AlfalfaGEDB | Msa1388820

M. sativa cultivar zhongmu-4 / Msa1388820

KEGG: K11858
GO: GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0007275 GO:0008150 GO:0009791 GO:0010154 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0070013
PFAM: PF00443.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1388820	XP_024630993.1	94.808	1117	23	3	1	1116	1	1083	0.0	2180

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1388820	sp\|Q9SCJ9\|UBP26_ARATH	56.926	1119	425	12	1	1115	1	1066	0.0	1188

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1388820	A0A072VDC3	94.808	1117	23	3	1	1116	1	1083	0.0	2180

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007480	Msa1388820	0.840664	7.589955e-58	-8.615850e-47
Msa0016670	Msa1388820	0.801854	7.396234e-49	-8.615850e-47
Msa0017510	Msa1388820	0.808555	2.923584e-50	-8.615850e-47
Msa0049920	Msa1388820	0.957940	8.008247e-116	-8.615850e-47
Msa0053110	Msa1388820	0.803713	3.057178e-49	-8.615850e-47
Msa0056070	Msa1388820	0.956267	4.414285e-114	-8.615850e-47
Msa0076310	Msa1388820	0.820506	6.617936e-53	-8.615850e-47
Msa0110970	Msa1388820	0.841463	4.680781e-58	-8.615850e-47
Msa0157290	Msa1388820	0.809084	2.253236e-50	-8.615850e-47
Msa0238890	Msa1388820	0.809284	2.041884e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1388820	MtrunA17_Chr1g0148321	94.808	1117	23	3	1	1116	1	1083	0.0	2180
Msa1388820	MtrunA17_Chr3g0138791	73.859	1117	257	3	1	1116	1	1083	0.0	1647
Msa1388820	MtrunA17_Chr3g0123951	29.825	342	188	10	108	408	24	354	6.40e-34	134
Msa1388820	MtrunA17_Chr8g0382161	29.524	315	174	7	108	382	24	330	3.06e-32	129
Msa1388820	MtrunA17_Chr3g0119031	29.429	350	210	10	107	447	199	520	4.43e-30	129
Msa1388820	MtrunA17_Chr5g0439971	29.143	350	211	10	107	447	204	525	7.63e-30	128
Msa1388820	MtrunA17_Chr1g0170261	31.119	286	181	8	107	383	201	479	4.35e-29	126
Msa1388820	MtrunA17_Chr6g0458441	29.900	301	168	10	106	383	126	406	5.57e-29	124
Msa1388820	MtrunA17_Chr6g0458421	29.293	297	179	10	106	385	28	310	1.17e-27	119
Msa1388820	MtrunA17_Chr5g0411271	29.293	297	174	11	107	385	154	432	1.21e-26	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1388820	AT3G49600.2	56.926	1119	425	12	1	1115	1	1066	0.0	1188
Msa1388820	AT3G49600.1	56.926	1119	425	12	1	1115	1	1066	0.0	1188
Msa1388820	AT3G49600.3	55.764	1119	417	13	1	1115	1	1045	0.0	1153
Msa1388820	AT2G22310.1	29.712	313	175	8	108	382	24	329	1.36e-31	128
Msa1388820	AT3G11910.4	29.714	350	209	10	107	447	197	518	7.96e-31	132
Msa1388820	AT3G11910.2	29.714	350	209	10	107	447	197	518	7.96e-31	132
Msa1388820	AT3G11910.3	29.714	350	209	10	107	447	198	519	8.10e-31	132
Msa1388820	AT3G11910.1	29.714	350	209	10	107	447	198	519	8.10e-31	132
Msa1388820	AT5G06600.1	29.714	350	210	10	107	447	199	521	1.77e-30	130
Msa1388820	AT5G06600.2	29.714	350	210	10	107	447	198	520	1.80e-30	130

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Find 252 sgRNAs with CRISPR-Local

