TGG - chr1_2:3438601-3438620 Msa0049920:CDS 45.0%
! TTTTAGTGAGAACGGGGGAA+TGG - chr1_2:3438717-3438736 Msa0049920:CDS 45.0%
CTTTCCTATGGTTGTACTGC+TGG + chr1_2:3438864-3438883 None:intergenic 45.0%
GCAGTACAACCATAGGAAAG+AGG - chr1_2:3438864-3438883 Msa0049920:intron 45.0%
TGAAGCTCCTGTTAAACCAC+TGG - chr1_2:3438939-3438958 Msa0049920:intron 45.0%
CAAAAATACGGTTGCTCCAG+TGG + chr1_2:3438958-3438977 None:intergenic 45.0%
! CACTGGAGCAACCGTATTTT+TGG - chr1_2:3438956-3438975 Msa0049920:intron 45.0%
!! ATAGTGACTGGCTTCGTCAA+TGG - chr1_2:3438983-3439002 Msa0049920:intron 45.0%
!! TAGTGACTGGCTTCGTCAAT+GGG - chr1_2:3438984-3439003 Msa0049920:intron 45.0%
GGGCTGAAAATGTTACTCCA+AGG - chr1_2:3439004-3439023 Msa0049920:intron 45.0%
! TCTTTCCTTGCCTTAGCTTG+AGG - chr1_2:3439104-3439123 Msa0049920:intron 45.0%
AAGGAATGTGCCTCAAGCTA+AGG + chr1_2:3439117-3439136 None:intergenic 45.0%
GGACTTTACCGTGTGAACAT+TGG + chr1_2:3439229-3439248 None:intergenic 45.0%
TCGAGGTAACCTTTGACACT+GGG + chr1_2:3439250-3439269 None:intergenic 45.0%
!! AGCGACTGTCTTCTAAAGCA+TGG - chr1_2:3439273-3439292 Msa0049920:intron 45.0%
!! GCGACTGTCTTCTAAAGCAT+GGG - chr1_2:3439274-3439293 Msa0049920:intron 45.0%
!! ATTGGTAATGGGGCTTGAGA+AGG - chr1_2:3439404-3439423 Msa0049920:intron 45.0%
!! TTGGTAATGGGGCTTGAGAA+GGG - chr1_2:3439405-3439424 Msa0049920:intron 45.0%
! GAGCATTGTGAGATGGCAAA+GGG - chr1_2:3439526-3439545 Msa0049920:intron 45.0%
ATTGTGAGATGGCAAAGGGT+AGG - chr1_2:3439530-3439549 Msa0049920:intron 45.0%
TTGTGAGATGGCAAAGGGTA+GGG - chr1_2:3439531-3439550 Msa0049920:intron 45.0%
TTCTTTGTAACGCAGGCATC+GGG + chr1_2:3439587-3439606 None:intergenic 45.0%
! TTTGGGTTTGTGCTGATGTG+AGG - chr1_2:3439669-3439688 Msa0049920:intron 45.0%
TCGTGTCAGCAGACACTTAT+CGG - chr1_2:3439946-3439965 Msa0049920:intron 45.0%
CTTGCACGGGATATTCTTGA+TGG - chr1_2:3439993-3440012 Msa0049920:intron 45.0%
CAGAAAGGAATAAGGGGTGA+TGG - chr1_2:3440095-3440114 Msa0049920:intron 45.0%
ACTGTGTTCCAACAGTCAAC+TGG - chr1_2:3440407-3440426 Msa0049920:intron 45.0%
CATTGGATAGTGATATGGCC+TGG - chr1_2:3440608-3440627 Msa0049920:intron 45.0%
TAGTGATATGGCCTGGATAG+TGG - chr1_2:3440615-3440634 Msa0049920:intron 45.0%
AGAGATGACAACCACTATCC+AGG + chr1_2:3440629-3440648 None:intergenic 45.0%
CCAAGTGGCCCAATAGATTT+AGG + chr1_2:3440723-3440742 None:intergenic 45.0%
CCTAAATCTATTGGGCCACT+TGG - chr1_2:3440720-3440739 Msa0049920:intron 45.0%
!! TACACTTAGGAAGGAGCATC+TGG + chr1_2:3440754-3440773 None:intergenic 45.0%
GTGTGTTGAGAGTCTGACAT+TGG - chr1_2:3440778-3440797 Msa0049920:CDS 45.0%
! ACTTTTGTAGGTTGCAGCAG+TGG - chr1_2:3440995-3441014 Msa0049920:CDS 45.0%
