AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1041770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041770 MtrunA17_Chr7g0265901 93.920 477 21 4 1 470 1 476 0.0 843
Msa1041770 MtrunA17_Chr1g0179151 51.141 526 178 17 1 470 2 504 5.16e-133 393
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041770 AT5G03670.1 37.893 541 236 19 1 469 1 513 1.18e-71 236
Msa1041770 AT5G03670.2 43.229 192 79 9 1 173 1 181 1.39e-30 123

Find 113 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAAGGCTTTGGGCTATT+TGG 0.129747 7_1:+79367926 Msa1041770:CDS
CTATTTCCTGCTTCCGATTC+TGG 0.143562 7_1:-79367979 None:intergenic
AGTAGCTCATGTAAGTATTT+TGG 0.148577 7_1:-79367581 None:intergenic
TAAACCCACATTATATTATT+TGG 0.168834 7_1:-79370714 None:intergenic
TCTAACATGGAATGTATTAT+TGG 0.229248 7_1:+79370652 Msa1041770:three_prime_UTR
AAGAAGATGATGAATGTTTC+TGG 0.233486 7_1:-79367868 None:intergenic
CAGAGGAATTAGCATGTTAA+TGG 0.248136 7_1:+79370567 Msa1041770:CDS
GTCTACTACTACATAATAAA+TGG 0.254280 7_1:-79367274 None:intergenic
GACAGAATAAAATTAAAATT+TGG 0.262186 7_1:-79367218 None:intergenic
GCTTGCAATCTTTAGCATTC+TGG 0.276232 7_1:+79370532 Msa1041770:CDS
GCAAAACGAAAAGGACTTTC+AGG 0.307629 7_1:-79368181 None:intergenic
ATTTGAGAAACTTGCAGAAT+TGG 0.308653 7_1:+79370103 Msa1041770:CDS
AGAAAATGACTTCAAAGAAT+TGG 0.324338 7_1:+79370232 Msa1041770:CDS
AAAATTTGGCAGTAAATTGT+AGG 0.334444 7_1:-79367204 None:intergenic
GGATGAGGATGAAACATATA+TGG 0.353271 7_1:+79370166 Msa1041770:CDS
AGAGGAATTAGCATGTTAAT+GGG 0.362915 7_1:+79370568 Msa1041770:exon
CTAACTAAGTTGTTGTGAAA+TGG 0.368081 7_1:-79367541 None:intergenic
CTAACATGGAATGTATTATT+GGG 0.405525 7_1:+79370653 Msa1041770:three_prime_UTR
GTGGGATTTGCTGTCTGTCA+TGG 0.410641 7_1:-79370283 None:intergenic
TTAGTTAGTTTATGTGATGA+TGG 0.419692 7_1:+79367556 Msa1041770:exon
AGTATCAATCAATTCAAGTC+AGG 0.420527 7_1:+79368879 Msa1041770:CDS
TCTTCTAATATAAAGAATAA+AGG 0.431130 7_1:-79370623 None:intergenic
AGTTGATTCAAATCTGAAGT+TGG 0.435953 7_1:-79367360 None:intergenic
TGTGAGGGAGTTATTGAAGT+TGG 0.436041 7_1:+79368018 Msa1041770:CDS
GTTGATTCAAATCTGAAGTT+GGG 0.437140 7_1:-79367359 None:intergenic
TAACTCCGGGGTGTGGCTGC+CGG 0.441342 7_1:-79368224 None:intergenic
TATTGAAGAGGTTGGAATCA+TGG 0.442336 7_1:+79370396 Msa1041770:CDS
ATTATTATTGTAAAATAATG+AGG 0.446933 7_1:-79367241 None:intergenic
TCAGTTTCTTAAATTCTTGT+GGG 0.447004 7_1:-79370301 None:intergenic
CTTGTACAGTAGGATTCTAT+AGG 0.450502 7_1:-79367154 None:intergenic
TTCTTCTTGAAGCTGCTCTC+AGG 0.452952 7_1:+79367843 Msa1041770:CDS
TTCAAATCTGAAGTTGGGTT+AGG 0.457886 7_1:-79367354 None:intergenic
ATCAGTTTCTTAAATTCTTG+TGG 0.459352 7_1:-79370302 None:intergenic
ATGTAGTTGTTGAGAAGAAA+TGG 0.459717 7_1:-79367620 None:intergenic
TGAAGCTGTGTATCTGTCAA+TGG 0.460059 7_1:+79370259 Msa1041770:CDS
AGCTAGGATATTGAAGAGGT+TGG 0.467698 7_1:+79370388 Msa1041770:CDS
AGCAGATAAGGAACATGGCT+GGG 0.477023 7_1:+79370501 Msa1041770:CDS
GGGGTGTGGCTGCCGGAGCA+AGG 0.478890 7_1:-79368217 None:intergenic
AGAAGAGGATTTCTCTATAG+AGG 0.482598 7_1:+79370454 Msa1041770:CDS
CGACTCGGCGACGCTAACTC+CGG 0.495649 7_1:-79368238 None:intergenic
ACAGTAGGATTCTATAGGTT+AGG 0.501460 7_1:-79367149 None:intergenic
TAACGCAACGAAACCAGAAT+CGG 0.502950 7_1:+79367966 Msa1041770:CDS
GGAAGAAGAGGAGGAAGATA+AGG 0.504402 7_1:+79368902 Msa1041770:CDS
CAGGAAAAGCATGTTGGTGA+TGG 0.505950 7_1:-79368162 None:intergenic
