AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0052200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0052200 MtrunA17_Chr1g0152771 97.817 733 16 0 1 733 33 765 0.0 1481
Msa0052200 MtrunA17_Chr3g0134621 70.532 733 183 3 1 733 39 738 0.0 1045
Msa0052200 MtrunA17_Chr4g0053781 63.438 733 256 5 1 732 35 756 0.0 976
Msa0052200 MtrunA17_Chr5g0401511 59.016 732 287 5 3 732 42 762 0.0 882
Msa0052200 MtrunA17_Chr4g0020651 58.527 733 289 6 3 732 38 758 0.0 856
Msa0052200 MtrunA17_Chr2g0300751 50.658 760 333 10 1 733 31 775 0.0 719
Msa0052200 MtrunA17_Chr1g0204321 48.069 751 358 10 1 732 41 778 0.0 707
Msa0052200 MtrunA17_Chr8g0344331 50.882 737 329 14 13 733 58 777 0.0 700
Msa0052200 MtrunA17_Chr4g0037221 49.330 746 343 11 1 728 37 765 0.0 696
Msa0052200 MtrunA17_Chr4g0070391 51.595 721 326 9 21 733 49 754 0.0 688
Msa0052200 MtrunA17_Chr8g0344971 46.729 749 359 12 1 731 34 760 0.0 633
Msa0052200 MtrunA17_Chr7g0246461 45.198 708 339 6 29 732 79 741 0.0 614
Msa0052200 MtrunA17_Chr7g0262161 44.370 746 378 15 5 732 36 762 0.0 590
Msa0052200 MtrunA17_Chr3g0120521 43.087 745 382 15 1 728 48 767 0.0 587
Msa0052200 MtrunA17_Chr4g0057481 45.415 698 350 13 48 732 12 691 0.0 575
Msa0052200 MtrunA17_Chr4g0076611 43.077 715 369 12 30 729 1 692 0.0 564
Msa0052200 MtrunA17_Chr4g0057471 43.357 715 375 12 30 731 12 709 0.0 563
Msa0052200 MtrunA17_Chr4g0057531 42.313 735 386 13 13 728 59 774 0.0 559
Msa0052200 MtrunA17_Chr4g0057491 45.997 637 319 11 105 732 3 623 0.0 536
Msa0052200 MtrunA17_Chr5g0423261 46.238 638 318 11 104 732 2 623 0.0 532
Msa0052200 MtrunA17_Chr4g0057511 46.044 632 312 14 111 732 5 617 1.31e-175 516
Msa0052200 MtrunA17_Chr5g0407701 41.113 737 376 16 12 728 49 747 6.02e-175 520
Msa0052200 MtrunA17_Chr8g0345971 41.067 750 393 16 1 728 34 756 1.37e-173 516
Msa0052200 MtrunA17_Chr4g0057061 42.041 735 370 17 13 733 85 777 6.39e-173 515
Msa0052200 MtrunA17_Chr5g0398331 42.366 727 367 15 16 729 62 749 6.71e-173 514
Msa0052200 MtrunA17_Chr8g0369891 40.915 721 365 16 28 728 71 750 6.76e-173 514
Msa0052200 MtrunA17_Chr2g0285121 40.832 769 387 20 8 732 40 784 9.18e-172 512
Msa0052200 MtrunA17_Chr1g0189251 39.866 745 404 14 1 728 34 751 1.46e-171 511
Msa0052200 MtrunA17_Chr7g0250481 40.526 760 387 21 13 728 57 795 1.98e-171 512
Msa0052200 MtrunA17_Chr8g0345981 41.255 749 393 20 1 728 33 755 1.68e-170 508
Msa0052200 MtrunA17_Chr8g0377961 41.287 746 387 17 7 729 56 773 3.93e-170 508
Msa0052200 MtrunA17_Chr2g0285111 41.375 742 375 20 28 732 69 787 1.33e-169 507
Msa0052200 MtrunA17_Chr5g0398311 42.621 725 364 12 16 729 62 745 2.03e-169 505
Msa0052200 MtrunA17_Chr5g0398241 42.019 733 368 14 12 729 62 752 1.54e-167 500
Msa0052200 MtrunA17_Chr8g0345991 39.516 744 409 16 1 728 33 751 1.35e-166 498
Msa0052200 MtrunA17_Chr4g0057461 42.236 644 338 14 105 731 3 629 3.12e-166 493
Msa0052200 MtrunA17_Chr5g0398401 42.292 733 366 15 12 729 62 752 3.13e-166 497
Msa0052200 MtrunA17_Chr4g0026641 41.737 714 372 16 31 728 66 751 7.38e-165 493
Msa0052200 MtrunA17_Chr7g0276151 39.382 744 409 13 1 728 36 753 4.76e-163 489
Msa0052200 MtrunA17_Chr5g0398351 41.564 729 377 14 12 729 813 1503 6.78e-163 508
Msa0052200 MtrunA17_Chr5g0398351 41.346 728 379 13 12 729 43 732 1.24e-158 497
Msa0052200 MtrunA17_Chr7g0250411 40.374 748 394 22 13 730 58 783 3.00e-162 488
Msa0052200 MtrunA17_Chr8g0345961 40.395 760 393 22 1 733 33 759 4.66e-160 481
Msa0052200 MtrunA17_Chr2g0303881 40.483 746 391 19 6 728 8 723 5.09e-160 480
Msa0052200 MtrunA17_Chr7g0250371 40.721 749 391 23 11 728 56 782 2.01e-159 480
Msa0052200 MtrunA17_Chr7g0250391 40.479 751 389 22 11 728 55 780 2.67e-158 478
Msa0052200 MtrunA17_Chr3g0136151 39.034 725 393 16 30 731 64 762 6.93e-155 468
Msa0052200 MtrunA17_Chr7g0250331 39.630 757 371 23 30 728 76 804 2.18e-154 468
Msa0052200 MtrunA17_Chr1g0189561 38.013 755 407 22 1 728 38 758 1.67e-152 462
Msa0052200 MtrunA17_Chr8g0354771 39.216 714 405 11 25 724 59 757 7.49e-152 460
Msa0052200 MtrunA17_Chr7g0266051 40.678 708 372 19 30 728 35 703 8.11e-152 458
Msa0052200 MtrunA17_Chr7g0227991 37.673 722 400 14 11 728 56 731 1.93e-149 453
Msa0052200 MtrunA17_Chr3g0143251 39.463 745 393 24 12 731 54 765 6.13e-147 447
Msa0052200 MtrunA17_Chr7g0248871 37.533 762 408 22 1 728 34 761 2.32e-146 446
Msa0052200 MtrunA17_Chr6g0470881 37.790 733 382 19 11 728 54 727 4.24e-146 444
Msa0052200 MtrunA17_Chr6g0470851 36.878 724 401 16 11 728 54 727 8.47e-146 443
Msa0052200 MtrunA17_Chr5g0439271 40.717 614 315 13 142 728 8 599 4.12e-144 435
Msa0052200 MtrunA17_Chr8g0334521 37.975 711 376 18 29 728 75 731 3.70e-143 437
Msa0052200 MtrunA17_Chr8g0351011 38.049 728 396 19 13 728 65 749 1.27e-141 433
Msa0052200 MtrunA17_Chr1g0146251 38.451 710 378 20 29 728 72 732 1.10e-140 431
Msa0052200 MtrunA17_Chr1g0146271 38.256 711 376 20 29 728 72 730 7.54e-140 428
Msa0052200 MtrunA17_Chr8g0354741 39.688 640 349 11 99 729 21 632 2.66e-137 418
Msa0052200 MtrunA17_Chr1g0170081 36.027 730 400 22 11 728 54 728 1.17e-136 420
Msa0052200 MtrunA17_Chr7g0246451 37.103 725 407 18 13 728 59 743 1.14e-135 418
Msa0052200 MtrunA17_Chr3g0079971 36.463 735 392 22 11 728 53 729 2.89e-134 414
Msa0052200 MtrunA17_Chr8g0334491 36.785 734 388 22 11 728 52 725 7.06e-134 412
Msa0052200 MtrunA17_Chr7g0248861 39.803 608 315 17 1 576 34 622 7.78e-123 387
Msa0052200 MtrunA17_Chr7g0248861 51.111 225 107 3 96 319 637 859 3.12e-56 206
Msa0052200 MtrunA17_Chr8g0376841 40.775 542 285 12 13 538 60 581 2.41e-119 370
Msa0052200 MtrunA17_Chr5g0447171 37.311 528 255 10 252 729 5 506 4.39e-99 315
Msa0052200 MtrunA17_Chr2g0301011 36.131 548 274 11 58 601 3 478 7.02e-98 311
Msa0052200 MtrunA17_Chr4g0071871 32.461 764 416 31 27 728 86 811 1.79e-94 311
Msa0052200 MtrunA17_Chr2g0298601 32.853 764 417 30 25 728 84 811 2.68e-91 303
Msa0052200 MtrunA17_Chr7g0261691 43.478 345 183 5 94 429 6 347 2.41e-88 281
Msa0052200 MtrunA17_Chr3g0143241 40.972 432 228 12 12 429 54 472 5.31e-88 287
Msa0052200 MtrunA17_Chr7g0250461 40.431 418 222 13 13 408 58 470 2.58e-86 281
Msa0052200 MtrunA17_Chr4g0075331 32.716 648 378 19 31 630 15 652 6.01e-78 265
Msa0052200 MtrunA17_Chr7g0261701 44.000 300 148 5 429 728 8 287 8.02e-77 249
Msa0052200 MtrunA17_Chr2g0302951 33.649 633 357 22 18 595 95 719 1.28e-74 258
Msa0052200 MtrunA17_Chr6g0480721 40.615 325 172 6 30 348 5 314 2.39e-74 253
Msa0052200 MtrunA17_Chr6g0480721 39.604 303 157 9 428 728 319 597 3.05e-52 192
Msa0052200 MtrunA17_Chr8g0380961 31.600 750 439 26 31 729 118 844 3.10e-73 254
Msa0052200 MtrunA17_Chr4g0026651 42.857 301 141 5 45 315 2 301 1.98e-70 233
Msa0052200 MtrunA17_Chr4g0035881 38.482 369 162 6 180 538 4 317 1.85e-64 217
Msa0052200 MtrunA17_Chr7g0250441 44.291 289 141 7 445 730 11 282 1.33e-62 212
Msa0052200 MtrunA17_Chr8g0346361 38.253 332 182 6 398 728 185 494 1.57e-62 217
Msa0052200 MtrunA17_Chr8g0346361 46.040 202 90 4 118 317 4 188 1.74e-46 172
Msa0052200 MtrunA17_Chr3g0097061 38.199 322 162 9 58 367 3 299 1.44e-58 205
Msa0052200 MtrunA17_Chr3g0097061 38.462 143 76 2 478 616 307 441 1.46e-19 92.0
Msa0052200 MtrunA17_Chr3g0103071 39.146 281 156 5 231 501 4 279 1.34e-54 189
Msa0052200 MtrunA17_Chr3g0105461 39.228 311 138 7 12 315 53 319 3.78e-52 184
Msa0052200 MtrunA17_Chr3g0105451 37.374 297 155 8 440 731 9 279 1.45e-50 178