Find 661 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAAAGACCGAGACAA+GGG	0.606853	tig0021196:+31539	Msa1388820:CDS
AAAATTTGGTATGCTTAAGA+TGG	0.445793	tig0021196:-34407	None:intergenic
AAAGGATACACAGCGTACCG+AGG	0.665910	tig0021196:+40378	Msa1388820:CDS
AAATAAAAGACCGAGACAAG+GGG	0.661443	tig0021196:+31540	Msa1388820:CDS
AAATGTTTCTGCGAAGAATG+GGG	0.715071	tig0021196:+37653	Msa1388820:CDS
AACAATTGAATGAGAAGAAA+TGG	0.348131	tig0021196:+40513	Msa1388820:three_prime_UTR
AAGCCTCCAAGATTGATCTA+GGG	0.589124	tig0021196:-39160	None:intergenic
AAGCGGGTGCTTGTTCCCGA+GGG	0.558588	tig0021196:+36833	Msa1388820:CDS
AAGGATACACAGCGTACCGA+GGG	0.636484	tig0021196:+40379	Msa1388820:CDS
AAGGGAACTGCAGCTAATAG+TGG	0.609721	tig0021196:+34123	Msa1388820:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATACAATGAGCAGATCAA+CGG	+	tig0021196:31507-31526	Msa1388820:exon	30.0%
AAAAATAAAAGACCGAGACA+AGG	+	tig0021196:31538-31557	Msa1388820:CDS	30.0%
AAAATAAAAGACCGAGACAA+GGG	+	tig0021196:31539-31558	Msa1388820:CDS	30.0%
TATTGGTACTTTCTTTGTGT+AGG	+	tig0021196:31654-31673	Msa1388820:intron	30.0%
TTCTCCATTTGTAAAAACGT+TGG	+	tig0021196:32102-32121	Msa1388820:CDS	30.0%
ATTTGTAAAAACGTTGGAGT+TGG	+	tig0021196:32108-32127	Msa1388820:CDS	30.0%
TATAAATCTCTGTCTTTGTG+GGG	+	tig0021196:32339-32358	Msa1388820:intron	30.0%
AACACAAACACTTCAAGAAA+AGG	-	tig0021196:32964-32983	None:intergenic	30.0%
TTTGTGAGTCATGTAAAACA+AGG	+	tig0021196:33207-33226	Msa1388820:CDS	30.0%
TTGTGAGTCATGTAAAACAA+GGG	+	tig0021196:33208-33227	Msa1388820:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0021196	gene	30529	40680	30529	ID=Msa1388820;Name=Msa1388820
tig0021196	mRNA	30529	40680	30529	ID=Msa1388820-mRNA-1;Parent=Msa1388820;Name=Msa1388820-mRNA-1;_AED=0.06;_eAED=0.06;_QI=91\|0.78\|0.86\|0.93\|0.92\|0.86\|15\|227\|1116
tig0021196	exon	30529	30598	30529	ID=Msa1388820-mRNA-1:exon:11333;Parent=Msa1388820-mRNA-1
tig0021196	exon	31493	31593	31493	ID=Msa1388820-mRNA-1:exon:11334;Parent=Msa1388820-mRNA-1
tig0021196	exon	31676	32272	31676	ID=Msa1388820-mRNA-1:exon:11335;Parent=Msa1388820-mRNA-1
tig0021196	exon	33058	33313	33058	ID=Msa1388820-mRNA-1:exon:11336;Parent=Msa1388820-mRNA-1
tig0021196	exon	34000	34736	34000	ID=Msa1388820-mRNA-1:exon:11337;Parent=Msa1388820-mRNA-1
tig0021196	exon	34916	35024	34916	ID=Msa1388820-mRNA-1:exon:11338;Parent=Msa1388820-mRNA-1
