AlfalfaGEDB | Msa0007480

M. sativa cultivar zhongmu-4 / Msa0007480

KEGG: K11858
GO: GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0007275 GO:0008150 GO:0009791 GO:0010154 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0070013
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0007480	sp\|Q9SCJ9\|UBP26_ARATH	58.523	176	71	1	56	231	893	1066	9.40e-57	197

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003700	Msa0007480	0.854919	8.928011e-62	-8.615850e-47
Msa0007480	Msa0007520	0.916235	2.273654e-85	-8.615850e-47
Msa0007480	Msa0017510	0.851910	6.522031e-61	-8.615850e-47
Msa0007480	Msa0026130	0.811212	7.838243e-51	-8.615850e-47
Msa0007480	Msa0027230	0.823595	1.272758e-53	-8.615850e-47
Msa0007480	Msa0028420	0.809166	2.164352e-50	-8.615850e-47
Msa0007480	Msa0028640	0.815968	7.044663e-52	-8.615850e-47
Msa0007480	Msa0030180	0.801851	7.408669e-49	-8.615850e-47
Msa0007480	Msa0040240	0.824579	7.478485e-54	-8.615850e-47
Msa0007480	Msa0046100	0.807735	4.371370e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0007480	MtrunA17_Chr1g0148321	96.104	231	9	0	2	232	853	1083	1.11e-153	454
Msa0007480	MtrunA17_Chr3g0138791	77.056	231	53	0	2	232	853	1083	1.15e-116	357

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0007480	AT3G49600.2	58.523	176	71	1	56	231	893	1066	9.55e-58	197
Msa0007480	AT3G49600.1	58.523	176	71	1	56	231	893	1066	9.55e-58	197
Msa0007480	AT3G49600.3	58.523	176	71	1	56	231	872	1045	1.06e-57	197

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Find 241 sgRNAs with CRISPR-Local

