AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1080280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080280 MtrunA17_Chr7g0265901 93.920 477 21 4 1 470 1 476 0.0 843
Msa1080280 MtrunA17_Chr1g0179151 51.141 526 178 17 1 470 2 504 5.16e-133 393
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080280 AT5G03670.1 37.893 541 236 19 1 469 1 513 1.18e-71 236
Msa1080280 AT5G03670.2 43.229 192 79 9 1 173 1 181 1.39e-30 123

Find 113 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAAGGCTTTGGGCTATT+TGG 0.129747 7_2:+79693383 Msa1080280:CDS
CTATTTCCTGCTTCCGATTC+TGG 0.143562 7_2:-79693436 None:intergenic
AGTAGCTCATGTAAGTATTT+TGG 0.148577 7_2:-79693038 None:intergenic
TAAACCCACATTATATTATT+TGG 0.168834 7_2:-79696171 None:intergenic
TCTAACATGGAATGTATTAT+TGG 0.229248 7_2:+79696109 Msa1080280:three_prime_UTR
AAGAAGATGATGAATGTTTC+TGG 0.233486 7_2:-79693325 None:intergenic
CAGAGGAATTAGCATGTTAA+TGG 0.248136 7_2:+79696024 Msa1080280:CDS
GTCTACTACTACATAATAAA+TGG 0.254280 7_2:-79692731 None:intergenic
GACAGAATAAAATTAAAATT+TGG 0.262186 7_2:-79692675 None:intergenic
GCTTGCAATCTTTAGCATTC+TGG 0.276232 7_2:+79695989 Msa1080280:CDS
GCAAAACGAAAAGGACTTTC+AGG 0.307629 7_2:-79693638 None:intergenic
ATTTGAGAAACTTGCAGAAT+TGG 0.308653 7_2:+79695560 Msa1080280:CDS
AGAAAATGACTTCAAAGAAT+TGG 0.324338 7_2:+79695689 Msa1080280:CDS
AAAATTTGGCAGTAAATTGT+AGG 0.334444 7_2:-79692661 None:intergenic
GGATGAGGATGAAACATATA+TGG 0.353271 7_2:+79695623 Msa1080280:CDS
AGAGGAATTAGCATGTTAAT+GGG 0.362915 7_2:+79696025 Msa1080280:exon
CTAACTAAGTTGTTGTGAAA+TGG 0.368081 7_2:-79692998 None:intergenic
CTAACATGGAATGTATTATT+GGG 0.405525 7_2:+79696110 Msa1080280:three_prime_UTR
GTGGGATTTGCTGTCTGTCA+TGG 0.410641 7_2:-79695740 None:intergenic
TTAGTTAGTTTATGTGATGA+TGG 0.419692 7_2:+79693013 Msa1080280:exon
AGTATCAATCAATTCAAGTC+AGG 0.420527 7_2:+79694336 Msa1080280:CDS
TCTTCTAATATAAAGAATAA+AGG 0.431130 7_2:-79696080 None:intergenic
AGTTGATTCAAATCTGAAGT+TGG 0.435953 7_2:-79692817 None:intergenic
TGTGAGGGAGTTATTGAAGT+TGG 0.436041 7_2:+79693475 Msa1080280:CDS
GTTGATTCAAATCTGAAGTT+GGG 0.437140 7_2:-79692816 None:intergenic
TAACTCCGGGGTGTGGCTGC+CGG 0.441342 7_2:-79693681 None:intergenic
TATTGAAGAGGTTGGAATCA+TGG 0.442336 7_2:+79695853 Msa1080280:CDS
ATTATTATTGTAAAATAATG+AGG 0.446933 7_2:-79692698 None:intergenic
TCAGTTTCTTAAATTCTTGT+GGG 0.447004 7_2:-79695758 None:intergenic
CTTGTACAGTAGGATTCTAT+AGG 0.450502 7_2:-79692611 None:intergenic
TTCTTCTTGAAGCTGCTCTC+AGG 0.452952 7_2:+79693300 Msa1080280:CDS
TTCAAATCTGAAGTTGGGTT+AGG 0.457886 7_2:-79692811 None:intergenic
ATCAGTTTCTTAAATTCTTG+TGG 0.459352 7_2:-79695759 None:intergenic
ATGTAGTTGTTGAGAAGAAA+TGG 0.459717 7_2:-79693077 None:intergenic
TGAAGCTGTGTATCTGTCAA+TGG 0.460059 7_2:+79695716 Msa1080280:CDS
AGCTAGGATATTGAAGAGGT+TGG 0.467698 7_2:+79695845 Msa1080280:CDS
AGCAGATAAGGAACATGGCT+GGG 0.477023 7_2:+79695958 Msa1080280:CDS
GGGGTGTGGCTGCCGGAGCA+AGG 0.478890 7_2:-79693674 None:intergenic
AGAAGAGGATTTCTCTATAG+AGG 0.482598 7_2:+79695911 Msa1080280:CDS
CGACTCGGCGACGCTAACTC+CGG 0.495649 7_2:-79693695 None:intergenic
ACAGTAGGATTCTATAGGTT+AGG 0.501460 7_2:-79692606 None:intergenic
TAACGCAACGAAACCAGAAT+CGG 0.502950 7_2:+79693423 Msa1080280:CDS
GGAAGAAGAGGAGGAAGATA+AGG 0.504402 7_2:+79694359 Msa1080280:CDS
CAGGAAAAGCATGTTGGTGA+TGG 0.505950 7_2:-79693619 None:intergenic