ATCAGCTTCAGATGGAGCAT+CGG + chr1_2:3441037-3441056 None:intergenic 45.0%
GGACAACTAATAGCTGCTGT+TGG + chr1_2:3441066-3441085 None:intergenic 45.0%
GCAGCTATTAGTTGTCCACA+TGG - chr1_2:3441069-3441088 Msa0049920:CDS 45.0%
TCAGGCATAAGTTGTCCATG+TGG + chr1_2:3441087-3441106 None:intergenic 45.0%
AAGAAGAGCCAAAAACCCTC+GGG + chr1_2:3441141-3441160 None:intergenic 45.0%
! ACTGCATTCAGAGCACTCTT+TGG + chr1_2:3441226-3441245 None:intergenic 45.0%
TTTGCATGGAGGACTCTATG+AGG - chr1_2:3441265-3441284 Msa0049920:CDS 45.0%
GTGTCAGAATTCTTCACAGC+TGG + chr1_2:3441501-3441520 None:intergenic 45.0%
!! TCGTGAGTGCTGAGAAACAA+GGG + chr1_2:3441713-3441732 None:intergenic 45.0%
AGCACTCACGACTCATTGAA+AGG - chr1_2:3441722-3441741 Msa0049920:intron 45.0%
!! GACGTGGTGCTATATTTCCA+AGG - chr1_2:3441764-3441783 Msa0049920:intron 45.0%
CAACTTACAGAAGACTCCCT+TGG + chr1_2:3441784-3441803 None:intergenic 45.0%
CAAGGGAGTCTTCTGTAAGT+TGG - chr1_2:3441782-3441801 Msa0049920:intron 45.0%
AGGGAGTCTTCTGTAAGTTG+GGG - chr1_2:3441784-3441803 Msa0049920:intron 45.0%
CTGCCTAGTATCCACAAAGT+AGG + chr1_2:3441891-3441910 None:intergenic 45.0%
CTACTTTGTGGATACTAGGC+AGG - chr1_2:3441889-3441908 Msa0049920:intron 45.0%
!! GATTCGGTGAATGCTACATC+TGG - chr1_2:3442012-3442031 Msa0049920:intron 45.0%
TTCGATCAAGACTTGTCCTG+AGG - chr1_2:3442116-3442135 Msa0049920:intron 45.0%
AACTGGTGGAATAAAAGCGG+TGG - chr1_2:3442569-3442588 Msa0049920:intron 45.0%
GACGACAAAAAAGCCCTGTT+TGG - chr1_2:3442697-3442716 Msa0049920:intron 45.0%
GGGTGTGTGCATATGTAACT+TGG - chr1_2:3443050-3443069 Msa0049920:intron 45.0%
TTTGCCCTTCTAACACATGC+AGG - chr1_2:3443326-3443345 Msa0049920:CDS 45.0%
AATTCTTGTACGCGGAAAGG+AGG - chr1_2:3443428-3443447 Msa0049920:CDS 45.0%
GAAGCCTCCAAGATTGATCT+AGG + chr1_2:3443456-3443475 None:intergenic 45.0%
ACAAACTTGGCTTACCCCAA+AGG + chr1_2:3443607-3443626 None:intergenic 45.0%
! GTTGGCTGGCTAACTTTATG+TGG - chr1_2:3443657-3443676 Msa0049920:CDS 45.0%
GCAATCAGGGGCTTAAAGAT+GGG + chr1_2:3443952-3443971 None:intergenic 45.0%
AGCAATCAGGGGCTTAAAGA+TGG + chr1_2:3443953-3443972 None:intergenic 45.0%
TAAAAGGGCAGATTGTAGGG+TGG - chr1_2:3444035-3444054 Msa0049920:intron 45.0%
GGAGAGAGAGCAATCCAATA+TGG + chr1_2:3444144-3444163 None:intergenic 45.0%
CAATCACACAATACAGAGGG+AGG + chr1_2:3444203-3444222 None:intergenic 45.0%
ACCATGTAAATCCTTGTGCC+TGG - chr1_2:3444842-3444861 Msa0049920:intron 45.0%
CCATGTAAATCCTTGTGCCT+GGG - chr1_2:3444843-3444862 Msa0049920:intron 45.0%
CATGTAAATCCTTGTGCCTG+GGG - chr1_2:3444844-3444863 Msa0049920:intron 45.0%