Msa0052200 MtrunA17_Chr2g0301911 34.783 368 197 12 113 469 25 360 7.29e-49 176
Msa0052200 MtrunA17_Chr2g0301031 38.290 269 135 6 466 728 1 244 7.41e-49 172
Msa0052200 MtrunA17_Chr2g0312861 38.113 265 141 6 466 728 1 244 2.30e-47 170
Msa0052200 MtrunA17_Chr3g0103061 40.187 214 115 4 13 219 54 261 6.18e-47 167
Msa0052200 MtrunA17_Chr4g0026661 39.773 264 140 6 466 728 12 257 6.63e-47 167
Msa0052200 MtrunA17_Chr2g0312841 44.898 196 90 4 118 311 9 188 4.77e-43 154
Msa0052200 MtrunA17_Chr4g0071191 38.208 212 111 5 447 656 57 250 6.61e-36 136
Msa0052200 MtrunA17_Chr5g0436021 43.373 166 81 2 143 305 31 186 6.30e-35 131
Msa0052200 MtrunA17_Chr2g0301921 35.714 224 121 5 507 728 1 203 1.07e-34 131
Msa0052200 MtrunA17_Chr3g0103081 40.645 155 77 4 574 728 1 140 1.65e-31 120
Msa0052200 MtrunA17_Chr2g0301021 29.700 367 153 12 73 435 98 363 3.59e-31 125
Msa0052200 MtrunA17_Chr5g0418921 44.853 136 74 1 435 569 1 136 5.86e-29 114
Msa0052200 MtrunA17_Chr3g0142981 40.462 173 67 3 146 315 32 171 3.97e-27 109
Msa0052200 MtrunA17_Chr5g0398341 48.454 97 49 1 507 603 1 96 2.20e-22 92.4
Msa0052200 MtrunA17_Chr3g0143021 41.000 100 59 0 30 129 7 106 1.45e-21 90.5
Msa0052200 MtrunA17_Chr3g0143231 54.444 90 40 1 449 538 1 89 6.89e-21 87.8
Msa0052200 MtrunA17_Chr3g0142971 54.651 86 38 1 449 534 1 85 8.10e-20 84.7
Msa0052200 MtrunA17_Chr5g0436031 30.814 172 105 5 558 728 20 178 4.41e-17 80.9
Msa0052200 MtrunA17_Chr4g0035871 37.143 140 84 3 7 142 11 150 4.93e-17 79.0
Msa0052200 MtrunA17_Chr5g0439281 33.600 125 73 3 30 144 73 197 1.15e-16 79.3
Msa0052200 MtrunA17_Chr8g0376851 31.034 174 103 5 561 730 11 171 9.97e-15 72.8
Msa0052200 MtrunA17_Chr3g0077671 47.887 71 36 1 497 566 236 306 3.64e-14 74.3
Msa0052200 MtrunA17_Chr8g0346961 34.146 123 72 3 536 657 1 115 2.28e-12 64.3
Msa0052200 MtrunA17_Chr3g0143011 50.847 59 29 0 266 324 1 59 2.63e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0052200 AT5G67360.1 62.313 735 262 5 1 733 36 757 0.0 954
Msa0052200 AT2G05920.1 52.510 737 326 9 1 732 34 751 0.0 728
Msa0052200 AT3G14067.1 49.465 748 347 9 1 732 37 769 0.0 702
Msa0052200 AT5G51750.1 47.523 747 366 9 1 732 41 776 0.0 696
Msa0052200 AT3G14240.1 48.128 748 362 10 1 731 32 770 0.0 684
Msa0052200 AT4G34980.1 47.903 739 360 11 1 728 32 756 0.0 668
Msa0052200 AT2G04160.1 44.832 745 368 16 1 728 50 768 0.0 583
Msa0052200 AT1G04110.1 43.373 747 387 13 5 731 41 771 0.0 580
Msa0052200 AT1G01900.1 45.392 727 373 9 11 732 66 773 0.0 577
Msa0052200 AT5G59810.1 43.794 717 356 13 30 728 85 772 0.0 555
Msa0052200 AT5G45650.2 40.604 761 380 15 21 731 51 789 4.50e-178 529
Msa0052200 AT5G45650.1 40.604 761 380 15 21 731 51 789 4.50e-178 529
Msa0052200 AT5G59120.1 40.331 724 379 14 11 728 49 725 3.97e-163 488
Msa0052200 AT5G59090.1 39.917 724 382 15 11 728 50 726 7.44e-162 485
Msa0052200 AT1G20160.2 40.247 728 379 18 29 731 27 723 4.35e-161 483
Msa0052200 AT5G59090.3 39.917 724 380 16 11 728 50 724 1.28e-160 482
Msa0052200 AT5G59090.2 39.779 724 378 15 11 728 50 721 2.07e-160 481
Msa0052200 AT1G20160.1 40.247 728 379 18 29 731 66 762 4.20e-160 482
Msa0052200 AT5G58840.1 39.390 721 367 17 10 728 52 704 1.80e-154 466
Msa0052200 AT5G58830.1 37.725 721 380 14 10 728 50 703 7.66e-149 451
Msa0052200 AT5G03620.1 39.096 752 393 19 3 728 44 756 2.32e-148 451
Msa0052200 AT5G59130.3 37.379 725 395 16 10 728 13 684 1.92e-147 447
Msa0052200 AT5G59130.4 37.379 725 395 16 10 728 52 723 2.78e-147 448
Msa0052200 AT3G46850.1 38.343 712 379 18 29 728 69 732 2.06e-145 443
Msa0052200 AT5G59130.1 37.241 725 392 17 10 728 52 719 1.52e-144 441
Msa0052200 AT5G59130.2 37.517 725 384 19 10 728 52 713 4.47e-144 439
Msa0052200 AT4G10550.4 37.898 723 397 16 30 729 16 709 1.09e-143 438
Msa0052200 AT4G10550.2 37.898 723 397 16 30 729 16 709 1.09e-143 438
Msa0052200 AT4G10550.1 37.567 748 413 17 7 729 47 765 1.42e-143 439
Msa0052200 AT4G10550.3 37.567 748 413 17 7 729 63 781 4.15e-143 439
Msa0052200 AT5G59100.1 37.006 708 396 15 29 728 70 735 6.31e-143 437
Msa0052200 AT1G32960.1 38.933 750 401 22 7 729 45 764 7.87e-143 437
Msa0052200 AT4G00230.1 38.409 729 403 17 8 728 51 741 1.79e-142 436
Msa0052200 AT1G20150.1 37.534 746 417 18 9 728 46 768 3.26e-142 436
Msa0052200 AT5G58820.1 36.915 726 378 16 10 728 46 698 7.02e-142 433
Msa0052200 AT3G46840.1 38.223 709 383 18 29 728 70 732 1.32e-141 433
Msa0052200 AT4G10540.1 37.834 748 412 17 7 729 43 762 2.62e-141 434
Msa0052200 AT4G10520.1 36.835 733 422 16 7 729 42 743 6.38e-141 432
Msa0052200 AT5G59190.1 37.332 742 389 22 5 728 3 686 6.65e-141 430
Msa0052200 AT1G32940.4 38.643 722 394 17 30 729 16 710 1.22e-140 430
Msa0052200 AT1G32940.2 38.643 722 394 17 30 729 16 710 1.22e-140 430
Msa0052200 AT1G32940.1 38.019 747 412 18 7 729 42 761 3.30e-140 431
Msa0052200 AT4G26330.2 37.364 736 419 16 14 728 5 719 4.55e-140 429
Msa0052200 AT5G45640.1 37.550 751 374 21 39 731 39 752 1.27e-139 429
Msa0052200 AT1G66220.1 37.588 713 388 15 30 729 75 743 1.97e-137 423
Msa0052200 AT4G10510.2 37.222 720 405 17 30 729 1 693 2.10e-136 419
Msa0052200 AT4G10510.4 37.222 720 405 17 30 729 16 708 2.44e-136 419
Msa0052200 AT4G10510.1 36.913 745 421 18 7 729 35 752 2.64e-136 420
Msa0052200 AT4G26330.1 36.667 750 419 17 14 728 5 733 4.90e-136 419
Msa0052200 AT4G10510.3 36.779 745 422 17 7 729 47 764 5.50e-136 420
Msa0052200 AT5G67090.1 36.265 739 399 18 1 719 29 715 6.40e-136 418
Msa0052200 AT4G21650.1 35.761 769 393 23 7 733 54 763 2.60e-132 410
Msa0052200 AT1G66210.1 36.658 742 412 18 2 729 52 749 2.67e-132 410
Msa0052200 AT5G11940.1 36.582 749 402 23 7 729 50 751 3.25e-131 407
Msa0052200 AT4G21630.1 36.556 755 401 22 7 733 52 756 4.84e-131 406
Msa0052200 AT4G10530.1 35.278 737 419 17 7 729 42 734 1.01e-129 402
Msa0052200 AT1G32950.2 37.673 722 400 19 30 729 16 709 1.20e-129 402
Msa0052200 AT1G32950.1 37.297 740 413 20 13 729 49 760 3.35e-129 402
Msa0052200 AT5G03620.2 42.441 549 286 10 3 538 44 575 3.46e-127 390
Msa0052200 AT4G15040.2 36.066 732 394 19 10 728 13 683 1.72e-126 392
Msa0052200 AT4G15040.1 36.066 732 394 19 10 728 13 683 1.72e-126 392
Msa0052200 AT4G21640.1 34.967 755 385 22 7 733 54 730 1.29e-123 386
Msa0052200 AT4G00230.2 42.272 537 285 11 8 538 51 568 2.77e-119 370
Msa0052200 AT4G21323.1 36.190 735 411 21 13 730 100 793 1.76e-118 375
Msa0052200 AT1G32940.3 40.754 557 291 14 7 538 42 584 4.42e-115 360
Msa0052200 AT4G21326.1 33.151 730 422 15 21 729 2 686 3.07e-114 360
Msa0052200 AT5G58840.3 40.377 530 265 12 10 538 52 531 2.11e-113 353
Msa0052200 AT1G32970.1 35.673 684 371 18 68 729 85 721 1.14e-106 342
Msa0052200 AT1G20160.3 42.048 459 230 9 29 467 66 508 8.87e-103 326
Msa0052200 AT2G19170.1 33.377 758 410 31 31 728 86 808 8.79e-98 320
Msa0052200 AT2G19170.2 33.377 758 410 31 31 728 86 808 8.79e-98 320
Msa0052200 AT4G30020.3 34.446 659 355 23 31 630 86 726 9.45e-93 307
Msa0052200 AT4G30020.1 34.446 659 355 23 31 630 86 726 9.45e-93 307
Msa0052200 AT4G30020.4 34.446 659 355 23 31 630 86 726 9.45e-93 307
Msa0052200 AT4G30020.2 34.446 659 355 23 31 630 86 726 9.45e-93 307
Msa0052200 AT1G30600.1 31.783 774 435 27 18 729 83 825 1.52e-89 299
Msa0052200 AT2G39850.1 29.960 741 435 21 30 728 65 763 5.83e-85 285
Msa0052200 AT5G58840.2 38.344 459 232 12 10 467 52 460 4.24e-83 272