GTTTGAAGAGCAAAACGAAA+AGG 0.508198 7_2:-79693647 None:intergenic
TAATTAAGCAAATGAGACTT+GGG 0.509466 7_2:-79696235 None:intergenic
TGCAATCTTTAGCATTCTGG+TGG 0.515937 7_2:+79695992 Msa1080280:CDS
ACGAAACCAGAATCGGAAGC+AGG 0.517439 7_2:+79693430 Msa1080280:CDS
GAGCAGATAAGGAACATGGC+TGG 0.519541 7_2:+79695957 Msa1080280:CDS
TTAATTAAGCAAATGAGACT+TGG 0.522926 7_2:-79696236 None:intergenic
ATGGAATGTATTATTGGGAT+AGG 0.523355 7_2:+79696115 Msa1080280:three_prime_UTR
GAAGTTGGATTCTTCTGTGA+AGG 0.523721 7_2:+79693490 Msa1080280:CDS
AGAACTTGAGAAAAGAATGC+TGG 0.525436 7_2:+79695590 Msa1080280:CDS
TACTTTCAGTCTTGTACAGT+AGG 0.531514 7_2:-79692621 None:intergenic
GGGGAGAGATGAGATGGGAT+GGG 0.539286 7_2:-79692779 None:intergenic
GGTGGGTCTAAAACACAGAC+TGG 0.539386 7_2:-79694393 None:intergenic
AGTGTTGCTGTTCGAGAAGA+GGG 0.539964 7_2:-79693278 None:intergenic
AGTGACCAAATAATATAATG+TGG 0.540524 7_2:+79696166 Msa1080280:three_prime_UTR
GCTGGATCAAGAAGAGGATG+AGG 0.543983 7_2:+79695608 Msa1080280:CDS
ATAGCGACGTGGTGATAGCT+AGG 0.544170 7_2:+79695829 Msa1080280:CDS
GCGACGCTAACTCCGGGGTG+TGG 0.547073 7_2:-79693688 None:intergenic
TTAAATGGGAGAGAATTTGA+AGG 0.549297 7_2:-79692904 None:intergenic
GAGGATTTCTCTATAGAGGA+TGG 0.553770 7_2:+79695915 Msa1080280:CDS
ATTCAAGTCAGGGGAAGAAG+AGG 0.558222 7_2:+79694347 Msa1080280:CDS
TCATCATCATCCTCGAATGG+TGG 0.561023 7_2:-79694411 None:intergenic
GAGGAATTAGCATGTTAATG+GGG 0.562269 7_2:+79696026 Msa1080280:exon
GTTGGAATCATGGAAAGAAG+TGG 0.563148 7_2:+79695863 Msa1080280:CDS
GGATGAAACATATATGGAAG+AGG 0.564977 7_2:+79695629 Msa1080280:CDS
CATATAAACGATGATGAAGA+TGG 0.565217 7_2:+79694438 Msa1080280:CDS
GACTTTCAGGAAAAGCATGT+TGG 0.568731 7_2:-79693625 None:intergenic
CATCATCATCCTCGAATGGT+GGG 0.573296 7_2:-79694410 None:intergenic
TTATTATTGTAAAATAATGA+GGG 0.577521 7_2:-79692697 None:intergenic
GTATCAATCAATTCAAGTCA+GGG 0.578564 7_2:+79694337 Msa1080280:CDS
AAGTGTTGCTGTTCGAGAAG+AGG 0.579304 7_2:-79693279 None:intergenic
GATTTCTCTATAGAGGATGG+AGG 0.589468 7_2:+79695918 Msa1080280:CDS
AATTGATATGATGATAGAAG+AGG 0.596171 7_2:+79695896 Msa1080280:CDS
AAGAATGCTGGATCAAGAAG+AGG 0.597514 7_2:+79695602 Msa1080280:CDS
CAAGTCAGGGGAAGAAGAGG+AGG 0.599409 7_2:+79694350 Msa1080280:CDS
CATATAGAAACTTCAAGTAG+TGG 0.602899 7_2:+79693557 Msa1080280:CDS
GTGACCAAATAATATAATGT+GGG 0.603907 7_2:+79696167 Msa1080280:three_prime_UTR
TACAAGACTGAAAGTAGGAA+AGG 0.604462 7_2:+79692628 Msa1080280:five_prime_UTR
CTTCAAACAAGTCCTTGCTC+CGG 0.604522 7_2:+79693662 Msa1080280:CDS
CTCATGTTTGTAGCTAGATG+TGG 0.606774 7_2:+79696206 Msa1080280:three_prime_UTR
TTGCTCCGGCAGCCACACCC+CGG 0.609299 7_2:+79693676 Msa1080280:CDS
ACCTCAGTTATGTTTCGACT+CGG 0.610662 7_2:-79693710 None:intergenic
AGAGGATGATGTTGAAGATG+AGG 0.613307 7_2:+79695647 Msa1080280:CDS
GCAGATAAGGAACATGGCTG+GGG 0.618512 7_2:+79695959 Msa1080280:CDS
GGATTCTATAGGTTAGGCGG+AGG 0.628968 7_2:-79692600 None:intergenic
ACTTCATCATCATCCTCGAA+TGG 0.634270 7_2:-79694414 None:intergenic
TAGAAGAGTATAGTCTAACA+TGG 0.635242 7_2:+79696096 Msa1080280:three_prime_UTR
ATAATGTGGGTTTATGTACA+TGG 0.637836 7_2:+79696180 Msa1080280:three_prime_UTR
TGCTGAGCAGATAAGGAACA+TGG 0.637996 7_2:+79695953 Msa1080280:CDS
TACTGTACAAGACTGAAAGT+AGG 0.639842 7_2:+79692623 Msa1080280:five_prime_UTR
AATTAAGCAAATGAGACTTG+GGG 0.640130 7_2:-79696234 None:intergenic
TCTCTATAGAGGATGGAGGG+TGG 0.640291 7_2:+79695922 Msa1080280:CDS
