Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055540 | XP_003588683.2 | 95.745 | 423 | 17 | 1 | 1 | 423 | 1 | 422 | 0.0 | 830 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055540 | sp|Q147G5|CCA22_ARATH | 50.939 | 426 | 176 | 6 | 14 | 423 | 26 | 434 | 6.94e-134 | 394 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055540 | G7I6A9 | 95.745 | 423 | 17 | 1 | 1 | 423 | 1 | 422 | 0.0 | 830 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007170 | Msa0055540 | 0.878988 | 1.798049e-69 | -8.615850e-47 |
| Msa0055540 | Msa0100840 | 0.830853 | 2.324565e-55 | -8.615850e-47 |
| Msa0055540 | Msa0621870 | 0.805101 | 1.570733e-49 | -8.615850e-47 |
| Msa0055540 | Msa0743630 | 0.811893 | 5.575454e-51 | -8.615850e-47 |
| Msa0055540 | Msa0788490 | 0.813810 | 2.120348e-51 | -8.615850e-47 |
| Msa0055540 | Msa0816390 | 0.803770 | 2.975339e-49 | -8.615850e-47 |
| Msa0055540 | Msa0863780 | 0.805973 | 1.030715e-49 | -8.615850e-47 |
| Msa0055540 | Msa1081650 | 0.801112 | 1.049811e-48 | -8.615850e-47 |
| Msa0055540 | Msa1265990 | 0.805758 | 1.143496e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055540 | MtrunA17_Chr1g0148681 | 95.694 | 418 | 17 | 1 | 6 | 423 | 1 | 417 | 0.0 | 820 |
| Msa0055540 | MtrunA17_Chr3g0138431 | 57.826 | 460 | 142 | 6 | 14 | 423 | 17 | 474 | 0.0 | 516 |
| Msa0055540 | MtrunA17_Chr2g0332181 | 46.980 | 447 | 179 | 10 | 8 | 423 | 10 | 429 | 1.73e-116 | 347 |
| Msa0055540 | MtrunA17_Chr2g0332171 | 60.498 | 281 | 108 | 3 | 146 | 423 | 205 | 485 | 2.92e-113 | 340 |
| Msa0055540 | MtrunA17_Chr3g0125051 | 51.661 | 271 | 131 | 0 | 143 | 413 | 221 | 491 | 1.83e-96 | 298 |
| Msa0055540 | MtrunA17_Chr3g0125041 | 50.558 | 269 | 131 | 1 | 146 | 412 | 227 | 495 | 2.20e-93 | 290 |
| Msa0055540 | MtrunA17_Chr1g0152871 | 49.123 | 285 | 141 | 3 | 139 | 420 | 68 | 351 | 1.28e-89 | 276 |
| Msa0055540 | MtrunA17_Chr3g0134401 | 48.249 | 257 | 133 | 0 | 162 | 418 | 74 | 330 | 3.25e-83 | 258 |
| Msa0055540 | MtrunA17_Chr3g0134421 | 47.059 | 272 | 142 | 1 | 149 | 418 | 71 | 342 | 5.86e-81 | 253 |
| Msa0055540 | MtrunA17_Chr3g0134411 | 45.221 | 272 | 147 | 1 | 149 | 418 | 78 | 349 | 3.28e-78 | 246 |
| Msa0055540 | MtrunA17_Chr3g0134441 | 48.106 | 264 | 135 | 2 | 155 | 418 | 61 | 322 | 3.83e-74 | 234 |
| Msa0055540 | MtrunA17_Chr7g0255771 | 42.125 | 273 | 153 | 5 | 146 | 416 | 182 | 451 | 1.46e-62 | 209 |
| Msa0055540 | MtrunA17_Chr5g0406741 | 40.074 | 272 | 155 | 4 | 146 | 416 | 155 | 419 | 4.41e-59 | 199 |
| Msa0055540 | MtrunA17_Chr5g0441371 | 41.328 | 271 | 150 | 6 | 148 | 416 | 150 | 413 | 1.22e-57 | 194 |
| Msa0055540 | MtrunA17_Chr3g0134431 | 43.902 | 246 | 115 | 4 | 166 | 409 | 13 | 237 | 5.53e-57 | 188 |
| Msa0055540 | MtrunA17_Chr8g0370671 | 38.989 | 277 | 157 | 6 | 143 | 416 | 156 | 423 | 9.05e-57 | 192 |
| Msa0055540 | MtrunA17_Chr8g0357001 | 42.396 | 217 | 118 | 3 | 162 | 378 | 486 | 695 | 1.77e-47 | 173 |
| Msa0055540 | MtrunA17_Chr3g0102851 | 32.184 | 261 | 162 | 9 | 131 | 386 | 2 | 252 | 8.13e-28 | 111 |
| Msa0055540 | MtrunA17_Chr3g0103471 | 33.333 | 240 | 144 | 7 | 144 | 377 | 4 | 233 | 7.84e-27 | 108 |
| Msa0055540 | MtrunA17_Chr3g0102861 | 32.636 | 239 | 147 | 6 | 144 | 377 | 4 | 233 | 1.03e-25 | 105 |
| Msa0055540 | MtrunA17_Chr3g0102621 | 32.444 | 225 | 136 | 7 | 159 | 377 | 25 | 239 | 3.89e-24 | 101 |
| Msa0055540 | MtrunA17_Chr5g0418901 | 48.101 | 79 | 41 | 0 | 217 | 295 | 7 | 85 | 2.72e-21 | 87.8 |
| Msa0055540 | MtrunA17_Chr3g0102631 | 36.842 | 171 | 97 | 6 | 213 | 377 | 1 | 166 | 7.00e-21 | 90.5 |
| Msa0055540 | MtrunA17_Chr3g0102651 | 36.842 | 171 | 97 | 6 | 213 | 377 | 1 | 166 | 7.00e-21 | 90.5 |
| Msa0055540 | MtrunA17_Chr3g0102661 | 36.842 | 171 | 97 | 6 | 213 | 377 | 1 | 166 | 7.00e-21 | 90.5 |
| Msa0055540 | MtrunA17_Chr3g0102671 | 36.842 | 171 | 97 | 6 | 213 | 377 | 1 | 166 | 7.00e-21 | 90.5 |
| Msa0055540 | MtrunA17_Chr1g0161581 | 36.158 | 177 | 92 | 4 | 182 | 357 | 364 | 520 | 8.43e-19 | 88.6 |
| Msa0055540 | MtrunA17_Chr6g0462911 | 29.707 | 239 | 144 | 9 | 154 | 387 | 38 | 257 | 3.52e-16 | 79.0 |
| Msa0055540 | MtrunA17_Chr5g0398791 | 29.932 | 147 | 102 | 1 | 188 | 334 | 27 | 172 | 4.54e-16 | 75.9 |
| Msa0055540 | MtrunA17_Chr6g0462981 | 28.102 | 274 | 169 | 9 | 154 | 419 | 38 | 291 | 2.79e-14 | 73.2 |
| Msa0055540 | MtrunA17_Chr3g0133211 | 27.374 | 179 | 125 | 3 | 173 | 346 | 73 | 251 | 2.01e-13 | 71.2 |
| Msa0055540 | MtrunA17_Chr4g0041721 | 25.698 | 179 | 128 | 3 | 173 | 346 | 68 | 246 | 4.89e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055540 | AT5G11300.1 | 50.939 | 426 | 176 | 6 | 14 | 423 | 26 | 434 | 7.05e-135 | 394 |
| Msa0055540 | AT5G25380.4 | 49.528 | 424 | 194 | 8 | 13 | 423 | 25 | 441 | 1.79e-124 | 368 |
| Msa0055540 | AT5G25380.3 | 49.524 | 420 | 194 | 6 | 13 | 423 | 25 | 435 | 7.94e-124 | 366 |
| Msa0055540 | AT5G25380.1 | 49.524 | 420 | 194 | 6 | 13 | 423 | 25 | 435 | 7.94e-124 | 366 |
| Msa0055540 | AT1G80370.1 | 47.826 | 414 | 192 | 4 | 15 | 415 | 48 | 450 | 5.70e-122 | 362 |
| Msa0055540 | AT5G25380.2 | 49.380 | 403 | 187 | 5 | 13 | 407 | 25 | 418 | 3.90e-119 | 353 |
| Msa0055540 | AT1G15570.1 | 44.252 | 461 | 203 | 9 | 6 | 423 | 1 | 450 | 1.50e-115 | 345 |
| Msa0055540 | AT5G11300.2 | 48.352 | 364 | 156 | 5 | 14 | 362 | 26 | 372 | 8.18e-105 | 317 |
| Msa0055540 | AT1G44110.1 | 51.685 | 267 | 129 | 0 | 146 | 412 | 178 | 444 | 6.57e-97 | 298 |
| Msa0055540 | AT5G43080.1 | 50.923 | 271 | 133 | 0 | 148 | 418 | 73 | 343 | 1.64e-95 | 291 |
