AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0007480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0007480 MtrunA17_Chr1g0148321 96.104 231 9 0 2 232 853 1083 1.11e-153 454
Msa0007480 MtrunA17_Chr3g0138791 77.056 231 53 0 2 232 853 1083 1.15e-116 357
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0007480 AT3G49600.2 58.523 176 71 1 56 231 893 1066 9.55e-58 197
Msa0007480 AT3G49600.1 58.523 176 71 1 56 231 893 1066 9.55e-58 197
Msa0007480 AT3G49600.3 58.523 176 71 1 56 231 872 1045 1.06e-57 197

Find 241 sgRNAs with CRISPR-Local

Find 660 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTCTTGCCTTGGAAATTT+TGG 0.078415 1_1:+10748925 None:intergenic
CTCATAGAAGTCTTCCATTT+TGG 0.162396 1_1:+10748041 None:intergenic
GCCCTAGTAATGGCAAATTT+TGG 0.167402 1_1:-10740540 Msa0007480:three_prime_UTR
ATCACCACATTTAATGTTTC+AGG 0.169289 1_1:+10743908 None:intergenic
TCATTATCTTGTGCAGTAAT+TGG 0.193512 1_1:+10746656 None:intergenic
CTCACTGTTGAAGAGCTTAA+TGG 0.199425 1_1:-10747964 Msa0007480:five_prime_UTR
CTTCCTCTTGGATTTCAAAA+TGG 0.232071 1_1:-10743970 Msa0007480:five_prime_UTR
ACCAGCTGAAAATGATGATA+TGG 0.234152 1_1:-10741858 Msa0007480:CDS
ATACCTAGTGTTGGATGTTT+TGG 0.236867 1_1:-10740570 Msa0007480:three_prime_UTR
ACAGTTGCATTTAAGTAAAA+AGG 0.242000 1_1:-10749065 Msa0007480:five_prime_UTR
CATGAAGCTTCTTCTGAAAA+TGG 0.265957 1_1:+10746911 None:intergenic
CTCTGAAGCTTCTTCCAAAA+TGG 0.266543 1_1:-10748055 Msa0007480:five_prime_UTR
GCTCCATCTGAAGCTGATTC+TGG 0.267792 1_1:-10744391 Msa0007480:five_prime_UTR
TGTTTGGACTGTCTGATTGA+TGG 0.310376 1_1:-10745520 Msa0007480:five_prime_UTR
TGATGATATGGGAATCCTTT+GGG 0.320727 1_1:-10741846 Msa0007480:CDS
AGTTCAGCGGGGAATGAAAA+TGG 0.325298 1_1:+10747114 None:intergenic
GACGAACGAATGAATGAGTT+TGG 0.330367 1_1:+10750611 None:intergenic
TGAGCTGTGTAACGAGAAAA+AGG 0.337284 1_1:-10740786 Msa0007480:CDS
GGTTGCTCCAGTGGTTTAAC+AGG 0.343117 1_1:+10746485 None:intergenic
GAAGCCTCCAAGATTGATCT+AGG 0.343119 1_1:+10741982 None:intergenic
CAATCTTTGCAGATACTCCT+TGG 0.344327 1_1:+10743453 None:intergenic
AACAATTGAATGAGAAGAAA+TGG 0.348131 1_1:-10740633 Msa0007480:three_prime_UTR
ATGGGATAAGTTACTGTCTA+AGG 0.355200 1_1:-10746139 Msa0007480:intron
ACTGCATTCAGAGCACTCTT+TGG 0.357896 1_1:+10744207 None:intergenic
GATTCACGAAGTTCCGTGTT+TGG 0.359470 1_1:+10749253 None:intergenic
ATTACAAAGCCAGTCTGTTC+AGG 0.361510 1_1:-10749400 Msa0007480:five_prime_UTR
CCTCAATATTTCTGAAGTTC+CGG 0.364596 1_1:+10749559 None:intergenic
ATTTCTTAGTTCCTTCCTCT+TGG 0.365604 1_1:-10743982 Msa0007480:five_prime_UTR
GACTTCAAATGTTTCATCTC+AGG 0.367963 1_1:-10740723 Msa0007480:CDS
CCATCATATCTGAGAATGAT+TGG 0.370225 1_1:-10743510 Msa0007480:five_prime_UTR
CCTTATCCCAGTTGGCCAAC+TGG 0.370897 1_1:+10743366 None:intergenic
TTGAACTATCGTTCTTGCCT+TGG 0.374035 1_1:+10748916 None:intergenic
GTCGAGGTAACCTTTGACAC+TGG 0.381143 1_1:+10746183 None:intergenic
GTTTGGACTGTCTGATTGAT+GGG 0.382003 1_1:-10745519 Msa0007480:five_prime_UTR
TTCCAAAATTTGCCATTACT+AGG 0.382996 1_1:+10740538 None:intergenic
TTCTCACGAGGACTGCTGTT+TGG 0.384368 1_1:-10745536 Msa0007480:five_prime_UTR
TGAAAGTTGCATTGGAGAAA+AGG 0.384973 1_1:-10742082 Msa0007480:CDS
CCAAGTGGAACGCGGAAGTC+TGG 0.385243 1_1:-10749322 Msa0007480:five_prime_UTR
TGTATGTATATATATACTTC+AGG 0.389422 1_1:-10740663 Msa0007480:three_prime_UTR
CTTGCACGGGATATTCTTGA+TGG 0.392912 1_1:-10745439 Msa0007480:five_prime_UTR
GAAAATCAGATACTACAAAA+AGG 0.393670 1_1:-10741007 Msa0007480:CDS
AATCTTTGCAGATACTCCTT+GGG 0.394072 1_1:+10743454 None:intergenic
TCGTCTTTCCTTCTTCTCTC+TGG 0.395110 1_1:-10750563 Msa0007480:intron
TCGTGTCAGCAGACACTTAT+CGG 0.397648 1_1:-10745486 Msa0007480:five_prime_UTR
CAGTTGGCCAACTGGGATAA+GGG 0.403224 1_1:-10743365 Msa0007480:CDS
GTGAGGACCAGTTGGCCAAC+TGG 0.404484 1_1:-10743373 Msa0007480:CDS
GTGTCAGAATTCTTCACAGC+TGG 0.405629 1_1:+10743932 None:intergenic
CCAATCATTCTCAGATATGA+TGG 0.406599 1_1:+10743510 None:intergenic
CCCGCAGGACTCACAAATCT+TGG 0.406645 1_1:-10749220 Msa0007480:five_prime_UTR
CCAGTTGGCCAACTGGGATA+AGG 0.409175 1_1:-10743366 Msa0007480:CDS
CTTTCCTATGGTTGTACTGC+TGG 0.413935 1_1:+10746570 None:intergenic
ATGATGATATGGGAATCCTT+TGG 0.419564 1_1:-10741847 Msa0007480:CDS
TAGTGACTGGCTTCGTCAAT+GGG 0.420428 1_1:-10746447 Msa0007480:five_prime_UTR
ACAACCGGTGTTAGATCAAT+TGG 0.422700 1_1:-10749101 Msa0007480:five_prime_UTR
TGATGAGCTTGTTACTAACT+TGG 0.424756 1_1:-10746942 Msa0007480:five_prime_UTR
GATTGAGAAAATTAATGATT+CGG 0.430266 1_1:-10743435 Msa0007480:CDS
AGCTGAAAATTAAGCACATC+AGG 0.432949 1_1:+10747868 None:intergenic
TAAATCTGTTAAGAATGATC+TGG 0.436916 1_1:-10746879 Msa0007480:five_prime_UTR
GTGGACGTTAACATATTTGC+TGG 0.436987 1_1:-10740944 Msa0007480:CDS
ATAGTGACTGGCTTCGTCAA+TGG 0.442998 1_1:-10746448 Msa0007480:five_prime_UTR
GACTTCCGCGTTCCACTTGG+AGG 0.443325 1_1:+10749325 None:intergenic
TCCGAATTGCTTCTGTGCAT+TGG 0.444163 1_1:-10749353 Msa0007480:five_prime_UTR
AAAATTTGGTATGCTTAAGA+TGG 0.445793 1_1:+10746735 None:intergenic
TGTAGGAAAATATACAAAAC+AGG 0.446519 1_1:-10749460 Msa0007480:intron
GATTCGGTGAATGCTACATC+TGG 0.447397 1_1:-10743419 Msa0007480:CDS
ACCAATGCACAGAAGCAATT+CGG 0.447609 1_1:+10749352 None:intergenic
ATCAATCTTGGAGGCTTCAA+AGG 0.447974 1_1:-10741977 Msa0007480:CDS
CATGAAAATCGAGATATTGC+TGG 0.451054 1_1:-10740890 Msa0007480:intron
TTGGAGTCTAAATGAAATGT+AGG 0.454424 1_1:+10744226 None:intergenic
GATAAGGGGAATAATGAAAG+TGG 0.455432 1_1:-10743350 Msa0007480:CDS
GGAGGTCCCTAGATCAATCT+TGG 0.456160 1_1:-10741989 Msa0007480:CDS
GTCATGAGAAGTTGTTCAAT+GGG 0.460741 1_1:-10744036 Msa0007480:five_prime_UTR
AATGAGCAGATCAACGGCTC+GGG 0.465077 1_1:-10749618 Msa0007480:five_prime_UTR
TTAGCACCAGTTGCTTGCTC+AGG 0.468543 1_1:+10744328 None:intergenic
AATTACACATATATCCTCAT+TGG 0.468861 1_1:+10742026 None:intergenic
ACCATGTAAATCCTTGTGCC+TGG 0.470791 1_1:-10740596 Msa0007480:three_prime_UTR
TCCAAAATTTGCCATTACTA+GGG 0.471190 1_1:+10740539 None:intergenic
GGAAATGTTTCTGCGAAGAA+TGG 0.472534 1_1:-10743489 Msa0007480:exon
CTTATGCCTGAGCAAGCAAC+TGG 0.475627 1_1:-10744334 Msa0007480:five_prime_UTR
TTGAATGAGAAGAAATGGTT+TGG 0.476781 1_1:-10740628 Msa0007480:three_prime_UTR
CCAGCTGAAAATGATGATAT+GGG 0.477880 1_1:-10741857 Msa0007480:CDS
CCAGACTTCCGCGTTCCACT+TGG 0.478055 1_1:+10749322 None:intergenic
GTTTATTCATATACAAGCAT+TGG 0.479324 1_1:+10749170 None:intergenic
CAGGTTTGTGAAAGTTGCAT+TGG 0.480717 1_1:-10742090 Msa0007480:CDS
AGTCATGAGAAGTTGTTCAA+TGG 0.482782 1_1:-10744037 Msa0007480:five_prime_UTR
GCAAGCAACTGGTGCTAAGC+GGG 0.487367 1_1:-10744323 Msa0007480:five_prime_UTR
TGGTCTTGTTGCCCTAGTAA+TGG 0.487747 1_1:-10740550 Msa0007480:three_prime_UTR
ATTATTCCCCTTATCCCAGT+TGG 0.488176 1_1:+10743358 None:intergenic
CGACATTACCAGAGAGAAGA+AGG 0.490403 1_1:+10750555 None:intergenic
CCATGTAAATCCTTGTGCCT+GGG 0.492793 1_1:-10740595 Msa0007480:three_prime_UTR
CCACGTCTGAGAATCAGTTC+AGG 0.492988 1_1:+10743682 None:intergenic
ACTGTCTGATTGATGGGGCT+CGG 0.493794 1_1:-10745513 Msa0007480:five_prime_UTR
ATCATTTAAGCAACTTGCAC+GGG 0.495522 1_1:-10745452 Msa0007480:five_prime_UTR
TCAATTCTACCTCTTTCCTA+TGG 0.497661 1_1:+10746558 None:intergenic
GATGTGAACACGGGCAATGG+TGG 0.497852 1_1:-10746973 Msa0007480:five_prime_UTR
GGCAATATGTGAGGACCAGT+TGG 0.509210 1_1:-10743381 Msa0007480:CDS
GGACTTTACCGTGTGAACAT+TGG 0.509591 1_1:+10746205 None:intergenic
TGTCAGAATTCTTCACAGCT+GGG 0.511169 1_1:+10743933 None:intergenic
TCAATCTTGGAGGCTTCAAA+GGG 0.512924 1_1:-10741976 Msa0007480:CDS
CCCAGGCACAAGGATTTACA+TGG 0.514041 1_1:+10740595 None:intergenic
AATGGAAGACTTCTATGAGT+TGG 0.518411 1_1:-10748037 Msa0007480:five_prime_UTR
TAAGCGGGTGCTTGTTCCCG+AGG 0.518885 1_1:-10744308 Msa0007480:five_prime_UTR
AGCGACTGTCTTCTAAAGCA+TGG 0.519590 1_1:-10746158 Msa0007480:five_prime_UTR
ATTCTAATTTCTCTGAAGCA+AGG 0.526792 1_1:-10746853 Msa0007480:five_prime_UTR
TGGTGCACTGCTCTGTGAAA+AGG 0.526975 1_1:-10743885 Msa0007480:intron
ACTAGATGAAAATGTCTCCA+TGG 0.527335 1_1:+10746778 None:intergenic
CGTGTCAGCAGACACTTATC+GGG 0.527748 1_1:-10745485 Msa0007480:five_prime_UTR
AATGAGAAGAAATGGTTTGG+TGG 0.528192 1_1:-10740625 Msa0007480:three_prime_UTR
CGTACCGAGGGAGGGTTTCG+TGG 0.528383 1_1:-10740755 Msa0007480:CDS
CCAAGATTTGTGAGTCCTGC+GGG 0.528495 1_1:+10749220 None:intergenic
ATCTGGATCTTGTGAAGAGA+TGG 0.530762 1_1:-10743402 Msa0007480:CDS
CGGTAAAGTCCCAGTGTCAA+AGG 0.533850 1_1:-10746193 Msa0007480:five_prime_UTR
GGGAATAATGAAAGTGGGAA+TGG 0.533939 1_1:-10743344 Msa0007480:CDS
TTCTAATTTCTCTGAAGCAA+GGG 0.534535 1_1:-10746852 Msa0007480:five_prime_UTR
AAGGATGTGAACACGGGCAA+TGG 0.535806 1_1:-10746976 Msa0007480:five_prime_UTR
GAACGCGGAAGTCTGGCATA+TGG 0.537243 1_1:-10749315 Msa0007480:five_prime_UTR
TGTTTCATCTCAGGTTGTGT+AGG 0.539372 1_1:-10740714 Msa0007480:exon
TCGAGGTAACCTTTGACACT+GGG 0.539858 1_1:+10746184 None:intergenic
CTGGCAAGTATCAAGATATG+AGG 0.540752 1_1:+10746589 None:intergenic
TTTGTAGGTTGCAGCAGTGG+TGG 0.543504 1_1:-10744432 Msa0007480:intron
GTATCATCATCCCCTTGTCT+CGG 0.543714 1_1:+10749581 None:intergenic
CATAAAATACAGTATGGTGG+AGG 0.543820 1_1:-10745568 Msa0007480:intron
CAACTTACAGAAGACTCCCT+TGG 0.543918 1_1:+10743649 None:intergenic
AGACAAGGGGATGATGATAC+CGG 0.544080 1_1:-10749578 Msa0007480:five_prime_UTR
