AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0816390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0816390 MtrunA17_Chr5g0434971 97.668 386 8 1 1 385 1 386 0.0 768
Msa0816390 MtrunA17_Chr6g0474331 74.320 331 84 1 53 382 15 345 0.0 515
Msa0816390 MtrunA17_Chr1g0204101 74.847 326 79 2 54 378 13 336 1.18e-180 505
Msa0816390 MtrunA17_Chr2g0329451 68.421 323 100 2 56 378 5 325 6.04e-163 459
Msa0816390 MtrunA17_Chr1g0188291 66.346 312 104 1 63 374 5 315 4.87e-156 442
Msa0816390 MtrunA17_Chr4g0033631 66.771 319 105 1 64 382 13 330 5.32e-156 442
Msa0816390 MtrunA17_Chr1g0183241 58.934 319 109 3 61 378 105 402 4.14e-125 367
Msa0816390 MtrunA17_Chr1g0171921 51.842 380 156 9 18 381 130 498 5.23e-117 350
Msa0816390 MtrunA17_Chr1g0183661 57.343 286 109 3 81 365 3 276 1.49e-111 328
Msa0816390 MtrunA17_Chr1g0177771 54.938 324 127 5 61 381 248 555 3.24e-109 331
Msa0816390 MtrunA17_Chr1g0177321 52.778 324 125 5 61 381 174 472 1.62e-102 311
Msa0816390 MtrunA17_Chr7g0246421 61.658 193 73 1 190 381 2 194 2.35e-83 252
Msa0816390 MtrunA17_Chr1g0176221 49.576 236 89 2 143 378 1 206 4.12e-68 214
Msa0816390 MtrunA17_Chr4g0008441 32.778 360 196 4 65 378 92 451 2.78e-54 186
Msa0816390 MtrunA17_Chr7g0246411 64.615 130 44 1 63 190 38 167 2.11e-53 175
Msa0816390 MtrunA17_Chr4g0020911 60.741 135 52 1 189 322 55 189 2.20e-50 168
Msa0816390 MtrunA17_Chr5g0419371 30.259 347 200 7 65 374 209 550 4.81e-47 169
Msa0816390 MtrunA17_Chr2g0314311 27.586 290 183 7 97 380 89 357 6.44e-15 75.5
Msa0816390 MtrunA17_Chr3g0141731 26.459 257 174 6 87 339 73 318 8.69e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0816390 AT1G66430.1 78.295 387 77 4 1 384 1 383 0.0 596
Msa0816390 AT5G51830.2 72.561 328 88 2 55 380 11 338 2.88e-175 492
Msa0816390 AT5G51830.1 72.561 328 88 2 55 380 11 338 2.88e-175 492
Msa0816390 AT3G59480.1 67.188 320 103 2 63 382 7 324 5.65e-158 447
Msa0816390 AT1G06030.1 66.984 315 103 1 66 380 11 324 5.03e-156 442
Msa0816390 AT1G06020.1 65.312 320 110 1 61 380 5 323 7.10e-154 437
Msa0816390 AT2G31390.1 65.931 317 107 1 66 382 9 324 1.06e-153 436
Msa0816390 AT4G10260.1 67.638 309 99 1 64 372 4 311 1.06e-153 436
Msa0816390 AT3G54090.1 32.687 361 194 6 65 378 102 460 7.72e-55 187
Msa0816390 AT1G50390.1 50.575 174 56 1 211 384 1 144 1.05e-50 167
Msa0816390 AT1G69200.1 30.091 329 195 6 65 359 205 532 1.44e-43 160
Msa0816390 AT1G17160.1 27.027 296 179 9 97 380 105 375 1.30e-14 75.1

Find 119 sgRNAs with CRISPR-Local

Find 520 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAACCTGAGGCTTCCTTTA+TGG 0.168693 5_3:+50705108 Msa0816390:CDS