!! TGGTCTTGTTGCCCTAGTAA+TGG - chr1_2:3444888-3444907 Msa0049920:intron 45.0%
GTCCTGTGTTCGACACTTGT+TGG - chr1_2:3435343-3435362 Msa0049920:CDS 50.0%
!! TGCCAACAAGTGTCGAACAC+AGG + chr1_2:3435348-3435367 None:intergenic 50.0%
! TTTGAGGGGCACGAAGTTGT+TGG - chr1_2:3435391-3435410 Msa0049920:intron 50.0%
AAGCACGATCTCACAATCGC+AGG + chr1_2:3435473-3435492 None:intergenic 50.0%
CAATGAGCAGATCAACGGCT+CGG - chr1_2:3435802-3435821 Msa0049920:intron 50.0%
AATGAGCAGATCAACGGCTC+GGG - chr1_2:3435803-3435822 Msa0049920:intron 50.0%
ACACGACAACCTGAACAGAC+TGG + chr1_2:3436033-3436052 None:intergenic 50.0%
GAATCTGCTAATTCACCCGC+AGG - chr1_2:3436186-3436205 Msa0049920:CDS 50.0%
CCAAGATTTGTGAGTCCTGC+GGG + chr1_2:3436204-3436223 None:intergenic 50.0%
TCACATGAGACACACTTCCC+CGG + chr1_2:3436539-3436558 None:intergenic 50.0%
TCTCTGTCTTTGTGGGGATG+GGG - chr1_2:3436635-3436654 Msa0049920:intron 50.0%
! ACTAAGTGGGGTTGGCAACA+TGG + chr1_2:3436726-3436745 None:intergenic 50.0%
!! AAGAAGCACAGGCACTGACA+TGG - chr1_2:3437112-3437131 Msa0049920:intron 50.0%
! CGGGTTAGACACAGCACAAA+GGG + chr1_2:3437196-3437215 None:intergenic 50.0%
! TCGGGTTAGACACAGCACAA+AGG + chr1_2:3437197-3437216 None:intergenic 50.0%
AAAAGGCCGTGTGTTGGACA+TGG + chr1_2:3437237-3437256 None:intergenic 50.0%
GCGCTATGTCTTCCTTCCAA+AGG - chr1_2:3437582-3437601 Msa0049920:intron 50.0%
CTCATGTGATCGCTACAAGC+AGG + chr1_2:3438124-3438143 None:intergenic 50.0%
GGTGCATACTAAGTTCAGCG+GGG + chr1_2:3438330-3438349 None:intergenic 50.0%
GAGATGGCTCAGACAATCTG+TGG + chr1_2:3438351-3438370 None:intergenic 50.0%
AGGATGTGAACACAGGGCAA+TGG - chr1_2:3438455-3438474 Msa0049920:intron 50.0%
ATGTGAACACAGGGCAATGG+TGG - chr1_2:3438458-3438477 Msa0049920:intron 50.0%
TGTGAACACAGGGCAATGGT+GGG - chr1_2:3438459-3438478 Msa0049920:intron 50.0%
GCAAGGGTAGCTGACAGTAA+TGG - chr1_2:3438595-3438614 Msa0049920:CDS 50.0%
CTTGCCAGCAGTACAACCAT+AGG - chr1_2:3438857-3438876 Msa0049920:intron 50.0%
GGTTGCTCCAGTGGTTTAAC+AGG + chr1_2:3438949-3438968 None:intergenic 50.0%
ATGTGCCTCAAGCTAAGGCA+AGG + chr1_2:3439112-3439131 None:intergenic 50.0%
CGGTAAAGTCCCAGTGTCAA+AGG - chr1_2:3439238-3439257 Msa0049920:intron 50.0%
GTCGAGGTAACCTTTGACAC+TGG + chr1_2:3439251-3439270 None:intergenic 50.0%
! AGAAGACAGTCGCTTTGTCG+AGG + chr1_2:3439267-3439286 None:intergenic 50.0%
GGGCTTGAGAAGGGATAGAT+TGG - chr1_2:3439414-3439433 Msa0049920:intron 50.0%
!! GAGTGAGGAGCATTGTGAGA+TGG - chr1_2:3439519-3439538 Msa0049920:intron 50.0%
!! GGAGCATTGTGAGATGGCAA+AGG - chr1_2:3439525-3439544 Msa0049920:intron 50.0%
AAAGGGTAGGGTCTGAGTAG+AGG - chr1_2:3439543-3439562 Msa0049920:intron 50.0%