TATCAATCAATTCAAGTCAG+GGG 0.642576 7_2:+79694338 Msa1080280:CDS
ACTGATATCTGATCTAATCG+TGG 0.648080 7_2:+79695776 Msa1080280:CDS
GAAGTTGGGTTAGGAAACCA+AGG 0.649026 7_2:-79692802 None:intergenic
ATTTCTCTATAGAGGATGGA+GGG 0.649835 7_2:+79695919 Msa1080280:CDS
GAATGAATATGTGTCTGTGA+GGG 0.651219 7_2:+79693460 Msa1080280:CDS
GTAGGATTCTATAGGTTAGG+CGG 0.651239 7_2:-79692603 None:intergenic
TGATAGCTAGGATATTGAAG+AGG 0.656936 7_2:+79695841 Msa1080280:CDS
AGGAATTAGCATGTTAATGG+GGG 0.657803 7_2:+79696027 Msa1080280:exon
CTGTGACATACTCTGAACAA+TGG 0.660476 7_2:-79694490 None:intergenic
TTGGGTTAGGAAACCAAGGG+GGG 0.667246 7_2:-79692798 None:intergenic
AAGTTGGGTTAGGAAACCAA+GGG 0.677084 7_2:-79692801 None:intergenic
GTTGGGTTAGGAAACCAAGG+GGG 0.680940 7_2:-79692799 None:intergenic
GAGATGGGATGGGAGTGAAG+TGG 0.693403 7_2:-79692769 None:intergenic
AGAATGAATATGTGTCTGTG+AGG 0.718238 7_2:+79693459 Msa1080280:CDS
GGGGAAGTTAGTTCAAACAG+TGG 0.724917 7_2:-79693245 None:intergenic
TTCTTTAGAAGATAGCGACG+TGG 0.740114 7_2:+79695818 Msa1080280:CDS
GCCGAGTCGAAACATAACTG+AGG 0.752254 7_2:+79693709 Msa1080280:CDS
AGTTGGGTTAGGAAACCAAG+GGG 0.772580 7_2:-79692800 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTTTTTTTTTTATTT+TGG + chr7_2:79693759-79693778 Msa1080280:intron 0.0%
!! TTATTATTGTAAAATAATGA+GGG - chr7_2:79692700-79692719 None:intergenic 10.0%
!! ATTATTATTGTAAAATAATG+AGG - chr7_2:79692701-79692720 None:intergenic 10.0%
!!! TTTTCAATAATAAAAAGTTT+AGG - chr7_2:79694765-79694784 None:intergenic 10.0%
!!! AATTTTATAAAACTTGATAA+GGG - chr7_2:79695066-79695085 None:intergenic 10.0%
!!! AAATTTTATAAAACTTGATA+AGG - chr7_2:79695067-79695086 None:intergenic 10.0%
!! GACAGAATAAAATTAAAATT+TGG - chr7_2:79692678-79692697 None:intergenic 15.0%
!!! TTTGTTTTTTGTTTTGTTTT+TGG - chr7_2:79693369-79693388 None:intergenic 15.0%
!! AAAAACAAAACAAAAAACAA+AGG + chr7_2:79693368-79693387 Msa1080280:CDS 15.0%
!! TCTTCTAATATAAAGAATAA+AGG - chr7_2:79696083-79696102 None:intergenic 15.0%
!!! TGAAGATGTTTTGTTTAAAT+GGG - chr7_2:79692921-79692940 None:intergenic 20.0%
!!! TTGAAGATGTTTTGTTTAAA+TGG - chr7_2:79692922-79692941 None:intergenic 20.0%
!!! TTTTCGTTTTGAATGTTTAA+TGG + chr7_2:79693805-79693824 Msa1080280:intron 20.0%
!!! TGATTGTTTGTTTGTTTTTT+CGG + chr7_2:79693899-79693918 Msa1080280:intron 20.0%
!!! TTATTGACTCATTTTTTGTA+GGG - chr7_2:79694077-79694096 None:intergenic 20.0%
!!! TTTATTGACTCATTTTTTGT+AGG - chr7_2:79694078-79694097 None:intergenic 20.0%
!!! TTATTTAATGAGAGTTTTTG+TGG + chr7_2:79694274-79694293 Msa1080280:intron 20.0%
!!! GTTTTTGTGGAATTTAATAT+AGG + chr7_2:79694287-79694306 Msa1080280:intron 20.0%
!! ATACAATCAACAAATTAGAA+TGG - chr7_2:79694536-79694555 None:intergenic 20.0%
!!! ATTCTAATTTGTTGATTGTA+TGG + chr7_2:79694535-79694554 Msa1080280:intron 20.0%
!!! ACTTTTTTGTTTGTTTTGAT+TGG + chr7_2:79695092-79695111 Msa1080280:intron 20.0%
!! TGTAAAATTACTTGTCTTAA+GGG - chr7_2:79695259-79695278 None:intergenic 20.0%
!! ATGTAAAATTACTTGTCTTA+AGG - chr7_2:79695260-79695279 None:intergenic 20.0%
!!! CAAGTAATTTTACATATGTA+CGG + chr7_2:79695265-79695284 Msa1080280:intron 20.0%
!!! ATTTTGAAACTAAGTATGAA+TGG + chr7_2:79696053-79696072 Msa1080280:three_prime_UTR 20.0%
!! TAAACCCACATTATATTATT+TGG - chr7_2:79696174-79696193 None:intergenic 20.0%
! AAAATTTGGCAGTAAATTGT+AGG - chr7_2:79692664-79692683 None:intergenic 25.0%