AGAACAGTGTTGAATATTAA+TGG 0.181977 5_3:-50700510 None:intergenic
GAGAAGGAATTCTGAGTATA+TGG 0.229087 5_3:+50705150 Msa0816390:CDS
ACAAAGGCAATACCTGAAAA+TGG 0.237120 5_3:+50702665 Msa0816390:CDS
CCAAGTCTAGTTCATCTTCT+TGG 0.239311 5_3:-50704839 None:intergenic
AACTGTTAGTGGCCTTTCTT+TGG 0.246570 5_3:+50702754 Msa0816390:CDS
TACGGATCTTTCATTACTTC+AGG 0.289822 5_3:+50706008 Msa0816390:CDS
TTAAAATTCAACCGAACATT+AGG 0.296573 5_3:-50700694 None:intergenic
CAACCCATTGTTAAAGCTTC+GGG 0.301229 5_3:+50700649 Msa0816390:CDS
CAGGCCAAGATCTTTCATTA+TGG 0.304009 5_3:+50704993 Msa0816390:intron
TCAGTTCATGTGGTTGCATA+TGG 0.310887 5_3:+50707117 Msa0816390:three_prime_UTR
AGAGGCGATTCCTTTGTTTC+AGG 0.315237 5_3:-50702692 None:intergenic
TGATGCACCGGCATTTAAAA+AGG 0.319751 5_3:+50702778 Msa0816390:CDS
TCGCCTCTGGTGGTTTGTTT+CGG 0.326535 5_3:+50702707 Msa0816390:CDS
GATTTGTTGGATTACTGTTT+CGG 0.333070 5_3:-50700458 None:intergenic
AGAACCAAGTGTTCTAATAA+TGG 0.344827 5_3:+50707040 Msa0816390:three_prime_UTR
AACATCAGGTTATATATGTT+TGG 0.348565 5_3:+50707080 Msa0816390:three_prime_UTR
GTCATTCTTTATCCAACATC+AGG 0.368894 5_3:+50707066 Msa0816390:three_prime_UTR
CCAACCCATTGTTAAAGCTT+CGG 0.369714 5_3:+50700648 Msa0816390:CDS
ACAAGGAGTAGTTTGAGGTT+TGG 0.379921 5_3:-50705422 None:intergenic
CGAATATGAAATTATGATAC+AGG 0.390760 5_3:-50706965 None:intergenic
TGAATTGAGTTATGATTTGT+TGG 0.393998 5_3:-50700471 None:intergenic
AAGCCGATGAACCTCCTAAT+CGG 0.394552 5_3:-50702841 None:intergenic
CTCTCCATTATTAGAACACT+TGG 0.398882 5_3:-50707044 None:intergenic
CTCGTTCTCCATCACTCCTT+AGG 0.400314 5_3:-50704776 None:intergenic
GAGGCGATTCCTTTGTTTCA+GGG 0.403590 5_3:-50702691 None:intergenic
CATAAAGGAAGCCTCAGGTT+AGG 0.408170 5_3:-50705107 None:intergenic
CTCATTCTCCTCCTAATGTT+CGG 0.412156 5_3:+50700683 Msa0816390:CDS
GTTTCCTTTGTGGGCAATGC+TGG 0.413312 5_3:-50706920 None:intergenic
CTATCTGCAGAAGGCCATAA+AGG 0.427028 5_3:-50705122 None:intergenic
CCTTTCTTTGGCTGATGCAC+CGG 0.434505 5_3:+50702766 Msa0816390:CDS
CCTGCAGCCTTCTGCACCTT+CGG 0.435704 5_3:-50705447 None:intergenic
TTCAGAACAGTTTCCTTTGT+GGG 0.437378 5_3:-50706929 None:intergenic
CGAACCATAATGAAAGATCT+TGG 0.441728 5_3:-50704997 None:intergenic
GCTAAGGCGGTACGTGCACC+AGG 0.444231 5_3:-50704744 None:intergenic
CGGTAACAAGGAGTAGTTTG+AGG 0.447611 5_3:-50705427 None:intergenic
ATTATGATACAGGTTTAAGC+AGG 0.460599 5_3:-50706955 None:intergenic
CCAAGAAGATGAACTAGACT+TGG 0.462137 5_3:+50704839 Msa0816390:CDS
GCTGTAGGCATATCCCGATT+AGG 0.469524 5_3:+50702827 Msa0816390:CDS
CAGGTTGGTGAGGATGAATT+CGG 0.473756 5_3:+50704660 Msa0816390:intron
GGAGTAGTTTGAGGTTTGGA+TGG 0.478027 5_3:-50705418 None:intergenic