GTTTGAAGAGCAAAACGAAA+AGG 0.508198 7_1:-79368190 None:intergenic
TAATTAAGCAAATGAGACTT+GGG 0.509466 7_1:-79370778 None:intergenic
TGCAATCTTTAGCATTCTGG+TGG 0.515937 7_1:+79370535 Msa1041770:CDS
ACGAAACCAGAATCGGAAGC+AGG 0.517439 7_1:+79367973 Msa1041770:CDS
GAGCAGATAAGGAACATGGC+TGG 0.519541 7_1:+79370500 Msa1041770:CDS
TTAATTAAGCAAATGAGACT+TGG 0.522926 7_1:-79370779 None:intergenic
ATGGAATGTATTATTGGGAT+AGG 0.523355 7_1:+79370658 Msa1041770:three_prime_UTR
GAAGTTGGATTCTTCTGTGA+AGG 0.523721 7_1:+79368033 Msa1041770:CDS
AGAACTTGAGAAAAGAATGC+TGG 0.525436 7_1:+79370133 Msa1041770:CDS
TACTTTCAGTCTTGTACAGT+AGG 0.531514 7_1:-79367164 None:intergenic
GGGGAGAGATGAGATGGGAT+GGG 0.539286 7_1:-79367322 None:intergenic
GGTGGGTCTAAAACACAGAC+TGG 0.539386 7_1:-79368936 None:intergenic
AGTGTTGCTGTTCGAGAAGA+GGG 0.539964 7_1:-79367821 None:intergenic
AGTGACCAAATAATATAATG+TGG 0.540524 7_1:+79370709 Msa1041770:three_prime_UTR
GCTGGATCAAGAAGAGGATG+AGG 0.543983 7_1:+79370151 Msa1041770:CDS
ATAGCGACGTGGTGATAGCT+AGG 0.544170 7_1:+79370372 Msa1041770:CDS
GCGACGCTAACTCCGGGGTG+TGG 0.547073 7_1:-79368231 None:intergenic
TTAAATGGGAGAGAATTTGA+AGG 0.549297 7_1:-79367447 None:intergenic
GAGGATTTCTCTATAGAGGA+TGG 0.553770 7_1:+79370458 Msa1041770:CDS
ATTCAAGTCAGGGGAAGAAG+AGG 0.558222 7_1:+79368890 Msa1041770:CDS
TCATCATCATCCTCGAATGG+TGG 0.561023 7_1:-79368954 None:intergenic
GAGGAATTAGCATGTTAATG+GGG 0.562269 7_1:+79370569 Msa1041770:exon
GTTGGAATCATGGAAAGAAG+TGG 0.563148 7_1:+79370406 Msa1041770:CDS
GGATGAAACATATATGGAAG+AGG 0.564977 7_1:+79370172 Msa1041770:CDS
CATATAAACGATGATGAAGA+TGG 0.565217 7_1:+79368981 Msa1041770:CDS
GACTTTCAGGAAAAGCATGT+TGG 0.568731 7_1:-79368168 None:intergenic
CATCATCATCCTCGAATGGT+GGG 0.573296 7_1:-79368953 None:intergenic
TTATTATTGTAAAATAATGA+GGG 0.577521 7_1:-79367240 None:intergenic
GTATCAATCAATTCAAGTCA+GGG 0.578564 7_1:+79368880 Msa1041770:CDS
AAGTGTTGCTGTTCGAGAAG+AGG 0.579304 7_1:-79367822 None:intergenic
GATTTCTCTATAGAGGATGG+AGG 0.589468 7_1:+79370461 Msa1041770:CDS
AATTGATATGATGATAGAAG+AGG 0.596171 7_1:+79370439 Msa1041770:CDS
AAGAATGCTGGATCAAGAAG+AGG 0.597514 7_1:+79370145 Msa1041770:CDS
CAAGTCAGGGGAAGAAGAGG+AGG 0.599409 7_1:+79368893 Msa1041770:CDS
CATATAGAAACTTCAAGTAG+TGG 0.602899 7_1:+79368100 Msa1041770:CDS
GTGACCAAATAATATAATGT+GGG 0.603907 7_1:+79370710 Msa1041770:three_prime_UTR
TACAAGACTGAAAGTAGGAA+AGG 0.604462 7_1:+79367171 Msa1041770:five_prime_UTR
CTTCAAACAAGTCCTTGCTC+CGG 0.604522 7_1:+79368205 Msa1041770:CDS
CTCATGTTTGTAGCTAGATG+TGG 0.606774 7_1:+79370749 Msa1041770:three_prime_UTR
TTGCTCCGGCAGCCACACCC+CGG 0.609299 7_1:+79368219 Msa1041770:CDS
ACCTCAGTTATGTTTCGACT+CGG 0.610662 7_1:-79368253 None:intergenic
AGAGGATGATGTTGAAGATG+AGG 0.613307 7_1:+79370190 Msa1041770:CDS
GCAGATAAGGAACATGGCTG+GGG 0.618512 7_1:+79370502 Msa1041770:CDS
GGATTCTATAGGTTAGGCGG+AGG 0.628968 7_1:-79367143 None:intergenic
ACTTCATCATCATCCTCGAA+TGG 0.634270 7_1:-79368957 None:intergenic
TAGAAGAGTATAGTCTAACA+TGG 0.635242 7_1:+79370639 Msa1041770:three_prime_UTR
ATAATGTGGGTTTATGTACA+TGG 0.637836 7_1:+79370723 Msa1041770:three_prime_UTR
TGCTGAGCAGATAAGGAACA+TGG 0.637996 7_1:+79370496 Msa1041770:CDS
TACTGTACAAGACTGAAAGT+AGG 0.639842 7_1:+79367166 Msa1041770:five_prime_UTR
AATTAAGCAAATGAGACTTG+GGG 0.640130 7_1:-79370777 None:intergenic