ATTTGTTGAAACAGATCGAC+GGG 0.548666 1_1:-10741953 Msa0007480:CDS
GCAAGGGTAGCTGACAGTAA+TGG 0.549569 1_1:-10746836 Msa0007480:five_prime_UTR
GAAATGTTTCTGCGAAGAAT+GGG 0.550838 1_1:-10743488 Msa0007480:CDS
TGGTGCATACTAAGTTCAGC+GGG 0.551015 1_1:+10747102 None:intergenic
GCCTGGGGCATACCTAGTGT+TGG 0.553296 1_1:-10740579 Msa0007480:three_prime_UTR
TGAGGACCAGTTGGCCAACT+GGG 0.553449 1_1:-10743372 Msa0007480:CDS
TCACATGAGACACACTTCCC+CGG 0.555529 1_1:+10748885 None:intergenic
AGCACTCACGACTCATTGAA+AGG 0.555742 1_1:-10743708 Msa0007480:five_prime_UTR
TTCCGCGTTCCACTTGGAGG+CGG 0.556093 1_1:+10749328 None:intergenic
CTTCGTACAATACCTTTGGA+AGG 0.556884 1_1:+10747830 None:intergenic
AGTTTCACAATCTTTACCCA+TGG 0.557454 1_1:-10746795 Msa0007480:five_prime_UTR
TAGTCGTTCCAAAATTTCCA+AGG 0.557541 1_1:-10748933 Msa0007480:five_prime_UTR
AAGCGGGTGCTTGTTCCCGA+GGG 0.558588 1_1:-10744307 Msa0007480:five_prime_UTR
AGTACTACGTGTCTAGATCA+TGG 0.559586 1_1:-10745399 Msa0007480:intron
GCAATGACAGAAGCAATGTC+AGG 0.560586 1_1:+10748969 None:intergenic
CATGTAAATCCTTGTGCCTG+GGG 0.560924 1_1:-10740594 Msa0007480:three_prime_UTR
AATCATTTAAGCAACTTGCA+CGG 0.561749 1_1:-10745453 Msa0007480:five_prime_UTR
CTAGATGAAAATGTCTCCAT+GGG 0.563087 1_1:+10746779 None:intergenic
GATACACAGCGTACCGAGGG+AGG 0.565981 1_1:-10740764 Msa0007480:CDS
CCGGAACTTCAGAAATATTG+AGG 0.567216 1_1:-10749559 Msa0007480:intron
GAGTTGGAGTTGAATGTCAA+GGG 0.567832 1_1:-10748021 Msa0007480:five_prime_UTR
CGGTGTTAGATCAATTGGCT+CGG 0.573018 1_1:-10749096 Msa0007480:five_prime_UTR
AGCAAGCAACTGGTGCTAAG+CGG 0.573541 1_1:-10744324 Msa0007480:five_prime_UTR
TGTATGGCCAAAATTTCAAG+TGG 0.575617 1_1:-10740489 Msa0007480:three_prime_UTR
GACGGGTTTCTAAACGCTCC+AGG 0.575943 1_1:-10741936 Msa0007480:CDS
GAAACATTAAATGTGGTGAT+TGG 0.576683 1_1:-10743905 Msa0007480:five_prime_UTR
GCGACTGTCTTCTAAAGCAT+GGG 0.577989 1_1:-10746157 Msa0007480:five_prime_UTR
TGAAGCTCCTGTTAAACCAC+TGG 0.578029 1_1:-10746492 Msa0007480:five_prime_UTR
TGTAATTCTTGTACGCGGAA+AGG 0.578271 1_1:-10742010 Msa0007480:CDS
TAAACTTAATTATTCCAATG+AGG 0.578751 1_1:-10742040 Msa0007480:CDS
CAATGAGCAGATCAACGGCT+CGG 0.579415 1_1:-10749619 Msa0007480:five_prime_UTR
GAAGCAATGTCAGGAACTCA+TGG 0.579751 1_1:+10748978 None:intergenic
ATGTGAACACGGGCAATGGT+GGG 0.579838 1_1:-10746972 Msa0007480:five_prime_UTR
TGGAGTCTAAATGAAATGTA+GGG 0.580760 1_1:+10744227 None:intergenic
GATGAGCTTGTTACTAACTT+GGG 0.581232 1_1:-10746941 Msa0007480:five_prime_UTR
TTTGTGAGTCATGTAAAACA+AGG 0.582663 1_1:-10747927 Msa0007480:five_prime_UTR
TGACGAAAATACTACACTTG+TGG 0.582828 1_1:-10740963 Msa0007480:CDS
ATCAGCTTCAGATGGAGCAT+CGG 0.583704 1_1:+10744396 None:intergenic
TTTGCATGGAGGACTCTATG+AGG 0.584858 1_1:-10744165 Msa0007480:intron
GACGTGGTGCTATATTTCCA+AGG 0.585410 1_1:-10743666 Msa0007480:five_prime_UTR
CTTTGTGGATACTAGGCAGG+TGG 0.586554 1_1:-10743538 Msa0007480:intron
GCAGTACAACCATAGGAAAG+AGG 0.586771 1_1:-10746567 Msa0007480:five_prime_UTR
GCGCTATGTCTTCCTTCCAA+AGG 0.588885 1_1:-10747842 Msa0007480:intron
AAGCCTCCAAGATTGATCTA+GGG 0.589124 1_1:+10741983 None:intergenic
CTAGGTATGCCCCAGGCACA+AGG 0.590432 1_1:+10740585 None:intergenic
TGAGTTGGAGTTGAATGTCA+AGG 0.591934 1_1:-10748022 Msa0007480:five_prime_UTR
GGTCCAGAATCAGCTTCAGA+TGG 0.594090 1_1:+10744388 None:intergenic
TGGAGATCAGATTATTGTGA+GGG 0.594741 1_1:-10740924 Msa0007480:CDS
ACAAACTTGGCTTACCCCAA+AGG 0.594910 1_1:+10741831 None:intergenic
TTTGGACTGTCTGATTGATG+GGG 0.595037 1_1:-10745518 Msa0007480:five_prime_UTR
AGTTGGCCAACTGGGATAAG+GGG 0.595215 1_1:-10743364 Msa0007480:CDS
ACACGACAACCTGAACAGAC+TGG 0.595647 1_1:+10749391 None:intergenic
AATATGTGCAATCTAGAGAG+AGG 0.599323 1_1:+10744002 None:intergenic
GGTGTAGGTTATTAAAACAA+AGG 0.599431 1_1:-10744069 Msa0007480:intron
ATAAGGGGAATAATGAAAGT+GGG 0.600051 1_1:-10743349 Msa0007480:CDS
GTAGCTGACAGTAATGGAAG+TGG 0.604191 1_1:-10746830 Msa0007480:five_prime_UTR
ATATGTGCAATCTAGAGAGA+GGG 0.605170 1_1:+10744003 None:intergenic
GGTCCCTAGATCAATCTTGG+AGG 0.605301 1_1:-10741986 Msa0007480:CDS
GGGCTGAAAATGTTACTCCA+AGG 0.605343 1_1:-10746427 Msa0007480:intron
AGAAGACAGTCGCTTTGTCG+AGG 0.606192 1_1:+10746167 None:intergenic
AAAATAAAAGACCGAGACAA+GGG 0.606853 1_1:-10749592 Msa0007480:five_prime_UTR
GAATCTGCTAATTCACCCGC+AGG 0.608439 1_1:-10749235 Msa0007480:five_prime_UTR
AAGGGAACTGCAGCTAATAG+TGG 0.609721 1_1:-10747018 Msa0007480:five_prime_UTR
CTGGAGATCAGATTATTGTG+AGG 0.610377 1_1:-10740925 Msa0007480:CDS
TCATTACATAGCACACATCA+AGG 0.612605 1_1:-10746995 Msa0007480:five_prime_UTR
GATTTGTTGAAACAGATCGA+CGG 0.612924 1_1:-10741954 Msa0007480:CDS
CTTGCCAGCAGTACAACCAT+AGG 0.613925 1_1:-10746574 Msa0007480:five_prime_UTR
AATTGAGTCGTATCAGTGAG+AGG 0.615704 1_1:-10746541 Msa0007480:five_prime_UTR
ACACATCAAGGATGTGAACA+CGG 0.616559 1_1:-10746983 Msa0007480:five_prime_UTR
TTCGATCAAGACTTGTCCTG+AGG 0.617792 1_1:-10743315 Msa0007480:intron
AGACCAAAACATCCAACACT+AGG 0.618322 1_1:+10740567 None:intergenic
TTGTGAGTCATGTAAAACAA+GGG 0.618657 1_1:-10747926 Msa0007480:five_prime_UTR
GATGATATGGGAATCCTTTG+GGG 0.619435 1_1:-10741845 Msa0007480:intron
CCTGAACTGATTCTCAGACG+TGG 0.622525 1_1:-10743682 Msa0007480:five_prime_UTR
CACATCAAGGATGTGAACAC+GGG 0.624345 1_1:-10746982 Msa0007480:five_prime_UTR
TCCAACACTAGGTATGCCCC+AGG 0.627453 1_1:+10740578 None:intergenic
ATAAAATACAGTATGGTGGA+GGG 0.629754 1_1:-10745567 Msa0007480:intron
AATTCTTGTACGCGGAAAGG+AGG 0.630595 1_1:-10742007 Msa0007480:CDS
CTTCATAAAATACAGTATGG+TGG 0.632041 1_1:-10745571 Msa0007480:intron
GAGAGGGCTCAGACAATCTG+TGG 0.632527 1_1:+10747082 None:intergenic
GTATGGCCAAAATTTCAAGT+GGG 0.632694 1_1:-10740488 Msa0007480:three_prime_UTR
TTATACAATGAGCAGATCAA+CGG 0.633018 1_1:-10749624 Msa0007480:five_prime_UTR
AAGGATACACAGCGTACCGA+GGG 0.636484 1_1:-10740767 Msa0007480:CDS
TCCAAGATTTGTGAGTCCTG+CGG 0.638956 1_1:+10749219 None:intergenic
ATATATCAATTCAGACTGAG+AGG 0.639097 1_1:+10747065 None:intergenic
ATGAGCAGATCAACGGCTCG+GGG 0.642053 1_1:-10749617 Msa0007480:five_prime_UTR
TTCCGCCTCCAAGTGGAACG+CGG 0.644073 1_1:-10749330 Msa0007480:five_prime_UTR
TATGGCCAAAATTTCAAGTG+GGG 0.648080 1_1:-10740487 None:intergenic
ATGGGTGCTACTGAAACCCA+AGG 0.651065 1_1:-10743470 Msa0007480:CDS
CAGTCCTCGTGAGAAAGTGT+TGG 0.651283 1_1:+10745544 None:intergenic
TGTTCCACGAAACCCTCCCT+CGG 0.651998 1_1:+10740751 None:intergenic
GCATTGGTTCCGCCTCCAAG+TGG 0.652496 1_1:-10749337 Msa0007480:five_prime_UTR
TATATCAATTCAGACTGAGA+GGG 0.653215 1_1:+10747066 None:intergenic
GTGGTGCATACTAAGTTCAG+CGG 0.654954 1_1:+10747101 None:intergenic
ATACACAGCGTACCGAGGGA+GGG 0.655824 1_1:-10740763 Msa0007480:CDS
CGTCTGAGAATCAGTTCAGG+AGG 0.656261 1_1:+10743685 None:intergenic
ACGTGGTGCTATATTTCCAA+GGG 0.657770 1_1:-10743665 Msa0007480:five_prime_UTR
AAATAAAAGACCGAGACAAG+GGG 0.661443 1_1:-10749591 Msa0007480:five_prime_UTR
TATGTGCAATCTAGAGAGAG+GGG 0.661724 1_1:+10744004 None:intergenic
CTATGAAGGTGCTCACAATG+TGG 0.664096 1_1:-10748084 Msa0007480:intron
AAAGGATACACAGCGTACCG+AGG 0.665910 1_1:-10740768 Msa0007480:CDS
GTCAGCTGTTCTGATACACA+AGG 0.666311 1_1:-10747037 Msa0007480:five_prime_UTR
ATGGCCAAAATTTCAAGTGG+GGG 0.668491 1_1:-10740486 None:intergenic
ACATCTATCCAATGTTCACA+CGG 0.672493 1_1:-10746213 Msa0007480:five_prime_UTR
GGACAACTAATAGCTGCTGT+TGG 0.674899 1_1:+10744367 None:intergenic
GCAGCTATTAGTTGTCCACA+TGG 0.675814 1_1:-10744361 Msa0007480:five_prime_UTR
CACACCTGAAACATTAAATG+TGG 0.675913 1_1:-10743912 Msa0007480:five_prime_UTR
CTTCTTCTGAAAATGGACAA+CGG 0.680788 1_1:+10746918 None:intergenic
CGAGCCAATTGATCTAACAC+CGG 0.691594 1_1:+10749097 None:intergenic
CATTAAGCTCTTCAACAGTG+AGG 0.699221 1_1:+10747965 None:intergenic
TCTTGGCTTTGATCCAAACA+CGG 0.701473 1_1:-10749266 Msa0007480:five_prime_UTR
TGAAGAGATGGCAATATGTG+AGG 0.706020 1_1:-10743390 Msa0007480:CDS
AGGGCCAACACTTTCTCACG+AGG 0.708277 1_1:-10745548 Msa0007480:five_prime_UTR
ATATGTGTAATTCTTGTACG+CGG 0.741407 1_1:-10742015 Msa0007480:CDS
TCAGGCATAAGTTGTCCATG+TGG 0.742403 1_1:+10744346 None:intergenic
TCAGCTGTTCTGATACACAA+GGG 0.748218 1_1:-10747036 Msa0007480:five_prime_UTR
GGTGCATACTAAGTTCAGCG+GGG 0.797503 1_1:+10747103 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAGAG+TGG - chr1_1:10741110-10741129 Msa0007480:intron 10.0%
!!! TGATTTGTAAAAAAAAAAAA+AGG - chr1_1:10741165-10741184 Msa0007480:intron 10.0%
!! ATAATAATTAAAACATCATT+TGG + chr1_1:10742651-10742670 None:intergenic 10.0%
!!! ATTTTTTTATAATTGGTAAT+GGG - chr1_1:10745061-10745080 Msa0007480:intron 10.0%
!!! TTTTTTTTTTTTTCTTTTCC+AGG - chr1_1:10741439-10741458 Msa0007480:intron 15.0%
!!! TTTTTTTTTTTTCTTTTCCA+GGG - chr1_1:10741440-10741459 Msa0007480:intron 15.0%
!!! TTGTTTTTTAACTTATCAAA+TGG - chr1_1:10741589-10741608 Msa0007480:intron 15.0%
!!! TTTTTGGTTCAATTTTTTTT+TGG - chr1_1:10743366-10743385 Msa0007480:CDS 15.0%
!!! TTTTGGTTCAATTTTTTTTT+GGG - chr1_1:10743367-10743386 Msa0007480:CDS 15.0%
!! TGAATACATATATCATAAAA+TGG + chr1_1:10743916-10743935 None:intergenic 15.0%
!!! ATTTTTCATATTGATTTAGA+AGG + chr1_1:10745031-10745050 None:intergenic 15.0%
!!! GATTTTTTTATAATTGGTAA+TGG - chr1_1:10745060-10745079 Msa0007480:intron 15.0%
!!! TTTTTTTATAATTGGTAATG+GGG - chr1_1:10745062-10745081 Msa0007480:intron 15.0%
!!! TGTTTTTATTTTAAGCTTTA+TGG - chr1_1:10745819-10745838 Msa0007480:intron 15.0%