| Msa0055540 | AT1G47210.2 | 51.282 | 273 | 131 | 1 | 148 | 418 | 88 | 360 | 1.80e-93 | 286 |
| Msa0055540 | AT5G43080.2 | 50.923 | 271 | 128 | 1 | 148 | 418 | 73 | 338 | 2.39e-93 | 285 |
| Msa0055540 | AT1G77390.1 | 45.820 | 323 | 173 | 1 | 92 | 412 | 106 | 428 | 4.55e-92 | 285 |
| Msa0055540 | AT1G47230.1 | 49.638 | 276 | 133 | 2 | 147 | 418 | 80 | 353 | 1.51e-89 | 276 |
| Msa0055540 | AT1G47230.2 | 49.458 | 277 | 133 | 3 | 147 | 418 | 80 | 354 | 8.81e-88 | 271 |
| Msa0055540 | AT1G47220.1 | 50.185 | 271 | 129 | 2 | 148 | 414 | 42 | 310 | 8.49e-84 | 260 |
| Msa0055540 | AT1G76310.1 | 40.925 | 281 | 157 | 5 | 138 | 416 | 152 | 425 | 2.75e-61 | 205 |
| Msa0055540 | AT1G20610.1 | 39.706 | 272 | 156 | 4 | 146 | 416 | 160 | 424 | 7.30e-59 | 198 |
| Msa0055540 | AT1G76310.2 | 43.802 | 242 | 127 | 5 | 138 | 377 | 152 | 386 | 1.57e-56 | 191 |
| Msa0055540 | AT1G76310.3 | 37.217 | 309 | 157 | 6 | 138 | 416 | 152 | 453 | 3.25e-55 | 189 |
| Msa0055540 | AT5G06150.1 | 41.912 | 272 | 149 | 5 | 146 | 416 | 165 | 428 | 6.66e-55 | 188 |
| Msa0055540 | AT2G26760.1 | 37.764 | 331 | 186 | 11 | 81 | 403 | 47 | 365 | 8.16e-54 | 184 |
| Msa0055540 | AT3G11520.1 | 41.961 | 255 | 140 | 4 | 162 | 416 | 159 | 405 | 2.07e-51 | 178 |
| Msa0055540 | AT4G37490.1 | 37.248 | 298 | 166 | 8 | 132 | 416 | 128 | 417 | 2.47e-50 | 176 |
| Msa0055540 | AT2G17620.1 | 35.775 | 355 | 194 | 9 | 60 | 412 | 92 | 414 | 3.18e-50 | 176 |
| Msa0055540 | AT3G11520.2 | 44.843 | 223 | 115 | 4 | 162 | 384 | 159 | 373 | 1.97e-49 | 172 |
| Msa0055540 | AT4G35620.1 | 40.221 | 271 | 148 | 7 | 146 | 412 | 155 | 415 | 8.73e-49 | 172 |
| Msa0055540 | AT1G16330.1 | 37.647 | 255 | 152 | 3 | 162 | 416 | 395 | 642 | 4.44e-47 | 171 |
| Msa0055540 | AT4G35620.2 | 42.797 | 236 | 121 | 7 | 146 | 377 | 155 | 380 | 4.92e-45 | 160 |
| Msa0055540 | AT1G76310.4 | 45.251 | 179 | 95 | 3 | 138 | 314 | 152 | 329 | 1.07e-43 | 156 |
| Msa0055540 | AT5G06150.2 | 45.294 | 170 | 90 | 3 | 146 | 314 | 165 | 332 | 5.76e-38 | 140 |
| Msa0055540 | AT1G20590.1 | 43.312 | 157 | 83 | 2 | 221 | 377 | 63 | 213 | 2.01e-35 | 132 |
| Msa0055540 | AT1G47210.1 | 51.402 | 107 | 46 | 2 | 148 | 250 | 88 | 192 | 1.05e-29 | 114 |
| Msa0055540 | AT1G34460.9 | 36.095 | 169 | 85 | 4 | 146 | 313 | 241 | 387 | 1.35e-20 | 94.4 |
| Msa0055540 | AT1G34460.6 | 36.095 | 169 | 85 | 4 | 146 | 313 | 255 | 401 | 1.46e-20 | 94.0 |
| Msa0055540 | AT1G34460.3 | 36.095 | 169 | 85 | 4 | 146 | 313 | 255 | 401 | 1.46e-20 | 94.0 |
| Msa0055540 | AT1G34460.8 | 36.095 | 169 | 85 | 4 | 146 | 313 | 255 | 401 | 1.46e-20 | 94.0 |
| Msa0055540 | AT1G34460.1 | 36.095 | 169 | 85 | 4 | 146 | 313 | 255 | 401 | 1.46e-20 | 94.0 |
| Msa0055540 | AT1G34460.7 | 36.095 | 169 | 85 | 4 | 146 | 313 | 255 | 401 | 1.61e-20 | 94.0 |
| Msa0055540 | AT1G34460.2 | 36.095 | 169 | 85 | 4 | 146 | 313 | 252 | 398 | 1.83e-20 | 94.0 |
| Msa0055540 | AT1G34460.4 | 36.095 | 169 | 85 | 4 | 146 | 313 | 252 | 398 | 1.83e-20 | 94.0 |
| Msa0055540 | AT1G34460.5 | 36.095 | 169 | 85 | 4 | 146 | 313 | 255 | 401 | 1.85e-20 | 94.0 |
| Msa0055540 | AT1G70210.1 | 30.901 | 233 | 143 | 7 | 126 | 349 | 15 | 238 | 9.23e-16 | 78.6 |
| Msa0055540 | AT1G14750.1 | 31.892 | 185 | 113 | 5 | 171 | 351 | 365 | 540 | 1.47e-15 | 79.3 |
| Msa0055540 | AT1G14750.3 | 31.892 | 185 | 113 | 5 | 171 | 351 | 365 | 540 | 1.63e-15 | 79.0 |
| Msa0055540 | AT1G14750.2 | 31.892 | 185 | 113 | 5 | 171 | 351 | 197 | 372 | 1.70e-15 | 78.2 |
| Msa0055540 | AT1G14750.4 | 31.892 | 185 | 112 | 6 | 171 | 351 | 197 | 371 | 2.87e-14 | 74.7 |
Find 106 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGAACAAGCTGTTGTTAT+TGG | 0.143407 | 1_2:+10588802 | Msa0055540:CDS |
| CAAACAATACTCCTTATTTA+TGG | 0.152896 | 1_2:+10593579 | Msa0055540:three_prime_UTR |
| CTGCAAGGTTTCCATGTAAT+TGG | 0.188546 | 1_2:-10591100 | None:intergenic |
| AGTTAAAGGATTCTCCTATT+TGG | 0.207301 | 1_2:+10590859 | Msa0055540:CDS |
| CTCTTTCTTTGCATCCTCTT+TGG | 0.213831 | 1_2:-10590200 | None:intergenic |
| GGACATTGATTCGAAGTTAA+AGG | 0.247922 | 1_2:+10590845 | Msa0055540:CDS |
| TGAATACTAGTGTATATATC+AGG | 0.293341 | 1_2:-10590894 | None:intergenic |
| TGTTCATTATACCATAAATA+AGG | 0.300867 | 1_2:-10593590 | None:intergenic |
| TCCCGGCATGAGGGGAATTC+TGG | 0.318331 | 1_2:+10591134 | Msa0055540:CDS |
| TCAAGCTGACCTGGAATTCC+TGG | 0.325987 | 1_2:+10592759 | Msa0055540:CDS |
| AAAAGAGATTCCACCGGTTT+CGG | 0.329052 | 1_2:-10593294 | None:intergenic |
| TTGATGTCTCCTTGCAAGTT+TGG | 0.336175 | 1_2:+10590173 | Msa0055540:CDS |
| CACAGCAGATGCAGCTATCT+TGG | 0.343056 | 1_2:-10592839 | None:intergenic |
| AGCAAAATGGACAAAGAAAA+TGG | 0.345326 | 1_2:+10588724 | Msa0055540:CDS |
| ATTCCGTAGTTGTGACTTGT+AGG | 0.347282 | 1_2:+10593455 | Msa0055540:three_prime_UTR |
| ATATTGATAGGTATTGAAAA+TGG | 0.354850 | 1_2:+10592307 | Msa0055540:intron |
| ACTACGGAATAGTCCGTAAC+TGG | 0.377146 | 1_2:-10593442 | None:intergenic |
| AGAGACTAGAAAATGACTTT+AGG | 0.378294 | 1_2:+10593338 | Msa0055540:three_prime_UTR |
| TACAGTGAGGGAGAGCAAAA+TGG | 0.378343 | 1_2:+10588711 | Msa0055540:intron |
| CTGAGAAATGTCTTGATTGT+TGG | 0.391036 | 1_2:-10592371 | None:intergenic |
| GTTTCCATGTAATTGGCTAA+TGG | 0.400537 | 1_2:-10591093 | None:intergenic |
| AGTTATTTATACCTCTTGTC+TGG | 0.400903 | 1_2:-10592201 | None:intergenic |
| TGACTGGTTGAGGGTCCATC+TGG | 0.412265 | 1_2:-10592869 | None:intergenic |
| AATAGTTTGCCAGGAATTCC+AGG | 0.413734 | 1_2:-10592768 | None:intergenic |
| TATCTGAATCAAGATATATA+TGG | 0.415300 | 1_2:+10593363 | Msa0055540:three_prime_UTR |