TCTCTATAGAGGATGGAGGG+TGG 0.640291 7_1:+79370465 Msa1041770:CDS
TATCAATCAATTCAAGTCAG+GGG 0.642576 7_1:+79368881 Msa1041770:CDS
ACTGATATCTGATCTAATCG+TGG 0.648080 7_1:+79370319 Msa1041770:CDS
GAAGTTGGGTTAGGAAACCA+AGG 0.649026 7_1:-79367345 None:intergenic
ATTTCTCTATAGAGGATGGA+GGG 0.649835 7_1:+79370462 Msa1041770:CDS
GAATGAATATGTGTCTGTGA+GGG 0.651219 7_1:+79368003 Msa1041770:CDS
GTAGGATTCTATAGGTTAGG+CGG 0.651239 7_1:-79367146 None:intergenic
TGATAGCTAGGATATTGAAG+AGG 0.656936 7_1:+79370384 Msa1041770:CDS
AGGAATTAGCATGTTAATGG+GGG 0.657803 7_1:+79370570 Msa1041770:exon
CTGTGACATACTCTGAACAA+TGG 0.660476 7_1:-79369033 None:intergenic
TTGGGTTAGGAAACCAAGGG+GGG 0.667246 7_1:-79367341 None:intergenic
AAGTTGGGTTAGGAAACCAA+GGG 0.677084 7_1:-79367344 None:intergenic
GTTGGGTTAGGAAACCAAGG+GGG 0.680940 7_1:-79367342 None:intergenic
GAGATGGGATGGGAGTGAAG+TGG 0.693403 7_1:-79367312 None:intergenic
AGAATGAATATGTGTCTGTG+AGG 0.718238 7_1:+79368002 Msa1041770:CDS
GGGGAAGTTAGTTCAAACAG+TGG 0.724917 7_1:-79367788 None:intergenic
TTCTTTAGAAGATAGCGACG+TGG 0.740114 7_1:+79370361 Msa1041770:CDS
GCCGAGTCGAAACATAACTG+AGG 0.752254 7_1:+79368252 Msa1041770:CDS
AGTTGGGTTAGGAAACCAAG+GGG 0.772580 7_1:-79367343 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTTTTTTTTTTATTT+TGG + chr7_1:79368302-79368321 Msa1041770:intron 0.0%
!! TTATTATTGTAAAATAATGA+GGG - chr7_1:79367243-79367262 None:intergenic 10.0%
!! ATTATTATTGTAAAATAATG+AGG - chr7_1:79367244-79367263 None:intergenic 10.0%
!!! TTTTCAATAATAAAAAGTTT+AGG - chr7_1:79369308-79369327 None:intergenic 10.0%
!!! AATTTTATAAAACTTGATAA+GGG - chr7_1:79369609-79369628 None:intergenic 10.0%
!!! AAATTTTATAAAACTTGATA+AGG - chr7_1:79369610-79369629 None:intergenic 10.0%
!! GACAGAATAAAATTAAAATT+TGG - chr7_1:79367221-79367240 None:intergenic 15.0%
!!! TTTGTTTTTTGTTTTGTTTT+TGG - chr7_1:79367912-79367931 None:intergenic 15.0%
!! AAAAACAAAACAAAAAACAA+AGG + chr7_1:79367911-79367930 Msa1041770:CDS 15.0%
!! TCTTCTAATATAAAGAATAA+AGG - chr7_1:79370626-79370645 None:intergenic 15.0%
!!! TGAAGATGTTTTGTTTAAAT+GGG - chr7_1:79367464-79367483 None:intergenic 20.0%
!!! TTGAAGATGTTTTGTTTAAA+TGG - chr7_1:79367465-79367484 None:intergenic 20.0%
!!! TTTTCGTTTTGAATGTTTAA+TGG + chr7_1:79368348-79368367 Msa1041770:intron 20.0%
!!! TGATTGTTTGTTTGTTTTTT+CGG + chr7_1:79368442-79368461 Msa1041770:intron 20.0%
!!! TTATTGACTCATTTTTTGTA+GGG - chr7_1:79368620-79368639 None:intergenic 20.0%
!!! TTTATTGACTCATTTTTTGT+AGG - chr7_1:79368621-79368640 None:intergenic 20.0%
!!! TTATTTAATGAGAGTTTTTG+TGG + chr7_1:79368817-79368836 Msa1041770:intron 20.0%
!!! GTTTTTGTGGAATTTAATAT+AGG + chr7_1:79368830-79368849 Msa1041770:intron 20.0%
!! ATACAATCAACAAATTAGAA+TGG - chr7_1:79369079-79369098 None:intergenic 20.0%
!!! ATTCTAATTTGTTGATTGTA+TGG + chr7_1:79369078-79369097 Msa1041770:intron 20.0%
!!! ACTTTTTTGTTTGTTTTGAT+TGG + chr7_1:79369635-79369654 Msa1041770:intron 20.0%
!! TGTAAAATTACTTGTCTTAA+GGG - chr7_1:79369802-79369821 None:intergenic 20.0%
!! ATGTAAAATTACTTGTCTTA+AGG - chr7_1:79369803-79369822 None:intergenic 20.0%
!!! CAAGTAATTTTACATATGTA+CGG + chr7_1:79369808-79369827 Msa1041770:intron 20.0%
!!! ATTTTGAAACTAAGTATGAA+TGG + chr7_1:79370596-79370615 Msa1041770:three_prime_UTR 20.0%
!! TAAACCCACATTATATTATT+TGG - chr7_1:79370717-79370736 None:intergenic 20.0%
! AAAATTTGGCAGTAAATTGT+AGG - chr7_1:79367207-79367226 None:intergenic 25.0%