Msa0052200 AT4G20430.3 32.532 624 350 18 31 595 119 730 1.96e-82 280
Msa0052200 AT4G20430.1 32.532 624 350 18 31 595 119 730 1.96e-82 280
Msa0052200 AT5G44530.1 32.078 717 406 27 3 663 80 771 7.23e-82 278
Msa0052200 AT4G20430.2 32.305 616 338 18 31 595 119 706 9.45e-81 275
Msa0052200 AT1G62340.1 33.227 626 343 21 31 594 98 710 1.25e-77 266
Msa0052200 AT5G44530.2 30.997 742 406 28 3 663 80 796 8.86e-77 265
Msa0052200 AT5G44530.3 31.509 530 306 20 3 484 80 600 5.92e-55 199
Msa0052200 AT5G59110.1 39.548 177 94 4 555 730 2 166 5.09e-31 120
Msa0052200 AT1G32980.1 37.879 198 107 5 503 699 3 185 4.82e-30 117

Find 167 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGCTACTCCCTTTGATTT+TGG 0.109596 1_2:-6381712 Msa0052200:CDS
GATTCTGTTGTTTCATCTAT+TGG 0.185134 1_2:+6382903 None:intergenic
ATCTTCGGTGTTAAACTATT+TGG 0.203516 1_2:+6382009 None:intergenic
AGGTGATCAGTGAATGTTTC+TGG 0.210634 1_2:+6383362 None:intergenic
GTAGCAGAAGCTAGCTTATT+TGG 0.211117 1_2:-6382816 Msa0052200:CDS
GGTTTAGCTGCTATAGTTAA+AGG 0.248373 1_2:-6381841 Msa0052200:CDS
TTAACAAGTTCAAAAGTTAT+AGG 0.270427 1_2:-6382318 Msa0052200:CDS
TTGAAAGTGTTTCGGCTTCT+TGG 0.279593 1_2:+6383240 None:intergenic
AGCTTATTTGGTTTAGCTTC+TGG 0.280216 1_2:-6382804 Msa0052200:CDS
CAACAAAGTCAAGTAATTAT+TGG 0.281099 1_2:-6383104 Msa0052200:CDS
CTGATACGAAGTGTAGTTTA+AGG 0.283901 1_2:+6381603 None:intergenic
GTCCATCGGTGGTAGCTTAA+TGG 0.285263 1_2:-6382649 Msa0052200:CDS
CATTCACTGATCACCTTAAC+TGG 0.287049 1_2:-6383355 Msa0052200:CDS
ATTTGTGGCTCAATGCCTTC+TGG 0.287369 1_2:-6381280 Msa0052200:CDS
TTTGAACTTGTTAAAGAATC+AGG 0.291151 1_2:+6382327 None:intergenic
CATACACCTTTCCAGTTACT+TGG 0.300133 1_2:+6383017 None:intergenic
GTATTCTTGACACTGGTATA+TGG 0.300596 1_2:-6383082 Msa0052200:CDS
TGGTGGAATTGGAATGATTT+TGG 0.301625 1_2:-6382229 Msa0052200:CDS
CGATAATTGTTGAATACAAT+AGG 0.303113 1_2:-6381450 Msa0052200:CDS
TTGGAAACTGCTTCGGGAAT+TGG 0.308269 1_2:-6381490 Msa0052200:CDS
GTGAATTTCAACATTATATC+AGG 0.331745 1_2:-6381892 Msa0052200:CDS
GGTAGCAATGAATCAGTTAA+AGG 0.339754 1_2:+6382402 None:intergenic
CCTTCTGGAACTAAGAGTTT+TGG 0.342641 1_2:-6381265 Msa0052200:CDS
TGTTGCTTTGGAAACTGCTT+CGG 0.342679 1_2:-6381497 Msa0052200:CDS
CCTTTCCAGTTACTTGGTAT+TGG 0.343344 1_2:+6383023 None:intergenic
CTATTGTATTCAACAATTAT+CGG 0.355618 1_2:+6381451 None:intergenic
CCTGTATCTGCCCTTGATCC+TGG 0.374211 1_2:-6381673 Msa0052200:CDS
TTGGTCCAATACCAAGTAAC+TGG 0.380238 1_2:-6383028 Msa0052200:CDS
AAAGGGAGTAGCTGGTTTCC+CGG 0.390868 1_2:+6381720 None:intergenic
CAAGTCCAACTAAATGCAAT+TGG 0.390890 1_2:+6381202 None:intergenic
AACACCGAAGATTCTTAAAC+CGG 0.403134 1_2:-6381998 Msa0052200:CDS
GGAGTCCAATTGCATTTAGT+TGG 0.404322 1_2:-6381207 Msa0052200:CDS
TAAGGAGGTGTATGAGAAGA+AGG 0.408200 1_2:-6381320 Msa0052200:CDS
ATAGCAGCAGGGCTCCATTC+GGG 0.410860 1_2:+6381811 None:intergenic
GTTGCTTTGGAAACTGCTTC+GGG 0.416721 1_2:-6381496 Msa0052200:CDS
TGATGAATTCATGTTGTTAC+CGG 0.417719 1_2:+6382989 None:intergenic
GCGATGTGTCGAACCAGTTA+AGG 0.422439 1_2:+6383342 None:intergenic
ACTGGTGCGGTTGGTCCAAC+CGG 0.424860 1_2:-6381937 Msa0052200:CDS
TATAGCAGCAGGGCTCCATT+CGG 0.425762 1_2:+6381810 None:intergenic
AGTTATATAACACTTGGAAA+TGG 0.427001 1_2:-6382462 Msa0052200:CDS
GATAATTGTTGAATACAATA+GGG 0.430834 1_2:-6381449 Msa0052200:CDS
ACAATTGTAGATGTTGCAAC+CGG 0.431910 1_2:-6381739 Msa0052200:CDS
TACAGAGACATCATTGCAAT+TGG 0.432053 1_2:-6382621 Msa0052200:CDS
ACTGAAGCATTATAAGTTCC+CGG 0.437567 1_2:+6381406 None:intergenic
AATGGAGCCCTGCTGCTATA+CGG 0.438332 1_2:-6381807 Msa0052200:CDS
GGCTATTTGGAATGGAATGA+TGG 0.439878 1_2:-6381244 Msa0052200:CDS
GTTTCATCTTCAGCAGGAAA+TGG 0.440416 1_2:-6382567 Msa0052200:CDS
GTGATGCAAGGAAGAAATAC+AGG 0.441085 1_2:-6381549 Msa0052200:CDS
AAAATCGCGGTCAATTGTTC+CGG 0.447700 1_2:+6382488 None:intergenic
TTTGACAAGCTTTCAGCACT+TGG 0.448490 1_2:+6382540 None:intergenic
ATCAACGTCGATGACTATCT+TGG 0.452328 1_2:-6381637 Msa0052200:CDS
TGGAAACTCAAGAGTTGAAA+AGG 0.452364 1_2:-6382271 Msa0052200:CDS
TGGAAAGGTGTATGTGAAAC+CGG 0.454442 1_2:-6383008 Msa0052200:CDS
AAATCCGGTTTAAGAATCTT+CGG 0.457772 1_2:+6381994 None:intergenic
GGTGGATTCTTCGTCGGTGA+AGG 0.457834 1_2:-6381371 Msa0052200:CDS
AATGTTAGTGATTCCTCAGT+TGG 0.458572 1_2:-6382363 Msa0052200:CDS
GGTGAAGGTTGTGGTGGAAC+CGG 0.458748 1_2:-6381356 Msa0052200:CDS
CCAAAATCAAAGGGAGTAGC+TGG 0.462630 1_2:+6381712 None:intergenic
GTGTTCTTGTTGTGTGAAGT+TGG 0.463289 1_2:+6383177 None:intergenic
ACCAACCGCACCAGTCCAAC+CGG 0.463344 1_2:+6381945 None:intergenic
CCGGCTTAGCTCTTGATAAG+AGG 0.466456 1_2:-6381918 Msa0052200:CDS
ACAAGAACACCACAGTTCCT+TGG 0.468381 1_2:-6383164 Msa0052200:CDS
TTTCCAAGTGTTATATAACT+AGG 0.471992 1_2:+6382465 None:intergenic
TTGGTAAACAATGAAGCATA+TGG 0.474801 1_2:-6382210 Msa0052200:CDS
ACACCGGGAGCTATTAAATC+CGG 0.475696 1_2:+6381979 None:intergenic
TGAAGTTGGTATCTAAGTTC+AGG 0.477951 1_2:+6383191 None:intergenic
GGTATAACATCGAGAATTCC+CGG 0.483240 1_2:+6383212 None:intergenic
CATAAACAAGACCAGGATCA+AGG 0.483270 1_2:+6381662 None:intergenic
TTGCTACCACTTGTTTATGC+AGG 0.483986 1_2:-6382387 Msa0052200:CDS
AGAAGAAGGTTTATAAAGTG+AGG 0.484295 1_2:-6381306 Msa0052200:CDS
ATTCTAGTTTCATCTTCAGC+AGG 0.486932 1_2:-6382573 Msa0052200:CDS
TCTTCTACCAGCAGCAGCAT+TGG 0.488105 1_2:-6382163 Msa0052200:CDS
GCCGGTTGGACTGGTGCGGT+TGG 0.491642 1_2:-6381946 Msa0052200:CDS
CGAAACACTTTCAAAACAGC+CGG 0.492606 1_2:-6383231 Msa0052200:CDS
CCTCTTATCAAGAGCTAAGC+CGG 0.497393 1_2:+6381918 None:intergenic
TCTTACAAACGTGGGAACTC+CGG 0.499363 1_2:-6381425 Msa0052200:CDS
CCAGGATCAAGGGCAGATAC+AGG 0.500353 1_2:+6381673 None:intergenic
TACAAAGTGTGCTGGCTTAG+CGG 0.501160 1_2:-6382741 Msa0052200:CDS
GAAACTGCTTCGGGAATTGG+TGG 0.502307 1_2:-6381487 Msa0052200:CDS
TTCAGACATAGCCGCTGGAA+TGG 0.506036 1_2:-6382709 Msa0052200:CDS
GTCAATTGTTCCGGCACCAA+CGG 0.507415 1_2:+6382497 None:intergenic
GGCTACAGAAGCGCGTGTCG+CGG 0.512908 1_2:-6382766 Msa0052200:CDS
TTCTTCGTCGGTGAAGGTTG+TGG 0.515278 1_2:-6381365 Msa0052200:CDS
CTTACAAACGTGGGAACTCC+GGG 0.518280 1_2:-6381424 Msa0052200:CDS
AATGATGGGAAGCATAAGGT+TGG 0.520017 1_2:-6381229 Msa0052200:CDS
ATGATGGGAAGCATAAGGTT+GGG 0.520682 1_2:-6381228 Msa0052200:CDS
TCCAAAGCAACAGCAAAAGA+AGG 0.523715 1_2:+6381508 None:intergenic
AGTGCTGACCGTATAGCAGC+AGG 0.524204 1_2:+6381799 None:intergenic
TATAAAGTGAGGTTTATTTG+TGG 0.524824 1_2:-6381295 Msa0052200:CDS
TTTCCTAGTTATATAACACT+TGG 0.527406 1_2:-6382468 Msa0052200:CDS
CTTCTACCAGCAGCAGCATT+GGG 0.527599 1_2:-6382162 Msa0052200:CDS
TTCACTTCAGACATAGCCGC+TGG 0.535182 1_2:-6382714 Msa0052200:CDS
TGGATAACAACCGTTGGTGC+CGG 0.538077 1_2:-6382507 Msa0052200:CDS
GTCATCGGTGGATTCTTCGT+CGG 0.538843 1_2:-6381377 Msa0052200:CDS
TCCTTAAAACTAATAGTCTC+CGG 0.539473 1_2:+6381337 None:intergenic
ACTGCTTCGGGAATTGGTGG+TGG 0.540817 1_2:-6381484 Msa0052200:CDS
ATGTTAGTGATTCCTCAGTT+GGG 0.541062 1_2:-6382362 Msa0052200:CDS
AGCTTAGATGACACAGGACT+TGG 0.541610 1_2:-6383047 Msa0052200:CDS
GCACCAACGGTTGTTATCCA+TGG 0.543316 1_2:+6382510 None:intergenic
AAACCGGATTTAATAGCTCC+CGG 0.547291 1_2:-6381982 Msa0052200:CDS
GAACTGAATGCTGCTACCAC+TGG 0.548090 1_2:+6382039 None:intergenic
ATTATTGGTATTCTTGACAC+TGG 0.549582 1_2:-6383089 Msa0052200:CDS
TCGCGGCTTACAAAGTGTGC+TGG 0.550855 1_2:-6382749 Msa0052200:CDS
AGATCAGCTAGAGATGATGA+TGG 0.551599 1_2:-6382879 Msa0052200:CDS