! GTCTACTACTACATAATAAA+TGG - chr7_2:79692734-79692753 None:intergenic 25.0%
!! TTTTGTATTGTTAGTTAGAG+TGG - chr7_2:79692858-79692877 None:intergenic 25.0%
!! TTAGTTAGTTTATGTGATGA+TGG + chr7_2:79693013-79693032 Msa1080280:exon 25.0%
!! GTAAAGTAGTGATTTTCATT+TGG - chr7_2:79693118-79693137 None:intergenic 25.0%
!!! AAGTTTGATTTTGAGTTGAA+TGG - chr7_2:79693155-79693174 None:intergenic 25.0%
! AAAACAAAAAACAAAGGCTT+TGG + chr7_2:79693374-79693393 Msa1080280:CDS 25.0%
! AAACAAAAAACAAAGGCTTT+GGG + chr7_2:79693375-79693394 Msa1080280:CDS 25.0%
! AAGTACAATCATCAAAATTC+TGG - chr7_2:79693840-79693859 None:intergenic 25.0%
! TTGTACAAAAACACATTAAG+AGG + chr7_2:79694588-79694607 Msa1080280:intron 25.0%
! AAAAGTTTAGGTGAATTTGA+TGG - chr7_2:79694753-79694772 None:intergenic 25.0%
! TGAAAAACAAACACATTTAG+TGG + chr7_2:79694779-79694798 Msa1080280:intron 25.0%
! GAAAAACAAACACATTTAGT+GGG + chr7_2:79694780-79694799 Msa1080280:intron 25.0%
! AAAAACAAACACATTTAGTG+GGG + chr7_2:79694781-79694800 Msa1080280:intron 25.0%
!! CTCCTAAAATGAAATTTTGT+GGG - chr7_2:79694985-79695004 None:intergenic 25.0%
!! TCTCCTAAAATGAAATTTTG+TGG - chr7_2:79694986-79695005 None:intergenic 25.0%
! AGATCTTTCAATCAATATGT+TGG + chr7_2:79695019-79695038 Msa1080280:intron 25.0%
! TGACCTAATTAATACTCATT+GGG + chr7_2:79695163-79695182 Msa1080280:intron 25.0%
! TATCCCAATGAGTATTAATT+AGG - chr7_2:79695169-79695188 None:intergenic 25.0%
!! ATTTTGTGGTACCTTAAATT+TGG + chr7_2:79695190-79695209 Msa1080280:intron 25.0%
! ATTCTCAACAACCAAATTTA+AGG - chr7_2:79695204-79695223 None:intergenic 25.0%
!! ATCTAACCAAGATATTTTAC+AGG + chr7_2:79695504-79695523 Msa1080280:intron 25.0%
!!! ATTCTTTTCTCAAGTTCTAA+TGG - chr7_2:79695588-79695607 None:intergenic 25.0%
! AGAAAATGACTTCAAAGAAT+TGG + chr7_2:79695689-79695708 Msa1080280:CDS 25.0%
! TCAGTTTCTTAAATTCTTGT+GGG - chr7_2:79695761-79695780 None:intergenic 25.0%
! ATCAGTTTCTTAAATTCTTG+TGG - chr7_2:79695762-79695781 None:intergenic 25.0%
! AATTGATATGATGATAGAAG+AGG + chr7_2:79695896-79695915 Msa1080280:CDS 25.0%
! TCTAACATGGAATGTATTAT+TGG + chr7_2:79696109-79696128 Msa1080280:three_prime_UTR 25.0%
! CTAACATGGAATGTATTATT+GGG + chr7_2:79696110-79696129 Msa1080280:three_prime_UTR 25.0%
! AGTGACCAAATAATATAATG+TGG + chr7_2:79696166-79696185 Msa1080280:three_prime_UTR 25.0%
! GTGACCAAATAATATAATGT+GGG + chr7_2:79696167-79696186 Msa1080280:three_prime_UTR 25.0%
! TAATTAAGCAAATGAGACTT+GGG - chr7_2:79696238-79696257 None:intergenic 25.0%
! TTAATTAAGCAAATGAGACT+TGG - chr7_2:79696239-79696258 None:intergenic 25.0%
! GTTGATTCAAATCTGAAGTT+GGG - chr7_2:79692819-79692838 None:intergenic 30.0%
! AGTTGATTCAAATCTGAAGT+TGG - chr7_2:79692820-79692839 None:intergenic 30.0%
TTAAATGGGAGAGAATTTGA+AGG - chr7_2:79692907-79692926 None:intergenic 30.0%
CTAACTAAGTTGTTGTGAAA+TGG - chr7_2:79693001-79693020 None:intergenic 30.0%
! AGTAGCTCATGTAAGTATTT+TGG - chr7_2:79693041-79693060 None:intergenic 30.0%
ATGTAGTTGTTGAGAAGAAA+TGG - chr7_2:79693080-79693099 None:intergenic 30.0%
!!! TTTTTTGAAGTCAGGTGTTT+CGG - chr7_2:79693222-79693241 None:intergenic 30.0%
AAGAAGATGATGAATGTTTC+TGG - chr7_2:79693328-79693347 None:intergenic 30.0%
TTCTCAGAAGAAAAACAACT+TGG + chr7_2:79693532-79693551 Msa1080280:CDS 30.0%
CATATAGAAACTTCAAGTAG+TGG + chr7_2:79693557-79693576 Msa1080280:CDS 30.0%
TTTGTAGCAAATGAAACATG+TGG - chr7_2:79694003-79694022 None:intergenic 30.0%