Find 660 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAAAGACCGAGACAA+GGG	0.606853	1_1:-10749592	Msa0007480:five_prime_UTR
AAAATTTGGTATGCTTAAGA+TGG	0.445793	1_1:+10746735	None:intergenic
AAAGGATACACAGCGTACCG+AGG	0.665910	1_1:-10740768	Msa0007480:CDS
AAATAAAAGACCGAGACAAG+GGG	0.661443	1_1:-10749591	Msa0007480:five_prime_UTR
AACAATTGAATGAGAAGAAA+TGG	0.348131	1_1:-10740633	Msa0007480:three_prime_UTR
AAGCCTCCAAGATTGATCTA+GGG	0.589124	1_1:+10741983	None:intergenic
AAGCGGGTGCTTGTTCCCGA+GGG	0.558588	1_1:-10744307	Msa0007480:five_prime_UTR
AAGGATACACAGCGTACCGA+GGG	0.636484	1_1:-10740767	Msa0007480:CDS
AAGGATGTGAACACGGGCAA+TGG	0.535806	1_1:-10746976	Msa0007480:five_prime_UTR
AAGGGAACTGCAGCTAATAG+TGG	0.609721	1_1:-10747018	Msa0007480:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGTATATCAAGTTCATACA+TGG	-	chr1_1:10741185-10741204	Msa0007480:intron	30.0%
TTATACAATGAGCAGATCAA+CGG	-	chr1_1:10741475-10741494	Msa0007480:intron	30.0%
AAAAATAAAAGACCGAGACA+AGG	-	chr1_1:10741506-10741525	Msa0007480:intron	30.0%
AAAATAAAAGACCGAGACAA+GGG	-	chr1_1:10741507-10741526	Msa0007480:intron	30.0%
TATTGGTACTTTCTTTGTGT+AGG	-	chr1_1:10741622-10741641	Msa0007480:intron	30.0%
TTCTCCATTTGTAAAAACGT+TGG	-	chr1_1:10742070-10742089	Msa0007480:CDS	30.0%
ATTTGTAAAAACGTTGGAGT+TGG	-	chr1_1:10742076-10742095	Msa0007480:CDS	30.0%
TATAAATCTCTGTCTTTGTG+GGG	-	chr1_1:10742307-10742326	Msa0007480:intron	30.0%
AACACAAACACTTCAAGAAA+AGG	+	chr1_1:10742929-10742948	None:intergenic	30.0%
TTTGTGAGTCATGTAAAACA+AGG	-	chr1_1:10743172-10743191	Msa0007480:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	10740488	10750633	10740488	ID=Msa0007480;Name=Msa0007480
chr1_1	mRNA	10740488	10750633	10740488	ID=Msa0007480-mRNA-1;Parent=Msa0007480;Name=Msa0007480-mRNA-1;_AED=0.07;_eAED=0.07;_QI=2639\|1\|1\|1\|0.84\|0.71\|14\|227\|232
chr1_1	exon	10740488	10740809	10740488	ID=Msa0007480-mRNA-1:exon:3933;Parent=Msa0007480-mRNA-1
chr1_1	exon	10740891	10741038	10740891	ID=Msa0007480-mRNA-1:exon:3932;Parent=Msa0007480-mRNA-1
chr1_1	exon	10741846	10742109	10741846	ID=Msa0007480-mRNA-1:exon:3931;Parent=Msa0007480-mRNA-1
chr1_1	exon	10743316	10743545	10743316	ID=Msa0007480-mRNA-1:exon:3930;Parent=Msa0007480-mRNA-1
chr1_1	exon	10743657	10743728	10743657	ID=Msa0007480-mRNA-1:exon:3929;Parent=Msa0007480-mRNA-1
chr1_1	exon	10743886	10744084	10743886	ID=Msa0007480-mRNA-1:exon:3928;Parent=Msa0007480-mRNA-1
chr1_1	exon	10744166	10744447	10744166	ID=Msa0007480-mRNA-1:exon:3927;Parent=Msa0007480-mRNA-1
chr1_1	exon	10745400	10745578	10745400	ID=Msa0007480-mRNA-1:exon:3926;Parent=Msa0007480-mRNA-1
chr1_1	exon	10746140	10746248	10746140	ID=Msa0007480-mRNA-1:exon:3925;Parent=Msa0007480-mRNA-1
chr1_1	exon	10746428	10747163	10746428	ID=Msa0007480-mRNA-1:exon:3924;Parent=Msa0007480-mRNA-1
chr1_1	exon	10747843	10748098	10747843	ID=Msa0007480-mRNA-1:exon:3923;Parent=Msa0007480-mRNA-1
chr1_1	exon	10748881	10749477	10748881	ID=Msa0007480-mRNA-1:exon:3922;Parent=Msa0007480-mRNA-1
chr1_1	exon	10749560	10749660	10749560	ID=Msa0007480-mRNA-1:exon:3921;Parent=Msa0007480-mRNA-1
chr1_1	exon	10750564	10750633	10750564	ID=Msa0007480-mRNA-1:exon:3920;Parent=Msa0007480-mRNA-1
chr1_1	five_prime_UTR	10750564	10750633	10750564	ID=Msa0007480-mRNA-1:five_prime_utr;Parent=Msa0007480-mRNA-1
chr1_1	five_prime_UTR	10749560	10749660	10749560	ID=Msa0007480-mRNA-1:five_prime_utr;Parent=Msa0007480-mRNA-1
chr1_1	five_prime_UTR	10748881	10749477	10748881	ID=Msa0007480-mRNA-1:five_prime_utr;Parent=Msa0007480-mRNA-1
chr1_1	five_prime_UTR	10747843	10748098	10747843	ID=Msa0007480-mRNA-1:five_prime_utr;Parent=Msa0007480-mRNA-1
chr1_1	five_prime_UTR	10746428	10747163	10746428	ID=Msa0007480-mRNA-1:five_prime_utr;Parent=Msa0007480-mRNA-1
chr1_1	five_prime_UTR	10746140	10746248	10746140	ID=Msa0007480-mRNA-1:five_prime_utr;Parent=Msa0007480-mRNA-1
chr1_1	five_prime_UTR	10745400	10745578	10745400	ID=Msa0007480-mRNA-1:five_prime_utr;Parent=Msa0007480-mRNA-1
chr1_1	five_prime_UTR	10744166	10744447	10744166	ID=Msa0007480-mRNA-1:five_prime_utr;Parent=Msa0007480-mRNA-1
chr1_1	five_prime_UTR	10743886	10744084	10743886	ID=Msa0007480-mRNA-1:five_prime_utr;Parent=Msa0007480-mRNA-1
chr1_1	five_prime_UTR	10743657	10743728	10743657	ID=Msa0007480-mRNA-1:five_prime_utr;Parent=Msa0007480-mRNA-1
chr1_1	five_prime_UTR	10743508	10743545	10743508	ID=Msa0007480-mRNA-1:five_prime_utr;Parent=Msa0007480-mRNA-1
chr1_1	CDS	10743316	10743507	10743316	ID=Msa0007480-mRNA-1:cds;Parent=Msa0007480-mRNA-1
chr1_1	CDS	10741846	10742109	10741846	ID=Msa0007480-mRNA-1:cds;Parent=Msa0007480-mRNA-1
chr1_1	CDS	10740891	10741038	10740891	ID=Msa0007480-mRNA-1:cds;Parent=Msa0007480-mRNA-1
chr1_1	CDS	10740715	10740809	10740715	ID=Msa0007480-mRNA-1:cds;Parent=Msa0007480-mRNA-1
chr1_1	three_prime_UTR	10740488	10740714	10740488	ID=Msa0007480-mRNA-1:three_prime_utr;Parent=Msa0007480-mRNA-1