AAGGGTAGGGTCTGAGTAGA+GGG - chr1_2:3439544-3439563 Msa0049920:intron 50.0%
! TGCCCACAGGGTAACAGTTT+TGG + chr1_2:3439626-3439645 None:intergenic 50.0%
! CAGTCCTCGTGAGAAAGTGT+TGG + chr1_2:3439891-3439910 None:intergenic 50.0%
TTCTCACGAGGACTGCTGTT+TGG - chr1_2:3439896-3439915 Msa0049920:CDS 50.0%
ACTGTCTGATTGATGGGGCT+CGG - chr1_2:3439919-3439938 Msa0049920:intron 50.0%
CGTGTCAGCAGACACTTATC+GGG - chr1_2:3439947-3439966 Msa0049920:intron 50.0%
AGCTAGTGAGGGGCTTACAT+TGG - chr1_2:3440591-3440610 Msa0049920:intron 50.0%
TTTGTAGGTTGCAGCAGTGG+TGG - chr1_2:3440998-3441017 Msa0049920:CDS 50.0%
! GCTCCATCTGAAGCTGATTC+TGG - chr1_2:3441039-3441058 Msa0049920:CDS 50.0%
GGTCCAGAATCAGCTTCAGA+TGG + chr1_2:3441045-3441064 None:intergenic 50.0%
CTTATGCCTGAGCAAGCAAC+TGG - chr1_2:3441096-3441115 Msa0049920:CDS 50.0%
TTAGCACCAGTTGCTTGCTC+AGG + chr1_2:3441105-3441124 None:intergenic 50.0%
! AGCAAGCAACTGGTGCTAAG+CGG - chr1_2:3441106-3441125 Msa0049920:CDS 50.0%
! TGCTTGTTCCCGAGGGTTTT+TGG - chr1_2:3441130-3441149 Msa0049920:CDS 50.0%
TGGTGCACTGCTCTGTGAAA+AGG - chr1_2:3441545-3441564 Msa0049920:intron 50.0%
!! GTCGTGAGTGCTGAGAAACA+AGG + chr1_2:3441714-3441733 None:intergenic 50.0%
CGTCTGAGAATCAGTTCAGG+AGG + chr1_2:3441748-3441767 None:intergenic 50.0%
CCACGTCTGAGAATCAGTTC+AGG + chr1_2:3441751-3441770 None:intergenic 50.0%
! CCTGAACTGATTCTCAGACG+TGG - chr1_2:3441748-3441767 Msa0049920:intron 50.0%
! GGGAGTCTTCTGTAAGTTGG+GGG - chr1_2:3441785-3441804 Msa0049920:intron 50.0%
CTTTGTGGATACTAGGCAGG+TGG - chr1_2:3441892-3441911 Msa0049920:intron 50.0%
GGCAATATGTGAGGACCAGT+TGG - chr1_2:3442050-3442069 Msa0049920:intron 50.0%
CAGTTGGCCAACTGGGATAA+GGG - chr1_2:3442066-3442085 Msa0049920:intron 50.0%
AGTTGGCCAACTGGGATAAG+GGG - chr1_2:3442067-3442086 Msa0049920:intron 50.0%
GGCACTGCTATACAGTGCAA+AGG - chr1_2:3442486-3442505 Msa0049920:intron 50.0%
CGGTGGTTGTGCTGTAAGTT+TGG - chr1_2:3442586-3442605 Msa0049920:intron 50.0%
GGAGGTCCCTAGATCAATCT+TGG - chr1_2:3443446-3443465 Msa0049920:CDS 50.0%
GGTCCCTAGATCAATCTTGG+AGG - chr1_2:3443449-3443468 Msa0049920:CDS 50.0%
GTGCAGGTAGCAATGTGAAC+AGG + chr1_2:3444165-3444184 None:intergenic 50.0%
TCACACAATACAGAGGGAGG+AGG + chr1_2:3444200-3444219 None:intergenic 50.0%
AAAGGATACACAGCGTACCG+AGG - chr1_2:3444670-3444689 Msa0049920:intron 50.0%
AAGGATACACAGCGTACCGA+GGG - chr1_2:3444671-3444690 Msa0049920:intron 50.0%
CCCAGGCACAAGGATTTACA+TGG + chr1_2:3444846-3444865 None:intergenic 50.0%
TCAGGGATGGATCTGCGTGT+CGG - chr1_2:3435545-3435564 Msa0049920:intron 55.0%