!!! GTTTTTATTTTAAGCTTTAT+GGG - chr1_1:10745820-10745839 Msa0007480:intron 15.0%
!!! TTTTTATTTTAAGCTTTATG+GGG - chr1_1:10745821-10745840 Msa0007480:intron 15.0%
!! TAAACTTCATATAAATTAAG+AGG + chr1_1:10747959-10747978 None:intergenic 15.0%
!! TCTTAATTTATATGAAGTTT+AGG - chr1_1:10747958-10747977 Msa0007480:five_prime_UTR 15.0%
!! CTTAATTTATATGAAGTTTA+GGG - chr1_1:10747959-10747978 Msa0007480:five_prime_UTR 15.0%
!! AAAAATTAACTGAAATAAGT+TGG + chr1_1:10748867-10748886 None:intergenic 15.0%
!! TATTCTTGAACTAAATTTAT+TGG - chr1_1:10748909-10748928 Msa0007480:five_prime_UTR 15.0%
!!! TTATTTTGTAGTTTAAATGT+TGG - chr1_1:10749303-10749322 Msa0007480:five_prime_UTR 15.0%
!!! TAATTTTTTATTTCCATATC+TGG - chr1_1:10750049-10750068 Msa0007480:intron 15.0%
!!! TAGATATAGCTTGTTTATTT+TGG - chr1_1:10741312-10741331 Msa0007480:intron 20.0%
!! TGTAATTAGATCTAAGTAAT+GGG - chr1_1:10741336-10741355 Msa0007480:intron 20.0%
!! AATGCAATAAGCTAAAAAAA+TGG + chr1_1:10742288-10742307 None:intergenic 20.0%
!! TTGCACAAAAAATAATTCAA+GGG + chr1_1:10742610-10742629 None:intergenic 20.0%
!! TTTGCACAAAAAATAATTCA+AGG + chr1_1:10742611-10742630 None:intergenic 20.0%
!! GATAATATAATTATCCTTAC+TGG - chr1_1:10742727-10742746 Msa0007480:intron 20.0%
!!! CGAAGTTTGAATTTTATTAT+CGG - chr1_1:10743287-10743306 Msa0007480:intron 20.0%
!!! TCATTGTTTACTTCATTTTT+TGG - chr1_1:10743350-10743369 Msa0007480:CDS 20.0%
!!! TTTGGTTCAATTTTTTTTTG+GGG - chr1_1:10743368-10743387 Msa0007480:CDS 20.0%
!!! ATACTCCAGTATATATATTT+TGG - chr1_1:10743429-10743448 Msa0007480:CDS 20.0%
!! TAAGTCCAAAATATATATAC+TGG + chr1_1:10743437-10743456 None:intergenic 20.0%
!!! TCTTTATGTAATTTGATTTG+AGG + chr1_1:10743547-10743566 None:intergenic 20.0%
!! TCACTATAAATCCAAAAATA+CGG + chr1_1:10744638-10744657 None:intergenic 20.0%
!!! TGTTATATTTTATTTGTGTG+TGG - chr1_1:10744743-10744762 Msa0007480:intron 20.0%
!!! GGTTATTTCACTTAATTTAT+GGG - chr1_1:10744824-10744843 Msa0007480:intron 20.0%
!!! GCTTGAGATTTTTTTATAAT+TGG - chr1_1:10745054-10745073 Msa0007480:intron 20.0%
!!! TTTATGCTGTAGTTTTTTTT+TGG - chr1_1:10745318-10745337 Msa0007480:intron 20.0%
!!! TTATGCTGTAGTTTTTTTTT+GGG - chr1_1:10745319-10745338 Msa0007480:intron 20.0%
!!! TATTCCATTTTCTATTATTC+TGG - chr1_1:10745792-10745811 Msa0007480:intron 20.0%
!! ATTTCCAGAATAATAGAAAA+TGG + chr1_1:10745799-10745818 None:intergenic 20.0%
!!! CTAGCTATAAATTTTCTTAT+GGG + chr1_1:10746244-10746263 None:intergenic 20.0%
!!! ACTAGCTATAAATTTTCTTA+TGG + chr1_1:10746245-10746264 None:intergenic 20.0%
!! AAAAATCAGAACAAATAGTT+AGG + chr1_1:10746562-10746581 None:intergenic 20.0%
!!! CAAATTAAATTCTGTTTTCA+TGG - chr1_1:10747009-10747028 Msa0007480:five_prime_UTR 20.0%
!! GATTGAGAAAATTAATGATT+CGG - chr1_1:10747664-10747683 Msa0007480:intron 20.0%
!! TTAGCTTCATATAAATTAAG+AGG + chr1_1:10748078-10748097 None:intergenic 20.0%
!! TCTTAATTTATATGAAGCTA+AGG - chr1_1:10748077-10748096 Msa0007480:five_prime_UTR 20.0%
!! CTTAATTTATATGAAGCTAA+GGG - chr1_1:10748078-10748097 Msa0007480:five_prime_UTR 20.0%
!! TTATAGATTATGGCTTATAA+CGG - chr1_1:10748128-10748147 Msa0007480:intron 20.0%
!! TAGGAAAATTAGAAAAATCA+AGG + chr1_1:10748588-10748607 None:intergenic 20.0%
!!! TTTAGTTCAAGAATATACAA+AGG + chr1_1:10748904-10748923 None:intergenic 20.0%
!! TAAACTTAATTATTCCAATG+AGG - chr1_1:10749059-10749078 Msa0007480:five_prime_UTR 20.0%
!!! AGAATTTTCACAAAATTCAT+TGG + chr1_1:10749498-10749517 None:intergenic 20.0%
!! TTCATGTCATCATATAATAA+AGG - chr1_1:10749680-10749699 Msa0007480:intron 20.0%
!! TCATGTCATCATATAATAAA+GGG - chr1_1:10749681-10749700 Msa0007480:intron 20.0%
!!! TGTAATTTTGCTTAATCTAA+CGG + chr1_1:10749763-10749782 None:intergenic 20.0%
!! TTATTATTCATTGTCCATAT+TGG - chr1_1:10749788-10749807 Msa0007480:intron 20.0%
!! TGTATGTATATATATACTTC+AGG - chr1_1:10750436-10750455 Msa0007480:intron 20.0%
!!! TTATATCCAGATTTTATGTA+TGG - chr1_1:10750594-10750613 Msa0007480:five_prime_UTR 20.0%
!! ATTTGCTGATTGAAATTTCT+AGG - chr1_1:10740705-10740724 Msa0007480:exon 25.0%
!! TTTGCTGATTGAAATTTCTA+GGG - chr1_1:10740706-10740725 Msa0007480:exon 25.0%
!! CATTTACTTGTGTCATTAAA+TGG + chr1_1:10740933-10740952 None:intergenic 25.0%
! CTGTAATTAGATCTAAGTAA+TGG - chr1_1:10741335-10741354 Msa0007480:intron 25.0%
! CAAATGGAATTAGAACTTAT+TGG - chr1_1:10741605-10741624 Msa0007480:intron 25.0%
! TGTAGGAAAATATACAAAAC+AGG - chr1_1:10741639-10741658 Msa0007480:intron 25.0%
! GTTTATTCATATACAAGCAT+TGG + chr1_1:10741932-10741951 None:intergenic 25.0%
! ACAGTTGCATTTAAGTAAAA+AGG - chr1_1:10742034-10742053 Msa0007480:CDS 25.0%
! ATTATAAATCTCTGTCTTTG+TGG - chr1_1:10742305-10742324 Msa0007480:intron 25.0%
! TTATAAATCTCTGTCTTTGT+GGG - chr1_1:10742306-10742325 Msa0007480:intron 25.0%
! TCACATATGATAGAACATTA+TGG - chr1_1:10742365-10742384 Msa0007480:intron 25.0%
! AGTAAACAATGAAAAACACA+AGG + chr1_1:10743342-10743361 None:intergenic 25.0%
! AAAATTAGATATCCTCTTTG+TGG - chr1_1:10743458-10743477 Msa0007480:CDS 25.0%
!! AAAAAAAACTGACAGTTTTC+AGG + chr1_1:10743498-10743517 None:intergenic 25.0%
! ACTGTTCAAATCAAATATCT+TGG - chr1_1:10743587-10743606 Msa0007480:intron 25.0%
!! GAAAGAGAAAGAACTTTTAA+CGG - chr1_1:10743702-10743721 Msa0007480:five_prime_UTR 25.0%
!! AGTTTTGCCAAGTAAAATAA+TGG + chr1_1:10743744-10743763 None:intergenic 25.0%
!!! TTCATTTTATTTGTTTCCTC+TGG - chr1_1:10743932-10743951 Msa0007480:five_prime_UTR 25.0%
! TAAATCTGTTAAGAATGATC+TGG - chr1_1:10744220-10744239 Msa0007480:five_prime_UTR 25.0%
! AAAATTTGGTATGCTTAAGA+TGG + chr1_1:10744367-10744386 None:intergenic 25.0%
!!! ACCAAATTTTTTAGTGAGAA+CGG - chr1_1:10744377-10744396 Msa0007480:five_prime_UTR 25.0%
!!! ATTTTTGGATTTATAGTGAC+TGG - chr1_1:10744639-10744658 Msa0007480:intron 25.0%
!! GGGTTATTTCACTTAATTTA+TGG - chr1_1:10744823-10744842 Msa0007480:intron 25.0%
!!! ATGATTCCATTTTTTGATCT+TGG - chr1_1:10745001-10745020 Msa0007480:intron 25.0%
!! TTCTATTCTAAGTATTGTGA+TGG - chr1_1:10745126-10745145 Msa0007480:intron 25.0%
! CTCACTCTGATAAAAAAAAA+AGG + chr1_1:10745174-10745193 None:intergenic 25.0%
!!! CTTTTTTTTTTATCAGAGTG+AGG - chr1_1:10745172-10745191 Msa0007480:intron 25.0%
! ATTAGCAACAATGACATTAT+AGG + chr1_1:10745480-10745499 None:intergenic 25.0%
! ATGCTTCATAAAATACAGTA+TGG - chr1_1:10745525-10745544 Msa0007480:five_prime_UTR 25.0%
! AAAGCTAATAACAAAACAGA+AGG - chr1_1:10745918-10745937 Msa0007480:intron 25.0%
! AAGCTAATAACAAAACAGAA+GGG - chr1_1:10745919-10745938 Msa0007480:intron 25.0%
! AAAATTGCGTTGTATTATTG+TGG - chr1_1:10746037-10746056 Msa0007480:intron 25.0%
! CTATACTAAACTAAACTAAC+TGG - chr1_1:10746148-10746167 Msa0007480:five_prime_UTR 25.0%
!! CTATAAATTTTCTTATGGGT+GGG + chr1_1:10746240-10746259 None:intergenic 25.0%
! AAGAAAATTTATAGCTAGTG+AGG - chr1_1:10746246-10746265 Msa0007480:intron 25.0%
! AGAAAATTTATAGCTAGTGA+GGG - chr1_1:10746247-10746266 Msa0007480:intron 25.0%
! ATGATACCATATTAGGTATT+GGG + chr1_1:10746360-10746379 None:intergenic 25.0%
! AATGATACCATATTAGGTAT+TGG + chr1_1:10746361-10746380 None:intergenic 25.0%
! ATAGGAAATGATACCATATT+AGG + chr1_1:10746367-10746386 None:intergenic 25.0%
! ATTTCCTATCCTAAATCTAT+TGG - chr1_1:10746378-10746397 Msa0007480:intron 25.0%
! TTTCCTATCCTAAATCTATT+GGG - chr1_1:10746379-10746398 Msa0007480:intron 25.0%
!!! AAATAGTTAGGTTTTGGAAT+GGG + chr1_1:10746550-10746569 None:intergenic 25.0%
! AAAAGTAAACTCAGATCAAA+AGG + chr1_1:10746650-10746669 None:intergenic 25.0%
! TCAAGCATAGAAAAATGAAA+TGG + chr1_1:10747294-10747313 None:intergenic 25.0%
! ATGATATTCAAAATGACGAA+GGG + chr1_1:10747490-10747509 None:intergenic 25.0%
! AATGATATTCAAAATGACGA+AGG + chr1_1:10747491-10747510 None:intergenic 25.0%
!! ATTCTAATTTCTGAAAGACT+TGG + chr1_1:10747893-10747912 None:intergenic 25.0%
! ATTAGACAACTAATCCTTTA+TGG - chr1_1:10747928-10747947 Msa0007480:five_prime_UTR 25.0%
! ATTAAGAGGAAATACCATAA+AGG + chr1_1:10747945-10747964 None:intergenic 25.0%
! ATTAGACAACTAATCCTTTA+TGG - chr1_1:10747928-10747947 Msa0007480:five_prime_UTR 25.0%
!! ATAAGCTAGCTTATAGATTA+TGG - chr1_1:10748118-10748137 Msa0007480:intron 25.0%
! ATCTTTAGCATTACTCATAA+CGG - chr1_1:10748330-10748349 Msa0007480:intron 25.0%
! ATGTGATGAAAATAGGAAAT+AGG + chr1_1:10748607-10748626 None:intergenic 25.0%
!!! TAACTGAAATAAGTTGGTAA+TGG + chr1_1:10748861-10748880 None:intergenic 25.0%
! AATTACACATATATCCTCAT+TGG + chr1_1:10749076-10749095 None:intergenic 25.0%
! ATATCAATACAGAACAAACT+TGG + chr1_1:10749284-10749303 None:intergenic 25.0%
! CTAACTTTATGTGGTTAAAA+TGG - chr1_1:10749330-10749349 Msa0007480:five_prime_UTR 25.0%
! ACTTGTAGTAGACATAAATT+AGG - chr1_1:10749918-10749937 Msa0007480:intron 25.0%
! CTTGTAGTAGACATAAATTA+GGG - chr1_1:10749919-10749938 Msa0007480:intron 25.0%
! GAAAATCAGATACTACAAAA+AGG - chr1_1:10750092-10750111 Msa0007480:intron 25.0%
! AACAATTGAATGAGAAGAAA+TGG - chr1_1:10750466-10750485 Msa0007480:intron 25.0%
! ATTTTCACAAGTTCACTCTA+TGG + chr1_1:10740821-10740840 None:intergenic 30.0%
AGGTATATCAAGTTCATACA+TGG - chr1_1:10741185-10741204 Msa0007480:intron 30.0%
TTATACAATGAGCAGATCAA+CGG - chr1_1:10741475-10741494 Msa0007480:intron 30.0%
AAAAATAAAAGACCGAGACA+AGG - chr1_1:10741506-10741525 Msa0007480:intron 30.0%
AAAATAAAAGACCGAGACAA+GGG - chr1_1:10741507-10741526 Msa0007480:intron 30.0%