Gene Sequence

>Msa0007480

ATGTTTCTGCGAAGAATGGGTGCTACTGAAACCCAAGGAGTATCTGCAAAGATTGAGAAAATTAATGATTCGGTGAATGCTACATCTGGATCTTGTGAAGAGATGGCAATATGTGAGGACCAGTTGGCCAACTGGGATAAGGGGAATAATGAAAGTGGGAATGGTCAATTTTCGATCAAGACTTGTCCTGAGGTTTGTGAAAGTTGCATTGGAGAAAAGGAAAGCTGTGAGTTAGTGCATAAACTTAATTATTCCAATGAGGATATATGTGTAATTCTTGTACGCGGAAAGGAGGTCCCTAGATCAATCTTGGAGGCTTCAAAGGGATTTGTTGAAACAGATCGACGGGTTTCTAAACGCTCCAGGAAGATTAAAAATGGGAGTTCAATTAATCTAAAAGTGTCTGCTTCAACATCAATTTACCAGCTGAAAATGATGATATGGGAATCCTTTGGGGTTGTCAAAGAAAATCAGATACTACAAAAAGGTGATATAACAATTGATCACATTGACGAAAATACTACACTTGTGGACGTTAACATATTTGCTGGAGATCAGATTATTGTGAGGGACTCTGAGATCCATGAAAATCGAGATATTGCTGATGAGCTGTGTAACGAGAAAAAGGATACACAGCGTACCGAGGGAGGGTTTCGTGGAACACTTTTGACTTCAAATGTTTCATCTCAGGTTGTGTAG

Protein sequence

>Msa0007480

MFLRRMGATETQGVSAKIEKINDSVNATSGSCEEMAICEDQLANWDKGNNESGNGQFSIKTCPEVCESCIGEKESCELVHKLNYSNEDICVILVRGKEVPRSILEASKGFVETDRRVSKRSRKIKNGSSINLKVSASTSIYQLKMMIWESFGVVKENQILQKGDITIDHIDENTTLVDVNIFAGDQIIVRDSEIHENRDIADELCNEKKDTQRTEGGFRGTLLTSNVSSQVV*