TTAAAGGTGCTTACCCCGAA+TGG 0.551612 1_2:-6381825 Msa0052200:CDS
ACATACAAACACATAGCTCA+TGG 0.551792 1_2:-6383284 Msa0052200:CDS
CACTGCAACAGAAAACTCAT+AGG 0.553279 1_2:-6382966 Msa0052200:CDS
ATCAGTGAATGTTTCTGGCA+TGG 0.556012 1_2:+6383367 None:intergenic
GAGAGTTTACTTGTGATGCA+AGG 0.557581 1_2:-6381561 Msa0052200:CDS
GCTTTCACAGCAATGTCTCA+TGG 0.557846 1_2:-6382597 Msa0052200:CDS
TGACCAGATCCAAAATCAAA+GGG 0.557897 1_2:+6381703 None:intergenic
GGAAACTCAAGAGTTGAAAA+GGG 0.567502 1_2:-6382270 Msa0052200:CDS
GTGACCAGATCCAAAATCAA+AGG 0.568440 1_2:+6381702 None:intergenic
TCATCTTCAGCAGGAAATGG+TGG 0.571086 1_2:-6382564 Msa0052200:CDS
TGCTTCAGTGGTGTTGTCAT+CGG 0.571470 1_2:-6381392 Msa0052200:CDS
TTAGCTTCTGGTACAGCAAG+AGG 0.571516 1_2:-6382792 Msa0052200:CDS
CACACATTAACAACAGCAGC+AGG 0.573163 1_2:-6382846 Msa0052200:CDS
TTATCAAGAGCTAAGCCGGT+TGG 0.573292 1_2:+6381922 None:intergenic
GCTATTTGGAATGGAATGAT+GGG 0.577630 1_2:-6381243 Msa0052200:CDS
ATGGAATGATGGGAAGCATA+AGG 0.577925 1_2:-6381233 Msa0052200:CDS
TTCTTGGTTAGTTAGTCTTG+TGG 0.579365 1_2:+6383256 None:intergenic
CAATAGGGTTCTTACAAACG+TGG 0.583115 1_2:-6381434 Msa0052200:CDS
AAAGGGTATGAAGCAGCACT+TGG 0.586233 1_2:-6382927 Msa0052200:CDS
ATCCATTAAGCTACCACCGA+TGG 0.586499 1_2:+6382647 None:intergenic
TTCGTCGGTGAAGGTTGTGG+TGG 0.587445 1_2:-6381362 Msa0052200:CDS
ATAAACAAGACCAGGATCAA+GGG 0.591716 1_2:+6381663 None:intergenic
GTAGCAGCATTCAGTTCAAG+AGG 0.593998 1_2:-6382033 Msa0052200:CDS
TTTAGCCGGTTGGACTGGTG+CGG 0.595588 1_2:-6381950 Msa0052200:CDS
CCAAAACTCTTAGTTCCAGA+AGG 0.602325 1_2:+6381265 None:intergenic
CCGGCTAAAATGTTTACACC+GGG 0.602678 1_2:+6381964 None:intergenic
TTCTGGTACAGCAAGAGGCA+TGG 0.603149 1_2:-6382787 Msa0052200:CDS
TTCAGTGGTGTTGTCATCGG+TGG 0.603360 1_2:-6381389 Msa0052200:CDS
TGACTTTGTTGTCTAGAGTG+AGG 0.605702 1_2:+6383116 None:intergenic
ACCGGCTAAAATGTTTACAC+CGG 0.608297 1_2:+6381963 None:intergenic
TAGCAGCAGGGCTCCATTCG+GGG 0.609527 1_2:+6381812 None:intergenic
AAAATTGTGATATGTGAAAG+AGG 0.610230 1_2:-6382294 Msa0052200:CDS
ATGTCATGTCCTCACGCGAG+TGG 0.613061 1_2:-6381862 Msa0052200:CDS
CAATTGTAGATGTTGCAACC+GGG 0.615237 1_2:-6381738 Msa0052200:CDS
AACATCTTATCGATGTCCAT+CGG 0.617399 1_2:-6382663 Msa0052200:CDS
TGCTGAAAGCTTGTCAAATG+TGG 0.618029 1_2:-6382535 Msa0052200:CDS
ATGGATAAAGCTATAGAAGA+CGG 0.621009 1_2:-6382690 Msa0052200:CDS
ACATTACCTGCATAAACAAG+TGG 0.621072 1_2:+6382381 None:intergenic
CCAATACCAAGTAACTGGAA+AGG 0.624680 1_2:-6383023 Msa0052200:CDS
GCTAGAGATGATGATGGACA+TGG 0.627265 1_2:-6382873 Msa0052200:CDS
GCTTGTCAAATGTGGCACCA+TGG 0.628234 1_2:-6382527 Msa0052200:CDS
GGGAACTTATAATGCTTCAG+TGG 0.630760 1_2:-6381404 Msa0052200:CDS
GAAACACTTTCAAAACAGCC+GGG 0.640013 1_2:-6383230 Msa0052200:CDS
ACAGAAAACTCATAGGTGCA+AGG 0.641137 1_2:-6382959 Msa0052200:CDS
AGTGAATGTTTCTGGCATGG+TGG 0.641351 1_2:+6383370 None:intergenic
TTGATGTCATAAACAAGACC+AGG 0.651872 1_2:+6381655 None:intergenic
GTGCTGACCGTATAGCAGCA+GGG 0.654668 1_2:+6381800 None:intergenic
ACAAGTTCAACCTTCACCAG+TGG 0.655564 1_2:-6382055 Msa0052200:CDS
ACTCGCGTGAGGACATGACA+TGG 0.656672 1_2:+6381864 None:intergenic
TATAGCTTTATCCATTCCAG+CGG 0.658219 1_2:+6382698 None:intergenic
AATAGGGTTCTTACAAACGT+GGG 0.661504 1_2:-6381433 Msa0052200:CDS
ATCTTATCGATGTCCATCGG+TGG 0.665661 1_2:-6382660 Msa0052200:CDS
TTTGTACGAGGTGTATGCTG+TGG 0.671813 1_2:+6381771 None:intergenic
TGATGCAAGGAAGAAATACA+GGG 0.674984 1_2:-6381548 Msa0052200:CDS
ACTGGTGCATCACTTTACAG+TGG 0.678217 1_2:-6382429 Msa0052200:CDS
AATGCTGCTACCACTGGTGA+AGG 0.679217 1_2:+6382045 None:intergenic
GCAGCTAAACCACTCGCGTG+AGG 0.682555 1_2:+6381853 None:intergenic
TTTGGCAAACCAAGGAACTG+TGG 0.689360 1_2:+6383155 None:intergenic
TTATATAACTAGGAAAATCG+CGG 0.698687 1_2:+6382475 None:intergenic
ATCAGATCAAACTTGCTGCG+AGG 0.707097 1_2:-6381585 Msa0052200:CDS
GCACCATGGATAACAACCGT+TGG 0.713041 1_2:-6382513 Msa0052200:CDS
ATTGTGATATGTGAAAGAGG+TGG 0.737979 1_2:-6382291 Msa0052200:CDS
TATACAAAGATACCCAACTG+AGG 0.743432 1_2:+6382350 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACAAGTTCAAAAGTTAT+AGG - chr1_2:6382263-6382282 Msa0052200:CDS 20.0%
!! CTATTGTATTCAACAATTAT+CGG + chr1_2:6383133-6383152 None:intergenic 20.0%
!! GATAATTGTTGAATACAATA+GGG - chr1_2:6383132-6383151 Msa0052200:CDS 20.0%
!! TTAACAAGTTCAAAAGTTAT+AGG - chr1_2:6382263-6382282 Msa0052200:CDS 20.0%
!! CTATTGTATTCAACAATTAT+CGG + chr1_2:6383133-6383152 None:intergenic 20.0%
!! GATAATTGTTGAATACAATA+GGG - chr1_2:6383132-6383151 Msa0052200:CDS 20.0%
! CAACAAAGTCAAGTAATTAT+TGG - chr1_2:6381477-6381496 Msa0052200:CDS 25.0%
! TTATATAACTAGGAAAATCG+CGG + chr1_2:6382109-6382128 None:intergenic 25.0%
! TTTCCTAGTTATATAACACT+TGG - chr1_2:6382113-6382132 Msa0052200:CDS 25.0%
! TTTCCAAGTGTTATATAACT+AGG + chr1_2:6382119-6382138 None:intergenic 25.0%
! AGTTATATAACACTTGGAAA+TGG - chr1_2:6382119-6382138 Msa0052200:CDS 25.0%
!!! TTTGAACTTGTTAAAGAATC+AGG + chr1_2:6382257-6382276 None:intergenic 25.0%
! AAAATTGTGATATGTGAAAG+AGG - chr1_2:6382287-6382306 Msa0052200:CDS 25.0%
! GTGAATTTCAACATTATATC+AGG - chr1_2:6382689-6382708 Msa0052200:CDS 25.0%
! CGATAATTGTTGAATACAAT+AGG - chr1_2:6383131-6383150 Msa0052200:CDS 25.0%
! TATAAAGTGAGGTTTATTTG+TGG - chr1_2:6383286-6383305 Msa0052200:CDS 25.0%
! CAACAAAGTCAAGTAATTAT+TGG - chr1_2:6381477-6381496 Msa0052200:CDS 25.0%
! TTATATAACTAGGAAAATCG+CGG + chr1_2:6382109-6382128 None:intergenic 25.0%
! TTTCCTAGTTATATAACACT+TGG - chr1_2:6382113-6382132 Msa0052200:CDS 25.0%
! TTTCCAAGTGTTATATAACT+AGG + chr1_2:6382119-6382138 None:intergenic 25.0%
! AGTTATATAACACTTGGAAA+TGG - chr1_2:6382119-6382138 Msa0052200:CDS 25.0%
!!! TTTGAACTTGTTAAAGAATC+AGG + chr1_2:6382257-6382276 None:intergenic 25.0%
! AAAATTGTGATATGTGAAAG+AGG - chr1_2:6382287-6382306 Msa0052200:CDS 25.0%
! GTGAATTTCAACATTATATC+AGG - chr1_2:6382689-6382708 Msa0052200:CDS 25.0%
! CGATAATTGTTGAATACAAT+AGG - chr1_2:6383131-6383150 Msa0052200:CDS 25.0%
! TATAAAGTGAGGTTTATTTG+TGG - chr1_2:6383286-6383305 Msa0052200:CDS 25.0%
!!! GGTAAAAGAGTGTTTGTTTT+TGG + chr1_2:6381447-6381466 None:intergenic 30.0%
ATTATTGGTATTCTTGACAC+TGG - chr1_2:6381492-6381511 Msa0052200:CDS 30.0%
TGATGAATTCATGTTGTTAC+CGG + chr1_2:6381595-6381614 None:intergenic 30.0%
! GTGCAAGGTTTTTCTTAAAA+GGG - chr1_2:6381637-6381656 Msa0052200:CDS 30.0%
!! GATTCTGTTGTTTCATCTAT+TGG + chr1_2:6381681-6381700 None:intergenic 30.0%
ATGGATAAAGCTATAGAAGA+CGG - chr1_2:6381891-6381910 Msa0052200:CDS 30.0%
TTGGTAAACAATGAAGCATA+TGG - chr1_2:6382371-6382390 Msa0052200:CDS 30.0%
!! CAAGAGCTAAACTTGTTTTT+GGG - chr1_2:6382492-6382511 Msa0052200:CDS 30.0%
!!! AAGAGCTAAACTTGTTTTTG+GGG - chr1_2:6382493-6382512 Msa0052200:CDS 30.0%
!! ATCTTCGGTGTTAAACTATT+TGG + chr1_2:6382575-6382594 None:intergenic 30.0%
AAATCCGGTTTAAGAATCTT+CGG + chr1_2:6382590-6382609 None:intergenic 30.0%
TCCTTAAAACTAATAGTCTC+CGG + chr1_2:6383247-6383266 None:intergenic 30.0%
AGAAGAAGGTTTATAAAGTG+AGG - chr1_2:6383275-6383294 Msa0052200:CDS 30.0%
!!! AACTAAGAGTTTTGGCTATT+TGG - chr1_2:6383324-6383343 Msa0052200:CDS 30.0%
!!! GGTAAAAGAGTGTTTGTTTT+TGG + chr1_2:6381447-6381466 None:intergenic 30.0%
ATTATTGGTATTCTTGACAC+TGG - chr1_2:6381492-6381511 Msa0052200:CDS 30.0%
TGATGAATTCATGTTGTTAC+CGG + chr1_2:6381595-6381614 None:intergenic 30.0%