TATTGGTACTTTCTTTGTGT+AGG - chr1_1:10741622-10741641 Msa0007480:intron 30.0%
!!! TCTGATTTTGTTGATAGTCT+TGG - chr1_1:10741816-10741835 Msa0007480:intron 30.0%
!! ATGAATAAACGTTTTCGAGA+AGG - chr1_1:10741942-10741961 Msa0007480:CDS 30.0%
!! AGATATTTTTCAGCAACAAC+CGG - chr1_1:10741983-10742002 Msa0007480:CDS 30.0%
TTCTCCATTTGTAAAAACGT+TGG - chr1_1:10742070-10742089 Msa0007480:CDS 30.0%
! AACTCCAACGTTTTTACAAA+TGG + chr1_1:10742077-10742096 None:intergenic 30.0%
ATTTGTAAAAACGTTGGAGT+TGG - chr1_1:10742076-10742095 Msa0007480:CDS 30.0%
TATAAATCTCTGTCTTTGTG+GGG - chr1_1:10742307-10742326 Msa0007480:intron 30.0%
! TTTTGTGCTGAATTAACGTT+TGG - chr1_1:10742670-10742689 Msa0007480:intron 30.0%
AACACAAACACTTCAAGAAA+AGG + chr1_1:10742929-10742948 None:intergenic 30.0%
! TTGAAGTGTTTGTGTTTCAT+TGG - chr1_1:10742933-10742952 Msa0007480:intron 30.0%
! ATTTTCCCACTTTACTATGA+AGG - chr1_1:10743001-10743020 Msa0007480:intron 30.0%
TTTGTGAGTCATGTAAAACA+AGG - chr1_1:10743172-10743191 Msa0007480:intron 30.0%
TTGTGAGTCATGTAAAACAA+GGG - chr1_1:10743173-10743192 Msa0007480:intron 30.0%
TTTAACGGTTATACAGAAGA+AGG - chr1_1:10743717-10743736 Msa0007480:intron 30.0%
!! AGAAGGACCATTATTTTACT+TGG - chr1_1:10743734-10743753 Msa0007480:intron 30.0%
! TTTTACTTGGCAAAACTGTT+TGG - chr1_1:10743747-10743766 Msa0007480:intron 30.0%
!! CAAAACTGTTTGGTGTATTA+TGG - chr1_1:10743757-10743776 Msa0007480:intron 30.0%
TTGGTGTATTATGGCTAATT+TGG - chr1_1:10743766-10743785 Msa0007480:intron 30.0%
!!! TACATGCTTTTTCTTTCTCT+GGG - chr1_1:10743844-10743863 Msa0007480:intron 30.0%
TATATCAATTCAGACTGAGA+GGG + chr1_1:10744036-10744055 None:intergenic 30.0%
ATATATCAATTCAGACTGAG+AGG + chr1_1:10744037-10744056 None:intergenic 30.0%
!! ATTCTAATTTCTCTGAAGCA+AGG - chr1_1:10744246-10744265 Msa0007480:five_prime_UTR 30.0%
!! TTCTAATTTCTCTGAAGCAA+GGG - chr1_1:10744247-10744266 Msa0007480:five_prime_UTR 30.0%
!!! CCAAATTTTTTAGTGAGAAC+GGG - chr1_1:10744378-10744397 Msa0007480:five_prime_UTR 30.0%
!!! CAAATTTTTTAGTGAGAACG+GGG - chr1_1:10744379-10744398 Msa0007480:five_prime_UTR 30.0%
!!! AAATTTTTTAGTGAGAACGG+GGG - chr1_1:10744380-10744399 Msa0007480:five_prime_UTR 30.0%
TCATTATCTTGTGCAGTAAT+TGG + chr1_1:10744446-10744465 None:intergenic 30.0%
ATCTCTTCACAAAAATGAGA+AGG + chr1_1:10744476-10744495 None:intergenic 30.0%
GCATATGCTTTATGTATTCT+TGG - chr1_1:10744700-10744719 Msa0007480:intron 30.0%
! ATTCCTTGTATCATTTGCTA+GGG - chr1_1:10744798-10744817 Msa0007480:intron 30.0%
!! AGTATTGTGATGGATAATAG+TGG - chr1_1:10745136-10745155 Msa0007480:intron 30.0%
!! CTGTATTTTATGAAGCATCA+AGG + chr1_1:10745523-10745542 None:intergenic 30.0%
CTTCATAAAATACAGTATGG+TGG - chr1_1:10745528-10745547 Msa0007480:five_prime_UTR 30.0%
! ATAAAATACAGTATGGTGGA+GGG - chr1_1:10745532-10745551 Msa0007480:five_prime_UTR 30.0%
AATCATTTAAGCAACTTGCA+CGG - chr1_1:10745646-10745665 Msa0007480:intron 30.0%
TGTTTCTTCAGAAAGGAATA+AGG - chr1_1:10745754-10745773 Msa0007480:intron 30.0%
GTTTCTTCAGAAAGGAATAA+GGG - chr1_1:10745755-10745774 Msa0007480:intron 30.0%
TTTCTTCAGAAAGGAATAAG+GGG - chr1_1:10745756-10745775 Msa0007480:intron 30.0%
TCTCAGATCATACATAATAC+TGG + chr1_1:10745847-10745866 None:intergenic 30.0%
! GTATAAGCATTGTCTTGTAT+TGG + chr1_1:10745973-10745992 None:intergenic 30.0%
TACAAGACAATGCTTATACT+AGG - chr1_1:10745974-10745993 Msa0007480:intron 30.0%
! TGATAGTGTGTTTGTTTAGT+TGG + chr1_1:10746177-10746196 None:intergenic 30.0%
! GCTATAAATTTTCTTATGGG+TGG + chr1_1:10746241-10746260 None:intergenic 30.0%
GAAAATTTATAGCTAGTGAG+GGG - chr1_1:10746248-10746267 Msa0007480:intron 30.0%
! TGATACCATATTAGGTATTG+GGG + chr1_1:10746359-10746378 None:intergenic 30.0%
!!! AGCTAAATAGTGGTTTTAAG+TGG - chr1_1:10746479-10746498 Msa0007480:five_prime_UTR 30.0%
!!! TAAATAGTGGTTTTAAGTGG+TGG - chr1_1:10746482-10746501 Msa0007480:five_prime_UTR 30.0%
!!! AAATAGTGGTTTTAAGTGGT+GGG - chr1_1:10746483-10746502 Msa0007480:five_prime_UTR 30.0%
!!! CTTAGAAGTTAGTTTTGCAA+GGG - chr1_1:10746515-10746534 Msa0007480:five_prime_UTR 30.0%
!!! CAAATAGTTAGGTTTTGGAA+TGG + chr1_1:10746551-10746570 None:intergenic 30.0%
! CAGAACAAATAGTTAGGTTT+TGG + chr1_1:10746556-10746575 None:intergenic 30.0%
!! TGATCTGAGTTTACTTTTGT+AGG - chr1_1:10746652-10746671 Msa0007480:five_prime_UTR 30.0%
!! AAGATCATTTTTCACAGAAG+TGG + chr1_1:10746844-10746863 None:intergenic 30.0%
TTCTGTGAAAAATGATCTTC+TGG - chr1_1:10746845-10746864 Msa0007480:five_prime_UTR 30.0%
TGGAGTCTAAATGAAATGTA+GGG + chr1_1:10746875-10746894 None:intergenic 30.0%
TTGGAGTCTAAATGAAATGT+AGG + chr1_1:10746876-10746895 None:intergenic 30.0%
!! ATTATCTGAAGTGTTTTGCA+TGG - chr1_1:10746920-10746939 Msa0007480:five_prime_UTR 30.0%
! AAATTCTGTTTTCATGGTGT+AGG - chr1_1:10747015-10747034 Msa0007480:five_prime_UTR 30.0%
GGTGTAGGTTATTAAAACAA+AGG - chr1_1:10747030-10747049 Msa0007480:five_prime_UTR 30.0%
ATCACCACATTTAATGTTTC+AGG + chr1_1:10747194-10747213 None:intergenic 30.0%
GAAACATTAAATGTGGTGAT+TGG - chr1_1:10747194-10747213 Msa0007480:intron 30.0%
GATCTAAATCTGCAACTAAA+TGG + chr1_1:10747255-10747274 None:intergenic 30.0%
ATAAGGGGAATAATGAAAGT+GGG - chr1_1:10747750-10747769 Msa0007480:intron 30.0%
ATTAAGAGGAAATGCCATAA+AGG + chr1_1:10748064-10748083 None:intergenic 30.0%
GCTATAAGCACATAATGAAA+AGG + chr1_1:10748395-10748414 None:intergenic 30.0%
TGTTAGCTGATAGCTTATAA+CGG + chr1_1:10748479-10748498 None:intergenic 30.0%
CTCTGTTTGGTAAAAAATAG+CGG + chr1_1:10748519-10748538 None:intergenic 30.0%
GAAGATAAGCATGAACATTT+AGG + chr1_1:10748542-10748561 None:intergenic 30.0%
ACTATGCATGTGATGAAAAT+AGG + chr1_1:10748614-10748633 None:intergenic 30.0%
!! GTTGGTAATGGAATTTATGT+GGG + chr1_1:10748849-10748868 None:intergenic 30.0%
!! AGTTGGTAATGGAATTTATG+TGG + chr1_1:10748850-10748869 None:intergenic 30.0%
GCAAGTTGTATTCTCTTTAT+AGG - chr1_1:10748931-10748950 Msa0007480:five_prime_UTR 30.0%
ATATGTGTAATTCTTGTACG+CGG - chr1_1:10749084-10749103 Msa0007480:five_prime_UTR 30.0%
TTTGTAGTTTAAATGTTGGC+TGG - chr1_1:10749307-10749326 Msa0007480:five_prime_UTR 30.0%
TTTATGTGGTTAAAATGGTG+TGG - chr1_1:10749335-10749354 Msa0007480:five_prime_UTR 30.0%
!! ATGCTTGTTGATTCTTGAAT+GGG - chr1_1:10749438-10749457 Msa0007480:five_prime_UTR 30.0%
! TCACAAAATTCATTGGTTGT+TGG + chr1_1:10749491-10749510 None:intergenic 30.0%
GCACATACAATATTGCTAAA+TGG - chr1_1:10749545-10749564 Msa0007480:intron 30.0%
TTGCTAAATGGAGCTTATAT+TGG - chr1_1:10749557-10749576 Msa0007480:intron 30.0%
TAAATGGAGCTTATATTGGT+AGG - chr1_1:10749561-10749580 Msa0007480:five_prime_UTR 30.0%
!! TGGTAGGTTATTGTTACTTT+AGG - chr1_1:10749577-10749596 Msa0007480:five_prime_UTR 30.0%
!! GGTAGGTTATTGTTACTTTA+GGG - chr1_1:10749578-10749597 Msa0007480:five_prime_UTR 30.0%
CTTATAGATTTAGCAATCAG+GGG + chr1_1:10749626-10749645 None:intergenic 30.0%
CCTTATAGATTTAGCAATCA+GGG + chr1_1:10749627-10749646 None:intergenic 30.0%
TCTATAAGGCTCTTAAACAT+AGG - chr1_1:10749638-10749657 Msa0007480:five_prime_UTR 30.0%
ATTATATGATGACATGAAGC+TGG + chr1_1:10749678-10749697 None:intergenic 30.0%
TATAATAAAGGGCAGATTGT+AGG - chr1_1:10749692-10749711 Msa0007480:intron 30.0%
ATAATAAAGGGCAGATTGTA+GGG - chr1_1:10749693-10749712 Msa0007480:intron 30.0%
!!! AATCTAACGGTTTTAGAATG+TGG + chr1_1:10749750-10749769 None:intergenic 30.0%
TGATAAACTGAAAATAGACG+TGG - chr1_1:10749948-10749967 Msa0007480:intron 30.0%
TGTTCATTTCTGTTCATAAG+AGG + chr1_1:10750275-10750294 None:intergenic 30.0%
AGATGATACCAATGAAAAAG+TGG + chr1_1:10750413-10750432 None:intergenic 30.0%
TTGAATGAGAAGAAATGGTT+TGG - chr1_1:10750471-10750490 Msa0007480:intron 30.0%
TCCAAAATTTGCCATTACTA+GGG + chr1_1:10750563-10750582 None:intergenic 30.0%
TTCCAAAATTTGCCATTACT+AGG + chr1_1:10750564-10750583 None:intergenic 30.0%
! TTTTGGCCATACATAAAATC+TGG + chr1_1:10750603-10750622 None:intergenic 30.0%
! AGTTTAGGCCCTATATTTTG+AGG - chr1_1:10741042-10741061 Msa0007480:intron 35.0%
!! GTTTAGGCCCTATATTTTGA+GGG - chr1_1:10741043-10741062 Msa0007480:intron 35.0%
!! TTTAGGCCCTATATTTTGAG+GGG - chr1_1:10741044-10741063 Msa0007480:intron 35.0%
!! TTAGATCTAAGTAATGGGTG+TGG - chr1_1:10741341-10741360 Msa0007480:intron 35.0%
AAATAAAAGACCGAGACAAG+GGG - chr1_1:10741508-10741527 Msa0007480:intron 35.0%
!! CCTCAATATTTCTGAAGTTC+CGG + chr1_1:10741543-10741562 None:intergenic 35.0%
! CAGAAATATTGAGGTACTAC+AGG - chr1_1:10741549-10741568 Msa0007480:intron 35.0%
GGTTGTTGCTGAAAAATATC+TGG + chr1_1:10741984-10742003 None:intergenic 35.0%
!!! TGGAAATTTTGGAACGACTA+AGG + chr1_1:10742166-10742185 None:intergenic 35.0%
TAGTCGTTCCAAAATTTCCA+AGG - chr1_1:10742166-10742185 Msa0007480:intron 35.0%
! CGATAGTTCAAGATCTTTTC+CGG - chr1_1:10742195-10742214 Msa0007480:intron 35.0%
! GATAGTTCAAGATCTTTTCC+GGG - chr1_1:10742196-10742215 Msa0007480:intron 35.0%
! ATAGTTCAAGATCTTTTCCG+GGG - chr1_1:10742197-10742216 Msa0007480:intron 35.0%
GTGACAACGTAAGAAATCAT+TGG - chr1_1:10742233-10742252 Msa0007480:intron 35.0%
TACTTGAGTATGTAGTGAAG+AGG + chr1_1:10742499-10742518 None:intergenic 35.0%
TAAGATACACCTCTGTTTGT+TGG - chr1_1:10742581-10742600 Msa0007480:intron 35.0%
AAGATACACCTCTGTTTGTT+GGG - chr1_1:10742582-10742601 Msa0007480:intron 35.0%
! GATCAAAAGTTAAGAAGCAC+AGG - chr1_1:10742776-10742795 Msa0007480:intron 35.0%
! CTCATAGAAGTCTTCCATTT+TGG + chr1_1:10743061-10743080 None:intergenic 35.0%