! GTCTACTACTACATAATAAA+TGG - chr7_1:79367277-79367296 None:intergenic 25.0%
!! TTTTGTATTGTTAGTTAGAG+TGG - chr7_1:79367401-79367420 None:intergenic 25.0%
!! TTAGTTAGTTTATGTGATGA+TGG + chr7_1:79367556-79367575 Msa1041770:exon 25.0%
!! GTAAAGTAGTGATTTTCATT+TGG - chr7_1:79367661-79367680 None:intergenic 25.0%
!!! AAGTTTGATTTTGAGTTGAA+TGG - chr7_1:79367698-79367717 None:intergenic 25.0%
! AAAACAAAAAACAAAGGCTT+TGG + chr7_1:79367917-79367936 Msa1041770:CDS 25.0%
! AAACAAAAAACAAAGGCTTT+GGG + chr7_1:79367918-79367937 Msa1041770:CDS 25.0%
! AAGTACAATCATCAAAATTC+TGG - chr7_1:79368383-79368402 None:intergenic 25.0%
! TTGTACAAAAACACATTAAG+AGG + chr7_1:79369131-79369150 Msa1041770:intron 25.0%
! AAAAGTTTAGGTGAATTTGA+TGG - chr7_1:79369296-79369315 None:intergenic 25.0%
! TGAAAAACAAACACATTTAG+TGG + chr7_1:79369322-79369341 Msa1041770:intron 25.0%
! GAAAAACAAACACATTTAGT+GGG + chr7_1:79369323-79369342 Msa1041770:intron 25.0%
! AAAAACAAACACATTTAGTG+GGG + chr7_1:79369324-79369343 Msa1041770:intron 25.0%
!! CTCCTAAAATGAAATTTTGT+GGG - chr7_1:79369528-79369547 None:intergenic 25.0%
!! TCTCCTAAAATGAAATTTTG+TGG - chr7_1:79369529-79369548 None:intergenic 25.0%
! AGATCTTTCAATCAATATGT+TGG + chr7_1:79369562-79369581 Msa1041770:intron 25.0%
! TGACCTAATTAATACTCATT+GGG + chr7_1:79369706-79369725 Msa1041770:intron 25.0%
! TATCCCAATGAGTATTAATT+AGG - chr7_1:79369712-79369731 None:intergenic 25.0%
!! ATTTTGTGGTACCTTAAATT+TGG + chr7_1:79369733-79369752 Msa1041770:intron 25.0%
! ATTCTCAACAACCAAATTTA+AGG - chr7_1:79369747-79369766 None:intergenic 25.0%
!! ATCTAACCAAGATATTTTAC+AGG + chr7_1:79370047-79370066 Msa1041770:intron 25.0%
!!! ATTCTTTTCTCAAGTTCTAA+TGG - chr7_1:79370131-79370150 None:intergenic 25.0%
! AGAAAATGACTTCAAAGAAT+TGG + chr7_1:79370232-79370251 Msa1041770:CDS 25.0%
! TCAGTTTCTTAAATTCTTGT+GGG - chr7_1:79370304-79370323 None:intergenic 25.0%
! ATCAGTTTCTTAAATTCTTG+TGG - chr7_1:79370305-79370324 None:intergenic 25.0%
! AATTGATATGATGATAGAAG+AGG + chr7_1:79370439-79370458 Msa1041770:CDS 25.0%
! TCTAACATGGAATGTATTAT+TGG + chr7_1:79370652-79370671 Msa1041770:three_prime_UTR 25.0%
! CTAACATGGAATGTATTATT+GGG + chr7_1:79370653-79370672 Msa1041770:three_prime_UTR 25.0%
! AGTGACCAAATAATATAATG+TGG + chr7_1:79370709-79370728 Msa1041770:three_prime_UTR 25.0%
! GTGACCAAATAATATAATGT+GGG + chr7_1:79370710-79370729 Msa1041770:three_prime_UTR 25.0%
! TAATTAAGCAAATGAGACTT+GGG - chr7_1:79370781-79370800 None:intergenic 25.0%
! TTAATTAAGCAAATGAGACT+TGG - chr7_1:79370782-79370801 None:intergenic 25.0%
! GTTGATTCAAATCTGAAGTT+GGG - chr7_1:79367362-79367381 None:intergenic 30.0%
! AGTTGATTCAAATCTGAAGT+TGG - chr7_1:79367363-79367382 None:intergenic 30.0%
TTAAATGGGAGAGAATTTGA+AGG - chr7_1:79367450-79367469 None:intergenic 30.0%
CTAACTAAGTTGTTGTGAAA+TGG - chr7_1:79367544-79367563 None:intergenic 30.0%
! AGTAGCTCATGTAAGTATTT+TGG - chr7_1:79367584-79367603 None:intergenic 30.0%
ATGTAGTTGTTGAGAAGAAA+TGG - chr7_1:79367623-79367642 None:intergenic 30.0%
!!! TTTTTTGAAGTCAGGTGTTT+CGG - chr7_1:79367765-79367784 None:intergenic 30.0%
AAGAAGATGATGAATGTTTC+TGG - chr7_1:79367871-79367890 None:intergenic 30.0%
TTCTCAGAAGAAAAACAACT+TGG + chr7_1:79368075-79368094 Msa1041770:CDS 30.0%
CATATAGAAACTTCAAGTAG+TGG + chr7_1:79368100-79368119 Msa1041770:CDS 30.0%