CTCAAGTTTGCCAATGCTTG+TGG 0.478682 5_3:+50706866 Msa0816390:CDS
AAATGGGAGCCCTGAAACAA+AGG 0.480045 5_3:+50702682 Msa0816390:CDS
TGAAACAAAGGAATCGCCTC+TGG 0.480047 5_3:+50702694 Msa0816390:CDS
CAAAGGCAATACCTGAAAAT+GGG 0.487466 5_3:+50702666 Msa0816390:CDS
TTCTTTCTGCTTCACAAGTG+TGG 0.490123 5_3:+50700594 Msa0816390:CDS
AGCCGATGAACCTCCTAATC+GGG 0.490889 5_3:-50702840 None:intergenic
TTGCTAGAAGAGATGTTGAT+TGG 0.493133 5_3:-50707152 None:intergenic
TTGGAGAAGCATATCAGCAC+TGG 0.493942 5_3:-50704820 None:intergenic
AAACCCGAAGCTTTAACAAT+GGG 0.494614 5_3:-50700652 None:intergenic
CCTTAGCATTTGTTACCCTA+AGG 0.495366 5_3:+50704760 Msa0816390:CDS
ATTCAGAACAGTTTCCTTTG+TGG 0.496575 5_3:-50706930 None:intergenic
ATAAAGGAAGCCTCAGGTTA+GGG 0.497182 5_3:-50705106 None:intergenic
CGGTAGAGTGACGGGAATGA+AGG 0.497609 5_3:+50705921 Msa0816390:CDS
TTAGGAGGAGAATGAGATGA+AGG 0.501955 5_3:-50700676 None:intergenic
GAATTCAGCGGTAGAGTGAC+GGG 0.505457 5_3:+50705913 Msa0816390:CDS
TCGTTCTCCATCACTCCTTA+GGG 0.506828 5_3:-50704775 None:intergenic
ATTGAAGAGCCATGGAAGAA+AGG 0.508764 5_3:-50700567 None:intergenic
AGAAGGAATTCTGAGTATAT+GGG 0.508950 5_3:+50705151 Msa0816390:CDS
TATAACAGAACCATGCAAAT+CGG 0.510105 5_3:+50705028 Msa0816390:CDS
ATGCCTACAGCAACATTAGC+AGG 0.513767 5_3:-50702815 None:intergenic
GCAAAGGCTGCAAAAGAAGC+TGG 0.517282 5_3:+50705065 Msa0816390:CDS
CCGAAGGTGCAGAAGGCTGC+AGG 0.522313 5_3:+50705447 Msa0816390:CDS
AGTGTGGTTTCTAACCCTCC+TGG 0.524883 5_3:+50700610 Msa0816390:CDS
CAGGGTCAAAACGCATCCCT+TGG 0.526315 5_3:-50704725 None:intergenic
GAAAATAATGTAAACAGCCA+AGG 0.527985 5_3:+50704708 Msa0816390:CDS
AAGAAAGGCCACTAACAGTT+GGG 0.530391 5_3:-50702751 None:intergenic
AAATTCAACCGAACATTAGG+AGG 0.534291 5_3:-50700691 None:intergenic
AGTCAATGCACCACAAGCAT+TGG 0.535360 5_3:-50706876 None:intergenic
CGAACAACAGCATCATCGTA+TGG 0.539208 5_3:-50705386 None:intergenic
CCGGTGCATCAGCCAAAGAA+AGG 0.542352 5_3:-50702766 None:intergenic
TGGCTGAATTTAACTGAACC+AGG 0.544221 5_3:-50700628 None:intergenic
ATCCCGATTAGGAGGTTCAT+CGG 0.545549 5_3:+50702838 Msa0816390:CDS
GCAGTTGACACCACTGGTGC+TGG 0.552715 5_3:+50705949 Msa0816390:CDS
AAAACCCGAAGCTTTAACAA+TGG 0.552775 5_3:-50700653 None:intergenic
TTTGTTACCCTAAGGAGTGA+TGG 0.553179 5_3:+50704768 Msa0816390:CDS
AAAGAAAGGCCACTAACAGT+TGG 0.555253 5_3:-50702752 None:intergenic
AAACATATATAACCTGATGT+TGG 0.555437 5_3:-50707078 None:intergenic
CTTCTGCACCTTCGGTAACA+AGG 0.557864 5_3:-50705439 None:intergenic
CCGAAGCTTTAACAATGGGT+TGG 0.559271 5_3:-50700648 None:intergenic
TGGAGAAGCATATCAGCACT+GGG 0.560245 5_3:-50704819 None:intergenic
GGCACACGTAGCTGCAGCAA+AGG 0.562775 5_3:+50705049 Msa0816390:CDS