tig0021196	exon	35231	35263	35231	ID=Msa1388820-mRNA-1:exon:11339;Parent=Msa1388820-mRNA-1
tig0021196	exon	35586	35833	35586	ID=Msa1388820-mRNA-1:exon:11340;Parent=Msa1388820-mRNA-1
tig0021196	exon	36715	36996	36715	ID=Msa1388820-mRNA-1:exon:11341;Parent=Msa1388820-mRNA-1
tig0021196	exon	37078	37276	37078	ID=Msa1388820-mRNA-1:exon:11342;Parent=Msa1388820-mRNA-1
tig0021196	exon	37434	37505	37434	ID=Msa1388820-mRNA-1:exon:11343;Parent=Msa1388820-mRNA-1
tig0021196	exon	37617	37847	37617	ID=Msa1388820-mRNA-1:exon:11344;Parent=Msa1388820-mRNA-1
tig0021196	exon	39056	39319	39056	ID=Msa1388820-mRNA-1:exon:11345;Parent=Msa1388820-mRNA-1
tig0021196	exon	40130	40277	40130	ID=Msa1388820-mRNA-1:exon:11346;Parent=Msa1388820-mRNA-1
tig0021196	exon	40359	40680	40359	ID=Msa1388820-mRNA-1:exon:11347;Parent=Msa1388820-mRNA-1
tig0021196	five_prime_UTR	30529	30598	30529	ID=Msa1388820-mRNA-1:five_prime_utr;Parent=Msa1388820-mRNA-1
tig0021196	five_prime_UTR	31493	31513	31493	ID=Msa1388820-mRNA-1:five_prime_utr;Parent=Msa1388820-mRNA-1
tig0021196	CDS	31514	31593	31514	ID=Msa1388820-mRNA-1:cds;Parent=Msa1388820-mRNA-1
tig0021196	CDS	31676	32272	31676	ID=Msa1388820-mRNA-1:cds;Parent=Msa1388820-mRNA-1
tig0021196	CDS	33058	33313	33058	ID=Msa1388820-mRNA-1:cds;Parent=Msa1388820-mRNA-1
tig0021196	CDS	34000	34736	34000	ID=Msa1388820-mRNA-1:cds;Parent=Msa1388820-mRNA-1
tig0021196	CDS	34916	35024	34916	ID=Msa1388820-mRNA-1:cds;Parent=Msa1388820-mRNA-1
tig0021196	CDS	35231	35263	35231	ID=Msa1388820-mRNA-1:cds;Parent=Msa1388820-mRNA-1
tig0021196	CDS	35586	35833	35586	ID=Msa1388820-mRNA-1:cds;Parent=Msa1388820-mRNA-1
tig0021196	CDS	36715	36996	36715	ID=Msa1388820-mRNA-1:cds;Parent=Msa1388820-mRNA-1
tig0021196	CDS	37078	37276	37078	ID=Msa1388820-mRNA-1:cds;Parent=Msa1388820-mRNA-1
tig0021196	CDS	37434	37505	37434	ID=Msa1388820-mRNA-1:cds;Parent=Msa1388820-mRNA-1
tig0021196	CDS	37617	37847	37617	ID=Msa1388820-mRNA-1:cds;Parent=Msa1388820-mRNA-1
tig0021196	CDS	39056	39319	39056	ID=Msa1388820-mRNA-1:cds;Parent=Msa1388820-mRNA-1
tig0021196	CDS	40130	40277	40130	ID=Msa1388820-mRNA-1:cds;Parent=Msa1388820-mRNA-1
tig0021196	CDS	40359	40453	40359	ID=Msa1388820-mRNA-1:cds;Parent=Msa1388820-mRNA-1
tig0021196	three_prime_UTR	40454	40680	40454	ID=Msa1388820-mRNA-1:three_prime_utr;Parent=Msa1388820-mRNA-1