| GGGGCATAAGAAGTCCAAAT+AGG | 0.432031 | 1_2:-10590873 | None:intergenic |
| AGCATTGAGACGACAGCCTT+TGG | 0.432531 | 1_2:-10593086 | None:intergenic |
| ACGGATGCTCTGACTGGTTG+AGG | 0.439625 | 1_2:-10592879 | None:intergenic |
| AATTCTGGTTGACTGGCTTG+TGG | 0.442775 | 1_2:+10591149 | Msa0055540:CDS |
| AAGCAACTGCAGCCTTCGTT+TGG | 0.443429 | 1_2:-10591606 | None:intergenic |
| GTTGCAAATCTATCAGTTCA+AGG | 0.445104 | 1_2:-10593057 | None:intergenic |
| TGAGGGGAATTCTGGTTGAC+TGG | 0.454644 | 1_2:+10591142 | Msa0055540:CDS |
| ACTAAGTGCCTCAGTTGGCT+TGG | 0.457791 | 1_2:+10590815 | Msa0055540:CDS |
| ACAGCAAGGTAAAGTGTGTC+TGG | 0.458805 | 1_2:-10591545 | None:intergenic |
| TCGTTTGGTAATCAAACGTT+GGG | 0.460508 | 1_2:-10591591 | None:intergenic |
| CTAAGTGCCTCAGTTGGCTT+GGG | 0.464985 | 1_2:+10590816 | Msa0055540:CDS |
| CTCAGTTGGCTTGGGAATTG+TGG | 0.470396 | 1_2:+10590824 | Msa0055540:CDS |
| CACAGAAGGTTGCACTTGCA+AGG | 0.472581 | 1_2:-10590266 | None:intergenic |
| GGCGAATTTGTCTCCGAAAC+CGG | 0.473905 | 1_2:+10593281 | Msa0055540:CDS |
| AATGAATAACAACAATTTGA+AGG | 0.474980 | 1_2:-10593419 | None:intergenic |
| TTTGTATAGTGCTCCAGAGT+TGG | 0.476724 | 1_2:-10593004 | None:intergenic |
| CGGATGCTCTGACTGGTTGA+GGG | 0.478583 | 1_2:-10592878 | None:intergenic |
| GTTGTTATTCATTCCAGTTA+CGG | 0.480686 | 1_2:+10593429 | Msa0055540:three_prime_UTR |
| TCCATTACACAGAAGAAAGA+AGG | 0.481135 | 1_2:+10590115 | Msa0055540:intron |
| GCAGACATAAATTTGATATG+TGG | 0.485594 | 1_2:+10590789 | Msa0055540:intron |
| TATGAAGAGATTTGTGCTCC+TGG | 0.491959 | 1_2:+10592140 | Msa0055540:CDS |
| GGTATTGAAAATGGAGAAAG+AGG | 0.497773 | 1_2:+10592316 | Msa0055540:intron |
| TCAGAGCTTATAATATATCA+TGG | 0.499026 | 1_2:-10588396 | None:intergenic |
| TGTAGGATGGTACCAACCTC+TGG | 0.500087 | 1_2:+10593472 | Msa0055540:three_prime_UTR |
| TCAGGTTGCTCAAGCTGACC+TGG | 0.500817 | 1_2:+10592750 | Msa0055540:intron |
| GAGTGTCCTGCATTGAGAGC+AGG | 0.501654 | 1_2:-10590297 | None:intergenic |
| ACCAGAATTCCCCTCATGCC+GGG | 0.504323 | 1_2:-10591135 | None:intergenic |
| AAACGAAGGCTGCAGTTGCT+TGG | 0.504335 | 1_2:+10591608 | Msa0055540:CDS |
| CTTGCAAGTGCAACCTTCTG+TGG | 0.514382 | 1_2:+10590267 | Msa0055540:CDS |
| AACCAGAATTCCCCTCATGC+CGG | 0.516850 | 1_2:-10591136 | None:intergenic |
| CAACAATCAAGACATTTCTC+AGG | 0.517270 | 1_2:+10592372 | Msa0055540:CDS |
| ACTCTCAACTCTCCAAATAC+AGG | 0.521458 | 1_2:+10590316 | Msa0055540:CDS |
| AGACCCACGGATGCTCTGAC+TGG | 0.522371 | 1_2:-10592885 | None:intergenic |
| TTAAATCTCTCCAGTGTGAA+AGG | 0.524126 | 1_2:+10591067 | Msa0055540:intron |
| CAGACATAAATTTGATATGT+GGG | 0.525262 | 1_2:+10590790 | Msa0055540:intron |
| TGGTAATCAAACGTTGGGAA+AGG | 0.528424 | 1_2:-10591586 | None:intergenic |
| TTATTTGCAGAATCCAACTC+TGG | 0.529754 | 1_2:+10592991 | Msa0055540:intron |
| TTTGGTTGTCCAAACTTGCA+AGG | 0.533560 | 1_2:-10590182 | None:intergenic |
| GCTCTGCTAAATAGTTTGCC+AGG | 0.535403 | 1_2:-10592777 | None:intergenic |
| AGTGTCCTGCATTGAGAGCA+GGG | 0.537519 | 1_2:-10590296 | None:intergenic |
| CTGCTGTGTTACTTGCCAGA+TGG | 0.539850 | 1_2:+10592854 | Msa0055540:CDS |
| ATCAACTTCTGAAGCTACAT+TGG | 0.548064 | 1_2:-10590155 | None:intergenic |
| TTCGTTTGGTAATCAAACGT+TGG | 0.551985 | 1_2:-10591592 | None:intergenic |
| GAATACTAGTGTATATATCA+GGG | 0.553135 | 1_2:-10590893 | None:intergenic |
| AGTAGCACAAACTTCTTCCA+AGG | 0.554621 | 1_2:+10592493 | Msa0055540:CDS |
| CGTAGTTGTGACTTGTAGGA+TGG | 0.555393 | 1_2:+10593459 | Msa0055540:three_prime_UTR |
| TTGCAGCAAGACATCACTCC+CGG | 0.557538 | 1_2:+10591117 | Msa0055540:CDS |
| AAGAAAATGGTGTGAATGTG+AGG | 0.565412 | 1_2:+10588737 | Msa0055540:CDS |
| TCTGGTTGACTGGCTTGTGG+AGG | 0.565987 | 1_2:+10591152 | Msa0055540:CDS |
| GCAGATGCAGCTATCTTGGA+AGG | 0.568316 | 1_2:-10592835 | None:intergenic |
| TCAACCAGTCAGAGCATCCG+TGG | 0.573235 | 1_2:+10592881 | Msa0055540:CDS |
| GATCAAGAAGCACCAGAGGT+TGG | 0.576746 | 1_2:-10593484 | None:intergenic |
| AAGTACAGAAATGAAGTGTG+TGG | 0.581503 | 1_2:-10588324 | None:intergenic |
| AGACATCACTCCCGGCATGA+GGG | 0.583884 | 1_2:+10591125 | Msa0055540:CDS |
| AAGACATCACTCCCGGCATG+AGG | 0.589789 | 1_2:+10591124 | Msa0055540:CDS |
| GAGGCCATTAGCCAATTACA+TGG | 0.590812 | 1_2:+10591089 | Msa0055540:CDS |
| ATGTGAGGGTGACTCGAGCA+AGG | 0.595779 | 1_2:+10588752 | Msa0055540:CDS |
| CAAGATATATATGGAAGGTG+AGG | 0.602632 | 1_2:+10593372 | Msa0055540:three_prime_UTR |
| GGGAGTGATGTCTTGCTGCA+AGG | 0.604746 | 1_2:-10591115 | None:intergenic |
| TCCTAGAAAAGAGATTCCAC+CGG | 0.607987 | 1_2:-10593300 | None:intergenic |
| GACATCACTCCCGGCATGAG+GGG | 0.614351 | 1_2:+10591126 | Msa0055540:CDS |
| AGTAGATCAAGAAGCACCAG+AGG | 0.621197 | 1_2:-10593488 | None:intergenic |
| GATCAATGAGATTCACAGCA+AGG | 0.622155 | 1_2:-10591559 | None:intergenic |
| GCAAGTTTGGACAACCAAAG+AGG | 0.622371 | 1_2:+10590186 | Msa0055540:CDS |
| GATTTGCAACTTAACACCAA+AGG | 0.622706 | 1_2:+10593070 | Msa0055540:CDS |
| TAATACATACTCCAGACAAG+AGG | 0.630206 | 1_2:+10592190 | Msa0055540:CDS |
| TGTCCTGCATTGAGAGCAGG+GGG | 0.630645 | 1_2:-10590294 | None:intergenic |
| TGTGAGGGTGACTCGAGCAA+GGG | 0.633321 | 1_2:+10588753 | Msa0055540:CDS |
| TGAATCAAGATATATATGGA+AGG | 0.633673 | 1_2:+10593367 | Msa0055540:three_prime_UTR |
| AACGTTTGATTACCAAACGA+AGG | 0.634318 | 1_2:+10591594 | Msa0055540:CDS |
| CCTATGACAGTTCAATAGTG+TGG | 0.639183 | 1_2:+10593260 | Msa0055540:intron |
| CACTAGTATTCATGTCAGAG+AGG | 0.642881 | 1_2:+10590905 | Msa0055540:CDS |
| CATCCTACAAGTCACAACTA+CGG | 0.643741 | 1_2:-10593458 | None:intergenic |