TTTGTAGCAAATGAAACATG+TGG - chr7_1:79368546-79368565 None:intergenic 30.0%
AGTATCAATCAATTCAAGTC+AGG + chr7_1:79368879-79368898 Msa1041770:CDS 30.0%
GTATCAATCAATTCAAGTCA+GGG + chr7_1:79368880-79368899 Msa1041770:CDS 30.0%
TATCAATCAATTCAAGTCAG+GGG + chr7_1:79368881-79368900 Msa1041770:CDS 30.0%
CATATAAACGATGATGAAGA+TGG + chr7_1:79368981-79369000 Msa1041770:CDS 30.0%
!!! GTTGATTTTGATTTAGAGAG+CGG + chr7_1:79369005-79369024 Msa1041770:CDS 30.0%
ATTCAACTCAAATCCTACAA+GGG + chr7_1:79369177-79369196 Msa1041770:intron 30.0%
TTATATATCACCTATCAACG+AGG - chr7_1:79369214-79369233 None:intergenic 30.0%
TGTAGTTGTAAACAAAGAGT+AGG - chr7_1:79369473-79369492 None:intergenic 30.0%
! GACCCACAAAATTTCATTTT+AGG + chr7_1:79369523-79369542 Msa1041770:intron 30.0%
!!! TGTTTTGATTGGCAAATTGT+AGG + chr7_1:79369646-79369665 Msa1041770:intron 30.0%
! TAGGATGTTGGTAAATTAGT+TGG + chr7_1:79369665-79369684 Msa1041770:intron 30.0%
GTGACCTAATTAATACTCAT+TGG + chr7_1:79369705-79369724 Msa1041770:intron 30.0%
! ACTCATTGGGATAAATTTTG+TGG + chr7_1:79369719-79369738 Msa1041770:intron 30.0%
TATGGTACATGTAGCATTAT+AGG - chr7_1:79369779-79369798 None:intergenic 30.0%
AATTACTTGTCTTAAGGGTA+TGG - chr7_1:79369797-79369816 None:intergenic 30.0%
GAATAGAACAGTAAACTGAT+TGG - chr7_1:79369839-79369858 None:intergenic 30.0%
ATTTGAGAAACTTGCAGAAT+TGG + chr7_1:79370103-79370122 Msa1041770:CDS 30.0%
AGAGGAATTAGCATGTTAAT+GGG + chr7_1:79370568-79370587 Msa1041770:exon 30.0%
! TAGAAGAGTATAGTCTAACA+TGG + chr7_1:79370639-79370658 Msa1041770:three_prime_UTR 30.0%
ATGGAATGTATTATTGGGAT+AGG + chr7_1:79370658-79370677 Msa1041770:three_prime_UTR 30.0%
ATAATGTGGGTTTATGTACA+TGG + chr7_1:79370723-79370742 Msa1041770:three_prime_UTR 30.0%
AATTAAGCAAATGAGACTTG+GGG - chr7_1:79370780-79370799 None:intergenic 30.0%
ACAGTAGGATTCTATAGGTT+AGG - chr7_1:79367152-79367171 None:intergenic 35.0%
CTTGTACAGTAGGATTCTAT+AGG - chr7_1:79367157-79367176 None:intergenic 35.0%
! TACTTTCAGTCTTGTACAGT+AGG - chr7_1:79367167-79367186 None:intergenic 35.0%
TACTGTACAAGACTGAAAGT+AGG + chr7_1:79367166-79367185 Msa1041770:five_prime_UTR 35.0%
TACAAGACTGAAAGTAGGAA+AGG + chr7_1:79367171-79367190 Msa1041770:five_prime_UTR 35.0%
! TTCAAATCTGAAGTTGGGTT+AGG - chr7_1:79367357-79367376 None:intergenic 35.0%
!!! TTTTTGAAGTCAGGTGTTTC+GGG - chr7_1:79367764-79367783 None:intergenic 35.0%
!!! AGTGGTGATTTTTTGAAGTC+AGG - chr7_1:79367773-79367792 None:intergenic 35.0%
AGAATGAATATGTGTCTGTG+AGG + chr7_1:79368002-79368021 Msa1041770:CDS 35.0%
GAATGAATATGTGTCTGTGA+GGG + chr7_1:79368003-79368022 Msa1041770:CDS 35.0%
! GAAGGTACGTAGAGAAAAAA+TGG + chr7_1:79368051-79368070 Msa1041770:CDS 35.0%
GTTTGAAGAGCAAAACGAAA+AGG - chr7_1:79368193-79368212 None:intergenic 35.0%
GATTCAACTCAAATCCTACA+AGG + chr7_1:79369176-79369195 Msa1041770:intron 35.0%
ATTGGCAAATTGTAGGATGT+TGG + chr7_1:79369653-79369672 Msa1041770:intron 35.0%
CATACTTTCACTCGACAATA+TGG + chr7_1:79369868-79369887 Msa1041770:intron 35.0%
CTTGCTCCTGTAAAATATCT+TGG - chr7_1:79370056-79370075 None:intergenic 35.0%
! CAAGATATTTTACAGGAGCA+AGG + chr7_1:79370054-79370073 Msa1041770:intron 35.0%
AGAACTTGAGAAAAGAATGC+TGG + chr7_1:79370133-79370152 Msa1041770:CDS 35.0%
GGATGAGGATGAAACATATA+TGG + chr7_1:79370166-79370185 Msa1041770:CDS 35.0%
GGATGAAACATATATGGAAG+AGG + chr7_1:79370172-79370191 Msa1041770:CDS 35.0%
ACTGATATCTGATCTAATCG+TGG + chr7_1:79370319-79370338 Msa1041770:CDS 35.0%