AATGGAAGACTTCTATGAGT+TGG - chr1_1:10743062-10743081 Msa0007480:intron 35.0%
AGCTGAAAATTAAGCACATC+AGG + chr1_1:10743234-10743253 None:intergenic 35.0%
CAAACTTCGTACAATACCTT+TGG + chr1_1:10743276-10743295 None:intergenic 35.0%
!!! CTACATGCTTTTTCTTTCTC+TGG - chr1_1:10743843-10743862 Msa0007480:intron 35.0%
TCATTACATAGCACACATCA+AGG - chr1_1:10744104-10744123 Msa0007480:intron 35.0%
!! TGATGAGCTTGTTACTAACT+TGG - chr1_1:10744157-10744176 Msa0007480:intron 35.0%
!! GATGAGCTTGTTACTAACTT+GGG - chr1_1:10744158-10744177 Msa0007480:intron 35.0%
! CTTCTTCTGAAAATGGACAA+CGG + chr1_1:10744184-10744203 None:intergenic 35.0%
! CATGAAGCTTCTTCTGAAAA+TGG + chr1_1:10744191-10744210 None:intergenic 35.0%
AGTTTCACAATCTTTACCCA+TGG - chr1_1:10744304-10744323 Msa0007480:five_prime_UTR 35.0%
CTAGATGAAAATGTCTCCAT+GGG + chr1_1:10744323-10744342 None:intergenic 35.0%
ACTAGATGAAAATGTCTCCA+TGG + chr1_1:10744324-10744343 None:intergenic 35.0%
CCCGTTCTCACTAAAAAATT+TGG + chr1_1:10744381-10744400 None:intergenic 35.0%
TCAATTCTACCTCTTTCCTA+TGG + chr1_1:10744544-10744563 None:intergenic 35.0%
TAAAGCATATGCACTAACCT+TGG + chr1_1:10744692-10744711 None:intergenic 35.0%
ACAAACTATTGATGTGCTCT+TGG + chr1_1:10744726-10744745 None:intergenic 35.0%
CATTCCTTGTATCATTTGCT+AGG - chr1_1:10744797-10744816 Msa0007480:intron 35.0%
! TTGTATCATTTGCTAGGGTA+GGG - chr1_1:10744803-10744822 Msa0007480:intron 35.0%
ACATCTATCCAATGTTCACA+CGG - chr1_1:10744886-10744905 Msa0007480:intron 35.0%
ATGGGATAAGTTACTGTCTA+AGG - chr1_1:10744960-10744979 Msa0007480:intron 35.0%
ACGAATATTCTTTGTAACGC+AGG + chr1_1:10745262-10745281 None:intergenic 35.0%
CATAAAATACAGTATGGTGG+AGG - chr1_1:10745531-10745550 Msa0007480:five_prime_UTR 35.0%
ATCATTTAAGCAACTTGCAC+GGG - chr1_1:10745647-10745666 Msa0007480:intron 35.0%
CTTGATGGAAAAAACGTAGA+TGG - chr1_1:10745675-10745694 Msa0007480:intron 35.0%
! TCGTTTCTGTTTCTTCAGAA+AGG - chr1_1:10745747-10745766 Msa0007480:intron 35.0%
TATGTATGATCTGAGAGAGA+AGG - chr1_1:10745851-10745870 Msa0007480:intron 35.0%
AATACACATCGATGCTTAAC+AGG - chr1_1:10745943-10745962 Msa0007480:intron 35.0%
CTAGGAAAGAGCTAGAAAAT+TGG - chr1_1:10745992-10746011 Msa0007480:intron 35.0%
AGCTAGAAAATTGGATAGCA+TGG - chr1_1:10746001-10746020 Msa0007480:intron 35.0%
GCTAGAAAATTGGATAGCAT+GGG - chr1_1:10746002-10746021 Msa0007480:intron 35.0%
AAATAGAACCAGTTGACTGT+TGG + chr1_1:10746085-10746104 None:intergenic 35.0%
!! ACAGTCAACTGGTTCTATTT+CGG - chr1_1:10746085-10746104 Msa0007480:intron 35.0%
GCTTACATTGGATAGTGATA+TGG - chr1_1:10746270-10746289 Msa0007480:intron 35.0%
CATCTCTCATCTTACAAGTT+AGG - chr1_1:10746309-10746328 Msa0007480:intron 35.0%
ATCTTACAAGTTAGGCTTGT+GGG - chr1_1:10746317-10746336 Msa0007480:intron 35.0%
TCAACACACTTCTTACACTT+AGG + chr1_1:10746434-10746453 None:intergenic 35.0%
TAGTGACATGAGCTAAATAG+TGG - chr1_1:10746469-10746488 Msa0007480:five_prime_UTR 35.0%
!! CAAAACTAACTTCTAAGGTG+AGG + chr1_1:10746512-10746531 None:intergenic 35.0%
CCTTGCAAAACTAACTTCTA+AGG + chr1_1:10746517-10746536 None:intergenic 35.0%
!!! CCTTAGAAGTTAGTTTTGCA+AGG - chr1_1:10746514-10746533 Msa0007480:five_prime_UTR 35.0%
ATCTACTTCACCAAGTTGTT+AGG - chr1_1:10746598-10746617 Msa0007480:five_prime_UTR 35.0%
TCTACTTCACCAAGTTGTTA+GGG - chr1_1:10746599-10746618 Msa0007480:five_prime_UTR 35.0%
TTTGAACAACCCTAACAACT+TGG + chr1_1:10746611-10746630 None:intergenic 35.0%
AGTCATGAGAAGTTGTTCAA+TGG - chr1_1:10747062-10747081 Msa0007480:five_prime_UTR 35.0%
GTCATGAGAAGTTGTTCAAT+GGG - chr1_1:10747063-10747082 Msa0007480:five_prime_UTR 35.0%
ATATGTGCAATCTAGAGAGA+GGG + chr1_1:10747099-10747118 None:intergenic 35.0%
AATATGTGCAATCTAGAGAG+AGG + chr1_1:10747100-10747119 None:intergenic 35.0%
ATTTCTTAGTTCCTTCCTCT+TGG - chr1_1:10747117-10747136 Msa0007480:five_prime_UTR 35.0%
!!! CATTTTGAAATCCAAGAGGA+AGG + chr1_1:10747131-10747150 None:intergenic 35.0%
CTTCCTCTTGGATTTCAAAA+TGG - chr1_1:10747129-10747148 Msa0007480:five_prime_UTR 35.0%
!!! TCTCCATTTTGAAATCCAAG+AGG + chr1_1:10747135-10747154 None:intergenic 35.0%
CACACCTGAAACATTAAATG+TGG - chr1_1:10747187-10747206 Msa0007480:intron 35.0%
AACCTGTAGCAATTTCAGAA+TGG - chr1_1:10747344-10747363 Msa0007480:intron 35.0%
!! ATCCATTCTGAAATTGCTAC+AGG + chr1_1:10747349-10747368 None:intergenic 35.0%
CCAATCATTCTCAGATATGA+TGG + chr1_1:10747592-10747611 None:intergenic 35.0%
CCATCATATCTGAGAATGAT+TGG - chr1_1:10747589-10747608 Msa0007480:intron 35.0%
! GAAATGTTTCTGCGAAGAAT+GGG - chr1_1:10747611-10747630 Msa0007480:intron 35.0%
AATCTTTGCAGATACTCCTT+GGG + chr1_1:10747648-10747667 None:intergenic 35.0%
GATAAGGGGAATAATGAAAG+TGG - chr1_1:10747749-10747768 Msa0007480:intron 35.0%
!!! GTAGAGTTTTAGATTACCTC+AGG + chr1_1:10747803-10747822 None:intergenic 35.0%
AAACTCTACCAACATTCTGT+TGG - chr1_1:10747814-10747833 Msa0007480:intron 35.0%
TAGCATATCCAACAGAATGT+TGG + chr1_1:10747825-10747844 None:intergenic 35.0%
GCACAAGAAAATCAAGATCA+GGG + chr1_1:10747855-10747874 None:intergenic 35.0%
GACTTGGCTTCAAAAAACTT+AGG + chr1_1:10747877-10747896 None:intergenic 35.0%
! TATGAAGTTTAGGGTCTGTT+TGG - chr1_1:10747968-10747987 Msa0007480:five_prime_UTR 35.0%
! AGATTATGGCTTATAACGGA+TGG - chr1_1:10748132-10748151 Msa0007480:intron 35.0%
!! GATTATGGCTTATAACGGAT+GGG - chr1_1:10748133-10748152 Msa0007480:intron 35.0%
CTGATGTGCTAAATAGAGAT+AGG - chr1_1:10748201-10748220 Msa0007480:intron 35.0%
TAGGTTATAACTTCCGAAAC+TGG - chr1_1:10748220-10748239 Msa0007480:intron 35.0%
GAAAAGGTTGTTACCAAACA+GGG + chr1_1:10748379-10748398 None:intergenic 35.0%
TGAAAAGGTTGTTACCAAAC+AGG + chr1_1:10748380-10748399 None:intergenic 35.0%
ATGAACATTTAGGCTCTGTT+TGG + chr1_1:10748532-10748551 None:intergenic 35.0%
TATAGCTTCTCAAGTACAAC+TGG + chr1_1:10748564-10748583 None:intergenic 35.0%
TGTCTTAAAAAAGCTGCTTC+CGG - chr1_1:10748695-10748714 Msa0007480:intron 35.0%
ATTTATGTGGGTGAACAGAA+GGG + chr1_1:10748837-10748856 None:intergenic 35.0%
AATTTATGTGGGTGAACAGA+AGG + chr1_1:10748838-10748857 None:intergenic 35.0%
TGAAAGTTGCATTGGAGAAA+AGG - chr1_1:10749017-10749036 Msa0007480:five_prime_UTR 35.0%
!! GATTTGTTGAAACAGATCGA+CGG - chr1_1:10749145-10749164 Msa0007480:five_prime_UTR 35.0%
! ATTTGTTGAAACAGATCGAC+GGG - chr1_1:10749146-10749165 Msa0007480:five_prime_UTR 35.0%
GCTCCAGGAAGATTAAAAAT+GGG - chr1_1:10749178-10749197 Msa0007480:five_prime_UTR 35.0%
!! ACTCCCATTTTTAATCTTCC+TGG + chr1_1:10749184-10749203 None:intergenic 35.0%
ACCAGCTGAAAATGATGATA+TGG - chr1_1:10749241-10749260 Msa0007480:five_prime_UTR 35.0%
CCAGCTGAAAATGATGATAT+GGG - chr1_1:10749242-10749261 Msa0007480:five_prime_UTR 35.0%
ATGATGATATGGGAATCCTT+TGG - chr1_1:10749252-10749271 Msa0007480:five_prime_UTR 35.0%
TGATGATATGGGAATCCTTT+GGG - chr1_1:10749253-10749272 Msa0007480:five_prime_UTR 35.0%
TGCAAATTGCAACACATCAT+TGG + chr1_1:10749419-10749438 None:intergenic 35.0%
!! CATGCTTGTTGATTCTTGAA+TGG - chr1_1:10749437-10749456 Msa0007480:five_prime_UTR 35.0%
TTGATTCTTGAATGGGAGAA+TGG - chr1_1:10749445-10749464 Msa0007480:five_prime_UTR 35.0%
TGGATTGTATAAAGCAGTAG+AGG + chr1_1:10749471-10749490 None:intergenic 35.0%
CCCTGATTGCTAAATCTATA+AGG - chr1_1:10749624-10749643 Msa0007480:five_prime_UTR 35.0%
GCCTTATAGATTTAGCAATC+AGG + chr1_1:10749628-10749647 None:intergenic 35.0%
ACAGAGACTACGTATAAAAG+TGG + chr1_1:10749723-10749742 None:intergenic 35.0%
! CTTTTATACGTAGTCTCTGT+TGG - chr1_1:10749723-10749742 Msa0007480:intron 35.0%
ATGCAATCACACAATACAGA+GGG + chr1_1:10749867-10749886 None:intergenic 35.0%
TGTCTACTACAAGTCAGTTT+AGG + chr1_1:10749912-10749931 None:intergenic 35.0%
TGTCATTGCTGCAATCAATT+CGG - chr1_1:10750015-10750034 Msa0007480:intron 35.0%
TGACGAAAATACTACACTTG+TGG - chr1_1:10750136-10750155 Msa0007480:intron 35.0%
TGGAGATCAGATTATTGTGA+GGG - chr1_1:10750175-10750194 Msa0007480:intron 35.0%
! CAGCAATATCTCGATTTTCA+TGG + chr1_1:10750211-10750230 None:intergenic 35.0%
CATGAAAATCGAGATATTGC+TGG - chr1_1:10750209-10750228 Msa0007480:intron 35.0%
GACTTCAAATGTTTCATCTC+AGG - chr1_1:10750376-10750395 Msa0007480:intron 35.0%
!!! TGTAGGAACCACTTTTTCAT+TGG - chr1_1:10750402-10750421 Msa0007480:intron 35.0%
! AATGAGAAGAAATGGTTTGG+TGG - chr1_1:10750474-10750493 Msa0007480:intron 35.0%
!! ATACCTAGTGTTGGATGTTT+TGG - chr1_1:10750529-10750548 Msa0007480:intron 35.0%
TGTATGGCCAAAATTTCAAG+TGG - chr1_1:10750610-10750629 Msa0007480:five_prime_UTR 35.0%
GACGAACGAATGAATGAGTT+TGG + chr1_1:10740491-10740510 None:intergenic 40.0%
! TCGTCTTCTATCAGAAGTGT+CGG + chr1_1:10740990-10741009 None:intergenic 40.0%
! TGTTGGCATTGAGCAAGTTT+AGG - chr1_1:10741027-10741046 Msa0007480:intron 40.0%
TTCGTGCCCCTCAAAATATA+GGG + chr1_1:10741053-10741072 None:intergenic 40.0%
TACATGGCACTCAAAATCTC+AGG - chr1_1:10741201-10741220 Msa0007480:intron 40.0%
ACATGGCACTCAAAATCTCA+GGG - chr1_1:10741202-10741221 Msa0007480:intron 40.0%
!! CTAAGTAATGGGTGTGGAAA+TGG - chr1_1:10741347-10741366 Msa0007480:intron 40.0%
TATAATACAAGACTCAGCCC+TGG + chr1_1:10741460-10741479 None:intergenic 40.0%
CCGGAACTTCAGAAATATTG+AGG - chr1_1:10741540-10741559 Msa0007480:intron 40.0%
ATTACAAAGCCAGTCTGTTC+AGG - chr1_1:10741699-10741718 Msa0007480:intron 40.0%
ACCAATGCACAGAAGCAATT+CGG + chr1_1:10741750-10741769 None:intergenic 40.0%
!! TCTTGGCTTTGATCCAAACA+CGG - chr1_1:10741833-10741852 Msa0007480:intron 40.0%