| CACAATTCCCAAGCCAACTG+AGG | 0.645149 | 1_2:-10590823 | None:intergenic |
| GGGAAACTAAGTGCCTCAGT+TGG | 0.645487 | 1_2:+10590810 | Msa0055540:CDS |
| GTGTCCTGCATTGAGAGCAG+GGG | 0.656805 | 1_2:-10590295 | None:intergenic |
| AATCTCTCCAGTGTGAAAGG+AGG | 0.664729 | 1_2:+10591070 | Msa0055540:intron |
| CAACCAGTCAGAGCATCCGT+GGG | 0.669646 | 1_2:+10592882 | Msa0055540:CDS |
| GAATTTGTCTCCGAAACCGG+TGG | 0.670360 | 1_2:+10593284 | Msa0055540:CDS |
| AATACTAGTGTATATATCAG+GGG | 0.674606 | 1_2:-10590892 | None:intergenic |
| AGAAAATGGTGTGAATGTGA+GGG | 0.707664 | 1_2:+10588738 | Msa0055540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATTATTATTATTATTA+TGG | + | chr1_2:10588926-10588945 | Msa0055540:intron | 0.0% |
| !! | GATAAATATTATATAATTCA+AGG | - | chr1_2:10588627-10588646 | None:intergenic | 10.0% |
| !! | ATTATTATTATTATTGAGAT+TGG | + | chr1_2:10588960-10588979 | Msa0055540:intron | 10.0% |
| !! | AAAATATATACATAATTTCT+TGG | + | chr1_2:10589324-10589343 | Msa0055540:intron | 10.0% |
| !!! | TATGAATTGAAATAATTTGT+AGG | + | chr1_2:10589020-10589039 | Msa0055540:intron | 15.0% |
| !! | AAATTCCTTAGTAATTTAAA+TGG | + | chr1_2:10589189-10589208 | Msa0055540:intron | 15.0% |
| !! | AGTTACAAATTAATTTAAAC+AGG | - | chr1_2:10590077-10590096 | None:intergenic | 15.0% |
| !!! | TTAATTTGTAACTATTGATT+TGG | + | chr1_2:10590084-10590103 | Msa0055540:intron | 15.0% |
| !!! | TTGTTATTTTTTATCTTGAT+TGG | + | chr1_2:10590761-10590780 | Msa0055540:intron | 15.0% |
| !!! | GTGTTTTTTTTTTTTTCATT+TGG | + | chr1_2:10590943-10590962 | Msa0055540:intron | 15.0% |
| !! | CATAATCACTAATATAATAA+GGG | - | chr1_2:10591251-10591270 | None:intergenic | 15.0% |
| !!! | ACATTTCATATTTTTAAACT+TGG | - | chr1_2:10591822-10591841 | None:intergenic | 15.0% |
| !!! | GTTGAATTTTTATAACAATG+TGG | - | chr1_2:10588536-10588555 | None:intergenic | 20.0% |
| !!! | ATAAAAACAAGCATTTTGTA+TGG | + | chr1_2:10589068-10589087 | Msa0055540:intron | 20.0% |
| !! | GTTAACCATTTAAATTACTA+AGG | - | chr1_2:10589197-10589216 | None:intergenic | 20.0% |
| !! | AGTAATTTAAATGGTTAACA+TGG | + | chr1_2:10589198-10589217 | Msa0055540:intron | 20.0% |
| !!! | TTTTTATTACGTACAATAGA+TGG | + | chr1_2:10589232-10589251 | Msa0055540:intron | 20.0% |
| !!! | ATATTTTAACACAATTTGAG+TGG | - | chr1_2:10589311-10589330 | None:intergenic | 20.0% |
| !! | AACCAACAAATGAATATAAA+AGG | - | chr1_2:10589468-10589487 | None:intergenic | 20.0% |
| !! | TTTAGTAAAACTTCAAATGA+TGG | - | chr1_2:10589688-10589707 | None:intergenic | 20.0% |
| !!! | AATGATTGTATACTTTGAAA+GGG | + | chr1_2:10589732-10589751 | Msa0055540:intron | 20.0% |
| !!! | AATGAGATTTTGTAAATCAT+TGG | + | chr1_2:10590025-10590044 | Msa0055540:intron | 20.0% |
| !! | AAATGAAAAATACCTGTATT+TGG | - | chr1_2:10590331-10590350 | None:intergenic | 20.0% |
| !!! | TACAGGTATTTTTCATTTAT+TGG | + | chr1_2:10590333-10590352 | Msa0055540:intron | 20.0% |
| !! | TTTCATTTATTGGATATAAC+TGG | + | chr1_2:10590343-10590362 | Msa0055540:intron | 20.0% |
| !! | CTAATACTATGAATCTATAA+TGG | - | chr1_2:10591184-10591203 | None:intergenic | 20.0% |
| !! | GCATAATCACTAATATAATA+AGG | - | chr1_2:10591252-10591271 | None:intergenic | 20.0% |
| !!! | AATTGAATTGCATCAATTTT+TGG | + | chr1_2:10591455-10591474 | Msa0055540:intron | 20.0% |
| !!! | ATATTGATAGGTATTGAAAA+TGG | + | chr1_2:10592307-10592326 | Msa0055540:intron | 20.0% |
| !!! | GTAATTTTTTTTCTGTTATC+AGG | + | chr1_2:10592732-10592751 | Msa0055540:intron | 20.0% |
| !! | ATGTGAATCTAATTAGATTT+AGG | - | chr1_2:10592965-10592984 | None:intergenic | 20.0% |
| !! | TATCTGAATCAAGATATATA+TGG | + | chr1_2:10593363-10593382 | Msa0055540:three_prime_UTR | 20.0% |
| !! | AATGAATAACAACAATTTGA+AGG | - | chr1_2:10593422-10593441 | None:intergenic | 20.0% |
| !! | TGTTCATTATACCATAAATA+AGG | - | chr1_2:10593593-10593612 | None:intergenic | 20.0% |
| ! | TCAGAGCTTATAATATATCA+TGG | - | chr1_2:10588399-10588418 | None:intergenic | 25.0% |
| ! | AATCATAACATAGAAGAAAG+TGG | - | chr1_2:10588461-10588480 | None:intergenic | 25.0% |
| !! | TACTCATACATCAAATTTTG+AGG | + | chr1_2:10588870-10588889 | Msa0055540:CDS | 25.0% |
| !!! | GAATTTTGATGTCAAACTTA+TGG | - | chr1_2:10589175-10589194 | None:intergenic | 25.0% |
| ! | CAACAAATGAATATAAAAGG+TGG | - | chr1_2:10589465-10589484 | None:intergenic | 25.0% |
| !! | CACCTTTTATATTCATTTGT+TGG | + | chr1_2:10589463-10589482 | Msa0055540:intron | 25.0% |
| ! | TGTTGCATATATAAAAGAGT+TGG | + | chr1_2:10589532-10589551 | Msa0055540:intron | 25.0% |
| !! | TCTTAAGGCATTAGTTATAT+GGG | - | chr1_2:10589558-10589577 | None:intergenic | 25.0% |
| !! | ATCTTAAGGCATTAGTTATA+TGG | - | chr1_2:10589559-10589578 | None:intergenic | 25.0% |
| !! | TAACTAATGCCTTAAGATTT+TGG | + | chr1_2:10589561-10589580 | Msa0055540:intron | 25.0% |
| !! | AACTAATGCCTTAAGATTTT+GGG | + | chr1_2:10589562-10589581 | Msa0055540:intron | 25.0% |
| ! | AGTATACAATCATTGAGTTT+AGG | - | chr1_2:10589726-10589745 | None:intergenic | 25.0% |
| ! | CAATGATTGTATACTTTGAA+AGG | + | chr1_2:10589731-10589750 | Msa0055540:intron | 25.0% |
| !! | TATACTTTGAAAGGGAAAAA+AGG | + | chr1_2:10589740-10589759 | Msa0055540:intron | 25.0% |
| !! | AAAAGGCAATTATGTTTTCA+TGG | + | chr1_2:10589757-10589776 | Msa0055540:intron | 25.0% |
| !! | ATTTAAGATTAGTCCATGTT+TGG | - | chr1_2:10589793-10589812 | None:intergenic | 25.0% |
| !!! | TCGCAATATAATGGTTTTAA+AGG | - | chr1_2:10589932-10589951 | None:intergenic | 25.0% |
| ! | AGTCAAATAGTTCTTAATCA+TGG | - | chr1_2:10589976-10589995 | None:intergenic | 25.0% |