GGAATTCAGCGGTAGAGTGA+CGG 0.571820 5_3:+50705912 Msa0816390:intron
ACATTAGCAGGAGCACCACC+TGG 0.573506 5_3:-50702803 None:intergenic
AGAACCACATTGAAGAGCCA+TGG 0.573559 5_3:-50700575 None:intergenic
AAAATAATGTAAACAGCCAA+GGG 0.579126 5_3:+50704709 Msa0816390:CDS
CCTTAGGGTAACAAATGCTA+AGG 0.580393 5_3:-50704760 None:intergenic
TCTTCCATGGCTCTTCAATG+TGG 0.580445 5_3:+50700571 Msa0816390:exon
CTTGTTACCGAAGGTGCAGA+AGG 0.585420 5_3:+50705440 Msa0816390:CDS
GCTCCTGCTAATGTTGCTGT+AGG 0.587693 5_3:+50702812 Msa0816390:CDS
CTTTGTTATAGGAAAGACAA+AGG 0.589814 5_3:+50702649 Msa0816390:intron
AAGGCCATAAAGGAAGCCTC+AGG 0.593306 5_3:-50705112 None:intergenic
AATACTATCACAATTAGCTA+CGG 0.601113 5_3:+50705990 Msa0816390:CDS
GCTACGTGTGCCGATTTGCA+TGG 0.603029 5_3:-50705038 None:intergenic
TAGAGTGACGGGAATGAAGG+TGG 0.603673 5_3:+50705924 Msa0816390:CDS
TGAATTTAACTGAACCAGGA+GGG 0.610378 5_3:-50700624 None:intergenic
TGTCTTATGACCCTAACCTG+AGG 0.617249 5_3:+50705096 Msa0816390:CDS
AACAAAGGAATCGCCTCTGG+TGG 0.618641 5_3:+50702697 Msa0816390:CDS
GTAGGCATATCCCGATTAGG+AGG 0.620851 5_3:+50702830 Msa0816390:CDS
TTGTTGGATTACTGTTTCGG+AGG 0.621285 5_3:-50700455 None:intergenic
TCTCTAGCACTATCTGCAGA+AGG 0.622016 5_3:-50705131 None:intergenic
TATGCTTGCAGATATACTCA+AGG 0.627173 5_3:+50704686 Msa0816390:CDS
AAACTACTCCTTGTTACCGA+AGG 0.636668 5_3:+50705431 Msa0816390:CDS
TATTCTTTGCAGGAATTCAG+CGG 0.640550 5_3:+50705901 Msa0816390:intron
GGAGACTGCAGATATCATCA+AGG 0.647359 5_3:+50705172 Msa0816390:CDS
TTATGATACAGGTTTAAGCA+GGG 0.652369 5_3:-50706954 None:intergenic
GCATTGACTGTGACTGAGAG+AGG 0.655698 5_3:+50706890 Msa0816390:CDS
CTGAATTTAACTGAACCAGG+AGG 0.662901 5_3:-50700625 None:intergenic
GTGGATGCAGTTGACACCAC+TGG 0.675421 5_3:+50705943 Msa0816390:CDS
AAAAGCGTCACCAGCACCAG+TGG 0.676240 5_3:-50705959 None:intergenic
TCTGCAGATAGTGCTAGAGA+AGG 0.676637 5_3:+50705134 Msa0816390:CDS
AATACCAGCATTGCCCACAA+AGG 0.679434 5_3:+50706916 Msa0816390:CDS
TAGGGTAACAAATGCTAAGG+CGG 0.682155 5_3:-50704757 None:intergenic
AGACTTGGACTTAATCACAA+AGG 0.693543 5_3:+50704854 Msa0816390:CDS
GCAACATGTACAGGTTGGTG+AGG 0.694645 5_3:+50704650 Msa0816390:intron
TCTCCGAAACAAACCACCAG+AGG 0.694686 5_3:-50702710 None:intergenic
AGGCTGCAGGTATTACACCA+AGG 0.733944 5_3:+50705460 Msa0816390:CDS
CTAAGGCGGTACGTGCACCA+GGG 0.735969 5_3:-50704743 None:intergenic
GGAGAAGCATATCAGCACTG+GGG 0.798655 5_3:-50704818 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGAAATCAAATATAAT+GGG - chr5_3:50703055-50703074 None:intergenic 10.0%
!!! AATTTTGAAATCAAATATAA+TGG - chr5_3:50703056-50703075 None:intergenic 10.0%
!! ATAAAAAAAAAAACTTTACA+GGG - chr5_3:50704029-50704048 None:intergenic 10.0%