AGTATCAATCAATTCAAGTC+AGG + chr7_2:79694336-79694355 Msa1080280:CDS 30.0%
GTATCAATCAATTCAAGTCA+GGG + chr7_2:79694337-79694356 Msa1080280:CDS 30.0%
TATCAATCAATTCAAGTCAG+GGG + chr7_2:79694338-79694357 Msa1080280:CDS 30.0%
CATATAAACGATGATGAAGA+TGG + chr7_2:79694438-79694457 Msa1080280:CDS 30.0%
!!! GTTGATTTTGATTTAGAGAG+CGG + chr7_2:79694462-79694481 Msa1080280:CDS 30.0%
ATTCAACTCAAATCCTACAA+GGG + chr7_2:79694634-79694653 Msa1080280:intron 30.0%
TTATATATCACCTATCAACG+AGG - chr7_2:79694671-79694690 None:intergenic 30.0%
TGTAGTTGTAAACAAAGAGT+AGG - chr7_2:79694930-79694949 None:intergenic 30.0%
! GACCCACAAAATTTCATTTT+AGG + chr7_2:79694980-79694999 Msa1080280:intron 30.0%
!!! TGTTTTGATTGGCAAATTGT+AGG + chr7_2:79695103-79695122 Msa1080280:intron 30.0%
! TAGGATGTTGGTAAATTAGT+TGG + chr7_2:79695122-79695141 Msa1080280:intron 30.0%
GTGACCTAATTAATACTCAT+TGG + chr7_2:79695162-79695181 Msa1080280:intron 30.0%
! ACTCATTGGGATAAATTTTG+TGG + chr7_2:79695176-79695195 Msa1080280:intron 30.0%
TATGGTACATGTAGCATTAT+AGG - chr7_2:79695236-79695255 None:intergenic 30.0%
AATTACTTGTCTTAAGGGTA+TGG - chr7_2:79695254-79695273 None:intergenic 30.0%
GAATAGAACAGTAAACTGAT+TGG - chr7_2:79695296-79695315 None:intergenic 30.0%
ATTTGAGAAACTTGCAGAAT+TGG + chr7_2:79695560-79695579 Msa1080280:CDS 30.0%
AGAGGAATTAGCATGTTAAT+GGG + chr7_2:79696025-79696044 Msa1080280:exon 30.0%
! TAGAAGAGTATAGTCTAACA+TGG + chr7_2:79696096-79696115 Msa1080280:three_prime_UTR 30.0%
ATGGAATGTATTATTGGGAT+AGG + chr7_2:79696115-79696134 Msa1080280:three_prime_UTR 30.0%
ATAATGTGGGTTTATGTACA+TGG + chr7_2:79696180-79696199 Msa1080280:three_prime_UTR 30.0%
AATTAAGCAAATGAGACTTG+GGG - chr7_2:79696237-79696256 None:intergenic 30.0%
ACAGTAGGATTCTATAGGTT+AGG - chr7_2:79692609-79692628 None:intergenic 35.0%
CTTGTACAGTAGGATTCTAT+AGG - chr7_2:79692614-79692633 None:intergenic 35.0%
! TACTTTCAGTCTTGTACAGT+AGG - chr7_2:79692624-79692643 None:intergenic 35.0%
TACTGTACAAGACTGAAAGT+AGG + chr7_2:79692623-79692642 Msa1080280:five_prime_UTR 35.0%
TACAAGACTGAAAGTAGGAA+AGG + chr7_2:79692628-79692647 Msa1080280:five_prime_UTR 35.0%
! TTCAAATCTGAAGTTGGGTT+AGG - chr7_2:79692814-79692833 None:intergenic 35.0%
!!! TTTTTGAAGTCAGGTGTTTC+GGG - chr7_2:79693221-79693240 None:intergenic 35.0%
!!! AGTGGTGATTTTTTGAAGTC+AGG - chr7_2:79693230-79693249 None:intergenic 35.0%
AGAATGAATATGTGTCTGTG+AGG + chr7_2:79693459-79693478 Msa1080280:CDS 35.0%
GAATGAATATGTGTCTGTGA+GGG + chr7_2:79693460-79693479 Msa1080280:CDS 35.0%
! GAAGGTACGTAGAGAAAAAA+TGG + chr7_2:79693508-79693527 Msa1080280:CDS 35.0%
GTTTGAAGAGCAAAACGAAA+AGG - chr7_2:79693650-79693669 None:intergenic 35.0%
GATTCAACTCAAATCCTACA+AGG + chr7_2:79694633-79694652 Msa1080280:intron 35.0%
ATTGGCAAATTGTAGGATGT+TGG + chr7_2:79695110-79695129 Msa1080280:intron 35.0%
CATACTTTCACTCGACAATA+TGG + chr7_2:79695325-79695344 Msa1080280:intron 35.0%
CTTGCTCCTGTAAAATATCT+TGG - chr7_2:79695513-79695532 None:intergenic 35.0%
! CAAGATATTTTACAGGAGCA+AGG + chr7_2:79695511-79695530 Msa1080280:intron 35.0%
AGAACTTGAGAAAAGAATGC+TGG + chr7_2:79695590-79695609 Msa1080280:CDS 35.0%
GGATGAGGATGAAACATATA+TGG + chr7_2:79695623-79695642 Msa1080280:CDS 35.0%
GGATGAAACATATATGGAAG+AGG + chr7_2:79695629-79695648 Msa1080280:CDS 35.0%
ACTGATATCTGATCTAATCG+TGG + chr7_2:79695776-79695795 Msa1080280:CDS 35.0%