TGATAGCTAGGATATTGAAG+AGG + chr7_1:79370384-79370403 Msa1041770:CDS 35.0%
TATTGAAGAGGTTGGAATCA+TGG + chr7_1:79370396-79370415 Msa1041770:CDS 35.0%
AGAAGAGGATTTCTCTATAG+AGG + chr7_1:79370454-79370473 Msa1041770:CDS 35.0%
ATTTCTCTATAGAGGATGGA+GGG + chr7_1:79370462-79370481 Msa1041770:CDS 35.0%
AGAAAAATGCTGAGCAGATA+AGG + chr7_1:79370489-79370508 Msa1041770:CDS 35.0%
CAGAGGAATTAGCATGTTAA+TGG + chr7_1:79370567-79370586 Msa1041770:CDS 35.0%
GAGGAATTAGCATGTTAATG+GGG + chr7_1:79370569-79370588 Msa1041770:exon 35.0%
AGGAATTAGCATGTTAATGG+GGG + chr7_1:79370570-79370589 Msa1041770:exon 35.0%
GTAGGATTCTATAGGTTAGG+CGG - chr7_1:79367149-79367168 None:intergenic 40.0%
! AAGTTGGGTTAGGAAACCAA+GGG - chr7_1:79367347-79367366 None:intergenic 40.0%
! AGAAGAGGGACTTTTAACAG+GGG - chr7_1:79367810-79367829 None:intergenic 40.0%
! GAGAAGAGGGACTTTTAACA+GGG - chr7_1:79367811-79367830 None:intergenic 40.0%
!! AACAAAGGCTTTGGGCTATT+TGG + chr7_1:79367926-79367945 Msa1041770:CDS 40.0%
TAACGCAACGAAACCAGAAT+CGG + chr7_1:79367966-79367985 Msa1041770:CDS 40.0%
TGTGAGGGAGTTATTGAAGT+TGG + chr7_1:79368018-79368037 Msa1041770:CDS 40.0%
GAAGTTGGATTCTTCTGTGA+AGG + chr7_1:79368033-79368052 Msa1041770:CDS 40.0%
! GACTTTCAGGAAAAGCATGT+TGG - chr7_1:79368171-79368190 None:intergenic 40.0%
GCAAAACGAAAAGGACTTTC+AGG - chr7_1:79368184-79368203 None:intergenic 40.0%
ACCTCAGTTATGTTTCGACT+CGG - chr7_1:79368256-79368275 None:intergenic 40.0%
CAGAGAGAGAAAGATTTGCA+TGG - chr7_1:79368422-79368441 None:intergenic 40.0%
ACTTCATCATCATCCTCGAA+TGG - chr7_1:79368960-79368979 None:intergenic 40.0%
CTGTGACATACTCTGAACAA+TGG - chr7_1:79369036-79369055 None:intergenic 40.0%
AACACATTAAGAGGCAACCT+TGG + chr7_1:79369140-79369159 Msa1041770:intron 40.0%
GAGTTGAATCCTTACCAACA+AGG - chr7_1:79369166-79369185 None:intergenic 40.0%
ACAGCTGCTCAACATGTAAA+AGG + chr7_1:79369414-79369433 Msa1041770:intron 40.0%
! AAGGCATTTCCCATTCAATG+TGG + chr7_1:79369433-79369452 Msa1041770:intron 40.0%
TTTCCCATTCAATGTGGACT+TGG + chr7_1:79369439-79369458 Msa1041770:intron 40.0%
TAAACAAAGAGTAGGCCACT+AGG - chr7_1:79369465-79369484 None:intergenic 40.0%
AAGAATGCTGGATCAAGAAG+AGG + chr7_1:79370145-79370164 Msa1041770:CDS 40.0%
AGAGGATGATGTTGAAGATG+AGG + chr7_1:79370190-79370209 Msa1041770:CDS 40.0%
TGAAGCTGTGTATCTGTCAA+TGG + chr7_1:79370259-79370278 Msa1041770:CDS 40.0%
! TTCTTTAGAAGATAGCGACG+TGG + chr7_1:79370361-79370380 Msa1041770:CDS 40.0%
AGCTAGGATATTGAAGAGGT+TGG + chr7_1:79370388-79370407 Msa1041770:CDS 40.0%
GTTGGAATCATGGAAAGAAG+TGG + chr7_1:79370406-79370425 Msa1041770:CDS 40.0%
GAGGATTTCTCTATAGAGGA+TGG + chr7_1:79370458-79370477 Msa1041770:CDS 40.0%
GATTTCTCTATAGAGGATGG+AGG + chr7_1:79370461-79370480 Msa1041770:CDS 40.0%
GCTTGCAATCTTTAGCATTC+TGG + chr7_1:79370532-79370551 Msa1041770:CDS 40.0%
TGCAATCTTTAGCATTCTGG+TGG + chr7_1:79370535-79370554 Msa1041770:CDS 40.0%
!! TCTGGTGGATGAATTTTCAG+AGG + chr7_1:79370550-79370569 Msa1041770:CDS 40.0%
CTCATGTTTGTAGCTAGATG+TGG + chr7_1:79370749-79370768 Msa1041770:three_prime_UTR 40.0%
! AGTTGGGTTAGGAAACCAAG+GGG - chr7_1:79367346-79367365 None:intergenic 45.0%
! GAAGTTGGGTTAGGAAACCA+AGG - chr7_1:79367348-79367367 None:intergenic 45.0%
GGGGAAGTTAGTTCAAACAG+TGG - chr7_1:79367791-79367810 None:intergenic 45.0%
! CGAGAAGAGGGACTTTTAAC+AGG - chr7_1:79367812-79367831 None:intergenic 45.0%