! GTGCAAGGTTTTTCTTAAAA+GGG - chr1_2:6381637-6381656 Msa0052200:CDS 30.0%
!! GATTCTGTTGTTTCATCTAT+TGG + chr1_2:6381681-6381700 None:intergenic 30.0%
ATGGATAAAGCTATAGAAGA+CGG - chr1_2:6381891-6381910 Msa0052200:CDS 30.0%
TTGGTAAACAATGAAGCATA+TGG - chr1_2:6382371-6382390 Msa0052200:CDS 30.0%
!! CAAGAGCTAAACTTGTTTTT+GGG - chr1_2:6382492-6382511 Msa0052200:CDS 30.0%
!!! AAGAGCTAAACTTGTTTTTG+GGG - chr1_2:6382493-6382512 Msa0052200:CDS 30.0%
!! ATCTTCGGTGTTAAACTATT+TGG + chr1_2:6382575-6382594 None:intergenic 30.0%
AAATCCGGTTTAAGAATCTT+CGG + chr1_2:6382590-6382609 None:intergenic 30.0%
TCCTTAAAACTAATAGTCTC+CGG + chr1_2:6383247-6383266 None:intergenic 30.0%
AGAAGAAGGTTTATAAAGTG+AGG - chr1_2:6383275-6383294 Msa0052200:CDS 30.0%
!!! AACTAAGAGTTTTGGCTATT+TGG - chr1_2:6383324-6383343 Msa0052200:CDS 30.0%
ACATACAAACACATAGCTCA+TGG - chr1_2:6381297-6381316 Msa0052200:CDS 35.0%
!! TTCTTGGTTAGTTAGTCTTG+TGG + chr1_2:6381328-6381347 None:intergenic 35.0%
!! TGAAGTTGGTATCTAAGTTC+AGG + chr1_2:6381393-6381412 None:intergenic 35.0%
!!! TGTTTGTTTTTGGCAAACCA+AGG + chr1_2:6381437-6381456 None:intergenic 35.0%
GTATTCTTGACACTGGTATA+TGG - chr1_2:6381499-6381518 Msa0052200:CDS 35.0%
!!! TCATCTAAGCTTTTTAGCTC+TGG + chr1_2:6381525-6381544 None:intergenic 35.0%
CTAAAAAGCTTAGATGACAC+AGG - chr1_2:6381528-6381547 Msa0052200:CDS 35.0%
! GGTGCAAGGTTTTTCTTAAA+AGG - chr1_2:6381636-6381655 Msa0052200:CDS 35.0%
! AGCTTATTTGGTTTAGCTTC+TGG - chr1_2:6381777-6381796 Msa0052200:CDS 35.0%
!! TATAGCTTTATCCATTCCAG+CGG + chr1_2:6381886-6381905 None:intergenic 35.0%
AACATCTTATCGATGTCCAT+CGG - chr1_2:6381918-6381937 Msa0052200:CDS 35.0%
TACAGAGACATCATTGCAAT+TGG - chr1_2:6381960-6381979 Msa0052200:CDS 35.0%
!! ATTCTAGTTTCATCTTCAGC+AGG - chr1_2:6382008-6382027 Msa0052200:CDS 35.0%
GGAAATGGAAAAACTTACAC+TGG - chr1_2:6382134-6382153 Msa0052200:CDS 35.0%
GGTAGCAATGAATCAGTTAA+AGG + chr1_2:6382182-6382201 None:intergenic 35.0%
ACATTACCTGCATAAACAAG+TGG + chr1_2:6382203-6382222 None:intergenic 35.0%
AATGTTAGTGATTCCTCAGT+TGG - chr1_2:6382218-6382237 Msa0052200:CDS 35.0%
ATGTTAGTGATTCCTCAGTT+GGG - chr1_2:6382219-6382238 Msa0052200:CDS 35.0%
TATACAAAGATACCCAACTG+AGG + chr1_2:6382234-6382253 None:intergenic 35.0%
ATTGTGATATGTGAAAGAGG+TGG - chr1_2:6382290-6382309 Msa0052200:CDS 35.0%
TGGAAACTCAAGAGTTGAAA+AGG - chr1_2:6382310-6382329 Msa0052200:CDS 35.0%
GGAAACTCAAGAGTTGAAAA+GGG - chr1_2:6382311-6382330 Msa0052200:CDS 35.0%
!! GGTCTTGTTGTAAAAAAAGC+TGG - chr1_2:6382332-6382351 Msa0052200:CDS 35.0%
! CTTGTTGTAAAAAAAGCTGG+TGG - chr1_2:6382335-6382354 Msa0052200:CDS 35.0%
GTAAAAAAAGCTGGTGGAAT+TGG - chr1_2:6382341-6382360 Msa0052200:CDS 35.0%
! TGGTGGAATTGGAATGATTT+TGG - chr1_2:6382352-6382371 Msa0052200:CDS 35.0%
!! CCAAAAACAAGTTTAGCTCT+TGG + chr1_2:6382494-6382513 None:intergenic 35.0%
!! CCAAGAGCTAAACTTGTTTT+TGG - chr1_2:6382491-6382510 Msa0052200:CDS 35.0%
!!! AGAGCTAAACTTGTTTTTGG+GGG - chr1_2:6382494-6382513 Msa0052200:CDS 35.0%
AACACCGAAGATTCTTAAAC+CGG - chr1_2:6382583-6382602 Msa0052200:CDS 35.0%
GGTTTAGCTGCTATAGTTAA+AGG - chr1_2:6382740-6382759 Msa0052200:CDS 35.0%
ACAATTGTAGATGTTGCAAC+CGG - chr1_2:6382842-6382861 Msa0052200:CDS 35.0%
TGACCAGATCCAAAATCAAA+GGG + chr1_2:6382881-6382900 None:intergenic 35.0%
ATAAACAAGACCAGGATCAA+GGG + chr1_2:6382921-6382940 None:intergenic 35.0%
TTGATGTCATAAACAAGACC+AGG + chr1_2:6382929-6382948 None:intergenic 35.0%
CTGATACGAAGTGTAGTTTA+AGG + chr1_2:6382981-6383000 None:intergenic 35.0%
TGATGCAAGGAAGAAATACA+GGG - chr1_2:6383033-6383052 Msa0052200:CDS 35.0%
AATAGGGTTCTTACAAACGT+GGG - chr1_2:6383148-6383167 Msa0052200:CDS 35.0%
! ACTGAAGCATTATAAGTTCC+CGG + chr1_2:6383178-6383197 None:intergenic 35.0%
!!! ACCGGAGACTATTAGTTTTA+AGG - chr1_2:6383243-6383262 Msa0052200:CDS 35.0%
!!! GGAGACTATTAGTTTTAAGG+AGG - chr1_2:6383246-6383265 Msa0052200:CDS 35.0%
!!! AGAGTTTTGGCTATTTGGAA+TGG - chr1_2:6383329-6383348 Msa0052200:CDS 35.0%
! GCTATTTGGAATGGAATGAT+GGG - chr1_2:6383338-6383357 Msa0052200:CDS 35.0%
CAAGTCCAACTAAATGCAAT+TGG + chr1_2:6383382-6383401 None:intergenic 35.0%
ACATACAAACACATAGCTCA+TGG - chr1_2:6381297-6381316 Msa0052200:CDS 35.0%
!! TTCTTGGTTAGTTAGTCTTG+TGG + chr1_2:6381328-6381347 None:intergenic 35.0%
!! TGAAGTTGGTATCTAAGTTC+AGG + chr1_2:6381393-6381412 None:intergenic 35.0%
!!! TGTTTGTTTTTGGCAAACCA+AGG + chr1_2:6381437-6381456 None:intergenic 35.0%
GTATTCTTGACACTGGTATA+TGG - chr1_2:6381499-6381518 Msa0052200:CDS 35.0%
!!! TCATCTAAGCTTTTTAGCTC+TGG + chr1_2:6381525-6381544 None:intergenic 35.0%
CTAAAAAGCTTAGATGACAC+AGG - chr1_2:6381528-6381547 Msa0052200:CDS 35.0%
! GGTGCAAGGTTTTTCTTAAA+AGG - chr1_2:6381636-6381655 Msa0052200:CDS 35.0%
! AGCTTATTTGGTTTAGCTTC+TGG - chr1_2:6381777-6381796 Msa0052200:CDS 35.0%
!! TATAGCTTTATCCATTCCAG+CGG + chr1_2:6381886-6381905 None:intergenic 35.0%
AACATCTTATCGATGTCCAT+CGG - chr1_2:6381918-6381937 Msa0052200:CDS 35.0%
TACAGAGACATCATTGCAAT+TGG - chr1_2:6381960-6381979 Msa0052200:CDS 35.0%
!! ATTCTAGTTTCATCTTCAGC+AGG - chr1_2:6382008-6382027 Msa0052200:CDS 35.0%
GGAAATGGAAAAACTTACAC+TGG - chr1_2:6382134-6382153 Msa0052200:CDS 35.0%
GGTAGCAATGAATCAGTTAA+AGG + chr1_2:6382182-6382201 None:intergenic 35.0%
ACATTACCTGCATAAACAAG+TGG + chr1_2:6382203-6382222 None:intergenic 35.0%
AATGTTAGTGATTCCTCAGT+TGG - chr1_2:6382218-6382237 Msa0052200:CDS 35.0%
ATGTTAGTGATTCCTCAGTT+GGG - chr1_2:6382219-6382238 Msa0052200:CDS 35.0%
TATACAAAGATACCCAACTG+AGG + chr1_2:6382234-6382253 None:intergenic 35.0%
ATTGTGATATGTGAAAGAGG+TGG - chr1_2:6382290-6382309 Msa0052200:CDS 35.0%
TGGAAACTCAAGAGTTGAAA+AGG - chr1_2:6382310-6382329 Msa0052200:CDS 35.0%
GGAAACTCAAGAGTTGAAAA+GGG - chr1_2:6382311-6382330 Msa0052200:CDS 35.0%
!! GGTCTTGTTGTAAAAAAAGC+TGG - chr1_2:6382332-6382351 Msa0052200:CDS 35.0%
! CTTGTTGTAAAAAAAGCTGG+TGG - chr1_2:6382335-6382354 Msa0052200:CDS 35.0%
GTAAAAAAAGCTGGTGGAAT+TGG - chr1_2:6382341-6382360 Msa0052200:CDS 35.0%
! TGGTGGAATTGGAATGATTT+TGG - chr1_2:6382352-6382371 Msa0052200:CDS 35.0%
!! CCAAAAACAAGTTTAGCTCT+TGG + chr1_2:6382494-6382513 None:intergenic 35.0%
!! CCAAGAGCTAAACTTGTTTT+TGG - chr1_2:6382491-6382510 Msa0052200:CDS 35.0%
!!! AGAGCTAAACTTGTTTTTGG+GGG - chr1_2:6382494-6382513 Msa0052200:CDS 35.0%
AACACCGAAGATTCTTAAAC+CGG - chr1_2:6382583-6382602 Msa0052200:CDS 35.0%
GGTTTAGCTGCTATAGTTAA+AGG - chr1_2:6382740-6382759 Msa0052200:CDS 35.0%
ACAATTGTAGATGTTGCAAC+CGG - chr1_2:6382842-6382861 Msa0052200:CDS 35.0%
TGACCAGATCCAAAATCAAA+GGG + chr1_2:6382881-6382900 None:intergenic 35.0%
ATAAACAAGACCAGGATCAA+GGG + chr1_2:6382921-6382940 None:intergenic 35.0%
TTGATGTCATAAACAAGACC+AGG + chr1_2:6382929-6382948 None:intergenic 35.0%
CTGATACGAAGTGTAGTTTA+AGG + chr1_2:6382981-6383000 None:intergenic 35.0%
TGATGCAAGGAAGAAATACA+GGG - chr1_2:6383033-6383052 Msa0052200:CDS 35.0%
AATAGGGTTCTTACAAACGT+GGG - chr1_2:6383148-6383167 Msa0052200:CDS 35.0%
! ACTGAAGCATTATAAGTTCC+CGG + chr1_2:6383178-6383197 None:intergenic 35.0%
!!! ACCGGAGACTATTAGTTTTA+AGG - chr1_2:6383243-6383262 Msa0052200:CDS 35.0%
!!! GGAGACTATTAGTTTTAAGG+AGG - chr1_2:6383246-6383265 Msa0052200:CDS 35.0%
!!! AGAGTTTTGGCTATTTGGAA+TGG - chr1_2:6383329-6383348 Msa0052200:CDS 35.0%
! GCTATTTGGAATGGAATGAT+GGG - chr1_2:6383338-6383357 Msa0052200:CDS 35.0%
CAAGTCCAACTAAATGCAAT+TGG + chr1_2:6383382-6383401 None:intergenic 35.0%