| !! | CTCTATATTTTGTCCATAAA+AGG | + | chr1_2:10589994-10590013 | Msa0055540:intron | 25.0% |
| !! | TCATTCAATTAGTCCTTTTA+TGG | - | chr1_2:10590010-10590029 | None:intergenic | 25.0% |
| ! | TTGAATGTGAAATGAGAAAT+AGG | - | chr1_2:10590529-10590548 | None:intergenic | 25.0% |
| ! | CAGACATAAATTTGATATGT+GGG | + | chr1_2:10590790-10590809 | Msa0055540:intron | 25.0% |
| ! | AATACTAGTGTATATATCAG+GGG | - | chr1_2:10590895-10590914 | None:intergenic | 25.0% |
| ! | GAATACTAGTGTATATATCA+GGG | - | chr1_2:10590896-10590915 | None:intergenic | 25.0% |
| ! | TGAATACTAGTGTATATATC+AGG | - | chr1_2:10590897-10590916 | None:intergenic | 25.0% |
| !!! | ATCAATTTTTGGCTGTTTAA+TGG | + | chr1_2:10591466-10591485 | Msa0055540:intron | 25.0% |
| !!! | GCTTTGTTATATTCTTTTTC+AGG | + | chr1_2:10591499-10591518 | Msa0055540:intron | 25.0% |
| !! | TACTTTGTAATTTTCCTAGT+TGG | + | chr1_2:10591665-10591684 | Msa0055540:intron | 25.0% |
| ! | TCCTTAAAGTCAAATTTACA+CGG | + | chr1_2:10591725-10591744 | Msa0055540:intron | 25.0% |
| !!! | GTGAATTCCTGATATTTTTT+CGG | + | chr1_2:10591879-10591898 | Msa0055540:intron | 25.0% |
| ! | AATAATAGCAAAGCAAAACT+TGG | - | chr1_2:10591921-10591940 | None:intergenic | 25.0% |
| !! | CATTCATGATCAAAATTTTG+TGG | - | chr1_2:10591996-10592015 | None:intergenic | 25.0% |
| !!! | TCTTCTTGATAAGTTGATAA+CGG | - | chr1_2:10592074-10592093 | None:intergenic | 25.0% |
| !!! | TTCTTTTTTTCTTTCTTTCG+TGG | + | chr1_2:10592106-10592125 | Msa0055540:intron | 25.0% |
| !!! | CAAGAGGTATAAATAACTTT+TGG | + | chr1_2:10592206-10592225 | Msa0055540:intron | 25.0% |
| !! | GCAATTTAGTTTAAGCTTAA+TGG | + | chr1_2:10592430-10592449 | Msa0055540:intron | 25.0% |
| !!! | TTCGGATATTTTAAATACCT+TGG | - | chr1_2:10592513-10592532 | None:intergenic | 25.0% |
| ! | TAATGAAAGAGCAATAGAAA+AGG | - | chr1_2:10593150-10593169 | None:intergenic | 25.0% |
| ! | AAAGGGAAACACATTTAATT+TGG | - | chr1_2:10593204-10593223 | None:intergenic | 25.0% |
| ! | AGCTTCTTCATTATGTTAAA+GGG | - | chr1_2:10593221-10593240 | None:intergenic | 25.0% |
| ! | TAGCTTCTTCATTATGTTAA+AGG | - | chr1_2:10593222-10593241 | None:intergenic | 25.0% |
| ! | TGAATCAAGATATATATGGA+AGG | + | chr1_2:10593367-10593386 | Msa0055540:three_prime_UTR | 25.0% |
| !! | CAAACAATACTCCTTATTTA+TGG | + | chr1_2:10593579-10593598 | Msa0055540:three_prime_UTR | 25.0% |
| AGCAAAATGGACAAAGAAAA+TGG | + | chr1_2:10588724-10588743 | Msa0055540:CDS | 30.0% | |
| AATGAACAAGCTGTTGTTAT+TGG | + | chr1_2:10588802-10588821 | Msa0055540:CDS | 30.0% | |
| ! | ATGTGATTTTGCAGAAATGT+TGG | - | chr1_2:10588842-10588861 | None:intergenic | 30.0% |
| AATGGTTAACATGGTTCAAA+TGG | + | chr1_2:10589207-10589226 | Msa0055540:intron | 30.0% | |
| ATGGTTAACATGGTTCAAAT+GGG | + | chr1_2:10589208-10589227 | Msa0055540:intron | 30.0% | |
| ACGTACAATAGATGGTTAAA+CGG | + | chr1_2:10589240-10589259 | Msa0055540:intron | 30.0% | |
| AACACAATTTGAGTGGTTAA+TGG | - | chr1_2:10589304-10589323 | None:intergenic | 30.0% | |
| TTGTAGTTAATTGTGTTGAG+TGG | + | chr1_2:10589422-10589441 | Msa0055540:intron | 30.0% | |
| !! | AGTTGATGGTTAATGATGTT+GGG | - | chr1_2:10589653-10589672 | None:intergenic | 30.0% |
| !! | AAGTTGATGGTTAATGATGT+TGG | - | chr1_2:10589654-10589673 | None:intergenic | 30.0% |
| !! | GGTTAATTACGTTAAGTTGA+TGG | - | chr1_2:10589667-10589686 | None:intergenic | 30.0% |
| TGGATAATCTTAACCAAACA+TGG | + | chr1_2:10589777-10589796 | Msa0055540:intron | 30.0% | |
| TCTTAAATCTGTGTATGAGT+TGG | + | chr1_2:10589805-10589824 | Msa0055540:intron | 30.0% | |
| TTTGATATTGCATCAAAACG+CGG | + | chr1_2:10589874-10589893 | Msa0055540:intron | 30.0% | |
| ATATAACTGGTATGCACTAT+CGG | + | chr1_2:10590356-10590375 | Msa0055540:intron | 30.0% | |
| ATTACATGATGAGATGTGAT+TGG | + | chr1_2:10590459-10590478 | Msa0055540:intron | 30.0% | |
| TAGTAATTGCTAACTGAACA+AGG | + | chr1_2:10590619-10590638 | Msa0055540:intron | 30.0% | |
| GCAGACATAAATTTGATATG+TGG | + | chr1_2:10590789-10590808 | Msa0055540:intron | 30.0% | |
| AGTTAAAGGATTCTCCTATT+TGG | + | chr1_2:10590859-10590878 | Msa0055540:CDS | 30.0% | |
| ! | GATGTTTTCATAAGCTATCT+CGG | + | chr1_2:10591298-10591317 | Msa0055540:intron | 30.0% |
| !! | AAATAAGCTGAAAGTGCTTA+TGG | + | chr1_2:10591332-10591351 | Msa0055540:intron | 30.0% |
| AACATACTAAGAGACTGTTT+AGG | - | chr1_2:10591387-10591406 | None:intergenic | 30.0% | |
| ! | ACCGTGTAAATTTGACTTTA+AGG | - | chr1_2:10591729-10591748 | None:intergenic | 30.0% |
| CAAAGCAAAACTTGGTAAAT+CGG | - | chr1_2:10591913-10591932 | None:intergenic | 30.0% | |
| ! | TACTCTTTTCTAACTCTTCA+TGG | - | chr1_2:10591950-10591969 | None:intergenic | 30.0% |
| AGTTATTTATACCTCTTGTC+TGG | - | chr1_2:10592204-10592223 | None:intergenic | 30.0% | |
| !! | GAGTTTGTTTGTTTTCCTAA+TGG | - | chr1_2:10592703-10592722 | None:intergenic | 30.0% |
| TGAAAAATATCAACACCAGA+AGG | + | chr1_2:10593114-10593133 | Msa0055540:CDS | 30.0% | |
| AAAGGAAAATTCTAACCTTC+TGG | - | chr1_2:10593132-10593151 | None:intergenic | 30.0% | |
| AGAGACTAGAAAATGACTTT+AGG | + | chr1_2:10593338-10593357 | Msa0055540:three_prime_UTR | 30.0% | |
| ! | GTTGTTATTCATTCCAGTTA+CGG | + | chr1_2:10593429-10593448 | Msa0055540:three_prime_UTR | 30.0% |
| AAGTACAGAAATGAAGTGTG+TGG | - | chr1_2:10588327-10588346 | None:intergenic | 35.0% | |
| ATATTGTGACTGATACAGTG+AGG | + | chr1_2:10588698-10588717 | Msa0055540:intron | 35.0% | |
| TATTGTGACTGATACAGTGA+GGG | + | chr1_2:10588699-10588718 | Msa0055540:intron | 35.0% | |
| AAGAAAATGGTGTGAATGTG+AGG | + | chr1_2:10588737-10588756 | Msa0055540:CDS | 35.0% | |