! AGTGTTGCTGTTCGAGAAGA+GGG - chr7_1:79367824-79367843 None:intergenic 45.0%
! AAGTGTTGCTGTTCGAGAAG+AGG - chr7_1:79367825-79367844 None:intergenic 45.0%
TTCTTCTTGAAGCTGCTCTC+AGG + chr7_1:79367843-79367862 Msa1041770:CDS 45.0%
CTATTTCCTGCTTCCGATTC+TGG - chr7_1:79367982-79368001 None:intergenic 45.0%
! CAGGAAAAGCATGTTGGTGA+TGG - chr7_1:79368165-79368184 None:intergenic 45.0%
CTTCAAACAAGTCCTTGCTC+CGG + chr7_1:79368205-79368224 Msa1041770:CDS 45.0%
ATTCAAGTCAGGGGAAGAAG+AGG + chr7_1:79368890-79368909 Msa1041770:CDS 45.0%
GGAAGAAGAGGAGGAAGATA+AGG + chr7_1:79368902-79368921 Msa1041770:CDS 45.0%
!! TGTTTTAGACCCACCATTCG+AGG + chr7_1:79368944-79368963 Msa1041770:CDS 45.0%
CATCATCATCCTCGAATGGT+GGG - chr7_1:79368956-79368975 None:intergenic 45.0%
TCATCATCATCCTCGAATGG+TGG - chr7_1:79368957-79368976 None:intergenic 45.0%
AATCCTTACCAACAAGGCCA+AGG - chr7_1:79369160-79369179 None:intergenic 45.0%
AGGCCAAGTCCACATTGAAT+GGG - chr7_1:79369445-79369464 None:intergenic 45.0%
TAGGCCAAGTCCACATTGAA+TGG - chr7_1:79369446-79369465 None:intergenic 45.0%
TGCTGAGCAGATAAGGAACA+TGG + chr7_1:79370496-79370515 Msa1041770:CDS 45.0%
AGCAGATAAGGAACATGGCT+GGG + chr7_1:79370501-79370520 Msa1041770:CDS 45.0%
GGATTCTATAGGTTAGGCGG+AGG - chr7_1:79367146-79367165 None:intergenic 50.0%
! TTGGGTTAGGAAACCAAGGG+GGG - chr7_1:79367344-79367363 None:intergenic 50.0%
! GTTGGGTTAGGAAACCAAGG+GGG - chr7_1:79367345-79367364 None:intergenic 50.0%
ACGAAACCAGAATCGGAAGC+AGG + chr7_1:79367973-79367992 Msa1041770:CDS 50.0%
GCCGAGTCGAAACATAACTG+AGG + chr7_1:79368252-79368271 Msa1041770:CDS 50.0%
! GGTGGGTCTAAAACACAGAC+TGG - chr7_1:79368939-79368958 None:intergenic 50.0%
!! CAACCTTGGCCTTGTTGGTA+AGG + chr7_1:79369154-79369173 Msa1041770:intron 50.0%
CGATGTGAGACCTCGTTGAT+AGG + chr7_1:79369201-79369220 Msa1041770:intron 50.0%
TTCTAACCGTGATGAGCGCA+CGG + chr7_1:79369270-79369289 Msa1041770:intron 50.0%
TCAATGTGGACTTGGCCTAG+TGG + chr7_1:79369447-79369466 Msa1041770:intron 50.0%
GCTGGATCAAGAAGAGGATG+AGG + chr7_1:79370151-79370170 Msa1041770:CDS 50.0%
!! GTGGGATTTGCTGTCTGTCA+TGG - chr7_1:79370286-79370305 None:intergenic 50.0%
ATAGCGACGTGGTGATAGCT+AGG + chr7_1:79370372-79370391 Msa1041770:CDS 50.0%
TCTCTATAGAGGATGGAGGG+TGG + chr7_1:79370465-79370484 Msa1041770:CDS 50.0%
GAGCAGATAAGGAACATGGC+TGG + chr7_1:79370500-79370519 Msa1041770:CDS 50.0%
GCAGATAAGGAACATGGCTG+GGG + chr7_1:79370502-79370521 Msa1041770:CDS 50.0%
GAGATGGGATGGGAGTGAAG+TGG - chr7_1:79367315-79367334 None:intergenic 55.0%
GGGGAGAGATGAGATGGGAT+GGG - chr7_1:79367325-79367344 None:intergenic 55.0%
CAAGGGGGGAGAGATGAGAT+GGG - chr7_1:79367330-79367349 None:intergenic 55.0%
CAAGTCAGGGGAAGAAGAGG+AGG + chr7_1:79368893-79368912 Msa1041770:CDS 55.0%
!! AGAGGCAACCTTGGCCTTGT+TGG + chr7_1:79369149-79369168 Msa1041770:intron 55.0%
GGTCTCACATCGACCCTTGT+AGG - chr7_1:79369193-79369212 None:intergenic 55.0%
GGGGGAGAGATGAGATGGGA+TGG - chr7_1:79367326-79367345 None:intergenic 60.0%
CCAAGGGGGGAGAGATGAGA+TGG - chr7_1:79367331-79367350 None:intergenic 60.0%
CCATCTCATCTCTCCCCCCT+TGG + chr7_1:79367328-79367347 Msa1041770:five_prime_UTR 60.0%
TGATGGCCGTGCGCTCATCA+CGG - chr7_1:79369279-79369298 None:intergenic 60.0%
TAACTCCGGGGTGTGGCTGC+CGG - chr7_1:79368227-79368246 None:intergenic 65.0%
ACTCGGCGACGCTAACTCCG+GGG - chr7_1:79368239-79368258 None:intergenic 65.0%