!! GTCGGTGTCAGTGTCATGTC+AGG - chr1_2:3435563-3435582 Msa0049920:intron 55.0%
ATGAGCAGATCAACGGCTCG+GGG - chr1_2:3435804-3435823 Msa0049920:intron 55.0%
GAACGCGGAAGTCTGGCATA+TGG - chr1_2:3436106-3436125 Msa0049920:intron 55.0%
CCCGCAGGACTCACAAATCT+TGG - chr1_2:3436201-3436220 Msa0049920:CDS 55.0%
!! TGGCATTGACGCACACGTAG+TGG - chr1_2:3437132-3437151 Msa0049920:intron 55.0%
AGGGCCAACACTTTCTCACG+AGG - chr1_2:3439884-3439903 Msa0049920:CDS 55.0%
! GCAAGCAACTGGTGCTAAGC+GGG - chr1_2:3441107-3441126 Msa0049920:CDS 55.0%
!! TGGGGTGCTACTGAAACCCA+AGG - chr1_2:3441961-3441980 Msa0049920:intron 55.0%
TGAGGACCAGTTGGCCAACT+GGG - chr1_2:3442059-3442078 Msa0049920:intron 55.0%
CCTTATCCCAGTTGGCCAAC+TGG + chr1_2:3442068-3442087 None:intergenic 55.0%
CCAGTTGGCCAACTGGGATA+AGG - chr1_2:3442065-3442084 Msa0049920:intron 55.0%
TGTGGGTGAACAGAAGGGAG+TGG + chr1_2:3443166-3443185 None:intergenic 55.0%
! GACGGGTTTCTAAACGCTCC+AGG - chr1_2:3443499-3443518 Msa0049920:CDS 55.0%
ATACAGAGGGAGGAGGATCC+AGG + chr1_2:3444193-3444212 None:intergenic 55.0%
ATACACAGCGTACCGAGGGA+GGG - chr1_2:3444675-3444694 Msa0049920:intron 55.0%
TGTTCCACGAAACCCTCCCT+CGG + chr1_2:3444690-3444709 None:intergenic 55.0%
TCCAACACTAGGTATGCCCC+AGG + chr1_2:3444863-3444882 None:intergenic 55.0%
!! GCATTGGTTCCGCCTCCAAG+TGG - chr1_2:3436084-3436103 Msa0049920:intron 60.0%
TTCCGCCTCCAAGTGGAACG+CGG - chr1_2:3436091-3436110 Msa0049920:intron 60.0%
TTCCGCGTTCCACTTGGAGG+CGG + chr1_2:3436096-3436115 None:intergenic 60.0%
GACTTCCGCGTTCCACTTGG+AGG + chr1_2:3436099-3436118 None:intergenic 60.0%
CCAGACTTCCGCGTTCCACT+TGG + chr1_2:3436102-3436121 None:intergenic 60.0%
CCAAGTGGAACGCGGAAGTC+TGG - chr1_2:3436099-3436118 Msa0049920:intron 60.0%
!! CAAGGGCGCCCAACAAACAG+AGG + chr1_2:3436918-3436937 None:intergenic 60.0%
! CATCTGGAGCACGACCCAAG+TGG + chr1_2:3440738-3440757 None:intergenic 60.0%
TAAGCGGGTGCTTGTTCCCG+AGG - chr1_2:3441122-3441141 Msa0049920:CDS 60.0%
AAGCGGGTGCTTGTTCCCGA+GGG - chr1_2:3441123-3441142 Msa0049920:CDS 60.0%
GTGAGGACCAGTTGGCCAAC+TGG - chr1_2:3442058-3442077 Msa0049920:intron 60.0%
TTGCTACCTGCACAGCTGCC+TGG - chr1_2:3444172-3444191 Msa0049920:intron 60.0%
GATACACAGCGTACCGAGGG+AGG - chr1_2:3444674-3444693 Msa0049920:intron 60.0%
CTAGGTATGCCCCAGGCACA+AGG + chr1_2:3444856-3444875 None:intergenic 60.0%
GCCTGGGGCATACCTAGTGT+TGG - chr1_2:3444859-3444878 Msa0049920:intron 60.0%
GAGGATCCAGGCAGCTGTGC+AGG + chr1_2:3444181-3444200 None:intergenic 65.0%
CGTACCGAGGGAGGGTTTCG+TGG - chr1_2:3444683-3444702 Msa0049920:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 3434821 3444972 3434821 ID=Msa0049920;Name=Msa0049920