! ACAACCGGTGTTAGATCAAT+TGG - chr1_1:10741998-10742017 Msa0007480:CDS 40.0%
! CGTTCTTGCCTTGGAAATTT+TGG + chr1_1:10742177-10742196 None:intergenic 40.0%
TTGAACTATCGTTCTTGCCT+TGG + chr1_1:10742186-10742205 None:intergenic 40.0%
! AAGCCTTATCACACTAAGTG+GGG + chr1_1:10742414-10742433 None:intergenic 40.0%
! CAAGCCTTATCACACTAAGT+GGG + chr1_1:10742415-10742434 None:intergenic 40.0%
GTAGTGAAGAGGCAGTAAAA+GGG + chr1_1:10742488-10742507 None:intergenic 40.0%
TGTAGTGAAGAGGCAGTAAA+AGG + chr1_1:10742489-10742508 None:intergenic 40.0%
GTCGTTTGCATCATCTTTGA+GGG - chr1_1:10742692-10742711 Msa0007480:intron 40.0%
ATGAGTCTGAACAACCAGTA+AGG + chr1_1:10742744-10742763 None:intergenic 40.0%
ACGTAGTGGCTCAACAATAT+TGG - chr1_1:10742821-10742840 Msa0007480:intron 40.0%
AAGGGACACTACAAGATAGA+TGG + chr1_1:10742853-10742872 None:intergenic 40.0%
GTTGGACATGGAAAACATGT+CGG + chr1_1:10742900-10742919 None:intergenic 40.0%
! TGTTTTCCATGTCCAACACA+CGG - chr1_1:10742903-10742922 Msa0007480:intron 40.0%
! TCATTGGTCAGAATTGACTC+TGG - chr1_1:10742949-10742968 Msa0007480:intron 40.0%
GAGCACCTTCATAGTAAAGT+GGG + chr1_1:10743009-10743028 None:intergenic 40.0%
TGAGCACCTTCATAGTAAAG+TGG + chr1_1:10743010-10743029 None:intergenic 40.0%
!! CTCTGAAGCTTCTTCCAAAA+TGG - chr1_1:10743044-10743063 Msa0007480:intron 40.0%
! TGAGTTGGAGTTGAATGTCA+AGG - chr1_1:10743077-10743096 Msa0007480:intron 40.0%
GAGTTGGAGTTGAATGTCAA+GGG - chr1_1:10743078-10743097 Msa0007480:intron 40.0%
CATTAAGCTCTTCAACAGTG+AGG + chr1_1:10743137-10743156 None:intergenic 40.0%
CTCACTGTTGAAGAGCTTAA+TGG - chr1_1:10743135-10743154 Msa0007480:intron 40.0%
CTTCGTACAATACCTTTGGA+AGG + chr1_1:10743272-10743291 None:intergenic 40.0%
!! ACTGACAGTTTTCAGGACTA+CGG + chr1_1:10743491-10743510 None:intergenic 40.0%
TGAACAGTGATACACACACT+GGG + chr1_1:10743575-10743594 None:intergenic 40.0%
TTGAACAGTGATACACACAC+TGG + chr1_1:10743576-10743595 None:intergenic 40.0%
CACGTGTGAAACACAAATCA+AGG + chr1_1:10743647-10743666 None:intergenic 40.0%
!! CTTGATTTGTGTTTCACACG+TGG - chr1_1:10743645-10743664 Msa0007480:intron 40.0%
TCAGCTGTTCTGATACACAA+GGG - chr1_1:10744063-10744082 Msa0007480:five_prime_UTR 40.0%
ACACATCAAGGATGTGAACA+CGG - chr1_1:10744116-10744135 Msa0007480:intron 40.0%
CTGGCAAGTATCAAGATATG+AGG + chr1_1:10744513-10744532 None:intergenic 40.0%
AATTGAGTCGTATCAGTGAG+AGG - chr1_1:10744558-10744577 Msa0007480:intron 40.0%
CTACCCTAGCAAATGATACA+AGG + chr1_1:10744804-10744823 None:intergenic 40.0%
! CTTGTATCATTTGCTAGGGT+AGG - chr1_1:10744802-10744821 Msa0007480:intron 40.0%
! GGAGCACCAAGATCAAAAAA+TGG + chr1_1:10745010-10745029 None:intergenic 40.0%
ATTCTTTGTAACGCAGGCAT+CGG + chr1_1:10745256-10745275 None:intergenic 40.0%
CAGGGTAACAGTTTGGATAT+TGG + chr1_1:10745287-10745306 None:intergenic 40.0%
ATATCCAAACTGTTACCCTG+TGG - chr1_1:10745287-10745306 Msa0007480:intron 40.0%
TATCCAAACTGTTACCCTGT+GGG - chr1_1:10745288-10745307 Msa0007480:intron 40.0%
GCATAAAGTTATTGCCCACA+GGG + chr1_1:10745305-10745324 None:intergenic 40.0%
AGCATAAAGTTATTGCCCAC+AGG + chr1_1:10745306-10745325 None:intergenic 40.0%
TGTTTGGACTGTCTGATTGA+TGG - chr1_1:10745579-10745598 Msa0007480:intron 40.0%
GTTTGGACTGTCTGATTGAT+GGG - chr1_1:10745580-10745599 Msa0007480:intron 40.0%
TTTGGACTGTCTGATTGATG+GGG - chr1_1:10745581-10745600 Msa0007480:intron 40.0%
AGTACTACGTGTCTAGATCA+TGG - chr1_1:10745700-10745719 Msa0007480:intron 40.0%
CATCTTACAAGTTAGGCTTG+TGG - chr1_1:10746316-10746335 Msa0007480:intron 40.0%
TCTTACAAGTTAGGCTTGTG+GGG - chr1_1:10746318-10746337 Msa0007480:intron 40.0%
!! CCATATTAGGTATTGGGGTT+AGG + chr1_1:10746354-10746373 None:intergenic 40.0%
CCTAACCCCAATACCTAATA+TGG - chr1_1:10746351-10746370 Msa0007480:intron 40.0%
! TGGCCCAATAGATTTAGGAT+AGG + chr1_1:10746385-10746404 None:intergenic 40.0%
CTAAATCTATTGGGCCACTT+GGG - chr1_1:10746388-10746407 Msa0007480:intron 40.0%
CACACTTCTTACACTTAGGA+AGG + chr1_1:10746430-10746449 None:intergenic 40.0%
TAAGAAGAGCCAAAAACCCT+CGG + chr1_1:10746811-10746830 None:intergenic 40.0%
!! ATCTGAAGTGTTTTGCATGG+AGG - chr1_1:10746923-10746942 Msa0007480:five_prime_UTR 40.0%
TATGTGCAATCTAGAGAGAG+GGG + chr1_1:10747098-10747117 None:intergenic 40.0%
TGTCAGAATTCTTCACAGCT+GGG + chr1_1:10747169-10747188 None:intergenic 40.0%
!! ACGTGGTGCTATATTTCCAA+GGG - chr1_1:10747434-10747453 Msa0007480:intron 40.0%
AAGGGAGTCTTCTGTAAGTT+GGG - chr1_1:10747452-10747471 Msa0007480:intron 40.0%
CTTACTTCTGTCCTACTTTG+TGG - chr1_1:10747546-10747565 Msa0007480:intron 40.0%
TGTCCTACTTTGTGGATACT+AGG - chr1_1:10747554-10747573 Msa0007480:intron 40.0%
! GGAAATGTTTCTGCGAAGAA+TGG - chr1_1:10747610-10747629 Msa0007480:intron 40.0%
CAATCTTTGCAGATACTCCT+TGG + chr1_1:10747649-10747668 None:intergenic 40.0%
ATCTGGATCTTGTGAAGAGA+TGG - chr1_1:10747697-10747716 Msa0007480:intron 40.0%
TGAAGAGATGGCAATATGTG+AGG - chr1_1:10747709-10747728 Msa0007480:intron 40.0%
ATTATTCCCCTTATCCCAGT+TGG + chr1_1:10747744-10747763 None:intergenic 40.0%
GGGAATAATGAAAGTGGGAA+TGG - chr1_1:10747755-10747774 Msa0007480:intron 40.0%
GGCACAAGAAAATCAAGATC+AGG + chr1_1:10747856-10747875 None:intergenic 40.0%
TATGAAGCTAAGGGTCTGTT+TGG - chr1_1:10748087-10748106 Msa0007480:intron 40.0%
GTTATAACTTCCGAAACTGG+TGG - chr1_1:10748223-10748242 Msa0007480:intron 40.0%
! CGCTTTTATTCCACCAGTTT+CGG + chr1_1:10748236-10748255 None:intergenic 40.0%
CGAAACTGGTGGAATAAAAG+CGG - chr1_1:10748234-10748253 Msa0007480:intron 40.0%
ACGACAAAAAAAGCCCTGTT+TGG - chr1_1:10748363-10748382 Msa0007480:intron 40.0%
GTCTTAAAAAAGCTGCTTCC+GGG - chr1_1:10748696-10748715 Msa0007480:intron 40.0%
AAGTTACATATGCACACACC+CGG + chr1_1:10748717-10748736 None:intergenic 40.0%
CAAACCTGCATGTGTTAGAA+GGG + chr1_1:10748997-10749016 None:intergenic 40.0%
ACAAACCTGCATGTGTTAGA+AGG + chr1_1:10748998-10749017 None:intergenic 40.0%
CAGGTTTGTGAAAGTTGCAT+TGG - chr1_1:10749009-10749028 Msa0007480:five_prime_UTR 40.0%
TGTAATTCTTGTACGCGGAA+AGG - chr1_1:10749089-10749108 Msa0007480:five_prime_UTR 40.0%
AAGCCTCCAAGATTGATCTA+GGG + chr1_1:10749119-10749138 None:intergenic 40.0%
ATCAATCTTGGAGGCTTCAA+AGG - chr1_1:10749122-10749141 Msa0007480:five_prime_UTR 40.0%
TCAATCTTGGAGGCTTCAAA+GGG - chr1_1:10749123-10749142 Msa0007480:five_prime_UTR 40.0%
CGCTCCAGGAAGATTAAAAA+TGG - chr1_1:10749177-10749196 Msa0007480:five_prime_UTR 40.0%
! CCCATATCATCATTTTCAGC+TGG + chr1_1:10749245-10749264 None:intergenic 40.0%
GATGATATGGGAATCCTTTG+GGG - chr1_1:10749254-10749273 Msa0007480:five_prime_UTR 40.0%
CATGCAATCACACAATACAG+AGG + chr1_1:10749868-10749887 None:intergenic 40.0%
GCAATGACAAACTAGTACGT+GGG + chr1_1:10750004-10750023 None:intergenic 40.0%
AGCAATGACAAACTAGTACG+TGG + chr1_1:10750005-10750024 None:intergenic 40.0%
TCCATATCTGGTAATTGCTC+AGG - chr1_1:10750061-10750080 Msa0007480:intron 40.0%
ACCTGAGCAATTACCAGATA+TGG + chr1_1:10750065-10750084 None:intergenic 40.0%
GTGGACGTTAACATATTTGC+TGG - chr1_1:10750155-10750174 Msa0007480:intron 40.0%
CTGGAGATCAGATTATTGTG+AGG - chr1_1:10750174-10750193 Msa0007480:intron 40.0%
TGAGCTGTGTAACGAGAAAA+AGG - chr1_1:10750313-10750332 Msa0007480:intron 40.0%
! TGTTTCATCTCAGGTTGTGT+AGG - chr1_1:10750385-10750404 Msa0007480:intron 40.0%
AGACCAAAACATCCAACACT+AGG + chr1_1:10750535-10750554 None:intergenic 40.0%
! GCCCTAGTAATGGCAAATTT+TGG - chr1_1:10750559-10750578 Msa0007480:intron 40.0%
TCGTCTTTCCTTCTTCTCTC+TGG - chr1_1:10740536-10740555 Msa0007480:three_prime_UTR 45.0%
CGACATTACCAGAGAGAAGA+AGG + chr1_1:10740547-10740566 None:intergenic 45.0%
CTTCGTGCCCCTCAAAATAT+AGG + chr1_1:10741054-10741073 None:intergenic 45.0%
! TTGTTGGACTCTGCTTGTTG+AGG - chr1_1:10741074-10741093 Msa0007480:intron 45.0%
GTATCATCATCCCCTTGTCT+CGG + chr1_1:10741521-10741540 None:intergenic 45.0%
AGACAAGGGGATGATGATAC+CGG - chr1_1:10741521-10741540 Msa0007480:intron 45.0%
TCCGAATTGCTTCTGTGCAT+TGG - chr1_1:10741746-10741765 Msa0007480:intron 45.0%
GATTCACGAAGTTCCGTGTT+TGG + chr1_1:10741849-10741868 None:intergenic 45.0%
TCCAAGATTTGTGAGTCCTG+CGG + chr1_1:10741883-10741902 None:intergenic 45.0%
CGAGCCAATTGATCTAACAC+CGG + chr1_1:10742005-10742024 None:intergenic 45.0%
! CGGTGTTAGATCAATTGGCT+CGG - chr1_1:10742003-10742022 Msa0007480:CDS 45.0%
GAAGCAATGTCAGGAACTCA+TGG + chr1_1:10742124-10742143 None:intergenic 45.0%
GCAATGACAGAAGCAATGTC+AGG + chr1_1:10742133-10742152 None:intergenic 45.0%
AATCTCTGTCTTTGTGGGGA+TGG - chr1_1:10742311-10742330 Msa0007480:intron 45.0%
ATCTCTGTCTTTGTGGGGAT+GGG - chr1_1:10742312-10742331 Msa0007480:intron 45.0%
CTTATCACACTAAGTGGGGT+TGG + chr1_1:10742410-10742429 None:intergenic 45.0%
CAACCCCACTTAGTGTGATA+AGG - chr1_1:10742408-10742427 Msa0007480:intron 45.0%
! CCAAGCCTTATCACACTAAG+TGG + chr1_1:10742416-10742435 None:intergenic 45.0%
CCACTTAGTGTGATAAGGCT+TGG - chr1_1:10742413-10742432 Msa0007480:intron 45.0%
GGTCGTTTGCATCATCTTTG+AGG - chr1_1:10742691-10742710 Msa0007480:intron 45.0%
! TTTGCATCATCTTTGAGGGC+TGG - chr1_1:10742696-10742715 Msa0007480:intron 45.0%
GAAAACATGTCGGACACTTC+GGG + chr1_1:10742890-10742909 None:intergenic 45.0%
GGAAAACATGTCGGACACTT+CGG + chr1_1:10742891-10742910 None:intergenic 45.0%
TTCAAGAAAAGGCCGTGTGT+TGG + chr1_1:10742918-10742937 None:intergenic 45.0%
!! CTATGAAGGTGCTCACAATG+TGG - chr1_1:10743015-10743034 Msa0007480:intron 45.0%