GACTCGGCGACGCTAACTCC+GGG - chr7_1:79368240-79368259 None:intergenic 65.0%
! CGACTCGGCGACGCTAACTC+CGG - chr7_1:79368241-79368260 None:intergenic 65.0%
TTGCTCCGGCAGCCACACCC+CGG + chr7_1:79368219-79368238 Msa1041770:CDS 70.0%
GCGACGCTAACTCCGGGGTG+TGG - chr7_1:79368234-79368253 None:intergenic 70.0%
GGGGTGTGGCTGCCGGAGCA+AGG - chr7_1:79368220-79368239 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 79367133 79370831 79367133 ID=Msa1041770;Name=Msa1041770
chr7_1 mRNA 79367133 79370831 79367133 ID=Msa1041770-mRNA-1;Parent=Msa1041770;Name=Msa1041770-mRNA-1;_AED=0.01;_eAED=0.01;_QI=439|1|1|1|1|1|3|245|470
chr7_1 exon 79367133 79368273 79367133 ID=Msa1041770-mRNA-1:exon:21379;Parent=Msa1041770-mRNA-1
chr7_1 exon 79368852 79369044 79368852 ID=Msa1041770-mRNA-1:exon:21380;Parent=Msa1041770-mRNA-1
chr7_1 exon 79370069 79370831 79370069 ID=Msa1041770-mRNA-1:exon:21381;Parent=Msa1041770-mRNA-1
chr7_1 five_prime_UTR 79367133 79367571 79367133 ID=Msa1041770-mRNA-1:five_prime_utr;Parent=Msa1041770-mRNA-1
chr7_1 CDS 79367572 79368273 79367572 ID=Msa1041770-mRNA-1:cds;Parent=Msa1041770-mRNA-1
chr7_1 CDS 79368852 79369044 79368852 ID=Msa1041770-mRNA-1:cds;Parent=Msa1041770-mRNA-1
chr7_1 CDS 79370069 79370586 79370069 ID=Msa1041770-mRNA-1:cds;Parent=Msa1041770-mRNA-1
chr7_1 three_prime_UTR 79370587 79370831 79370587 ID=Msa1041770-mRNA-1:three_prime_utr;Parent=Msa1041770-mRNA-1
Gene Sequence

>Msa1041770

ATGATGGCTCCAAAATACTTACATGAGCTACTAAAAGAAGATCAAGAACCATTTCTTCTCAACAACTACATTTCACATAAACGTAGCCAAATGAAAATCACTACTTTACAACTCAAGAAAAAACCATTCAACTCAAAATCAAACTTCAACATGAATCTTTGTAAAAACACTTCTTGTTTTTTCTCATTTCCCGAAACACCTGACTTCAAAAAATCACCACTGTTTGAACTAACTTCCCCTGTTAAAAGTCCCTCTTCTCGAACAGCAACACTTCTTCTTGAAGCTGCTCTCAGGATCCAGAAACATTCATCATCTTCTTCTTCTTCTTCTTCAAGTTCCAAAAACAAAACAAAAAACAAAGGCTTTGGGCTATTTGGTTCTTTGTTCAAGAAACTAACGCAACGAAACCAGAATCGGAAGCAGGAAATAGAGAATGAATATGTGTCTGTGAGGGAGTTATTGAAGTTGGATTCTTCTGTGAAGGTACGTAGAGAAAAAATGGATTCTCAGAAGAAAAACAACTTGGAACATATAGAAACTTCAAGTAGTGGTTACTCATTTGTTACTGATCATGAAGCTTGTGCTTGTCGCCATCACCAACATGCTTTTCCTGAAAGTCCTTTTCGTTTTGCTCTTCAAACAAGTCCTTGCTCCGGCAGCCACACCCCGGAGTTAGCGTCGCCGAGTCGAAACATAACTGAGGACAAAGAAAGTAATGAAGCAGTTGAAAGTATCAATCAATTCAAGTCAGGGGAAGAAGAGGAGGAAGATAAGGAACAGTGTAGTCCAGTCTGTGTTTTAGACCCACCATTCGAGGATGATGATGAAGTACATATAAACGATGATGAAGATGGTGTTGATTTTGATTTAGAGAGCGGCTATGCCATTGTTCAGAGAGCAAGGCAGAAGATATTGTACAAGCTTTGCAGATTTGAGAAACTTGCAGAATTGGATCCATTAGAACTTGAGAAAAGAATGCTGGATCAAGAAGAGGATGAGGATGAAACATATATGGAAGAGGATGATGTTGAAGATGAGGAAAGAGAAGTATCATTTAAAGAAAATGACTTCAAAGAATTGGTTTTTGAAGCTGTGTATCTGTCAATGGTCCATGACAGACAGCAAATCCCACAAGAATTTAAGAAACTGATATCTGATCTAATCGTGGAAGAAGAGAGAGAACTCGATTCTTTAGAAGATAGCGACGTGGTGATAGCTAGGATATTGAAGAGGTTGGAATCATGGAAAGAAGTGGAGTCAAACACAATTGATATGATGATAGAAGAGGATTTCTCTATAGAGGATGGAGGGTGGAAGAAAAATGCTGAGCAGATAAGGAACATGGCTGGGGAGATTGAGCTTGCAATCTTTAGCATTCTGGTGGATGAATTTTCAGAGGAATTAGCATGTTAA
Protein sequence

>Msa1041770

MMAPKYLHELLKEDQEPFLLNNYISHKRSQMKITTLQLKKKPFNSKSNFNMNLCKNTSCFFSFPETPDFKKSPLFELTSPVKSPSSRTATLLLEAALRIQKHSSSSSSSSSSSKNKTKNKGFGLFGSLFKKLTQRNQNRKQEIENEYVSVRELLKLDSSVKVRREKMDSQKKNNLEHIETSSSGYSFVTDHEACACRHHQHAFPESPFRFALQTSPCSGSHTPELASPSRNITEDKESNEAVESINQFKSGEEEEEDKEQCSPVCVLDPPFEDDDEVHINDDEDGVDFDLESGYAIVQRARQKILYKLCRFEKLAELDPLELEKRMLDQEEDEDETYMEEDDVEDEEREVSFKENDFKELVFEAVYLSMVHDRQQIPQEFKKLISDLIVEEERELDSLEDSDVVIARILKRLESWKEVESNTIDMMIEEDFSIEDGGWKKNAEQIRNMAGEIELAIFSILVDEFSEELAC*