!! AATAAAAAAAAAAACTTTAC+AGG - chr5_3:50704030-50704049 None:intergenic 10.0%
!!! ATAATTTAAGATACATTTTT+TGG - chr5_3:50704383-50704402 None:intergenic 10.0%
!!! TAATGTTTTATCATAAAATT+TGG - chr5_3:50705761-50705780 None:intergenic 10.0%
!!! AATTTTATGATAAAACATTA+TGG + chr5_3:50705761-50705780 Msa0816390:intron 10.0%
!! AAAATAAAATAAAGAAATCA+TGG - chr5_3:50705853-50705872 None:intergenic 10.0%
!!! TCTTTATTTTATTTTTTGAA+AGG + chr5_3:50705858-50705877 Msa0816390:intron 10.0%
!! TAAAAAAAAAAACTTTACAG+GGG - chr5_3:50704028-50704047 None:intergenic 15.0%
!!! AAAACAAATTATTTTTACAG+GGG - chr5_3:50704057-50704076 None:intergenic 15.0%
!!! CAAAACAAATTATTTTTACA+GGG - chr5_3:50704058-50704077 None:intergenic 15.0%
!!! TCAAAACAAATTATTTTTAC+AGG - chr5_3:50704059-50704078 None:intergenic 15.0%
!!! AATAAAATTGGTTTTTTGTT+TGG + chr5_3:50704128-50704147 Msa0816390:intron 15.0%
!! TCAAAACAAAAAAAATTTAC+AGG + chr5_3:50704168-50704187 Msa0816390:intron 15.0%
!! CAAAACAAAAAAAATTTACA+GGG + chr5_3:50704169-50704188 Msa0816390:intron 15.0%
!! AAAACAAAAAAAATTTACAG+GGG + chr5_3:50704170-50704189 Msa0816390:intron 15.0%
!! TCAAAAAAAAAAATTTACAG+TGG + chr5_3:50704199-50704218 Msa0816390:intron 15.0%
!! CAAAAAAAAAAATTTACAGT+GGG + chr5_3:50704200-50704219 Msa0816390:intron 15.0%
!! AAAAAAAAAAATTTACAGTG+GGG + chr5_3:50704201-50704220 Msa0816390:intron 15.0%
!!! TTTTTCTAGAATAAGAATTA+CGG + chr5_3:50705257-50705276 Msa0816390:intron 15.0%
!!! TTAAATTTTTCATGATTAGT+TGG - chr5_3:50707239-50707258 None:intergenic 15.0%
!!! TTTTAAAGGTAAATCAATTC+TGG + chr5_3:50700711-50700730 Msa0816390:intron 20.0%
!! TTTAAAGGTAAATCAATTCT+GGG + chr5_3:50700712-50700731 Msa0816390:intron 20.0%
!! CATGTTTATTATTTCATGAA+AGG + chr5_3:50700856-50700875 Msa0816390:intron 20.0%
!!! TTTTGGAATTTTGAAATCTA+AGG + chr5_3:50700902-50700921 Msa0816390:intron 20.0%
!! CATATAAGTGTTTATGTATA+AGG + chr5_3:50701068-50701087 Msa0816390:intron 20.0%
!! TCAAATAAGTCAATTCAAAT+AGG + chr5_3:50701267-50701286 Msa0816390:intron 20.0%
!!! AATTATAAGAACCACTTTTT+AGG + chr5_3:50701498-50701517 Msa0816390:intron 20.0%
!!! ATTTTCTTGGTAATTATCAA+GGG + chr5_3:50701744-50701763 Msa0816390:intron 20.0%
!!! ATTAGTCCATTTAATTTACT+TGG + chr5_3:50701935-50701954 Msa0816390:intron 20.0%
!!! TTAGTCCATTTAATTTACTT+GGG + chr5_3:50701936-50701955 Msa0816390:intron 20.0%
!! ATATTGCATTCAAATGTAAT+GGG + chr5_3:50702195-50702214 Msa0816390:intron 20.0%
!! TTGTTCCATGAAATATATAT+AGG + chr5_3:50703109-50703128 Msa0816390:intron 20.0%
!! AACATCCTATATATATTTCA+TGG - chr5_3:50703117-50703136 None:intergenic 20.0%
!! AAAAAGTGATTATAAATAGG+AGG - chr5_3:50703324-50703343 None:intergenic 20.0%