chr1_2 mRNA 3434821 3444972 3434821 ID=Msa0049920-mRNA-1;Parent=Msa0049920;Name=Msa0049920-mRNA-1;_AED=0.06;_eAED=0.06;_QI=90|0.78|0.86|0.93|0.92|0.86|15|227|1116
chr1_2 exon 3434821 3435142 3434821 ID=Msa0049920-mRNA-1:exon:866;Parent=Msa0049920-mRNA-1
chr1_2 exon 3435224 3435371 3435224 ID=Msa0049920-mRNA-1:exon:865;Parent=Msa0049920-mRNA-1
chr1_2 exon 3436182 3436445 3436182 ID=Msa0049920-mRNA-1:exon:864;Parent=Msa0049920-mRNA-1
chr1_2 exon 3437656 3437886 3437656 ID=Msa0049920-mRNA-1:exon:863;Parent=Msa0049920-mRNA-1
chr1_2 exon 3437998 3438069 3437998 ID=Msa0049920-mRNA-1:exon:862;Parent=Msa0049920-mRNA-1
chr1_2 exon 3438227 3438425 3438227 ID=Msa0049920-mRNA-1:exon:861;Parent=Msa0049920-mRNA-1
chr1_2 exon 3438507 3438788 3438507 ID=Msa0049920-mRNA-1:exon:860;Parent=Msa0049920-mRNA-1
chr1_2 exon 3439670 3439917 3439670 ID=Msa0049920-mRNA-1:exon:859;Parent=Msa0049920-mRNA-1
chr1_2 exon 3440241 3440273 3440241 ID=Msa0049920-mRNA-1:exon:858;Parent=Msa0049920-mRNA-1
chr1_2 exon 3440480 3440588 3440480 ID=Msa0049920-mRNA-1:exon:857;Parent=Msa0049920-mRNA-1
chr1_2 exon 3440768 3441504 3440768 ID=Msa0049920-mRNA-1:exon:856;Parent=Msa0049920-mRNA-1
chr1_2 exon 3442190 3442445 3442190 ID=Msa0049920-mRNA-1:exon:855;Parent=Msa0049920-mRNA-1
chr1_2 exon 3443231 3443827 3443231 ID=Msa0049920-mRNA-1:exon:854;Parent=Msa0049920-mRNA-1
chr1_2 exon 3443910 3444016 3443910 ID=Msa0049920-mRNA-1:exon:853;Parent=Msa0049920-mRNA-1
chr1_2 exon 3444910 3444972 3444910 ID=Msa0049920-mRNA-1:exon:852;Parent=Msa0049920-mRNA-1
chr1_2 five_prime_UTR 3444910 3444972 3444910 ID=Msa0049920-mRNA-1:five_prime_utr;Parent=Msa0049920-mRNA-1
chr1_2 five_prime_UTR 3443990 3444016 3443990 ID=Msa0049920-mRNA-1:five_prime_utr;Parent=Msa0049920-mRNA-1
chr1_2 CDS 3443910 3443989 3443910 ID=Msa0049920-mRNA-1:cds;Parent=Msa0049920-mRNA-1
chr1_2 CDS 3443231 3443827 3443231 ID=Msa0049920-mRNA-1:cds;Parent=Msa0049920-mRNA-1
chr1_2 CDS 3442190 3442445 3442190 ID=Msa0049920-mRNA-1:cds;Parent=Msa0049920-mRNA-1
chr1_2 CDS 3440768 3441504 3440768 ID=Msa0049920-mRNA-1:cds;Parent=Msa0049920-mRNA-1
chr1_2 CDS 3440480 3440588 3440480 ID=Msa0049920-mRNA-1:cds;Parent=Msa0049920-mRNA-1
chr1_2 CDS 3440241 3440273 3440241 ID=Msa0049920-mRNA-1:cds;Parent=Msa0049920-mRNA-1
chr1_2 CDS 3439670 3439917 3439670 ID=Msa0049920-mRNA-1:cds;Parent=Msa0049920-mRNA-1
chr1_2 CDS 3438507 3438788 3438507 ID=Msa0049920-mRNA-1:cds;Parent=Msa0049920-mRNA-1
chr1_2 CDS 3438227 3438425 3438227 ID=Msa0049920-mRNA-1:cds;Parent=Msa0049920-mRNA-1