| AGAAAATGGTGTGAATGTGA+GGG | + | chr1_2:10588738-10588757 | Msa0055540:CDS | 35.0% | |
| GCACATTTGAACTCAAATCA+TGG | - | chr1_2:10589377-10589396 | None:intergenic | 35.0% | |
| AGTTAATTGTGTTGAGTGGA+TGG | + | chr1_2:10589426-10589445 | Msa0055540:intron | 35.0% | |
| ! | TTTGTTGGTTGAAGTTTGTG+CGG | + | chr1_2:10589478-10589497 | Msa0055540:intron | 35.0% |
| ! | TAATGCCTTAAGATTTTGGG+TGG | + | chr1_2:10589565-10589584 | Msa0055540:intron | 35.0% |
| ATGCTACAAGACCACAATTA+AGG | - | chr1_2:10589605-10589624 | None:intergenic | 35.0% | |
| !! | TAATTGTGGTCTTGTAGCAT+TGG | + | chr1_2:10589605-10589624 | Msa0055540:intron | 35.0% |
| !! | GTTGATGGTTAATGATGTTG+GGG | - | chr1_2:10589652-10589671 | None:intergenic | 35.0% |
| TGGTATCACAATGATGATTG+TGG | - | chr1_2:10589900-10589919 | None:intergenic | 35.0% | |
| TCCATTACACAGAAGAAAGA+AGG | + | chr1_2:10590115-10590134 | Msa0055540:intron | 35.0% | |
| ACCTTCTTTCTTCTGTGTAA+TGG | - | chr1_2:10590119-10590138 | None:intergenic | 35.0% | |
| !! | ATCAACTTCTGAAGCTACAT+TGG | - | chr1_2:10590158-10590177 | None:intergenic | 35.0% |
| TGCTAGTAGCTTCTAATAGT+AGG | - | chr1_2:10590718-10590737 | None:intergenic | 35.0% | |
| !! | GGACATTGATTCGAAGTTAA+AGG | + | chr1_2:10590845-10590864 | Msa0055540:CDS | 35.0% |
| TTAAATCTCTCCAGTGTGAA+AGG | + | chr1_2:10591067-10591086 | Msa0055540:intron | 35.0% | |
| GTTTCCATGTAATTGGCTAA+TGG | - | chr1_2:10591096-10591115 | None:intergenic | 35.0% | |
| ! | GTTGCTTTGTCTAAGAAACA+AGG | - | chr1_2:10591414-10591433 | None:intergenic | 35.0% |
| ! | TCGTTTGGTAATCAAACGTT+GGG | - | chr1_2:10591594-10591613 | None:intergenic | 35.0% |
| ! | TTCGTTTGGTAATCAAACGT+TGG | - | chr1_2:10591595-10591614 | None:intergenic | 35.0% |
| AACGTTTGATTACCAAACGA+AGG | + | chr1_2:10591594-10591613 | Msa0055540:CDS | 35.0% | |
| AACTTGCATCTGACATAATC+AGG | - | chr1_2:10591692-10591711 | None:intergenic | 35.0% | |
| TTATGTCAGATGCAAGTTCT+TGG | + | chr1_2:10591694-10591713 | Msa0055540:intron | 35.0% | |
| AGTTAGTTAATCAGAACCGT+TGG | + | chr1_2:10591754-10591773 | Msa0055540:intron | 35.0% | |
| AATGTCTGATCTTCATCGAA+CGG | + | chr1_2:10591837-10591856 | Msa0055540:intron | 35.0% | |
| TTGCTGACCGAAAAAATATC+AGG | - | chr1_2:10591889-10591908 | None:intergenic | 35.0% | |
| !! | GATAACGGAGAAAAAGAAGA+CGG | - | chr1_2:10592059-10592078 | None:intergenic | 35.0% |
| ACACAAAAATCTTCAACTCC+AGG | - | chr1_2:10592161-10592180 | None:intergenic | 35.0% | |
| TAATACATACTCCAGACAAG+AGG | + | chr1_2:10592190-10592209 | Msa0055540:CDS | 35.0% | |
| !! | CGTTGACTCTTGATATTGAT+AGG | + | chr1_2:10592295-10592314 | Msa0055540:intron | 35.0% |
| ! | GGTATTGAAAATGGAGAAAG+AGG | + | chr1_2:10592316-10592335 | Msa0055540:intron | 35.0% |
| CTGAGAAATGTCTTGATTGT+TGG | - | chr1_2:10592374-10592393 | None:intergenic | 35.0% | |
| CAACAATCAAGACATTTCTC+AGG | + | chr1_2:10592372-10592391 | Msa0055540:CDS | 35.0% | |
| GGAACTATAACCATCTTCTT+TGG | + | chr1_2:10592451-10592470 | Msa0055540:intron | 35.0% | |
| !!! | TCATGCTTATTTTGACCACA+GGG | - | chr1_2:10592543-10592562 | None:intergenic | 35.0% |
| !!! | TTCATGCTTATTTTGACCAC+AGG | - | chr1_2:10592544-10592563 | None:intergenic | 35.0% |
| AGCACTTCTATCATTCCATT+AGG | + | chr1_2:10592685-10592704 | Msa0055540:intron | 35.0% | |
| TTATTTGCAGAATCCAACTC+TGG | + | chr1_2:10592991-10593010 | Msa0055540:intron | 35.0% | |
| GTTGCAAATCTATCAGTTCA+AGG | - | chr1_2:10593060-10593079 | None:intergenic | 35.0% | |
| GATTTGCAACTTAACACCAA+AGG | + | chr1_2:10593070-10593089 | Msa0055540:CDS | 35.0% | |
| TCATTAACCTATTCTCTCTG+TGG | + | chr1_2:10593164-10593183 | Msa0055540:intron | 35.0% | |
| AGTTTAACCACAGAGAGAAT+AGG | - | chr1_2:10593174-10593193 | None:intergenic | 35.0% | |
| AATGAAGAAGCTAATGACAG+TGG | + | chr1_2:10593229-10593248 | Msa0055540:intron | 35.0% | |
| CAAGATATATATGGAAGGTG+AGG | + | chr1_2:10593372-10593391 | Msa0055540:three_prime_UTR | 35.0% | |
| CATCTCCACCCAAAATCTTA+AGG | - | chr1_2:10589573-10589592 | None:intergenic | 40.0% | |
| !! | TAAGATTTTGGGTGGAGATG+CGG | + | chr1_2:10589573-10589592 | Msa0055540:intron | 40.0% |
| !! | GTGTATGAGTTGGTCAGAAT+AGG | + | chr1_2:10589815-10589834 | Msa0055540:intron | 40.0% |
| GTCAGAATAGGCCTAAATTG+CGG | + | chr1_2:10589827-10589846 | Msa0055540:intron | 40.0% | |
| CGATTGTGGTCGCAATATAA+TGG | - | chr1_2:10589941-10589960 | None:intergenic | 40.0% | |
| TTGATGTCTCCTTGCAAGTT+TGG | + | chr1_2:10590173-10590192 | Msa0055540:CDS | 40.0% | |
| TTTGGTTGTCCAAACTTGCA+AGG | - | chr1_2:10590185-10590204 | None:intergenic | 40.0% | |
| CTCTTTCTTTGCATCCTCTT+TGG | - | chr1_2:10590203-10590222 | None:intergenic | 40.0% | |
| ACTCTCAACTCTCCAAATAC+AGG | + | chr1_2:10590316-10590335 | Msa0055540:CDS | 40.0% | |
| CACTAGTATTCATGTCAGAG+AGG | + | chr1_2:10590905-10590924 | Msa0055540:CDS | 40.0% | |
| CTGCAAGGTTTCCATGTAAT+TGG | - | chr1_2:10591103-10591122 | None:intergenic | 40.0% | |
| GATCAATGAGATTCACAGCA+AGG | - | chr1_2:10591562-10591581 | None:intergenic | 40.0% | |
| TGGTAATCAAACGTTGGGAA+AGG | - | chr1_2:10591589-10591608 | None:intergenic | 40.0% | |
| TGACATAATCAGGACCAACT+AGG | - | chr1_2:10591682-10591701 | None:intergenic | 40.0% | |
| TATGAAGAGATTTGTGCTCC+TGG | + | chr1_2:10592140-10592159 | Msa0055540:CDS | 40.0% | |
| !! | AACCATCTTCTTTGGCTTTC+AGG | + | chr1_2:10592459-10592478 | Msa0055540:intron | 40.0% |
| AGTAGCACAAACTTCTTCCA+AGG | + | chr1_2:10592493-10592512 | Msa0055540:CDS | 40.0% | |
| !!! | TATTTTGACCACAGGGAATC+TGG | - | chr1_2:10592536-10592555 | None:intergenic | 40.0% |