!!! TCCTATTTATAATCACTTTT+TGG + chr5_3:50703323-50703342 Msa0816390:intron 20.0%
!!! CCTATTTATAATCACTTTTT+GGG + chr5_3:50703324-50703343 Msa0816390:intron 20.0%
!! TCAAATATTACTTGTAATGT+GGG - chr5_3:50703768-50703787 None:intergenic 20.0%
!! TTCAAATATTACTTGTAATG+TGG - chr5_3:50703769-50703788 None:intergenic 20.0%
!! AAAAAAAAAAACTTTACAGG+GGG - chr5_3:50704027-50704046 None:intergenic 20.0%
!!! AAACAAATTATTTTTACAGG+GGG - chr5_3:50704056-50704075 None:intergenic 20.0%
!!! AAGAAATTTTCGTTTTTGTT+TGG - chr5_3:50704098-50704117 None:intergenic 20.0%
!! GTAAAAAATGTTCATGATAA+GGG - chr5_3:50704284-50704303 None:intergenic 20.0%
!!! ATAAAGTTGATAAATGTAGA+TGG - chr5_3:50704306-50704325 None:intergenic 20.0%
!! ATTAGGTAATTCTTGTAAAA+TGG - chr5_3:50704450-50704469 None:intergenic 20.0%
!! TAAGTATGTCTATAATTATG+TGG + chr5_3:50704489-50704508 Msa0816390:intron 20.0%
!!! TTCTGTTATTTATTTCTTAC+AGG + chr5_3:50704974-50704993 Msa0816390:intron 20.0%
!! TGAAAAAATAATTATCCGAT+TGG - chr5_3:50705323-50705342 None:intergenic 20.0%
!! TATCTAATTACACATAGATT+AGG + chr5_3:50705526-50705545 Msa0816390:intron 20.0%
!! GTTGTTTGGTTAAAATATTT+GGG - chr5_3:50706072-50706091 None:intergenic 20.0%
!! TATTTCTTTAAGCTACTATA+GGG - chr5_3:50706403-50706422 None:intergenic 20.0%
!! ATATTTCTTTAAGCTACTAT+AGG - chr5_3:50706404-50706423 None:intergenic 20.0%
!! ATAAGCATTTATATGATAAG+TGG + chr5_3:50706487-50706506 Msa0816390:intron 20.0%
!! TAGGTATATCCTAAATTTAA+GGG - chr5_3:50706553-50706572 None:intergenic 20.0%
!! ATAGGTATATCCTAAATTTA+AGG - chr5_3:50706554-50706573 None:intergenic 20.0%
!! AACATAAACTAAAATGCAAT+GGG - chr5_3:50706703-50706722 None:intergenic 20.0%
!! TAACATAAACTAAAATGCAA+TGG - chr5_3:50706704-50706723 None:intergenic 20.0%
!!! CATATTCGAGTATTAATTTT+TGG + chr5_3:50706980-50706999 Msa0816390:three_prime_UTR 20.0%
!!! TATATAATTTTCAGTTCATG+TGG + chr5_3:50707107-50707126 Msa0816390:three_prime_UTR 20.0%
!!! AAGTGAGCAATTAATTTTAT+AGG + chr5_3:50707198-50707217 Msa0816390:three_prime_UTR 20.0%
!!! AGTGAGCAATTAATTTTATA+GGG + chr5_3:50707199-50707218 Msa0816390:three_prime_UTR 20.0%
!! TGAATTGAGTTATGATTTGT+TGG - chr5_3:50700474-50700493 None:intergenic 25.0%
!! AGAACAGTGTTGAATATTAA+TGG - chr5_3:50700513-50700532 None:intergenic 25.0%
! TTAAAATTCAACCGAACATT+AGG - chr5_3:50700697-50700716 None:intergenic 25.0%
!! AATGTTCGGTTGAATTTTAA+AGG + chr5_3:50700697-50700716 Msa0816390:CDS 25.0%
!!! AGTTTTGATTCTGTATTTTG+AGG + chr5_3:50700750-50700769 Msa0816390:intron 25.0%
!! CAAAAATTTTTGCTCATTTC+AGG - chr5_3:50700800-50700819 None:intergenic 25.0%
!! AATGAGTGAAATTGGAATTT+TGG + chr5_3:50700885-50700904 Msa0816390:intron 25.0%
!! ACAAGATTTTCCTATTTGTT+TGG + chr5_3:50701005-50701024 Msa0816390:intron 25.0%
! AAGTGGTTCTTATAATTCAA+GGG - chr5_3:50701495-50701514 None:intergenic 25.0%
! AAAGTGGTTCTTATAATTCA+AGG - chr5_3:50701496-50701515 None:intergenic 25.0%
!!! ATGCAGTTTTATCATCAATT+TGG + chr5_3:50701634-50701653 Msa0816390:intron 25.0%
!!! TGCAGTTTTATCATCAATTT+GGG + chr5_3:50701635-50701654 Msa0816390:intron 25.0%
!!! CATTTTCTTGGTAATTATCA+AGG + chr5_3:50701743-50701762 Msa0816390:intron 25.0%
! GATATTGCATTCAAATGTAA+TGG + chr5_3:50702194-50702213 Msa0816390:intron 25.0%
! TATTGCATTCAAATGTAATG+GGG + chr5_3:50702196-50702215 Msa0816390:intron 25.0%
!! TCTCAACATTTCTTTGTTAT+AGG + chr5_3:50702638-50702657 Msa0816390:intron 25.0%
! ATATTTCATGGAACAAAACA+GGG - chr5_3:50703105-50703124 None:intergenic 25.0%
! TATATTTCATGGAACAAAAC+AGG - chr5_3:50703106-50703125 None:intergenic 25.0%
! TTAGAAATAGACATAACTGA+TGG + chr5_3:50703202-50703221 Msa0816390:intron 25.0%
! CCCAAAAAGTGATTATAAAT+AGG - chr5_3:50703327-50703346 None:intergenic 25.0%
!! TCTAACAGCACAAATTTTTA+AGG + chr5_3:50703447-50703466 Msa0816390:intron 25.0%
!! CTAACAGCACAAATTTTTAA+GGG + chr5_3:50703448-50703467 Msa0816390:intron 25.0%
!!! TAACAGCACAAATTTTTAAG+GGG + chr5_3:50703449-50703468 Msa0816390:intron 25.0%
!!! ATTGACTTGTGAATCTTATT+GGG + chr5_3:50703479-50703498 Msa0816390:intron 25.0%
! TTTCTGTAAATATAAGCAAG+AGG - chr5_3:50703597-50703616 None:intergenic 25.0%
!! TGATATTGAGTACATTTTGA+TGG - chr5_3:50703624-50703643 None:intergenic 25.0%
!!! ATCTAAGGTGATATTTTTCT+AGG - chr5_3:50703814-50703833 None:intergenic 25.0%
! AAAAAAAAAACTTTACAGGG+GGG - chr5_3:50704026-50704045 None:intergenic 25.0%
! GGTAAAAAATGTTCATGATA+AGG - chr5_3:50704285-50704304 None:intergenic 25.0%
! AATCTTGTTGAAATTGAGTT+TGG - chr5_3:50704618-50704637 None:intergenic 25.0%
! AAAATAATGTAAACAGCCAA+GGG + chr5_3:50704709-50704728 Msa0816390:CDS 25.0%
! CGACAATAATATAAGCATTA+AGG - chr5_3:50704946-50704965 None:intergenic 25.0%
!! GAGATTTCTTTTCTTACAAA+TGG + chr5_3:50705356-50705375 Msa0816390:CDS 25.0%
! CATTGTTATAGAATTCATGT+TGG + chr5_3:50705574-50705593 Msa0816390:intron 25.0%
!! AATTCATGTTGGTAGAAAAT+AGG + chr5_3:50705585-50705604 Msa0816390:intron 25.0%
!!! CTTCTCTTATAGTTTTTTCT+AGG - chr5_3:50705703-50705722 None:intergenic 25.0%
!!! AGCTTTATTTTATTCTTTGC+AGG + chr5_3:50705891-50705910 Msa0816390:intron 25.0%
! AATACTATCACAATTAGCTA+CGG + chr5_3:50705990-50706009 Msa0816390:CDS 25.0%
! GGTTGTTTGGTTAAAATATT+TGG - chr5_3:50706073-50706092 None:intergenic 25.0%
! TTTCTTAACTCATTTGCATT+GGG - chr5_3:50706222-50706241 None:intergenic 25.0%