TGATAGCTAGGATATTGAAG+AGG + chr7_2:79695841-79695860 Msa1080280:CDS 35.0%
TATTGAAGAGGTTGGAATCA+TGG + chr7_2:79695853-79695872 Msa1080280:CDS 35.0%
AGAAGAGGATTTCTCTATAG+AGG + chr7_2:79695911-79695930 Msa1080280:CDS 35.0%
ATTTCTCTATAGAGGATGGA+GGG + chr7_2:79695919-79695938 Msa1080280:CDS 35.0%
AGAAAAATGCTGAGCAGATA+AGG + chr7_2:79695946-79695965 Msa1080280:CDS 35.0%
CAGAGGAATTAGCATGTTAA+TGG + chr7_2:79696024-79696043 Msa1080280:CDS 35.0%
GAGGAATTAGCATGTTAATG+GGG + chr7_2:79696026-79696045 Msa1080280:exon 35.0%
AGGAATTAGCATGTTAATGG+GGG + chr7_2:79696027-79696046 Msa1080280:exon 35.0%
GTAGGATTCTATAGGTTAGG+CGG - chr7_2:79692606-79692625 None:intergenic 40.0%
! AAGTTGGGTTAGGAAACCAA+GGG - chr7_2:79692804-79692823 None:intergenic 40.0%
! AGAAGAGGGACTTTTAACAG+GGG - chr7_2:79693267-79693286 None:intergenic 40.0%
! GAGAAGAGGGACTTTTAACA+GGG - chr7_2:79693268-79693287 None:intergenic 40.0%
!! AACAAAGGCTTTGGGCTATT+TGG + chr7_2:79693383-79693402 Msa1080280:CDS 40.0%
TAACGCAACGAAACCAGAAT+CGG + chr7_2:79693423-79693442 Msa1080280:CDS 40.0%
TGTGAGGGAGTTATTGAAGT+TGG + chr7_2:79693475-79693494 Msa1080280:CDS 40.0%
GAAGTTGGATTCTTCTGTGA+AGG + chr7_2:79693490-79693509 Msa1080280:CDS 40.0%
! GACTTTCAGGAAAAGCATGT+TGG - chr7_2:79693628-79693647 None:intergenic 40.0%
GCAAAACGAAAAGGACTTTC+AGG - chr7_2:79693641-79693660 None:intergenic 40.0%
ACCTCAGTTATGTTTCGACT+CGG - chr7_2:79693713-79693732 None:intergenic 40.0%
CAGAGAGAGAAAGATTTGCA+TGG - chr7_2:79693879-79693898 None:intergenic 40.0%
ACTTCATCATCATCCTCGAA+TGG - chr7_2:79694417-79694436 None:intergenic 40.0%
CTGTGACATACTCTGAACAA+TGG - chr7_2:79694493-79694512 None:intergenic 40.0%
AACACATTAAGAGGCAACCT+TGG + chr7_2:79694597-79694616 Msa1080280:intron 40.0%
GAGTTGAATCCTTACCAACA+AGG - chr7_2:79694623-79694642 None:intergenic 40.0%
!! TGAGACTTTTTCTAACCGTG+AGG + chr7_2:79694718-79694737 Msa1080280:intron 40.0%
ACAGCTGCTCAACATGTAAA+AGG + chr7_2:79694871-79694890 Msa1080280:intron 40.0%
! AAGGCATTTCCCATTCAATG+TGG + chr7_2:79694890-79694909 Msa1080280:intron 40.0%
TTTCCCATTCAATGTGGACT+TGG + chr7_2:79694896-79694915 Msa1080280:intron 40.0%
TAAACAAAGAGTAGGCCACT+AGG - chr7_2:79694922-79694941 None:intergenic 40.0%
AAGAATGCTGGATCAAGAAG+AGG + chr7_2:79695602-79695621 Msa1080280:CDS 40.0%
AGAGGATGATGTTGAAGATG+AGG + chr7_2:79695647-79695666 Msa1080280:CDS 40.0%
TGAAGCTGTGTATCTGTCAA+TGG + chr7_2:79695716-79695735 Msa1080280:CDS 40.0%
! TTCTTTAGAAGATAGCGACG+TGG + chr7_2:79695818-79695837 Msa1080280:CDS 40.0%
AGCTAGGATATTGAAGAGGT+TGG + chr7_2:79695845-79695864 Msa1080280:CDS 40.0%
GTTGGAATCATGGAAAGAAG+TGG + chr7_2:79695863-79695882 Msa1080280:CDS 40.0%
GAGGATTTCTCTATAGAGGA+TGG + chr7_2:79695915-79695934 Msa1080280:CDS 40.0%
GATTTCTCTATAGAGGATGG+AGG + chr7_2:79695918-79695937 Msa1080280:CDS 40.0%
GCTTGCAATCTTTAGCATTC+TGG + chr7_2:79695989-79696008 Msa1080280:CDS 40.0%
TGCAATCTTTAGCATTCTGG+TGG + chr7_2:79695992-79696011 Msa1080280:CDS 40.0%
!! TCTGGTGGATGAATTTTCAG+AGG + chr7_2:79696007-79696026 Msa1080280:CDS 40.0%
CTCATGTTTGTAGCTAGATG+TGG + chr7_2:79696206-79696225 Msa1080280:three_prime_UTR 40.0%
! AGTTGGGTTAGGAAACCAAG+GGG - chr7_2:79692803-79692822 None:intergenic 45.0%
! GAAGTTGGGTTAGGAAACCA+AGG - chr7_2:79692805-79692824 None:intergenic 45.0%
GGGGAAGTTAGTTCAAACAG+TGG - chr7_2:79693248-79693267 None:intergenic 45.0%
! CGAGAAGAGGGACTTTTAAC+AGG - chr7_2:79693269-79693288 None:intergenic 45.0%