Gene Sequence

>Msa1388820

ATGAGCAGATCAACGGCTCGGGGTAAAAATAAAAGACCGAGACAAGGGGATGATGATACCGGAACTTCAGAAATATTGAGGAAAATATACAAAACAGGCGTAGCAACTGATGATGATATGAGCAAACTGTATATGATTACAAAGCCAGTCTGTTCAGGTTGTCGTGTTAATACTAAAGACAATCCGAATTGCTTCTGTGCATTGGTTCCGCCTCCAAGTGGAACGCGGAAGTCTGGCATATGGCAGAAGATATCTGATTTTGTTGATAGTCTTGGCTTTGACCCAAACACGGAACTTCGTGAATCTGCTAATTCACCCGCAGGACTCACAAATCTTGGAGCAACGTGTTATGCTAACAGCATACTCCAATGCTTGTATATGAATAAACGTTTTCGAGAAGGATTATTTTCTGTTGAACCAGATATTTTTCAGCAACAACCGGTGTTAGATCAATTGGCTCGGCTTTTTGCTCAGTTGCATTTAAGTAAAAAGGCTTTCATAGATTCTTCTCCATTTGTAAAAACGTTGGAGTTGGACAATGAAGTTCAGCAAGATAGCCATGAGTTCCTGACATTGCTTCTGTCATTGCTAGAGCGCTGCCTTAGTCGTTCCAAAATTTCCAAGGCAAGAACGATAGTTCAAGATCTTTTCCGGGGAAGTGTGTCTCATGTGACAACGTGCTCACAATGTGGAAGAGACTCTGAAGCTTCTTCCAAAATGGAAGACTTCTATGAGTTGGAGTTGAATGTCAAGGGATTGAAAAGTTTAGACGAGAGCTTAGATGATTACCTCACTGTTGAAGAGCTTAATGGAGACAATCAATATTTTTGTGAGTCATGTAAAACAAGGGTTGATGCTACTCGCAGCATCAAGCTGCGAACATTACCTGATGTGCTTAATTTTCAGCTTAAGCGCTATGTCTTCCTTCCAAAGACAACAACAAAGAAGAAAGTTACTTCTCCATTTTCATTCCCCGCTGAACTTAGTATGCACCACAGATTGTCTGAGCCATCTCAGTCTGAATTGATATATGACTTGTCAGCTGTTCTGATACACAAGGGAACTGCAGCTAATAGTGGTCATTACATTGCACACATCAAGGATGTGAACACAGGGCAATGGTGGGAATTTGATGATGAGCTTGTTACTAACTTGGGCCGTTGTCCATTTTCAGAAGAAGCTTCATGCTCTGCTTCTAAATCTGTTAAGAATGATCTGGATCATTCTAATTTCTCTGAAGCAAGGGTAGCTGACAGTAATGGAAGTGGTTCAAATGTAAAAGTTTCACAATCTTTACCCATGGAGACATTTTCATCTAGTGATGCATATATGTTGATGTACCATCTTAAGCATACCAAATTTTTTAGTGAGAACGGGGGAATGGAAACTAGTGCTAATCATACTGAAACAGTTGATGTTCCAATTACTGCACAAGATAATGATTGTCTTCCTTCTCATTTTTGTGAAGAGATTCAAAATTTCAATGCCTCATATCTTGATACTTGCCAGCAGTACAACCATAGGAAAGAGGTAGAATTGAGTCGTATCAGTGAGAGGAGAGAAGAAGTTCGATCTGTTTTAGCTGAAGCTCCTGTTAAACCACTGGAGCAACCGTATTTTTGGATTTATAGTGACTGGCTTCGTCAATGGGCTGAAAATGTTACTCCAAGTGCTATTGACAACACATCTATCCAATGTTCACACGGTAAAGTCCCAGTGTCAAAGGTTACCTCGACAAAGCGACTGTCTTCTAAAGCATGGGATAAGTTACTGTCTAAGAGTGAGGAGCATTGTGAGATGGCAAAGGGTAGGTATGGTGGAGGGCCAACACTTTCTCACGAGGACTGCTGTTTGGACTGTCTGATTGATGGGGCTCGGAATGTCGTGTCAGCAGACACTTATCGGGATCAAAGAGAATCATTTAAGCAACTTGCACGGGATATTCTTGATGGAAAAAACGTAGATGGAAAGTACTACGTGTCTAGATCATGGTATGATTGCAAATCTTTTCTCTTGTCGTTTCTGTTTCTTCAGAAAGGAATAAGGGGTGATGGAGATAAGTTGCAGCAGTGGTGGAAAAGAAAAGTTGCCGATGCTCCATCTGAAGCTGATTCTGGACCAACAGCAGCTATTAGTTGTCCACATGGACAACTTATGCCTGAGCAAGCAACTGGTGCTAAGCGGGTGCTTGTTCCCGAGGGTTTTTGGCTCTTCTTATATGAAGATGCCACTTCTGTGAAAAATGATCTTCTGGTCTGCCCTACATTTCATTTAGACTCCAAAGAGTGCTCTGAATGCAGTAGCGAATTATCTGAAGTGTTTTGCATGGAGGACTCTATGAGGTTATTAAAACAAAGGCAGCGTCAGAGTCATGAGAAGTTGTTCAATGGGAAAAGTATGCCCCTCTCTCTAGATTGCACATATTTCTTAGTTCCTTCCTCTTGGATTTCAAAATGGAGAACGTATATCAACCCAGCTGTGAAGAATTCTGACACACCTGAAACATTAAATGTGGTGATTGGTGCACTGCTCTGTGAAAAGCACTCACGACTCATTGAAAGGCCTCCTGAACTGATTCTCAGACGTGGTGCTATATTTCCAAGGGAGTCTTCTGCAGGTGGCTTAACCATCATATCTGAGAATGATTGGAAATGTTTCTGCGAAGAATGGGGTGCTACTGAAACCCAAGGAGTATCTGCAAAGATTGAGAAAATTAATGATTCGGTGAATGCTACATCTGGATCTTGTGAAGAGATGGCAATATGTGAGGACCAGTTGGCCAACTGGGATAAGGGGAATAATGAAAGTGGGAATGGTCAATTTTCGATCAAGACTTGTCCTGAGGTTTGTGAAAGTTGCATTGGAGAAAAGGAAAGCTGTGAGTTAGTGCATAAACTTAATTATTCCAATGAGGATATATGTGTAATTCTTGTACGCGGAAAGGAGGTCCCTAGATCAATCTTGGAGGCTTCAAAGGGATTTGTTGAAACAGATCGACGGGTTTCTAAACGCTCCAGGAAGATTAAAAATGGGAGTTCAATTAATCTAAAAGTGTCTGCTTCAACATCAATTTACCAGCTGAAAATGATGATATGGGAATCCTTTGGGGTTGTCAAAGAAAATCAGATACTACAAAAAGGTGATATAACAATTGATCACATTGACGAAAATACTACACTTGTGGACGTTAACATATTTGCTGGAGATCAGATTATTGTGAGGGACTCTGAGATCCATGAAAATCGAGATATTGCTGATGAGCTGTGTAACGAGAAAAAGGATACACAGCGTACCGAGGGAGGGTTTCGTGGAACACTTTTGACTTCAAATGTTTCATCTCAGGTTGTGTAG