chr1_2 CDS 3437998 3438069 3437998 ID=Msa0049920-mRNA-1:cds;Parent=Msa0049920-mRNA-1
chr1_2 CDS 3437656 3437886 3437656 ID=Msa0049920-mRNA-1:cds;Parent=Msa0049920-mRNA-1
chr1_2 CDS 3436182 3436445 3436182 ID=Msa0049920-mRNA-1:cds;Parent=Msa0049920-mRNA-1
chr1_2 CDS 3435224 3435371 3435224 ID=Msa0049920-mRNA-1:cds;Parent=Msa0049920-mRNA-1
chr1_2 CDS 3435048 3435142 3435048 ID=Msa0049920-mRNA-1:cds;Parent=Msa0049920-mRNA-1
chr1_2 three_prime_UTR 3434821 3435047 3434821 ID=Msa0049920-mRNA-1:three_prime_utr;Parent=Msa0049920-mRNA-1
Gene Sequence

>Msa0049920

ATGAGCAGATCAACGGCTCGGGGTAAAAATAAAAGACCGAGACAAGGGGATGATGATACCGGAACTTCAGAAATATTGAGGAAAATATACAAAACAGGCGTAGCAACTGATGATGATATGAGCAAACTGTATATGATTACAAAGCCAGTCTGTTCAGGTTGTCGTGTTAATACTAAAGACAATCCGAATTGCTTCTGTGCATTGGTTCCGCCTCCAAGTGGAACGCGGAAGTCTGGCATATGGCAGAAGATATCTGATTTTGTTGATAGTCTTGGCTTTGACCCAAACACGGAACTTCGTGAATCTGCTAATTCACCCGCAGGACTCACAAATCTTGGAGCAACGTGTTATGCTAACAGCATACTCCAATGCTTGTATATGAATAAACGTTTTCGAGAAGGATTATTTTCTGTTGAACCAGATATTTTTCAGCAACAACCGGTGTTAGATCAATTGGCTCGGCTTTTTGCTCAGTTGCATTTAAGTAAAAAGGCTTTCATAGATTCTTCTCCATTTGTAAAAACGTTGGAGTTGGACAATGAAGTTCAGCAAGATAGCCATGAGTTCCTGACATTGCTTCTGTCATTGCTAGAGCGCTGCCTTAGTCGTTCCAAAATTTCCAAGGCAAGAACGATAGTTCAAGATCTTTTCCGGGGAAGTGTGTCTCATGTGACAACGTGCTCACAATGTGGAAGAGACTCTGAAGCTTCTTCCAAAATGGAAGACTTCTATGAGTTGGAGTTGAATGTCAAGGGATTGAAAAGTTTAGACGAGAGCTTAGATGATTACCTCACTGTTGAAGAGCTTAATGGAGACAATCAATATTTTTGTGAGTCATGTAAAACAAGGGTTGATGCTACTCGCAGCATCAAGCTGCGAACATTACCTGATGTGCTTAATTTTCAGCTTAAGCGCTATGTCTTCCTTCCAAAGACAACAACAAAGAAGAAAGTTACTTCTCCATTTTCATTCCCCGCTGAACTTAGTATGCACCACAGATTGTCTGAGCCATCTCAGTCTGAATTGATATATGACTTGTCAGCTGTTCTGATACACAAGGGAACTGCAGCTAATAGTGGTCATTACATTGCACACATCAAGGATGTGAACACAGGGCAATGGTGGGAATTTGATGATGAGCTTGTTACTAACTTGGGCCGTTGTCCATTTTCAGAAGAAGCTTCATGCTCTGCTTCTAAATCTGTTAAGAATGATCTGGATCATTCTAATTTCTCTGAAGCAAGGGTAGCTGACAGTAATGGAAGTGGTTCAAATGTAAAAGTTTCACAATCTTTACCCATGGAGACATTTTCATCTAGTGATGCATATATGTTGATGTACCATCTTAAGCATACCAAATTTTTTAGTGAGAACGGGGGAATGGAAACTAGTGCTAATCATACTGAAACAGTTGATGTTCCAATTACTGCACAAGATAATGATTGTCTTCCTTCTCATTTTTGTGAAGAGATTCAAAATTTCAATGCCTCATATCTTGATACTTGCCAGCAGTACAACCATAGGAAAGAGGTAGAATTGAGTCGTATCAGTGAGAGGAGAGAAGAAGTTCGATCTGTTTTAGCTGAAGCTCCTGTTAAACCACTGGAGCAACCGTATTTTTGGATTTATAGTGACTGGCTTCGTCAATGGGCTGAAAATGTTACTCCAAGTGCTATTGACAACACATCTATCCAATGTTCACACGGTAAAGTCCCAGTGTCAAAGGTTACCTCGACAAAGCGACTGTCTTCTAAAGCATGGGATAAGTTACTGTCTAAGAGTGAGGAGCATTGTGAGATGGCAAAGGGTAGGTATGGTGGAGGGCCAACACTTTCTCACGAGGACTGCTGTTTGGACTGTCTGATTGATGGGGCTCGGAATGTCGTGTCAGCAGACACTTATCGGGATCAAAGAGAATCATTTAAGCAACTTGCACGGGATATTCTTGATGGAAAAAACGTAGATGGAAAGTACTACGTGTCTAGATCATGGTATGATTGCAAATCTTTTCTCTTGTCGTTTCTGTTTCTTCAGAAAGGAATAAGGGGTGATGGAGATAAGTTGCAGCAGTGGTGGAAAAGAAAAGTTGCCGATGCTCCATCTGAAGCTGATTCTGGACCAACAGCAGCTATTAGTTGTCCACATGGACAACTTATGCCTGAGCAAGCAACTGGTGCTAAGCGGGTGCTTGTTCCCGAGGGTTTTTGGCTCTTCTTATATGAAGATGCCACTTCTGTGAAAAATGATCTTCTGGTCTGCCCTACATTTCATTTAGACTCCAAAGAGTGCTCTGAATGCAGTAGCGAATTATCTGAAGTGTTTTGCATGGAGGACTCTATGAGGTTATTAAAACAAAGGCAGCGTCAGAGTCATGAGAAGTTGTTCAATGGGAAAAGTATGCCCCTCTCTCTAGATTGCACATATTTCTTAGTTCCTTCCTCTTGGATTTCAAAATGGAGAACGTATATCAACCCAGCTGTGAAGAATTCTGACACACCTGAAACATTAAATGTGGTGATTGGTGCACTGCTCTGTGAAAAGCACTCACGACTCATTGAAAGGCCTCCTGAACTGATTCTCAGACGTGGTGCTATATTTCCAAGGGAGTCTTCTGCAGGTGGCTTAACCATCATATCTGAGAATGATTGGAAATGTTTCTGCGAAGAATGGGGTGCTACTGAAACCCAAGGAGTATCTGCAAAGATTGAGAAAATTAATGATTCGGTGAATGCTACATCTGGATCTTGTGAAGAGATGGCAATATGTGAGGACCAGTTGGCCAACTGGGATAAGGGGAATAATGAAAGTGGGAATGGTCAATTTTCGATCAAGACTTGTCCTGAGGTTTGTGAAAGTTGCATTGGAGAAAAGGAAAGCTGTGAGTTAGTGCATAAACTTAATTATTCCAATGAGGATATATGTGTAATTCTTGTACGCGGAAAGGAGGTCCCTAGATCAATCTTGGAGGCTTCAAAGGGATTTGTTGAAACAGATCGACGGGTTTCTAAACGCTCCAGGAAGATTAAAAATGGGAGTTCAATTAATCTAAAAGTGTCTGCTTCAACATCAATTTACCAGCTGAAAATGATGATATGGGAATCCTTTGGGGTTGTCAAAGAAAATCAGATACTACAAAAAGGTGATATAACAATTGATCACATTGACGAAAATACTACACTTGTGGACGTTAACATATTTGCTGGAGATCAGATTATTGTGAGGGACTCTGAGATCCATGAAAATCGAGATATTGCTGATGAGCTGTGTAACGAGAAAAAGGATACACAGCGTACCGAGGGAGGGTTTCGTGGAACACTTTTGACTTCAAATGTTTCATCTCAGGTTGTGTAG
Protein sequence

>Msa0049920

MSRSTARGKNKRPRQGDDDTGTSEILRKIYKTGVATDDDMSKLYMITKPVCSGCRVNTKDNPNCFCALVPPPSGTRKSGIWQKISDFVDSLGFDPNTELRESANSPAGLTNLGATCYANSILQCLYMNKRFREGLFSVEPDIFQQQPVLDQLARLFAQLHLSKKAFIDSSPFVKTLELDNEVQQDSHEFLTLLLSLLERCLSRSKISKARTIVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYELELNVKGLKSLDESLDDYLTVEELNGDNQYFCESCKTRVDATRSIKLRTLPDVLNFQLKRYVFLPKTTTKKKVTSPFSFPAELSMHHRLSEPSQSELIYDLSAVLIHKGTAANSGHYIAHIKDVNTGQWWEFDDELVTNLGRCPFSEEASCSASKSVKNDLDHSNFSEARVADSNGSGSNVKVSQSLPMETFSSSDAYMLMYHLKHTKFFSENGGMETSANHTETVDVPITAQDNDCLPSHFCEEIQNFNASYLDTCQQYNHRKEVELSRISERREEVRSVLAEAPVKPLEQPYFWIYSDWLRQWAENVTPSAIDNTSIQCSHGKVPVSKVTSTKRLSSKAWDKLLSKSEEHCEMAKGRYGGGPTLSHEDCCLDCLIDGARNVVSADTYRDQRESFKQLARDILDGKNVDGKYYVSRSWYDCKSFLLSFLFLQKGIRGDGDKLQQWWKRKVADAPSEADSGPTAAISCPHGQLMPEQATGAKRVLVPEGFWLFLYEDATSVKNDLLVCPTFHLDSKECSECSSELSEVFCMEDSMRLLKQRQRQSHEKLFNGKSMPLSLDCTYFLVPSSWISKWRTYINPAVKNSDTPETLNVVIGALLCEKHSRLIERPPELILRRGAIFPRESSAGGLTIISENDWKCFCEEWGATETQGVSAKIEKINDSVNATSGSCEEMAICEDQLANWDKGNNESGNGQFSIKTCPEVCESCIGEKESCELVHKLNYSNEDICVILVRGKEVPRSILEASKGFVETDRRVSKRSRKIKNGSSINLKVSASTSIYQLKMMIWESFGVVKENQILQKGDITIDHIDENTTLVDVNIFAGDQIIVRDSEIHENRDIADELCNEKKDTQRTEGGFRGTLLTSNVSSQVV*