TACGGTACACATCCACAAAG+AGG + chr1_1:10743473-10743492 None:intergenic 45.0%
!! TCTTTGTTGTTGTCTGCCAG+AGG + chr1_1:10743951-10743970 None:intergenic 45.0%
AGTTCAGCGGGGAATGAAAA+TGG + chr1_1:10743988-10744007 None:intergenic 45.0%
TGGTGCATACTAAGTTCAGC+GGG + chr1_1:10744000-10744019 None:intergenic 45.0%
GTGGTGCATACTAAGTTCAG+CGG + chr1_1:10744001-10744020 None:intergenic 45.0%
GTCAGCTGTTCTGATACACA+AGG - chr1_1:10744062-10744081 Msa0007480:five_prime_UTR 45.0%
AAGGGAACTGCAGCTAATAG+TGG - chr1_1:10744081-10744100 Msa0007480:intron 45.0%
CACATCAAGGATGTGAACAC+GGG - chr1_1:10744117-10744136 Msa0007480:intron 45.0%
! GTAGCTGACAGTAATGGAAG+TGG - chr1_1:10744269-10744288 Msa0007480:five_prime_UTR 45.0%
! TTTTAGTGAGAACGGGGGAA+TGG - chr1_1:10744385-10744404 Msa0007480:five_prime_UTR 45.0%
CTTTCCTATGGTTGTACTGC+TGG + chr1_1:10744532-10744551 None:intergenic 45.0%
GCAGTACAACCATAGGAAAG+AGG - chr1_1:10744532-10744551 Msa0007480:intron 45.0%
TGAAGCTCCTGTTAAACCAC+TGG - chr1_1:10744607-10744626 Msa0007480:intron 45.0%
CAAAAATACGGTTGCTCCAG+TGG + chr1_1:10744626-10744645 None:intergenic 45.0%
! CACTGGAGCAACCGTATTTT+TGG - chr1_1:10744624-10744643 Msa0007480:intron 45.0%
!! ATAGTGACTGGCTTCGTCAA+TGG - chr1_1:10744651-10744670 Msa0007480:intron 45.0%
!! TAGTGACTGGCTTCGTCAAT+GGG - chr1_1:10744652-10744671 Msa0007480:intron 45.0%
GGGCTGAAAATGTTACTCCA+AGG - chr1_1:10744672-10744691 Msa0007480:intron 45.0%
! TCTTTCCTTGCCTTAGCTTG+AGG - chr1_1:10744772-10744791 Msa0007480:intron 45.0%
AAGGAATGTGCCTCAAGCTA+AGG + chr1_1:10744785-10744804 None:intergenic 45.0%
GGACTTTACCGTGTGAACAT+TGG + chr1_1:10744897-10744916 None:intergenic 45.0%
TCGAGGTAACCTTTGACACT+GGG + chr1_1:10744918-10744937 None:intergenic 45.0%
!! AGCGACTGTCTTCTAAAGCA+TGG - chr1_1:10744941-10744960 Msa0007480:intron 45.0%
!! GCGACTGTCTTCTAAAGCAT+GGG - chr1_1:10744942-10744961 Msa0007480:intron 45.0%
!! ATTGGTAATGGGGCTTGAGA+AGG - chr1_1:10745072-10745091 Msa0007480:intron 45.0%
!! TTGGTAATGGGGCTTGAGAA+GGG - chr1_1:10745073-10745092 Msa0007480:intron 45.0%
! GAGCATTGTGAGATGGCAAA+GGG - chr1_1:10745194-10745213 Msa0007480:intron 45.0%
ATTGTGAGATGGCAAAGGGT+AGG - chr1_1:10745198-10745217 Msa0007480:intron 45.0%
TTGTGAGATGGCAAAGGGTA+GGG - chr1_1:10745199-10745218 Msa0007480:intron 45.0%
TTCTTTGTAACGCAGGCATC+GGG + chr1_1:10745255-10745274 None:intergenic 45.0%
! TTTGGGTTTGTGCTGATGTG+AGG - chr1_1:10745336-10745355 Msa0007480:intron 45.0%
TCGTGTCAGCAGACACTTAT+CGG - chr1_1:10745613-10745632 Msa0007480:intron 45.0%
CTTGCACGGGATATTCTTGA+TGG - chr1_1:10745660-10745679 Msa0007480:intron 45.0%
CAGAAAGGAATAAGGGGTGA+TGG - chr1_1:10745762-10745781 Msa0007480:intron 45.0%
ACTGTGTTCCAACAGTCAAC+TGG - chr1_1:10746074-10746093 Msa0007480:intron 45.0%
CATTGGATAGTGATATGGCC+TGG - chr1_1:10746275-10746294 Msa0007480:intron 45.0%
TAGTGATATGGCCTGGATAG+TGG - chr1_1:10746282-10746301 Msa0007480:intron 45.0%
AGAGATGACAACCACTATCC+AGG + chr1_1:10746296-10746315 None:intergenic 45.0%
CCAAGTGGCCCAATAGATTT+AGG + chr1_1:10746390-10746409 None:intergenic 45.0%
CCTAAATCTATTGGGCCACT+TGG - chr1_1:10746387-10746406 Msa0007480:intron 45.0%
!! TACACTTAGGAAGGAGCATC+TGG + chr1_1:10746421-10746440 None:intergenic 45.0%
GTGTGTTGAGAGTCTGACAT+TGG - chr1_1:10746445-10746464 Msa0007480:five_prime_UTR 45.0%
! ACTTTTGTAGGTTGCAGCAG+TGG - chr1_1:10746664-10746683 Msa0007480:five_prime_UTR 45.0%
ATCAGCTTCAGATGGAGCAT+CGG + chr1_1:10746706-10746725 None:intergenic 45.0%
GGACAACTAATAGCTGCTGT+TGG + chr1_1:10746735-10746754 None:intergenic 45.0%
GCAGCTATTAGTTGTCCACA+TGG - chr1_1:10746738-10746757 Msa0007480:five_prime_UTR 45.0%
TCAGGCATAAGTTGTCCATG+TGG + chr1_1:10746756-10746775 None:intergenic 45.0%
AAGAAGAGCCAAAAACCCTC+GGG + chr1_1:10746810-10746829 None:intergenic 45.0%
! ACTGCATTCAGAGCACTCTT+TGG + chr1_1:10746895-10746914 None:intergenic 45.0%
TTTGCATGGAGGACTCTATG+AGG - chr1_1:10746934-10746953 Msa0007480:five_prime_UTR 45.0%
GTGTCAGAATTCTTCACAGC+TGG + chr1_1:10747170-10747189 None:intergenic 45.0%
!! TCGTGAGTGCTGAGAAACAA+GGG + chr1_1:10747382-10747401 None:intergenic 45.0%
AGCACTCACGACTCATTGAA+AGG - chr1_1:10747391-10747410 Msa0007480:intron 45.0%
!! GACGTGGTGCTATATTTCCA+AGG - chr1_1:10747433-10747452 Msa0007480:intron 45.0%
CAACTTACAGAAGACTCCCT+TGG + chr1_1:10747453-10747472 None:intergenic 45.0%
CAAGGGAGTCTTCTGTAAGT+TGG - chr1_1:10747451-10747470 Msa0007480:intron 45.0%
AGGGAGTCTTCTGTAAGTTG+GGG - chr1_1:10747453-10747472 Msa0007480:intron 45.0%
CTGCCTAGTATCCACAAAGT+AGG + chr1_1:10747560-10747579 None:intergenic 45.0%
CTACTTTGTGGATACTAGGC+AGG - chr1_1:10747558-10747577 Msa0007480:intron 45.0%
!! GATTCGGTGAATGCTACATC+TGG - chr1_1:10747680-10747699 Msa0007480:intron 45.0%
TTCGATCAAGACTTGTCCTG+AGG - chr1_1:10747784-10747803 Msa0007480:intron 45.0%
AACTGGTGGAATAAAAGCGG+TGG - chr1_1:10748237-10748256 Msa0007480:intron 45.0%
GGGTGTGTGCATATGTAACT+TGG - chr1_1:10748716-10748735 Msa0007480:intron 45.0%
TTTGCCCTTCTAACACATGC+AGG - chr1_1:10748990-10749009 Msa0007480:five_prime_UTR 45.0%
AATTCTTGTACGCGGAAAGG+AGG - chr1_1:10749092-10749111 Msa0007480:five_prime_UTR 45.0%
GAAGCCTCCAAGATTGATCT+AGG + chr1_1:10749120-10749139 None:intergenic 45.0%
ACAAACTTGGCTTACCCCAA+AGG + chr1_1:10749271-10749290 None:intergenic 45.0%
! GTTGGCTGGCTAACTTTATG+TGG - chr1_1:10749321-10749340 Msa0007480:five_prime_UTR 45.0%
GCAATCAGGGGCTTAAAGAT+GGG + chr1_1:10749614-10749633 None:intergenic 45.0%
AGCAATCAGGGGCTTAAAGA+TGG + chr1_1:10749615-10749634 None:intergenic 45.0%
ATAAAGGGCAGATTGTAGGG+TGG - chr1_1:10749696-10749715 Msa0007480:intron 45.0%
GGAGAGAGAGCAATCCAATA+TGG + chr1_1:10749805-10749824 None:intergenic 45.0%
CAATCACACAATACAGAGGG+AGG + chr1_1:10749864-10749883 None:intergenic 45.0%
ACCATGTAAATCCTTGTGCC+TGG - chr1_1:10750503-10750522 Msa0007480:intron 45.0%
CCATGTAAATCCTTGTGCCT+GGG - chr1_1:10750504-10750523 Msa0007480:intron 45.0%
CATGTAAATCCTTGTGCCTG+GGG - chr1_1:10750505-10750524 Msa0007480:intron 45.0%
!! TGGTCTTGTTGCCCTAGTAA+TGG - chr1_1:10750549-10750568 Msa0007480:intron 45.0%
GTCCTGTGTTCGACACTTGT+TGG - chr1_1:10741010-10741029 Msa0007480:CDS 50.0%
!! TGCCAACAAGTGTCGAACAC+AGG + chr1_1:10741015-10741034 None:intergenic 50.0%
! TTTGAGGGGCACGAAGTTGT+TGG - chr1_1:10741058-10741077 Msa0007480:intron 50.0%
AAGCACGATCTCACAATCGC+AGG + chr1_1:10741146-10741165 None:intergenic 50.0%
GGCACTCAAAATCTCAGGGA+CGG - chr1_1:10741206-10741225 Msa0007480:intron 50.0%
CAATGAGCAGATCAACGGCT+CGG - chr1_1:10741480-10741499 Msa0007480:intron 50.0%
AATGAGCAGATCAACGGCTC+GGG - chr1_1:10741481-10741500 Msa0007480:intron 50.0%
ACACGACAACCTGAACAGAC+TGG + chr1_1:10741711-10741730 None:intergenic 50.0%
GAATCTGCTAATTCACCCGC+AGG - chr1_1:10741864-10741883 Msa0007480:CDS 50.0%
CCAAGATTTGTGAGTCCTGC+GGG + chr1_1:10741882-10741901 None:intergenic 50.0%
TCACATGAGACACACTTCCC+CGG + chr1_1:10742217-10742236 None:intergenic 50.0%
TCTCTGTCTTTGTGGGGATG+GGG - chr1_1:10742313-10742332 Msa0007480:intron 50.0%
! ACTAAGTGGGGTTGGCAACA+TGG + chr1_1:10742402-10742421 None:intergenic 50.0%
!! AAGAAGCACAGGCACTGACA+TGG - chr1_1:10742787-10742806 Msa0007480:intron 50.0%
! CGGGTTAGACACAGCACAAA+GGG + chr1_1:10742871-10742890 None:intergenic 50.0%
! TCGGGTTAGACACAGCACAA+AGG + chr1_1:10742872-10742891 None:intergenic 50.0%
AAAAGGCCGTGTGTTGGACA+TGG + chr1_1:10742912-10742931 None:intergenic 50.0%
GCGCTATGTCTTCCTTCCAA+AGG - chr1_1:10743257-10743276 Msa0007480:intron 50.0%
AACTCGTGATCGCTACAAGC+AGG + chr1_1:10743796-10743815 None:intergenic 50.0%
GGTGCATACTAAGTTCAGCG+GGG + chr1_1:10743999-10744018 None:intergenic 50.0%
AAGGATGTGAACACGGGCAA+TGG - chr1_1:10744123-10744142 Msa0007480:intron 50.0%
ATGTGAACACGGGCAATGGT+GGG - chr1_1:10744127-10744146 Msa0007480:intron 50.0%
GCAAGGGTAGCTGACAGTAA+TGG - chr1_1:10744263-10744282 Msa0007480:five_prime_UTR 50.0%
CTTGCCAGCAGTACAACCAT+AGG - chr1_1:10744525-10744544 Msa0007480:intron 50.0%
GGTTGCTCCAGTGGTTTAAC+AGG + chr1_1:10744617-10744636 None:intergenic 50.0%
ATGTGCCTCAAGCTAAGGCA+AGG + chr1_1:10744780-10744799 None:intergenic 50.0%
CGGTAAAGTCCCAGTGTCAA+AGG - chr1_1:10744906-10744925 Msa0007480:intron 50.0%
GTCGAGGTAACCTTTGACAC+TGG + chr1_1:10744919-10744938 None:intergenic 50.0%
! AGAAGACAGTCGCTTTGTCG+AGG + chr1_1:10744935-10744954 None:intergenic 50.0%
GGGCTTGAGAAGGGATAGAT+TGG - chr1_1:10745082-10745101 Msa0007480:intron 50.0%
!! GAGTGAGGAGCATTGTGAGA+TGG - chr1_1:10745187-10745206 Msa0007480:intron 50.0%
!! GGAGCATTGTGAGATGGCAA+AGG - chr1_1:10745193-10745212 Msa0007480:intron 50.0%
AAAGGGTAGGGTCTGAGTAG+AGG - chr1_1:10745211-10745230 Msa0007480:intron 50.0%
AAGGGTAGGGTCTGAGTAGA+GGG - chr1_1:10745212-10745231 Msa0007480:intron 50.0%
TTGCCCACAGGGTAACAGTT+TGG + chr1_1:10745294-10745313 None:intergenic 50.0%
! CAGTCCTCGTGAGAAAGTGT+TGG + chr1_1:10745558-10745577 None:intergenic 50.0%
TTCTCACGAGGACTGCTGTT+TGG - chr1_1:10745563-10745582 Msa0007480:intron 50.0%
ACTGTCTGATTGATGGGGCT+CGG - chr1_1:10745586-10745605 Msa0007480:intron 50.0%
CGTGTCAGCAGACACTTATC+GGG - chr1_1:10745614-10745633 Msa0007480:intron 50.0%
AGCTAGTGAGGGGCTTACAT+TGG - chr1_1:10746258-10746277 Msa0007480:intron 50.0%
TTTGTAGGTTGCAGCAGTGG+TGG - chr1_1:10746667-10746686 Msa0007480:five_prime_UTR 50.0%