Protein sequence

>Msa1388820

MSRSTARGKNKRPRQGDDDTGTSEILRKIYKTGVATDDDMSKLYMITKPVCSGCRVNTKDNPNCFCALVPPPSGTRKSGIWQKISDFVDSLGFDPNTELRESANSPAGLTNLGATCYANSILQCLYMNKRFREGLFSVEPDIFQQQPVLDQLARLFAQLHLSKKAFIDSSPFVKTLELDNEVQQDSHEFLTLLLSLLERCLSRSKISKARTIVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYELELNVKGLKSLDESLDDYLTVEELNGDNQYFCESCKTRVDATRSIKLRTLPDVLNFQLKRYVFLPKTTTKKKVTSPFSFPAELSMHHRLSEPSQSELIYDLSAVLIHKGTAANSGHYIAHIKDVNTGQWWEFDDELVTNLGRCPFSEEASCSASKSVKNDLDHSNFSEARVADSNGSGSNVKVSQSLPMETFSSSDAYMLMYHLKHTKFFSENGGMETSANHTETVDVPITAQDNDCLPSHFCEEIQNFNASYLDTCQQYNHRKEVELSRISERREEVRSVLAEAPVKPLEQPYFWIYSDWLRQWAENVTPSAIDNTSIQCSHGKVPVSKVTSTKRLSSKAWDKLLSKSEEHCEMAKGRYGGGPTLSHEDCCLDCLIDGARNVVSADTYRDQRESFKQLARDILDGKNVDGKYYVSRSWYDCKSFLLSFLFLQKGIRGDGDKLQQWWKRKVADAPSEADSGPTAAISCPHGQLMPEQATGAKRVLVPEGFWLFLYEDATSVKNDLLVCPTFHLDSKECSECSSELSEVFCMEDSMRLLKQRQRQSHEKLFNGKSMPLSLDCTYFLVPSSWISKWRTYINPAVKNSDTPETLNVVIGALLCEKHSRLIERPPELILRRGAIFPRESSAGGLTIISENDWKCFCEEWGATETQGVSAKIEKINDSVNATSGSCEEMAICEDQLANWDKGNNESGNGQFSIKTCPEVCESCIGEKESCELVHKLNYSNEDICVILVRGKEVPRSILEASKGFVETDRRVSKRSRKIKNGSSINLKVSASTSIYQLKMMIWESFGVVKENQILQKGDITIDHIDENTTLVDVNIFAGDQIIVRDSEIHENRDIADELCNEKKDTQRTEGGFRGTLLTSNVSSQVV*