| TCTAATGAGATCAGAACCGA+TGG | + | chr1_2:10592565-10592584 | Msa0055540:intron | 40.0% | |
| ! | GAAGTGCTCTATGAAGAAAC+TGG | - | chr1_2:10592673-10592692 | None:intergenic | 40.0% |
| ! | AATAGTTTGCCAGGAATTCC+AGG | - | chr1_2:10592771-10592790 | None:intergenic | 40.0% |
| AGTTAATGTTCACAGACCCA+CGG | - | chr1_2:10592901-10592920 | None:intergenic | 40.0% | |
| TTTGTATAGTGCTCCAGAGT+TGG | - | chr1_2:10593007-10593026 | None:intergenic | 40.0% | |
| CCACACTATTGAACTGTCAT+AGG | - | chr1_2:10593263-10593282 | None:intergenic | 40.0% | |
| CCTATGACAGTTCAATAGTG+TGG | + | chr1_2:10593260-10593279 | Msa0055540:intron | 40.0% | |
| !! | AAAAGAGATTCCACCGGTTT+CGG | - | chr1_2:10593297-10593316 | None:intergenic | 40.0% |
| TCCTAGAAAAGAGATTCCAC+CGG | - | chr1_2:10593303-10593322 | None:intergenic | 40.0% | |
| ! | ATTCCGTAGTTGTGACTTGT+AGG | + | chr1_2:10593455-10593474 | Msa0055540:three_prime_UTR | 40.0% |
| CATCCTACAAGTCACAACTA+CGG | - | chr1_2:10593461-10593480 | None:intergenic | 40.0% | |
| TACAGTGAGGGAGAGCAAAA+TGG | + | chr1_2:10588711-10588730 | Msa0055540:intron | 45.0% | |
| !! | AGCAAGGGCTAGAGTTTTGA+AGG | + | chr1_2:10588768-10588787 | Msa0055540:CDS | 45.0% |
| TGCGGTGTCTACCTTAATTG+TGG | + | chr1_2:10589591-10589610 | Msa0055540:intron | 45.0% | |
| TTAATGATGTTGGGGAGTCG+GGG | - | chr1_2:10589644-10589663 | None:intergenic | 45.0% | |
| GTTAATGATGTTGGGGAGTC+GGG | - | chr1_2:10589645-10589664 | None:intergenic | 45.0% | |
| GGTTAATGATGTTGGGGAGT+CGG | - | chr1_2:10589646-10589665 | None:intergenic | 45.0% | |
| !!! | GGTTTTAAAGGTCTCGACAG+TGG | - | chr1_2:10589920-10589939 | None:intergenic | 45.0% |
| GCAAGTTTGGACAACCAAAG+AGG | + | chr1_2:10590186-10590205 | Msa0055540:CDS | 45.0% | |
| GGGGCATAAGAAGTCCAAAT+AGG | - | chr1_2:10590876-10590895 | None:intergenic | 45.0% | |
| AATCTCTCCAGTGTGAAAGG+AGG | + | chr1_2:10591070-10591089 | Msa0055540:intron | 45.0% | |
| GAGGCCATTAGCCAATTACA+TGG | + | chr1_2:10591089-10591108 | Msa0055540:CDS | 45.0% | |
| !! | AATTCTGGTTGACTGGCTTG+TGG | + | chr1_2:10591149-10591168 | Msa0055540:CDS | 45.0% |
| AAGCTATCTCGGTGAGCTTA+TGG | + | chr1_2:10591309-10591328 | Msa0055540:intron | 45.0% | |
| ACAGCAAGGTAAAGTGTGTC+TGG | - | chr1_2:10591548-10591567 | None:intergenic | 45.0% | |
| ATTCACCGCAGTCAGTAAGT+TGG | - | chr1_2:10591865-10591884 | None:intergenic | 45.0% | |
| CTCCTGAAAGCCAAAGAAGA+TGG | - | chr1_2:10592464-10592483 | None:intergenic | 45.0% | |
| !! | CATCTTCTTTGGCTTTCAGG+AGG | + | chr1_2:10592462-10592481 | Msa0055540:intron | 45.0% |
| GTGAACCAGTCTTGATCCAT+CGG | - | chr1_2:10592584-10592603 | None:intergenic | 45.0% | |
| GCTCTATGAAGAAACTGGCA+CGG | - | chr1_2:10592668-10592687 | None:intergenic | 45.0% | |
| ! | GCTCTGCTAAATAGTTTGCC+AGG | - | chr1_2:10592780-10592799 | None:intergenic | 45.0% |
| ! | ACCGGTGGAATCTCTTTTCT+AGG | + | chr1_2:10593299-10593318 | Msa0055540:CDS | 45.0% |
| ACTACGGAATAGTCCGTAAC+TGG | - | chr1_2:10593445-10593464 | None:intergenic | 45.0% | |
| ! | CGTAGTTGTGACTTGTAGGA+TGG | + | chr1_2:10593459-10593478 | Msa0055540:three_prime_UTR | 45.0% |
| !! | AGTAGATCAAGAAGCACCAG+AGG | - | chr1_2:10593491-10593510 | None:intergenic | 45.0% |
| TAATGATGTTGGGGAGTCGG+GGG | - | chr1_2:10589643-10589662 | None:intergenic | 50.0% | |
| CTGCAACTGTGCCGCAATTT+AGG | - | chr1_2:10589841-10589860 | None:intergenic | 50.0% | |
| GGTCTGCAAAGTTGCGATTG+TGG | - | chr1_2:10589955-10589974 | None:intergenic | 50.0% | |
| CACAGAAGGTTGCACTTGCA+AGG | - | chr1_2:10590269-10590288 | None:intergenic | 50.0% | |
| CTTGCAAGTGCAACCTTCTG+TGG | + | chr1_2:10590267-10590286 | Msa0055540:CDS | 50.0% | |
| AGTGTCCTGCATTGAGAGCA+GGG | - | chr1_2:10590299-10590318 | None:intergenic | 50.0% | |
| GGGAAACTAAGTGCCTCAGT+TGG | + | chr1_2:10590810-10590829 | Msa0055540:CDS | 50.0% | |
| ACTAAGTGCCTCAGTTGGCT+TGG | + | chr1_2:10590815-10590834 | Msa0055540:CDS | 50.0% | |
| ! | CTAAGTGCCTCAGTTGGCTT+GGG | + | chr1_2:10590816-10590835 | Msa0055540:CDS | 50.0% |
| CACAATTCCCAAGCCAACTG+AGG | - | chr1_2:10590826-10590845 | None:intergenic | 50.0% | |
| !! | CTCAGTTGGCTTGGGAATTG+TGG | + | chr1_2:10590824-10590843 | Msa0055540:CDS | 50.0% |
| CTAATGGCCTCCTTTCACAC+TGG | - | chr1_2:10591080-10591099 | None:intergenic | 50.0% | |
| TTGCAGCAAGACATCACTCC+CGG | + | chr1_2:10591117-10591136 | Msa0055540:CDS | 50.0% | |
| AACCAGAATTCCCCTCATGC+CGG | - | chr1_2:10591139-10591158 | None:intergenic | 50.0% | |
| ! | TGAGGGGAATTCTGGTTGAC+TGG | + | chr1_2:10591142-10591161 | Msa0055540:CDS | 50.0% |
| AAGCAACTGCAGCCTTCGTT+TGG | - | chr1_2:10591609-10591628 | None:intergenic | 50.0% | |
| AAACGAAGGCTGCAGTTGCT+TGG | + | chr1_2:10591608-10591627 | Msa0055540:CDS | 50.0% | |
| GAGCTGTCTGACTCATCCAA+CGG | - | chr1_2:10591773-10591792 | None:intergenic | 50.0% | |
| ! | CGGTTCCAACTTACTGACTG+CGG | + | chr1_2:10591857-10591876 | Msa0055540:intron | 50.0% |
| TATCCGAACCAGATTCCCTG+TGG | + | chr1_2:10592525-10592544 | Msa0055540:intron | 50.0% | |
| TGACCACAGGGAATCTGGTT+CGG | - | chr1_2:10592531-10592550 | None:intergenic | 50.0% | |
| CAGAACCGATGGATCAAGAC+TGG | + | chr1_2:10592576-10592595 | Msa0055540:intron | 50.0% | |
| TCAAGCTGACCTGGAATTCC+TGG | + | chr1_2:10592759-10592778 | Msa0055540:CDS | 50.0% | |
| GCAGATGCAGCTATCTTGGA+AGG | - | chr1_2:10592838-10592857 | None:intergenic | 50.0% | |
| CACAGCAGATGCAGCTATCT+TGG | - | chr1_2:10592842-10592861 | None:intergenic | 50.0% | |
| !! | CTGCTGTGTTACTTGCCAGA+TGG | + | chr1_2:10592854-10592873 | Msa0055540:CDS | 50.0% |