!! ATCAGTGAATGTTTCTGGCA+TGG + chr1_2:6381217-6381236 None:intergenic 40.0%
AGGTGATCAGTGAATGTTTC+TGG + chr1_2:6381222-6381241 None:intergenic 40.0%
CATTCACTGATCACCTTAAC+TGG - chr1_2:6381226-6381245 Msa0052200:CDS 40.0%
!! TTGAAAGTGTTTCGGCTTCT+TGG + chr1_2:6381344-6381363 None:intergenic 40.0%
!!! CGGCTGTTTTGAAAGTGTTT+CGG + chr1_2:6381352-6381371 None:intergenic 40.0%
CGAAACACTTTCAAAACAGC+CGG - chr1_2:6381350-6381369 Msa0052200:CDS 40.0%
GAAACACTTTCAAAACAGCC+GGG - chr1_2:6381351-6381370 Msa0052200:CDS 40.0%
GGTATAACATCGAGAATTCC+CGG + chr1_2:6381372-6381391 None:intergenic 40.0%
! GTGTTCTTGTTGTGTGAAGT+TGG + chr1_2:6381407-6381426 None:intergenic 40.0%
! TGACTTTGTTGTCTAGAGTG+AGG + chr1_2:6381468-6381487 None:intergenic 40.0%
TTGGTCCAATACCAAGTAAC+TGG - chr1_2:6381553-6381572 Msa0052200:CDS 40.0%
CCTTTCCAGTTACTTGGTAT+TGG + chr1_2:6381561-6381580 None:intergenic 40.0%
CCAATACCAAGTAACTGGAA+AGG - chr1_2:6381558-6381577 Msa0052200:CDS 40.0%
CATACACCTTTCCAGTTACT+TGG + chr1_2:6381567-6381586 None:intergenic 40.0%
! TGGAAAGGTGTATGTGAAAC+CGG - chr1_2:6381573-6381592 Msa0052200:CDS 40.0%
CACTGCAACAGAAAACTCAT+AGG - chr1_2:6381615-6381634 Msa0052200:CDS 40.0%
ACAGAAAACTCATAGGTGCA+AGG - chr1_2:6381622-6381641 Msa0052200:CDS 40.0%
AGATCAGCTAGAGATGATGA+TGG - chr1_2:6381702-6381721 Msa0052200:CDS 40.0%
! GTAGCAGAAGCTAGCTTATT+TGG - chr1_2:6381765-6381784 Msa0052200:CDS 40.0%
GTTTCATCTTCAGCAGGAAA+TGG - chr1_2:6382014-6382033 Msa0052200:CDS 40.0%
TTTGACAAGCTTTCAGCACT+TGG + chr1_2:6382044-6382063 None:intergenic 40.0%
TGCTGAAAGCTTGTCAAATG+TGG - chr1_2:6382046-6382065 Msa0052200:CDS 40.0%
AAAATCGCGGTCAATTGTTC+CGG + chr1_2:6382096-6382115 None:intergenic 40.0%
TTGCTACCACTTGTTTATGC+AGG - chr1_2:6382194-6382213 Msa0052200:CDS 40.0%
AAACCGGATTTAATAGCTCC+CGG - chr1_2:6382599-6382618 Msa0052200:CDS 40.0%
ACCGGCTAAAATGTTTACAC+CGG + chr1_2:6382621-6382640 None:intergenic 40.0%
!! GTGTAAACATTTTAGCCGGT+TGG - chr1_2:6382621-6382640 Msa0052200:CDS 40.0%
GCATACACCTCGTACAAAAA+CGG - chr1_2:6382815-6382834 Msa0052200:CDS 40.0%
!! TGTTTGTCCGTTTTTGTACG+AGG + chr1_2:6382825-6382844 None:intergenic 40.0%
CAATTGTAGATGTTGCAACC+GGG - chr1_2:6382843-6382862 Msa0052200:CDS 40.0%
!! ACTCCCTTTGATTTTGGATC+TGG - chr1_2:6382875-6382894 Msa0052200:CDS 40.0%
GTGACCAGATCCAAAATCAA+AGG + chr1_2:6382882-6382901 None:intergenic 40.0%
CATAAACAAGACCAGGATCA+AGG + chr1_2:6382922-6382941 None:intergenic 40.0%
ATCAACGTCGATGACTATCT+TGG - chr1_2:6382944-6382963 Msa0052200:CDS 40.0%
GAGAGTTTACTTGTGATGCA+AGG - chr1_2:6383020-6383039 Msa0052200:CDS 40.0%
GTGATGCAAGGAAGAAATAC+AGG - chr1_2:6383032-6383051 Msa0052200:CDS 40.0%
!!! TCCTTCTTTTGCTGTTGCTT+TGG - chr1_2:6383072-6383091 Msa0052200:CDS 40.0%
TCCAAAGCAACAGCAAAAGA+AGG + chr1_2:6383076-6383095 None:intergenic 40.0%
!! TGTTGCTTTGGAAACTGCTT+CGG - chr1_2:6383084-6383103 Msa0052200:CDS 40.0%
CAATAGGGTTCTTACAAACG+TGG - chr1_2:6383147-6383166 Msa0052200:CDS 40.0%
GGGAACTTATAATGCTTCAG+TGG - chr1_2:6383177-6383196 Msa0052200:CDS 40.0%
! TAAGGAGGTGTATGAGAAGA+AGG - chr1_2:6383261-6383280 Msa0052200:CDS 40.0%
CCAAAACTCTTAGTTCCAGA+AGG + chr1_2:6383319-6383338 None:intergenic 40.0%
!!! CCTTCTGGAACTAAGAGTTT+TGG - chr1_2:6383316-6383335 Msa0052200:CDS 40.0%
! GGCTATTTGGAATGGAATGA+TGG - chr1_2:6383337-6383356 Msa0052200:CDS 40.0%
! ATGGAATGATGGGAAGCATA+AGG - chr1_2:6383348-6383367 Msa0052200:CDS 40.0%
! AATGATGGGAAGCATAAGGT+TGG - chr1_2:6383352-6383371 Msa0052200:CDS 40.0%
! ATGATGGGAAGCATAAGGTT+GGG - chr1_2:6383353-6383372 Msa0052200:CDS 40.0%
GGAGTCCAATTGCATTTAGT+TGG - chr1_2:6383374-6383393 Msa0052200:CDS 40.0%
!! ATCAGTGAATGTTTCTGGCA+TGG + chr1_2:6381217-6381236 None:intergenic 40.0%
AGGTGATCAGTGAATGTTTC+TGG + chr1_2:6381222-6381241 None:intergenic 40.0%
CATTCACTGATCACCTTAAC+TGG - chr1_2:6381226-6381245 Msa0052200:CDS 40.0%
!! TTGAAAGTGTTTCGGCTTCT+TGG + chr1_2:6381344-6381363 None:intergenic 40.0%
!!! CGGCTGTTTTGAAAGTGTTT+CGG + chr1_2:6381352-6381371 None:intergenic 40.0%
CGAAACACTTTCAAAACAGC+CGG - chr1_2:6381350-6381369 Msa0052200:CDS 40.0%
GAAACACTTTCAAAACAGCC+GGG - chr1_2:6381351-6381370 Msa0052200:CDS 40.0%
GGTATAACATCGAGAATTCC+CGG + chr1_2:6381372-6381391 None:intergenic 40.0%
! GTGTTCTTGTTGTGTGAAGT+TGG + chr1_2:6381407-6381426 None:intergenic 40.0%
! TGACTTTGTTGTCTAGAGTG+AGG + chr1_2:6381468-6381487 None:intergenic 40.0%
TTGGTCCAATACCAAGTAAC+TGG - chr1_2:6381553-6381572 Msa0052200:CDS 40.0%
CCTTTCCAGTTACTTGGTAT+TGG + chr1_2:6381561-6381580 None:intergenic 40.0%
CCAATACCAAGTAACTGGAA+AGG - chr1_2:6381558-6381577 Msa0052200:CDS 40.0%
CATACACCTTTCCAGTTACT+TGG + chr1_2:6381567-6381586 None:intergenic 40.0%
! TGGAAAGGTGTATGTGAAAC+CGG - chr1_2:6381573-6381592 Msa0052200:CDS 40.0%
CACTGCAACAGAAAACTCAT+AGG - chr1_2:6381615-6381634 Msa0052200:CDS 40.0%
ACAGAAAACTCATAGGTGCA+AGG - chr1_2:6381622-6381641 Msa0052200:CDS 40.0%
AGATCAGCTAGAGATGATGA+TGG - chr1_2:6381702-6381721 Msa0052200:CDS 40.0%
! GTAGCAGAAGCTAGCTTATT+TGG - chr1_2:6381765-6381784 Msa0052200:CDS 40.0%
GTTTCATCTTCAGCAGGAAA+TGG - chr1_2:6382014-6382033 Msa0052200:CDS 40.0%
TTTGACAAGCTTTCAGCACT+TGG + chr1_2:6382044-6382063 None:intergenic 40.0%
TGCTGAAAGCTTGTCAAATG+TGG - chr1_2:6382046-6382065 Msa0052200:CDS 40.0%
AAAATCGCGGTCAATTGTTC+CGG + chr1_2:6382096-6382115 None:intergenic 40.0%
TTGCTACCACTTGTTTATGC+AGG - chr1_2:6382194-6382213 Msa0052200:CDS 40.0%
AAACCGGATTTAATAGCTCC+CGG - chr1_2:6382599-6382618 Msa0052200:CDS 40.0%
ACCGGCTAAAATGTTTACAC+CGG + chr1_2:6382621-6382640 None:intergenic 40.0%
!! GTGTAAACATTTTAGCCGGT+TGG - chr1_2:6382621-6382640 Msa0052200:CDS 40.0%
GCATACACCTCGTACAAAAA+CGG - chr1_2:6382815-6382834 Msa0052200:CDS 40.0%
!! TGTTTGTCCGTTTTTGTACG+AGG + chr1_2:6382825-6382844 None:intergenic 40.0%
CAATTGTAGATGTTGCAACC+GGG - chr1_2:6382843-6382862 Msa0052200:CDS 40.0%
!! ACTCCCTTTGATTTTGGATC+TGG - chr1_2:6382875-6382894 Msa0052200:CDS 40.0%
GTGACCAGATCCAAAATCAA+AGG + chr1_2:6382882-6382901 None:intergenic 40.0%
CATAAACAAGACCAGGATCA+AGG + chr1_2:6382922-6382941 None:intergenic 40.0%
ATCAACGTCGATGACTATCT+TGG - chr1_2:6382944-6382963 Msa0052200:CDS 40.0%
GAGAGTTTACTTGTGATGCA+AGG - chr1_2:6383020-6383039 Msa0052200:CDS 40.0%
GTGATGCAAGGAAGAAATAC+AGG - chr1_2:6383032-6383051 Msa0052200:CDS 40.0%
!!! TCCTTCTTTTGCTGTTGCTT+TGG - chr1_2:6383072-6383091 Msa0052200:CDS 40.0%
TCCAAAGCAACAGCAAAAGA+AGG + chr1_2:6383076-6383095 None:intergenic 40.0%
!! TGTTGCTTTGGAAACTGCTT+CGG - chr1_2:6383084-6383103 Msa0052200:CDS 40.0%
CAATAGGGTTCTTACAAACG+TGG - chr1_2:6383147-6383166 Msa0052200:CDS 40.0%
GGGAACTTATAATGCTTCAG+TGG - chr1_2:6383177-6383196 Msa0052200:CDS 40.0%
! TAAGGAGGTGTATGAGAAGA+AGG - chr1_2:6383261-6383280 Msa0052200:CDS 40.0%
CCAAAACTCTTAGTTCCAGA+AGG + chr1_2:6383319-6383338 None:intergenic 40.0%
!!! CCTTCTGGAACTAAGAGTTT+TGG - chr1_2:6383316-6383335 Msa0052200:CDS 40.0%
! GGCTATTTGGAATGGAATGA+TGG - chr1_2:6383337-6383356 Msa0052200:CDS 40.0%
! ATGGAATGATGGGAAGCATA+AGG - chr1_2:6383348-6383367 Msa0052200:CDS 40.0%
! AATGATGGGAAGCATAAGGT+TGG - chr1_2:6383352-6383371 Msa0052200:CDS 40.0%
! ATGATGGGAAGCATAAGGTT+GGG - chr1_2:6383353-6383372 Msa0052200:CDS 40.0%
GGAGTCCAATTGCATTTAGT+TGG - chr1_2:6383374-6383393 Msa0052200:CDS 40.0%
!! AGTGAATGTTTCTGGCATGG+TGG + chr1_2:6381214-6381233 None:intergenic 45.0%