! AGTGTTGCTGTTCGAGAAGA+GGG - chr7_2:79693281-79693300 None:intergenic 45.0%
! AAGTGTTGCTGTTCGAGAAG+AGG - chr7_2:79693282-79693301 None:intergenic 45.0%
TTCTTCTTGAAGCTGCTCTC+AGG + chr7_2:79693300-79693319 Msa1080280:CDS 45.0%
CTATTTCCTGCTTCCGATTC+TGG - chr7_2:79693439-79693458 None:intergenic 45.0%
! CAGGAAAAGCATGTTGGTGA+TGG - chr7_2:79693622-79693641 None:intergenic 45.0%
CTTCAAACAAGTCCTTGCTC+CGG + chr7_2:79693662-79693681 Msa1080280:CDS 45.0%
ATTCAAGTCAGGGGAAGAAG+AGG + chr7_2:79694347-79694366 Msa1080280:CDS 45.0%
GGAAGAAGAGGAGGAAGATA+AGG + chr7_2:79694359-79694378 Msa1080280:CDS 45.0%
!! TGTTTTAGACCCACCATTCG+AGG + chr7_2:79694401-79694420 Msa1080280:CDS 45.0%
CATCATCATCCTCGAATGGT+GGG - chr7_2:79694413-79694432 None:intergenic 45.0%
TCATCATCATCCTCGAATGG+TGG - chr7_2:79694414-79694433 None:intergenic 45.0%
AATCCTTACCAACAAGGCCA+AGG - chr7_2:79694617-79694636 None:intergenic 45.0%
AGGCCAAGTCCACATTGAAT+GGG - chr7_2:79694902-79694921 None:intergenic 45.0%
TAGGCCAAGTCCACATTGAA+TGG - chr7_2:79694903-79694922 None:intergenic 45.0%
TGCTGAGCAGATAAGGAACA+TGG + chr7_2:79695953-79695972 Msa1080280:CDS 45.0%
AGCAGATAAGGAACATGGCT+GGG + chr7_2:79695958-79695977 Msa1080280:CDS 45.0%
GGATTCTATAGGTTAGGCGG+AGG - chr7_2:79692603-79692622 None:intergenic 50.0%
! TTGGGTTAGGAAACCAAGGG+GGG - chr7_2:79692801-79692820 None:intergenic 50.0%
! GTTGGGTTAGGAAACCAAGG+GGG - chr7_2:79692802-79692821 None:intergenic 50.0%
ACGAAACCAGAATCGGAAGC+AGG + chr7_2:79693430-79693449 Msa1080280:CDS 50.0%
GCCGAGTCGAAACATAACTG+AGG + chr7_2:79693709-79693728 Msa1080280:CDS 50.0%
! GGTGGGTCTAAAACACAGAC+TGG - chr7_2:79694396-79694415 None:intergenic 50.0%
!! CAACCTTGGCCTTGTTGGTA+AGG + chr7_2:79694611-79694630 Msa1080280:intron 50.0%
CGATGTGAGACCTCGTTGAT+AGG + chr7_2:79694658-79694677 Msa1080280:intron 50.0%
TCAATGTGGACTTGGCCTAG+TGG + chr7_2:79694904-79694923 Msa1080280:intron 50.0%
GCTGGATCAAGAAGAGGATG+AGG + chr7_2:79695608-79695627 Msa1080280:CDS 50.0%
!! GTGGGATTTGCTGTCTGTCA+TGG - chr7_2:79695743-79695762 None:intergenic 50.0%
ATAGCGACGTGGTGATAGCT+AGG + chr7_2:79695829-79695848 Msa1080280:CDS 50.0%
TCTCTATAGAGGATGGAGGG+TGG + chr7_2:79695922-79695941 Msa1080280:CDS 50.0%
GAGCAGATAAGGAACATGGC+TGG + chr7_2:79695957-79695976 Msa1080280:CDS 50.0%
GCAGATAAGGAACATGGCTG+GGG + chr7_2:79695959-79695978 Msa1080280:CDS 50.0%
GAGATGGGATGGGAGTGAAG+TGG - chr7_2:79692772-79692791 None:intergenic 55.0%
GGGGAGAGATGAGATGGGAT+GGG - chr7_2:79692782-79692801 None:intergenic 55.0%
CAAGGGGGGAGAGATGAGAT+GGG - chr7_2:79692787-79692806 None:intergenic 55.0%
CAAGTCAGGGGAAGAAGAGG+AGG + chr7_2:79694350-79694369 Msa1080280:CDS 55.0%
!! AGAGGCAACCTTGGCCTTGT+TGG + chr7_2:79694606-79694625 Msa1080280:intron 55.0%
GGTCTCACATCGACCCTTGT+AGG - chr7_2:79694650-79694669 None:intergenic 55.0%
! TTCTAACCGTGAGGAGCGCA+CGG + chr7_2:79694727-79694746 Msa1080280:intron 55.0%
GGGGGAGAGATGAGATGGGA+TGG - chr7_2:79692783-79692802 None:intergenic 60.0%
CCAAGGGGGGAGAGATGAGA+TGG - chr7_2:79692788-79692807 None:intergenic 60.0%
CCATCTCATCTCTCCCCCCT+TGG + chr7_2:79692785-79692804 Msa1080280:five_prime_UTR 60.0%
TAACTCCGGGGTGTGGCTGC+CGG - chr7_2:79693684-79693703 None:intergenic 65.0%
ACTCGGCGACGCTAACTCCG+GGG - chr7_2:79693696-79693715 None:intergenic 65.0%
GACTCGGCGACGCTAACTCC+GGG - chr7_2:79693697-79693716 None:intergenic 65.0%