| ! | AGCATTGAGACGACAGCCTT+TGG | - | chr1_2:10593089-10593108 | None:intergenic | 50.0% |
| GGCGAATTTGTCTCCGAAAC+CGG | + | chr1_2:10593281-10593300 | Msa0055540:CDS | 50.0% | |
| GAATTTGTCTCCGAAACCGG+TGG | + | chr1_2:10593284-10593303 | Msa0055540:CDS | 50.0% | |
| TGTAGGATGGTACCAACCTC+TGG | + | chr1_2:10593472-10593491 | Msa0055540:three_prime_UTR | 50.0% | |
| !! | GATCAAGAAGCACCAGAGGT+TGG | - | chr1_2:10593487-10593506 | None:intergenic | 50.0% |
| ATGTGAGGGTGACTCGAGCA+AGG | + | chr1_2:10588752-10588771 | Msa0055540:CDS | 55.0% | |
| TGTGAGGGTGACTCGAGCAA+GGG | + | chr1_2:10588753-10588772 | Msa0055540:CDS | 55.0% | |
| ! | AGCAGGGGGTTTTCCACAGA+AGG | - | chr1_2:10590283-10590302 | None:intergenic | 55.0% |
| AAACCCCCTGCTCTCAATGC+AGG | + | chr1_2:10590291-10590310 | Msa0055540:CDS | 55.0% | |
| TGTCCTGCATTGAGAGCAGG+GGG | - | chr1_2:10590297-10590316 | None:intergenic | 55.0% | |
| GTGTCCTGCATTGAGAGCAG+GGG | - | chr1_2:10590298-10590317 | None:intergenic | 55.0% | |
| GAGTGTCCTGCATTGAGAGC+AGG | - | chr1_2:10590300-10590319 | None:intergenic | 55.0% | |
| GGGAGTGATGTCTTGCTGCA+AGG | - | chr1_2:10591118-10591137 | None:intergenic | 55.0% | |
| AAGACATCACTCCCGGCATG+AGG | + | chr1_2:10591124-10591143 | Msa0055540:CDS | 55.0% | |
| AGACATCACTCCCGGCATGA+GGG | + | chr1_2:10591125-10591144 | Msa0055540:CDS | 55.0% | |
| ACCAGAATTCCCCTCATGCC+GGG | - | chr1_2:10591138-10591157 | None:intergenic | 55.0% | |
| !! | TCTGGTTGACTGGCTTGTGG+AGG | + | chr1_2:10591152-10591171 | Msa0055540:CDS | 55.0% |
| ! | TCAGGTTGCTCAAGCTGACC+TGG | + | chr1_2:10592750-10592769 | Msa0055540:intron | 55.0% |
| ! | TGACTGGTTGAGGGTCCATC+TGG | - | chr1_2:10592872-10592891 | None:intergenic | 55.0% |
| ! | CGGATGCTCTGACTGGTTGA+GGG | - | chr1_2:10592881-10592900 | None:intergenic | 55.0% |
| ! | ACGGATGCTCTGACTGGTTG+AGG | - | chr1_2:10592882-10592901 | None:intergenic | 55.0% |
| ! | TCAACCAGTCAGAGCATCCG+TGG | + | chr1_2:10592881-10592900 | Msa0055540:CDS | 55.0% |
| ! | CAACCAGTCAGAGCATCCGT+GGG | + | chr1_2:10592882-10592901 | Msa0055540:CDS | 55.0% |
| GACATCACTCCCGGCATGAG+GGG | + | chr1_2:10591126-10591145 | Msa0055540:CDS | 60.0% | |
| TCCCGGCATGAGGGGAATTC+TGG | + | chr1_2:10591134-10591153 | Msa0055540:CDS | 60.0% | |
| AGACCCACGGATGCTCTGAC+TGG | - | chr1_2:10592888-10592907 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 10588261 | 10593626 | 10588261 | ID=Msa0055540;Name=Msa0055540 |
| chr1_2 | mRNA | 10588261 | 10593626 | 10588261 | ID=Msa0055540-mRNA-1;Parent=Msa0055540;Name=Msa0055540-mRNA-1;_AED=0.12;_eAED=0.12;_QI=172|1|1|1|0.90|0.83|12|306|423 |
| chr1_2 | exon | 10588261 | 10588433 | 10588261 | ID=Msa0055540-mRNA-1:exon:4037;Parent=Msa0055540-mRNA-1 |
| chr1_2 | exon | 10588716 | 10588891 | 10588716 | ID=Msa0055540-mRNA-1:exon:4038;Parent=Msa0055540-mRNA-1 |
| chr1_2 | exon | 10590127 | 10590337 | 10590127 | ID=Msa0055540-mRNA-1:exon:4039;Parent=Msa0055540-mRNA-1 |
| chr1_2 | exon | 10590793 | 10590926 | 10590793 | ID=Msa0055540-mRNA-1:exon:4040;Parent=Msa0055540-mRNA-1 |
| chr1_2 | exon | 10591081 | 10591173 | 10591081 | ID=Msa0055540-mRNA-1:exon:4041;Parent=Msa0055540-mRNA-1 |
| chr1_2 | exon | 10591521 | 10591654 | 10591521 | ID=Msa0055540-mRNA-1:exon:4042;Parent=Msa0055540-mRNA-1 |
| chr1_2 | exon | 10592136 | 10592211 | 10592136 | ID=Msa0055540-mRNA-1:exon:4043;Parent=Msa0055540-mRNA-1 |
| chr1_2 | exon | 10592317 | 10592393 | 10592317 | ID=Msa0055540-mRNA-1:exon:4044;Parent=Msa0055540-mRNA-1 |
| chr1_2 | exon | 10592481 | 10592514 | 10592481 | ID=Msa0055540-mRNA-1:exon:4045;Parent=Msa0055540-mRNA-1 |
| chr1_2 | exon | 10592754 | 10592903 | 10592754 | ID=Msa0055540-mRNA-1:exon:4046;Parent=Msa0055540-mRNA-1 |
| chr1_2 | exon | 10593001 | 10593135 | 10593001 | ID=Msa0055540-mRNA-1:exon:4047;Parent=Msa0055540-mRNA-1 |
| chr1_2 | exon | 10593270 | 10593626 | 10593270 | ID=Msa0055540-mRNA-1:exon:4048;Parent=Msa0055540-mRNA-1 |
| chr1_2 | five_prime_UTR | 10588261 | 10588432 | 10588261 | ID=Msa0055540-mRNA-1:five_prime_utr;Parent=Msa0055540-mRNA-1 |
| chr1_2 | CDS | 10588433 | 10588433 | 10588433 | ID=Msa0055540-mRNA-1:cds;Parent=Msa0055540-mRNA-1 |
| chr1_2 | CDS | 10588716 | 10588891 | 10588716 | ID=Msa0055540-mRNA-1:cds;Parent=Msa0055540-mRNA-1 |
| chr1_2 | CDS | 10590127 | 10590337 | 10590127 | ID=Msa0055540-mRNA-1:cds;Parent=Msa0055540-mRNA-1 |
| chr1_2 | CDS | 10590793 | 10590926 | 10590793 | ID=Msa0055540-mRNA-1:cds;Parent=Msa0055540-mRNA-1 |
| chr1_2 | CDS | 10591081 | 10591173 | 10591081 | ID=Msa0055540-mRNA-1:cds;Parent=Msa0055540-mRNA-1 |
| chr1_2 | CDS | 10591521 | 10591654 | 10591521 | ID=Msa0055540-mRNA-1:cds;Parent=Msa0055540-mRNA-1 |
| chr1_2 | CDS | 10592136 | 10592211 | 10592136 | ID=Msa0055540-mRNA-1:cds;Parent=Msa0055540-mRNA-1 |
| chr1_2 | CDS | 10592317 | 10592393 | 10592317 | ID=Msa0055540-mRNA-1:cds;Parent=Msa0055540-mRNA-1 |
| chr1_2 | CDS | 10592481 | 10592514 | 10592481 | ID=Msa0055540-mRNA-1:cds;Parent=Msa0055540-mRNA-1 |
| chr1_2 | CDS | 10592754 | 10592903 | 10592754 | ID=Msa0055540-mRNA-1:cds;Parent=Msa0055540-mRNA-1 |
| chr1_2 | CDS | 10593001 | 10593135 | 10593001 | ID=Msa0055540-mRNA-1:cds;Parent=Msa0055540-mRNA-1 |
| chr1_2 | CDS | 10593270 | 10593320 | 10593270 | ID=Msa0055540-mRNA-1:cds;Parent=Msa0055540-mRNA-1 |
| chr1_2 | three_prime_UTR | 10593321 | 10593626 | 10593321 | ID=Msa0055540-mRNA-1:three_prime_utr;Parent=Msa0055540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