! GCTCCATCTGAAGCTGATTC+TGG - chr1_1:10746708-10746727 Msa0007480:five_prime_UTR 50.0%
GGTCCAGAATCAGCTTCAGA+TGG + chr1_1:10746714-10746733 None:intergenic 50.0%
CTTATGCCTGAGCAAGCAAC+TGG - chr1_1:10746765-10746784 Msa0007480:five_prime_UTR 50.0%
TTAGCACCAGTTGCTTGCTC+AGG + chr1_1:10746774-10746793 None:intergenic 50.0%
! AGCAAGCAACTGGTGCTAAG+CGG - chr1_1:10746775-10746794 Msa0007480:five_prime_UTR 50.0%
! TGCTTGTTCCCGAGGGTTTT+TGG - chr1_1:10746799-10746818 Msa0007480:five_prime_UTR 50.0%
TGGTGCACTGCTCTGTGAAA+AGG - chr1_1:10747214-10747233 Msa0007480:intron 50.0%
!! GTCGTGAGTGCTGAGAAACA+AGG + chr1_1:10747383-10747402 None:intergenic 50.0%
CGTCTGAGAATCAGTTCAGG+AGG + chr1_1:10747417-10747436 None:intergenic 50.0%
CCACGTCTGAGAATCAGTTC+AGG + chr1_1:10747420-10747439 None:intergenic 50.0%
! CCTGAACTGATTCTCAGACG+TGG - chr1_1:10747417-10747436 Msa0007480:intron 50.0%
! GGGAGTCTTCTGTAAGTTGG+GGG - chr1_1:10747454-10747473 Msa0007480:intron 50.0%
CTTTGTGGATACTAGGCAGG+TGG - chr1_1:10747561-10747580 Msa0007480:intron 50.0%
!! ATGGGTGCTACTGAAACCCA+AGG - chr1_1:10747629-10747648 Msa0007480:intron 50.0%
GGCAATATGTGAGGACCAGT+TGG - chr1_1:10747718-10747737 Msa0007480:intron 50.0%
CAGTTGGCCAACTGGGATAA+GGG - chr1_1:10747734-10747753 Msa0007480:intron 50.0%
AGTTGGCCAACTGGGATAAG+GGG - chr1_1:10747735-10747754 Msa0007480:intron 50.0%
GGCACTGCTATACAGTGCAA+AGG - chr1_1:10748154-10748173 Msa0007480:intron 50.0%
CGGTGGTTGTGCTGTAAGTT+TGG - chr1_1:10748254-10748273 Msa0007480:intron 50.0%
GGAGGTCCCTAGATCAATCT+TGG - chr1_1:10749110-10749129 Msa0007480:five_prime_UTR 50.0%
GGTCCCTAGATCAATCTTGG+AGG - chr1_1:10749113-10749132 Msa0007480:five_prime_UTR 50.0%
GTGCAGGTAGCAATGTGAAC+AGG + chr1_1:10749826-10749845 None:intergenic 50.0%
TCACACAATACAGAGGGAGG+AGG + chr1_1:10749861-10749880 None:intergenic 50.0%
AAAGGATACACAGCGTACCG+AGG - chr1_1:10750331-10750350 Msa0007480:intron 50.0%
AAGGATACACAGCGTACCGA+GGG - chr1_1:10750332-10750351 Msa0007480:intron 50.0%
CCCAGGCACAAGGATTTACA+TGG + chr1_1:10750507-10750526 None:intergenic 50.0%
!! GTCGGTGTCAGTGTCATGTC+AGG - chr1_1:10741237-10741256 Msa0007480:intron 55.0%
ATGAGCAGATCAACGGCTCG+GGG - chr1_1:10741482-10741501 Msa0007480:intron 55.0%
GAACGCGGAAGTCTGGCATA+TGG - chr1_1:10741784-10741803 Msa0007480:intron 55.0%
CCCGCAGGACTCACAAATCT+TGG - chr1_1:10741879-10741898 Msa0007480:CDS 55.0%
!! TGGCATTGACGCACACGTAG+TGG - chr1_1:10742807-10742826 Msa0007480:intron 55.0%
GAGAGGGCTCAGACAATCTG+TGG + chr1_1:10744020-10744039 None:intergenic 55.0%
GATGTGAACACGGGCAATGG+TGG - chr1_1:10744126-10744145 Msa0007480:intron 55.0%
AGGGCCAACACTTTCTCACG+AGG - chr1_1:10745551-10745570 Msa0007480:five_prime_UTR 55.0%
! GCAAGCAACTGGTGCTAAGC+GGG - chr1_1:10746776-10746795 Msa0007480:five_prime_UTR 55.0%
TGAGGACCAGTTGGCCAACT+GGG - chr1_1:10747727-10747746 Msa0007480:intron 55.0%
CCTTATCCCAGTTGGCCAAC+TGG + chr1_1:10747736-10747755 None:intergenic 55.0%
CCAGTTGGCCAACTGGGATA+AGG - chr1_1:10747733-10747752 Msa0007480:intron 55.0%
TGTGGGTGAACAGAAGGGAG+TGG + chr1_1:10748832-10748851 None:intergenic 55.0%
! GACGGGTTTCTAAACGCTCC+AGG - chr1_1:10749163-10749182 Msa0007480:five_prime_UTR 55.0%
ATACAGAGGGAGGAGGATCC+AGG + chr1_1:10749854-10749873 None:intergenic 55.0%
ATACACAGCGTACCGAGGGA+GGG - chr1_1:10750336-10750355 Msa0007480:intron 55.0%
TGTTCCACGAAACCCTCCCT+CGG + chr1_1:10750351-10750370 None:intergenic 55.0%
TCCAACACTAGGTATGCCCC+AGG + chr1_1:10750524-10750543 None:intergenic 55.0%
TCAGGGACGGATCTGCGTGT+CGG - chr1_1:10741219-10741238 Msa0007480:intron 60.0%
!! GCATTGGTTCCGCCTCCAAG+TGG - chr1_1:10741762-10741781 Msa0007480:intron 60.0%
TTCCGCCTCCAAGTGGAACG+CGG - chr1_1:10741769-10741788 Msa0007480:intron 60.0%
TTCCGCGTTCCACTTGGAGG+CGG + chr1_1:10741774-10741793 None:intergenic 60.0%
GACTTCCGCGTTCCACTTGG+AGG + chr1_1:10741777-10741796 None:intergenic 60.0%
CCAGACTTCCGCGTTCCACT+TGG + chr1_1:10741780-10741799 None:intergenic 60.0%
CCAAGTGGAACGCGGAAGTC+TGG - chr1_1:10741777-10741796 Msa0007480:intron 60.0%
!! CAAGGGCGCCCAACAAACAG+AGG + chr1_1:10742593-10742612 None:intergenic 60.0%
! CATCTGGAGCACGACCCAAG+TGG + chr1_1:10746405-10746424 None:intergenic 60.0%
TAAGCGGGTGCTTGTTCCCG+AGG - chr1_1:10746791-10746810 Msa0007480:five_prime_UTR 60.0%
AAGCGGGTGCTTGTTCCCGA+GGG - chr1_1:10746792-10746811 Msa0007480:five_prime_UTR 60.0%
GTGAGGACCAGTTGGCCAAC+TGG - chr1_1:10747726-10747745 Msa0007480:intron 60.0%
TTGCTACCTGCACAGCTGCC+TGG - chr1_1:10749833-10749852 Msa0007480:intron 60.0%
GATACACAGCGTACCGAGGG+AGG - chr1_1:10750335-10750354 Msa0007480:intron 60.0%
CTAGGTATGCCCCAGGCACA+AGG + chr1_1:10750517-10750536 None:intergenic 60.0%
GCCTGGGGCATACCTAGTGT+TGG - chr1_1:10750520-10750539 Msa0007480:intron 60.0%
GAGGATCCAGGCAGCTGTGC+AGG + chr1_1:10749842-10749861 None:intergenic 65.0%
CGTACCGAGGGAGGGTTTCG+TGG - chr1_1:10750344-10750363 Msa0007480:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 10740488 10750633 10740488 ID=Msa0007480;Name=Msa0007480
chr1_1 mRNA 10740488 10750633 10740488 ID=Msa0007480-mRNA-1;Parent=Msa0007480;Name=Msa0007480-mRNA-1;_AED=0.07;_eAED=0.07;_QI=2639|1|1|1|0.84|0.71|14|227|232
chr1_1 exon 10740488 10740809 10740488 ID=Msa0007480-mRNA-1:exon:3933;Parent=Msa0007480-mRNA-1
chr1_1 exon 10740891 10741038 10740891 ID=Msa0007480-mRNA-1:exon:3932;Parent=Msa0007480-mRNA-1
chr1_1 exon 10741846 10742109 10741846 ID=Msa0007480-mRNA-1:exon:3931;Parent=Msa0007480-mRNA-1
chr1_1 exon 10743316 10743545 10743316 ID=Msa0007480-mRNA-1:exon:3930;Parent=Msa0007480-mRNA-1
chr1_1 exon 10743657 10743728 10743657 ID=Msa0007480-mRNA-1:exon:3929;Parent=Msa0007480-mRNA-1
chr1_1 exon 10743886 10744084 10743886 ID=Msa0007480-mRNA-1:exon:3928;Parent=Msa0007480-mRNA-1
chr1_1 exon 10744166 10744447 10744166 ID=Msa0007480-mRNA-1:exon:3927;Parent=Msa0007480-mRNA-1
chr1_1 exon 10745400 10745578 10745400 ID=Msa0007480-mRNA-1:exon:3926;Parent=Msa0007480-mRNA-1
chr1_1 exon 10746140 10746248 10746140 ID=Msa0007480-mRNA-1:exon:3925;Parent=Msa0007480-mRNA-1
chr1_1 exon 10746428 10747163 10746428 ID=Msa0007480-mRNA-1:exon:3924;Parent=Msa0007480-mRNA-1
chr1_1 exon 10747843 10748098 10747843 ID=Msa0007480-mRNA-1:exon:3923;Parent=Msa0007480-mRNA-1
chr1_1 exon 10748881 10749477 10748881 ID=Msa0007480-mRNA-1:exon:3922;Parent=Msa0007480-mRNA-1
chr1_1 exon 10749560 10749660 10749560 ID=Msa0007480-mRNA-1:exon:3921;Parent=Msa0007480-mRNA-1
chr1_1 exon 10750564 10750633 10750564 ID=Msa0007480-mRNA-1:exon:3920;Parent=Msa0007480-mRNA-1
chr1_1 five_prime_UTR 10750564 10750633 10750564 ID=Msa0007480-mRNA-1:five_prime_utr;Parent=Msa0007480-mRNA-1
chr1_1 five_prime_UTR 10749560 10749660 10749560 ID=Msa0007480-mRNA-1:five_prime_utr;Parent=Msa0007480-mRNA-1
chr1_1 five_prime_UTR 10748881 10749477 10748881 ID=Msa0007480-mRNA-1:five_prime_utr;Parent=Msa0007480-mRNA-1
chr1_1 five_prime_UTR 10747843 10748098 10747843 ID=Msa0007480-mRNA-1:five_prime_utr;Parent=Msa0007480-mRNA-1
chr1_1 five_prime_UTR 10746428 10747163 10746428 ID=Msa0007480-mRNA-1:five_prime_utr;Parent=Msa0007480-mRNA-1
chr1_1 five_prime_UTR 10746140 10746248 10746140 ID=Msa0007480-mRNA-1:five_prime_utr;Parent=Msa0007480-mRNA-1
chr1_1 five_prime_UTR 10745400 10745578 10745400 ID=Msa0007480-mRNA-1:five_prime_utr;Parent=Msa0007480-mRNA-1
chr1_1 five_prime_UTR 10744166 10744447 10744166 ID=Msa0007480-mRNA-1:five_prime_utr;Parent=Msa0007480-mRNA-1
chr1_1 five_prime_UTR 10743886 10744084 10743886 ID=Msa0007480-mRNA-1:five_prime_utr;Parent=Msa0007480-mRNA-1
chr1_1 five_prime_UTR 10743657 10743728 10743657 ID=Msa0007480-mRNA-1:five_prime_utr;Parent=Msa0007480-mRNA-1
chr1_1 five_prime_UTR 10743508 10743545 10743508 ID=Msa0007480-mRNA-1:five_prime_utr;Parent=Msa0007480-mRNA-1
chr1_1 CDS 10743316 10743507 10743316 ID=Msa0007480-mRNA-1:cds;Parent=Msa0007480-mRNA-1
chr1_1 CDS 10741846 10742109 10741846 ID=Msa0007480-mRNA-1:cds;Parent=Msa0007480-mRNA-1
chr1_1 CDS 10740891 10741038 10740891 ID=Msa0007480-mRNA-1:cds;Parent=Msa0007480-mRNA-1
chr1_1 CDS 10740715 10740809 10740715 ID=Msa0007480-mRNA-1:cds;Parent=Msa0007480-mRNA-1
chr1_1 three_prime_UTR 10740488 10740714 10740488 ID=Msa0007480-mRNA-1:three_prime_utr;Parent=Msa0007480-mRNA-1
Gene Sequence

>Msa0007480

ATGTTTCTGCGAAGAATGGGTGCTACTGAAACCCAAGGAGTATCTGCAAAGATTGAGAAAATTAATGATTCGGTGAATGCTACATCTGGATCTTGTGAAGAGATGGCAATATGTGAGGACCAGTTGGCCAACTGGGATAAGGGGAATAATGAAAGTGGGAATGGTCAATTTTCGATCAAGACTTGTCCTGAGGTTTGTGAAAGTTGCATTGGAGAAAAGGAAAGCTGTGAGTTAGTGCATAAACTTAATTATTCCAATGAGGATATATGTGTAATTCTTGTACGCGGAAAGGAGGTCCCTAGATCAATCTTGGAGGCTTCAAAGGGATTTGTTGAAACAGATCGACGGGTTTCTAAACGCTCCAGGAAGATTAAAAATGGGAGTTCAATTAATCTAAAAGTGTCTGCTTCAACATCAATTTACCAGCTGAAAATGATGATATGGGAATCCTTTGGGGTTGTCAAAGAAAATCAGATACTACAAAAAGGTGATATAACAATTGATCACATTGACGAAAATACTACACTTGTGGACGTTAACATATTTGCTGGAGATCAGATTATTGTGAGGGACTCTGAGATCCATGAAAATCGAGATATTGCTGATGAGCTGTGTAACGAGAAAAAGGATACACAGCGTACCGAGGGAGGGTTTCGTGGAACACTTTTGACTTCAAATGTTTCATCTCAGGTTGTGTAG
Protein sequence

>Msa0007480

MFLRRMGATETQGVSAKIEKINDSVNATSGSCEEMAICEDQLANWDKGNNESGNGQFSIKTCPEVCESCIGEKESCELVHKLNYSNEDICVILVRGKEVPRSILEASKGFVETDRRVSKRSRKIKNGSSINLKVSASTSIYQLKMMIWESFGVVKENQILQKGDITIDHIDENTTLVDVNIFAGDQIIVRDSEIHENRDIADELCNEKKDTQRTEGGFRGTLLTSNVSSQVV*