ACAAGAACACCACAGTTCCT+TGG - chr1_2:6381417-6381436 Msa0052200:CDS 45.0%
TTTGGCAAACCAAGGAACTG+TGG + chr1_2:6381429-6381448 None:intergenic 45.0%
AGCTTAGATGACACAGGACT+TGG - chr1_2:6381534-6381553 Msa0052200:CDS 45.0%
! AAAGGGTATGAAGCAGCACT+TGG - chr1_2:6381654-6381673 Msa0052200:CDS 45.0%
!! GCTAGAGATGATGATGGACA+TGG - chr1_2:6381708-6381727 Msa0052200:CDS 45.0%
CACACATTAACAACAGCAGC+AGG - chr1_2:6381735-6381754 Msa0052200:CDS 45.0%
TTAGCTTCTGGTACAGCAAG+AGG - chr1_2:6381789-6381808 Msa0052200:CDS 45.0%
!! TACAAAGTGTGCTGGCTTAG+CGG - chr1_2:6381840-6381859 Msa0052200:CDS 45.0%
ATCTTATCGATGTCCATCGG+TGG - chr1_2:6381921-6381940 Msa0052200:CDS 45.0%
ATCCATTAAGCTACCACCGA+TGG + chr1_2:6381937-6381956 None:intergenic 45.0%
GCTTTCACAGCAATGTCTCA+TGG - chr1_2:6381984-6382003 Msa0052200:CDS 45.0%
TCATCTTCAGCAGGAAATGG+TGG - chr1_2:6382017-6382036 Msa0052200:CDS 45.0%
ACTGGTGCATCACTTTACAG+TGG - chr1_2:6382152-6382171 Msa0052200:CDS 45.0%
ACAAGTTCAACCTTCACCAG+TGG - chr1_2:6382526-6382545 Msa0052200:CDS 45.0%
GTAGCAGCATTCAGTTCAAG+AGG - chr1_2:6382548-6382567 Msa0052200:CDS 45.0%
ACACCGGGAGCTATTAAATC+CGG + chr1_2:6382605-6382624 None:intergenic 45.0%
CCGGCTAAAATGTTTACACC+GGG + chr1_2:6382620-6382639 None:intergenic 45.0%
!! CCCGGTGTAAACATTTTAGC+CGG - chr1_2:6382617-6382636 Msa0052200:CDS 45.0%
!! AACATTTTAGCCGGTTGGAC+TGG - chr1_2:6382626-6382645 Msa0052200:CDS 45.0%
TTATCAAGAGCTAAGCCGGT+TGG + chr1_2:6382662-6382681 None:intergenic 45.0%
CCTCTTATCAAGAGCTAAGC+CGG + chr1_2:6382666-6382685 None:intergenic 45.0%
!! TTAAAGGTGCTTACCCCGAA+TGG - chr1_2:6382756-6382775 Msa0052200:CDS 45.0%
TTTGTACGAGGTGTATGCTG+TGG + chr1_2:6382813-6382832 None:intergenic 45.0%
CCAAAATCAAAGGGAGTAGC+TGG + chr1_2:6382872-6382891 None:intergenic 45.0%
!! CCAGCTACTCCCTTTGATTT+TGG - chr1_2:6382869-6382888 Msa0052200:CDS 45.0%
! TGATTTTGGATCTGGTCACG+TGG - chr1_2:6382883-6382902 Msa0052200:CDS 45.0%
!! ATCAGATCAAACTTGCTGCG+AGG - chr1_2:6382996-6383015 Msa0052200:CDS 45.0%
!! GTTGCTTTGGAAACTGCTTC+GGG - chr1_2:6383085-6383104 Msa0052200:CDS 45.0%
TTGGAAACTGCTTCGGGAAT+TGG - chr1_2:6383091-6383110 Msa0052200:CDS 45.0%
TCTTACAAACGTGGGAACTC+CGG - chr1_2:6383156-6383175 Msa0052200:CDS 45.0%
!! TGCTTCAGTGGTGTTGTCAT+CGG - chr1_2:6383189-6383208 Msa0052200:CDS 45.0%
ATTTGTGGCTCAATGCCTTC+TGG - chr1_2:6383301-6383320 Msa0052200:CDS 45.0%
!! AGTGAATGTTTCTGGCATGG+TGG + chr1_2:6381214-6381233 None:intergenic 45.0%
ACAAGAACACCACAGTTCCT+TGG - chr1_2:6381417-6381436 Msa0052200:CDS 45.0%
TTTGGCAAACCAAGGAACTG+TGG + chr1_2:6381429-6381448 None:intergenic 45.0%
AGCTTAGATGACACAGGACT+TGG - chr1_2:6381534-6381553 Msa0052200:CDS 45.0%
! AAAGGGTATGAAGCAGCACT+TGG - chr1_2:6381654-6381673 Msa0052200:CDS 45.0%
!! GCTAGAGATGATGATGGACA+TGG - chr1_2:6381708-6381727 Msa0052200:CDS 45.0%
CACACATTAACAACAGCAGC+AGG - chr1_2:6381735-6381754 Msa0052200:CDS 45.0%
TTAGCTTCTGGTACAGCAAG+AGG - chr1_2:6381789-6381808 Msa0052200:CDS 45.0%
!! TACAAAGTGTGCTGGCTTAG+CGG - chr1_2:6381840-6381859 Msa0052200:CDS 45.0%
ATCTTATCGATGTCCATCGG+TGG - chr1_2:6381921-6381940 Msa0052200:CDS 45.0%
ATCCATTAAGCTACCACCGA+TGG + chr1_2:6381937-6381956 None:intergenic 45.0%
GCTTTCACAGCAATGTCTCA+TGG - chr1_2:6381984-6382003 Msa0052200:CDS 45.0%
TCATCTTCAGCAGGAAATGG+TGG - chr1_2:6382017-6382036 Msa0052200:CDS 45.0%
ACTGGTGCATCACTTTACAG+TGG - chr1_2:6382152-6382171 Msa0052200:CDS 45.0%
ACAAGTTCAACCTTCACCAG+TGG - chr1_2:6382526-6382545 Msa0052200:CDS 45.0%
GTAGCAGCATTCAGTTCAAG+AGG - chr1_2:6382548-6382567 Msa0052200:CDS 45.0%
ACACCGGGAGCTATTAAATC+CGG + chr1_2:6382605-6382624 None:intergenic 45.0%
CCGGCTAAAATGTTTACACC+GGG + chr1_2:6382620-6382639 None:intergenic 45.0%
!! CCCGGTGTAAACATTTTAGC+CGG - chr1_2:6382617-6382636 Msa0052200:CDS 45.0%
!! AACATTTTAGCCGGTTGGAC+TGG - chr1_2:6382626-6382645 Msa0052200:CDS 45.0%
TTATCAAGAGCTAAGCCGGT+TGG + chr1_2:6382662-6382681 None:intergenic 45.0%
CCTCTTATCAAGAGCTAAGC+CGG + chr1_2:6382666-6382685 None:intergenic 45.0%
!! TTAAAGGTGCTTACCCCGAA+TGG - chr1_2:6382756-6382775 Msa0052200:CDS 45.0%
TTTGTACGAGGTGTATGCTG+TGG + chr1_2:6382813-6382832 None:intergenic 45.0%
CCAAAATCAAAGGGAGTAGC+TGG + chr1_2:6382872-6382891 None:intergenic 45.0%
!! CCAGCTACTCCCTTTGATTT+TGG - chr1_2:6382869-6382888 Msa0052200:CDS 45.0%
! TGATTTTGGATCTGGTCACG+TGG - chr1_2:6382883-6382902 Msa0052200:CDS 45.0%
!! ATCAGATCAAACTTGCTGCG+AGG - chr1_2:6382996-6383015 Msa0052200:CDS 45.0%
!! GTTGCTTTGGAAACTGCTTC+GGG - chr1_2:6383085-6383104 Msa0052200:CDS 45.0%
TTGGAAACTGCTTCGGGAAT+TGG - chr1_2:6383091-6383110 Msa0052200:CDS 45.0%
TCTTACAAACGTGGGAACTC+CGG - chr1_2:6383156-6383175 Msa0052200:CDS 45.0%
!! TGCTTCAGTGGTGTTGTCAT+CGG - chr1_2:6383189-6383208 Msa0052200:CDS 45.0%
ATTTGTGGCTCAATGCCTTC+TGG - chr1_2:6383301-6383320 Msa0052200:CDS 45.0%
GCGATGTGTCGAACCAGTTA+AGG + chr1_2:6381242-6381261 None:intergenic 50.0%
TTCTGGTACAGCAAGAGGCA+TGG - chr1_2:6381794-6381813 Msa0052200:CDS 50.0%
TTCACTTCAGACATAGCCGC+TGG - chr1_2:6381867-6381886 Msa0052200:CDS 50.0%
TTCAGACATAGCCGCTGGAA+TGG - chr1_2:6381872-6381891 Msa0052200:CDS 50.0%
GTCCATCGGTGGTAGCTTAA+TGG - chr1_2:6381932-6381951 Msa0052200:CDS 50.0%
GCTTGTCAAATGTGGCACCA+TGG - chr1_2:6382054-6382073 Msa0052200:CDS 50.0%
GCACCATGGATAACAACCGT+TGG - chr1_2:6382068-6382087 Msa0052200:CDS 50.0%
GCACCAACGGTTGTTATCCA+TGG + chr1_2:6382074-6382093 None:intergenic 50.0%
TGGATAACAACCGTTGGTGC+CGG - chr1_2:6382074-6382093 Msa0052200:CDS 50.0%
GTCAATTGTTCCGGCACCAA+CGG + chr1_2:6382087-6382106 None:intergenic 50.0%
TCTTCTACCAGCAGCAGCAT+TGG - chr1_2:6382418-6382437 Msa0052200:CDS 50.0%
CTTCTACCAGCAGCAGCATT+GGG - chr1_2:6382419-6382438 Msa0052200:CDS 50.0%
! TTTTGACCCAATGCTGCTGC+TGG + chr1_2:6382428-6382447 None:intergenic 50.0%
AATGCTGCTACCACTGGTGA+AGG + chr1_2:6382539-6382558 None:intergenic 50.0%
GAACTGAATGCTGCTACCAC+TGG + chr1_2:6382545-6382564 None:intergenic 50.0%
! CCGGCTTAGCTCTTGATAAG+AGG - chr1_2:6382663-6382682 Msa0052200:CDS 50.0%
TATAGCAGCAGGGCTCCATT+CGG + chr1_2:6382774-6382793 None:intergenic 50.0%
AATGGAGCCCTGCTGCTATA+CGG - chr1_2:6382774-6382793 Msa0052200:CDS 50.0%
! AAAGGGAGTAGCTGGTTTCC+CGG + chr1_2:6382864-6382883 None:intergenic 50.0%
GAAACTGCTTCGGGAATTGG+TGG - chr1_2:6383094-6383113 Msa0052200:CDS 50.0%
CTTACAAACGTGGGAACTCC+GGG - chr1_2:6383157-6383176 Msa0052200:CDS 50.0%
!! TTCAGTGGTGTTGTCATCGG+TGG - chr1_2:6383192-6383211 Msa0052200:CDS 50.0%
! GTCATCGGTGGATTCTTCGT+CGG - chr1_2:6383204-6383223 Msa0052200:CDS 50.0%
TTCTTCGTCGGTGAAGGTTG+TGG - chr1_2:6383216-6383235 Msa0052200:CDS 50.0%
GCGATGTGTCGAACCAGTTA+AGG + chr1_2:6381242-6381261 None:intergenic 50.0%
TTCTGGTACAGCAAGAGGCA+TGG - chr1_2:6381794-6381813 Msa0052200:CDS 50.0%
TTCACTTCAGACATAGCCGC+TGG - chr1_2:6381867-6381886 Msa0052200:CDS 50.0%
TTCAGACATAGCCGCTGGAA+TGG - chr1_2:6381872-6381891 Msa0052200:CDS 50.0%
GTCCATCGGTGGTAGCTTAA+TGG - chr1_2:6381932-6381951 Msa0052200:CDS 50.0%
GCTTGTCAAATGTGGCACCA+TGG - chr1_2:6382054-6382073 Msa0052200:CDS 50.0%
GCACCATGGATAACAACCGT+TGG - chr1_2:6382068-6382087 Msa0052200:CDS 50.0%
GCACCAACGGTTGTTATCCA+TGG + chr1_2:6382074-6382093 None:intergenic 50.0%
TGGATAACAACCGTTGGTGC+CGG - chr1_2:6382074-6382093 Msa0052200:CDS 50.0%
GTCAATTGTTCCGGCACCAA+CGG + chr1_2:6382087-6382106 None:intergenic 50.0%