! CGACTCGGCGACGCTAACTC+CGG - chr7_2:79693698-79693717 None:intergenic 65.0%
TGATGGCCGTGCGCTCCTCA+CGG - chr7_2:79694736-79694755 None:intergenic 65.0%
TTGCTCCGGCAGCCACACCC+CGG + chr7_2:79693676-79693695 Msa1080280:CDS 70.0%
GCGACGCTAACTCCGGGGTG+TGG - chr7_2:79693691-79693710 None:intergenic 70.0%
GGGGTGTGGCTGCCGGAGCA+AGG - chr7_2:79693677-79693696 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 79692590 79696288 79692590 ID=Msa1080280;Name=Msa1080280
chr7_2 mRNA 79692590 79696288 79692590 ID=Msa1080280-mRNA-1;Parent=Msa1080280;Name=Msa1080280-mRNA-1;_AED=0.01;_eAED=0.01;_QI=439|1|1|1|1|1|3|245|470
chr7_2 exon 79692590 79693730 79692590 ID=Msa1080280-mRNA-1:exon:20050;Parent=Msa1080280-mRNA-1
chr7_2 exon 79694309 79694501 79694309 ID=Msa1080280-mRNA-1:exon:20051;Parent=Msa1080280-mRNA-1
chr7_2 exon 79695526 79696288 79695526 ID=Msa1080280-mRNA-1:exon:20052;Parent=Msa1080280-mRNA-1
chr7_2 five_prime_UTR 79692590 79693028 79692590 ID=Msa1080280-mRNA-1:five_prime_utr;Parent=Msa1080280-mRNA-1
chr7_2 CDS 79693029 79693730 79693029 ID=Msa1080280-mRNA-1:cds;Parent=Msa1080280-mRNA-1
chr7_2 CDS 79694309 79694501 79694309 ID=Msa1080280-mRNA-1:cds;Parent=Msa1080280-mRNA-1
chr7_2 CDS 79695526 79696043 79695526 ID=Msa1080280-mRNA-1:cds;Parent=Msa1080280-mRNA-1
chr7_2 three_prime_UTR 79696044 79696288 79696044 ID=Msa1080280-mRNA-1:three_prime_utr;Parent=Msa1080280-mRNA-1
Gene Sequence

>Msa1080280

ATGATGGCTCCAAAATACTTACATGAGCTACTAAAAGAAGATCAAGAACCATTTCTTCTCAACAACTACATTTCACATAAACGTAGCCAAATGAAAATCACTACTTTACAACTCAAGAAAAAACCATTCAACTCAAAATCAAACTTCAACATGAATCTTTGTAAAAACACTTCTTGTTTTTTCTCATTTCCCGAAACACCTGACTTCAAAAAATCACCACTGTTTGAACTAACTTCCCCTGTTAAAAGTCCCTCTTCTCGAACAGCAACACTTCTTCTTGAAGCTGCTCTCAGGATCCAGAAACATTCATCATCTTCTTCTTCTTCTTCTTCAAGTTCCAAAAACAAAACAAAAAACAAAGGCTTTGGGCTATTTGGTTCTTTGTTCAAGAAACTAACGCAACGAAACCAGAATCGGAAGCAGGAAATAGAGAATGAATATGTGTCTGTGAGGGAGTTATTGAAGTTGGATTCTTCTGTGAAGGTACGTAGAGAAAAAATGGATTCTCAGAAGAAAAACAACTTGGAACATATAGAAACTTCAAGTAGTGGTTACTCATTTGTTACTGATCATGAAGCTTGTGCTTGTCGCCATCACCAACATGCTTTTCCTGAAAGTCCTTTTCGTTTTGCTCTTCAAACAAGTCCTTGCTCCGGCAGCCACACCCCGGAGTTAGCGTCGCCGAGTCGAAACATAACTGAGGACAAAGAAAGTAATGAAGCAGTTGAAAGTATCAATCAATTCAAGTCAGGGGAAGAAGAGGAGGAAGATAAGGAACAGTGTAGTCCAGTCTGTGTTTTAGACCCACCATTCGAGGATGATGATGAAGTACATATAAACGATGATGAAGATGGTGTTGATTTTGATTTAGAGAGCGGCTATGCCATTGTTCAGAGAGCAAGGCAGAAGATATTGTACAAGCTTTGCAGATTTGAGAAACTTGCAGAATTGGATCCATTAGAACTTGAGAAAAGAATGCTGGATCAAGAAGAGGATGAGGATGAAACATATATGGAAGAGGATGATGTTGAAGATGAGGAAAGAGAAGTATCATTTAAAGAAAATGACTTCAAAGAATTGGTTTTTGAAGCTGTGTATCTGTCAATGGTCCATGACAGACAGCAAATCCCACAAGAATTTAAGAAACTGATATCTGATCTAATCGTGGAAGAAGAGAGAGAACTCGATTCTTTAGAAGATAGCGACGTGGTGATAGCTAGGATATTGAAGAGGTTGGAATCATGGAAAGAAGTGGAGTCAAACACAATTGATATGATGATAGAAGAGGATTTCTCTATAGAGGATGGAGGGTGGAAGAAAAATGCTGAGCAGATAAGGAACATGGCTGGGGAGATTGAGCTTGCAATCTTTAGCATTCTGGTGGATGAATTTTCAGAGGAATTAGCATGTTAA
Protein sequence

>Msa1080280

MMAPKYLHELLKEDQEPFLLNNYISHKRSQMKITTLQLKKKPFNSKSNFNMNLCKNTSCFFSFPETPDFKKSPLFELTSPVKSPSSRTATLLLEAALRIQKHSSSSSSSSSSSKNKTKNKGFGLFGSLFKKLTQRNQNRKQEIENEYVSVRELLKLDSSVKVRREKMDSQKKNNLEHIETSSSGYSFVTDHEACACRHHQHAFPESPFRFALQTSPCSGSHTPELASPSRNITEDKESNEAVESINQFKSGEEEEEDKEQCSPVCVLDPPFEDDDEVHINDDEDGVDFDLESGYAIVQRARQKILYKLCRFEKLAELDPLELEKRMLDQEEDEDETYMEEDDVEDEEREVSFKENDFKELVFEAVYLSMVHDRQQIPQEFKKLISDLIVEEERELDSLEDSDVVIARILKRLESWKEVESNTIDMMIEEDFSIEDGGWKKNAEQIRNMAGEIELAIFSILVDEFSEELAC*