TCTTCTACCAGCAGCAGCAT+TGG - chr1_2:6382418-6382437 Msa0052200:CDS 50.0%
CTTCTACCAGCAGCAGCATT+GGG - chr1_2:6382419-6382438 Msa0052200:CDS 50.0%
! TTTTGACCCAATGCTGCTGC+TGG + chr1_2:6382428-6382447 None:intergenic 50.0%
AATGCTGCTACCACTGGTGA+AGG + chr1_2:6382539-6382558 None:intergenic 50.0%
GAACTGAATGCTGCTACCAC+TGG + chr1_2:6382545-6382564 None:intergenic 50.0%
! CCGGCTTAGCTCTTGATAAG+AGG - chr1_2:6382663-6382682 Msa0052200:CDS 50.0%
TATAGCAGCAGGGCTCCATT+CGG + chr1_2:6382774-6382793 None:intergenic 50.0%
AATGGAGCCCTGCTGCTATA+CGG - chr1_2:6382774-6382793 Msa0052200:CDS 50.0%
! AAAGGGAGTAGCTGGTTTCC+CGG + chr1_2:6382864-6382883 None:intergenic 50.0%
GAAACTGCTTCGGGAATTGG+TGG - chr1_2:6383094-6383113 Msa0052200:CDS 50.0%
CTTACAAACGTGGGAACTCC+GGG - chr1_2:6383157-6383176 Msa0052200:CDS 50.0%
!! TTCAGTGGTGTTGTCATCGG+TGG - chr1_2:6383192-6383211 Msa0052200:CDS 50.0%
! GTCATCGGTGGATTCTTCGT+CGG - chr1_2:6383204-6383223 Msa0052200:CDS 50.0%
TTCTTCGTCGGTGAAGGTTG+TGG - chr1_2:6383216-6383235 Msa0052200:CDS 50.0%
TCGCGGCTTACAAAGTGTGC+TGG - chr1_2:6381832-6381851 Msa0052200:CDS 55.0%
!! TTTAGCCGGTTGGACTGGTG+CGG - chr1_2:6382631-6382650 Msa0052200:CDS 55.0%
ACTCGCGTGAGGACATGACA+TGG + chr1_2:6382720-6382739 None:intergenic 55.0%
ATGTCATGTCCTCACGCGAG+TGG - chr1_2:6382719-6382738 Msa0052200:CDS 55.0%
ATAGCAGCAGGGCTCCATTC+GGG + chr1_2:6382773-6382792 None:intergenic 55.0%
! GTGCTGACCGTATAGCAGCA+GGG + chr1_2:6382784-6382803 None:intergenic 55.0%
!! AGTGCTGACCGTATAGCAGC+AGG + chr1_2:6382785-6382804 None:intergenic 55.0%
CCAGGATCAAGGGCAGATAC+AGG + chr1_2:6382911-6382930 None:intergenic 55.0%
CCTGTATCTGCCCTTGATCC+TGG - chr1_2:6382908-6382927 Msa0052200:CDS 55.0%
ACTGCTTCGGGAATTGGTGG+TGG - chr1_2:6383097-6383116 Msa0052200:CDS 55.0%
! GGTGGATTCTTCGTCGGTGA+AGG - chr1_2:6383210-6383229 Msa0052200:CDS 55.0%
TTCGTCGGTGAAGGTTGTGG+TGG - chr1_2:6383219-6383238 Msa0052200:CDS 55.0%
! GGTGAAGGTTGTGGTGGAAC+CGG - chr1_2:6383225-6383244 Msa0052200:CDS 55.0%
TCGCGGCTTACAAAGTGTGC+TGG - chr1_2:6381832-6381851 Msa0052200:CDS 55.0%
!! TTTAGCCGGTTGGACTGGTG+CGG - chr1_2:6382631-6382650 Msa0052200:CDS 55.0%
ACTCGCGTGAGGACATGACA+TGG + chr1_2:6382720-6382739 None:intergenic 55.0%
ATGTCATGTCCTCACGCGAG+TGG - chr1_2:6382719-6382738 Msa0052200:CDS 55.0%
ATAGCAGCAGGGCTCCATTC+GGG + chr1_2:6382773-6382792 None:intergenic 55.0%
! GTGCTGACCGTATAGCAGCA+GGG + chr1_2:6382784-6382803 None:intergenic 55.0%
!! AGTGCTGACCGTATAGCAGC+AGG + chr1_2:6382785-6382804 None:intergenic 55.0%
CCAGGATCAAGGGCAGATAC+AGG + chr1_2:6382911-6382930 None:intergenic 55.0%
CCTGTATCTGCCCTTGATCC+TGG - chr1_2:6382908-6382927 Msa0052200:CDS 55.0%
ACTGCTTCGGGAATTGGTGG+TGG - chr1_2:6383097-6383116 Msa0052200:CDS 55.0%
! GGTGGATTCTTCGTCGGTGA+AGG - chr1_2:6383210-6383229 Msa0052200:CDS 55.0%
TTCGTCGGTGAAGGTTGTGG+TGG - chr1_2:6383219-6383238 Msa0052200:CDS 55.0%
! GGTGAAGGTTGTGGTGGAAC+CGG - chr1_2:6383225-6383244 Msa0052200:CDS 55.0%
ACCAACCGCACCAGTCCAAC+CGG + chr1_2:6382639-6382658 None:intergenic 60.0%
! ACTGGTGCGGTTGGTCCAAC+CGG - chr1_2:6382644-6382663 Msa0052200:CDS 60.0%
GCAGCTAAACCACTCGCGTG+AGG + chr1_2:6382731-6382750 None:intergenic 60.0%
TAGCAGCAGGGCTCCATTCG+GGG + chr1_2:6382772-6382791 None:intergenic 60.0%
ACCAACCGCACCAGTCCAAC+CGG + chr1_2:6382639-6382658 None:intergenic 60.0%
! ACTGGTGCGGTTGGTCCAAC+CGG - chr1_2:6382644-6382663 Msa0052200:CDS 60.0%
GCAGCTAAACCACTCGCGTG+AGG + chr1_2:6382731-6382750 None:intergenic 60.0%
TAGCAGCAGGGCTCCATTCG+GGG + chr1_2:6382772-6382791 None:intergenic 60.0%
! GGCTACAGAAGCGCGTGTCG+CGG - chr1_2:6381815-6381834 Msa0052200:CDS 65.0%
! GGCTACAGAAGCGCGTGTCG+CGG - chr1_2:6381815-6381834 Msa0052200:CDS 65.0%
!! GCCGGTTGGACTGGTGCGGT+TGG - chr1_2:6382635-6382654 Msa0052200:CDS 70.0%
!! GCCGGTTGGACTGGTGCGGT+TGG - chr1_2:6382635-6382654 Msa0052200:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 6381201 6383402 6381201 ID=Msa0052200;Name=Msa0052200
chr1_2 mRNA 6381201 6383402 6381201 ID=Msa0052200-mRNA-1;Parent=Msa0052200;Name=Msa0052200-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|733
chr1_2 exon 6381201 6383402 6381201 ID=Msa0052200-mRNA-1:exon:2030;Parent=Msa0052200-mRNA-1
chr1_2 CDS 6381201 6383402 6381201 ID=Msa0052200-mRNA-1:cds;Parent=Msa0052200-mRNA-1
Gene Sequence

>Msa0052200

ATGGACAAAACCACCATGCCAGAAACATTCACTGATCACCTTAACTGGTTCGACACATCGCTAAAATCAGTATCAGAAACAGCAGAGATTCTATACACATACAAACACATAGCTCATGGATACTCCACAAGACTAACTAACCAAGAAGCCGAAACACTTTCAAAACAGCCGGGAATTCTCGATGTTATACCTGAACTTAGATACCAACTTCACACAACAAGAACACCACAGTTCCTTGGTTTGCCAAAAACAAACACTCTTTTACCTCACTCTAGACAACAAAGTCAAGTAATTATTGGTATTCTTGACACTGGTATATGGCCAGAGCTAAAAAGCTTAGATGACACAGGACTTGGTCCAATACCAAGTAACTGGAAAGGTGTATGTGAAACCGGTAACAACATGAATTCATCACACTGCAACAGAAAACTCATAGGTGCAAGGTTTTTCTTAAAAGGGTATGAAGCAGCACTTGGTCCAATAGATGAAACAACAGAATCAAGATCAGCTAGAGATGATGATGGACATGGAAGTCACACATTAACAACAGCAGCAGGTTCTGTTGTAGCAGAAGCTAGCTTATTTGGTTTAGCTTCTGGTACAGCAAGAGGCATGGCTACAGAAGCGCGTGTCGCGGCTTACAAAGTGTGCTGGCTTAGCGGTTGTTTCACTTCAGACATAGCCGCTGGAATGGATAAAGCTATAGAAGACGGTGTTAACATCTTATCGATGTCCATCGGTGGTAGCTTAATGGATTACTACAGAGACATCATTGCAATTGGTGCTTTCACAGCAATGTCTCATGGAATTCTAGTTTCATCTTCAGCAGGAAATGGTGGACCAAGTGCTGAAAGCTTGTCAAATGTGGCACCATGGATAACAACCGTTGGTGCCGGAACAATTGACCGCGATTTTCCTAGTTATATAACACTTGGAAATGGAAAAACTTACACTGGTGCATCACTTTACAGTGGAAAGCCTTTAACTGATTCATTGCTACCACTTGTTTATGCAGGTAATGTTAGTGATTCCTCAGTTGGGTATCTTTGTATACCTGATTCTTTAACAAGTTCAAAAGTTATAGGTAAAATTGTGATATGTGAAAGAGGTGGAAACTCAAGAGTTGAAAAGGGTCTTGTTGTAAAAAAAGCTGGTGGAATTGGAATGATTTTGGTAAACAATGAAGCATATGGTGAAGAGTTAATTGCTGATTCTCATCTTCTACCAGCAGCAGCATTGGGTCAAAAATCAAGCACTGTTTTAAAAGACTACGTTTTTACTACGAAAAATCCAAGAGCTAAACTTGTTTTTGGGGGCACACACTTACAAGTTCAACCTTCACCAGTGGTAGCAGCATTCAGTTCAAGAGGACCAAATAGTTTAACACCGAAGATTCTTAAACCGGATTTAATAGCTCCCGGTGTAAACATTTTAGCCGGTTGGACTGGTGCGGTTGGTCCAACCGGCTTAGCTCTTGATAAGAGGCACGTGAATTTCAACATTATATCAGGAACATCCATGTCATGTCCTCACGCGAGTGGTTTAGCTGCTATAGTTAAAGGTGCTTACCCCGAATGGAGCCCTGCTGCTATACGGTCAGCACTAATGACCACAGCATACACCTCGTACAAAAACGGACAAACAATTGTAGATGTTGCAACCGGGAAACCAGCTACTCCCTTTGATTTTGGATCTGGTCACGTGGATCCTGTATCTGCCCTTGATCCTGGTCTTGTTTATGACATCAACGTCGATGACTATCTTGGATTTTTCTGTGCCTTAAACTACACTTCGTATCAGATCAAACTTGCTGCGAGGAGAGAGTTTACTTGTGATGCAAGGAAGAAATACAGGGTTGAAGATTTTAACTATCCTTCTTTTGCTGTTGCTTTGGAAACTGCTTCGGGAATTGGTGGTGGTTCTGATAAACCGATAATTGTTGAATACAATAGGGTTCTTACAAACGTGGGAACTCCGGGAACTTATAATGCTTCAGTGGTGTTGTCATCGGTGGATTCTTCGTCGGTGAAGGTTGTGGTGGAACCGGAGACTATTAGTTTTAAGGAGGTGTATGAGAAGAAGGTTTATAAAGTGAGGTTTATTTGTGGCTCAATGCCTTCTGGAACTAAGAGTTTTGGCTATTTGGAATGGAATGATGGGAAGCATAAGGTTGGGAGTCCAATTGCATTTAGTTGGACTTGA
Protein sequence

>Msa0052200

MDKTTMPETFTDHLNWFDTSLKSVSETAEILYTYKHIAHGYSTRLTNQEAETLSKQPGILDVIPELRYQLHTTRTPQFLGLPKTNTLLPHSRQQSQVIIGILDTGIWPELKSLDDTGLGPIPSNWKGVCETGNNMNSSHCNRKLIGARFFLKGYEAALGPIDETTESRSARDDDGHGSHTLTTAAGSVVAEASLFGLASGTARGMATEARVAAYKVCWLSGCFTSDIAAGMDKAIEDGVNILSMSIGGSLMDYYRDIIAIGAFTAMSHGILVSSSAGNGGPSAESLSNVAPWITTVGAGTIDRDFPSYITLGNGKTYTGASLYSGKPLTDSLLPLVYAGNVSDSSVGYLCIPDSLTSSKVIGKIVICERGGNSRVEKGLVVKKAGGIGMILVNNEAYGEELIADSHLLPAAALGQKSSTVLKDYVFTTKNPRAKLVFGGTHLQVQPSPVVAAFSSRGPNSLTPKILKPDLIAPGVNILAGWTGAVGPTGLALDKRHVNFNIISGTSMSCPHASGLAAIVKGAYPEWSPAAIRSALMTTAYTSYKNGQTIVDVATGKPATPFDFGSGHVDPVSALDPGLVYDINVDDYLGFFCALNYTSYQIKLAARREFTCDARKKYRVEDFNYPSFAVALETASGIGGGSDKPIIVEYNRVLTNVGTPGTYNASVVLSSVDSSSVKVVVEPETISFKEVYEKKVYKVRFICGSMPSGTKSFGYLEWNDGKHKVGSPIAFSWT*