! ATTTCTTAACTCATTTGCAT+TGG - chr5_3:50706223-50706242 None:intergenic 25.0%
!!! GAAATTAAACTTGTTATTGC+TGG + chr5_3:50706238-50706257 Msa0816390:intron 25.0%
!!! GAAATTAAACTTGTTATTGC+TGG + chr5_3:50706238-50706257 Msa0816390:intron 25.0%
!! TAGAGTTTTCACTACATTAT+AGG - chr5_3:50706572-50706591 None:intergenic 25.0%
! CGAATATGAAATTATGATAC+AGG - chr5_3:50706968-50706987 None:intergenic 25.0%
!!! ATTAATTTTTGGCGAAGTTT+AGG + chr5_3:50706991-50707010 Msa0816390:three_prime_UTR 25.0%
! AAACATATATAACCTGATGT+TGG - chr5_3:50707081-50707100 None:intergenic 25.0%
! AACATCAGGTTATATATGTT+TGG + chr5_3:50707080-50707099 Msa0816390:three_prime_UTR 25.0%
!! GATTTGTTGGATTACTGTTT+CGG - chr5_3:50700461-50700480 None:intergenic 30.0%
! ATGATTTGGCACAATAAAAG+AGG + chr5_3:50700938-50700957 Msa0816390:intron 30.0%
!! TGACATCCATAAGTTGTTTT+CGG - chr5_3:50701188-50701207 None:intergenic 30.0%
! ATACTTTAAGCAGCTTTATC+TGG + chr5_3:50701424-50701443 Msa0816390:intron 30.0%
AGTGGTTCTTATAATTCAAG+GGG - chr5_3:50701494-50701513 None:intergenic 30.0%
! GTTTTATCATCAATTTGGGA+TGG + chr5_3:50701639-50701658 Msa0816390:intron 30.0%
!! AAAAGGTATTCGGGTATTTA+TGG + chr5_3:50701692-50701711 Msa0816390:intron 30.0%
GTCACAAAAAACACAATCTT+GGG - chr5_3:50701827-50701846 None:intergenic 30.0%
!!! TGTTTTTTGTGACGAATTTG+TGG + chr5_3:50701834-50701853 Msa0816390:intron 30.0%
AACTGCCCAAGTAAATTAAA+TGG - chr5_3:50701944-50701963 None:intergenic 30.0%
! ATTTAATTTACTTGGGCAGT+TGG + chr5_3:50701943-50701962 Msa0816390:intron 30.0%
AGGCTAATAATAAAAGGTTG+AGG + chr5_3:50701981-50702000 Msa0816390:intron 30.0%
AATAATAAAAGGTTGAGGCA+TGG + chr5_3:50701986-50702005 Msa0816390:intron 30.0%
AAGGATGTTTATCAATGTTG+TGG + chr5_3:50702063-50702082 Msa0816390:intron 30.0%
TACATTTGAATGCAATATCC+CGG - chr5_3:50702193-50702212 None:intergenic 30.0%
!! TGGGATTATTTTGTAGATCA+GGG + chr5_3:50702377-50702396 Msa0816390:intron 30.0%
TTTAGAGATGTGTGTAATTG+AGG + chr5_3:50702537-50702556 Msa0816390:intron 30.0%
! CTTTGTTATAGGAAAGACAA+AGG + chr5_3:50702649-50702668 Msa0816390:intron 30.0%
TGTACTTTATTGTGCAACTT+AGG + chr5_3:50702933-50702952 Msa0816390:intron 30.0%
ATGTCAAGCAAAGTCAATAT+TGG - chr5_3:50702966-50702985 None:intergenic 30.0%
GGACTATAATGATAAGTAGA+TGG - chr5_3:50703147-50703166 None:intergenic 30.0%
!! GTTATGTCTATTTCTAACAG+AGG - chr5_3:50703199-50703218 None:intergenic 30.0%
ATTAACCACCTCTTAGAATT+CGG + chr5_3:50703249-50703268 Msa0816390:intron 30.0%
!!! CCTTATATGCTGATTTTGTA+GGG - chr5_3:50703292-50703311 None:intergenic 30.0%
!!! ACCTTATATGCTGATTTTGT+AGG - chr5_3:50703293-50703312 None:intergenic 30.0%
AAAATCAGCATATAAGGTGA+GGG + chr5_3:50703295-50703314 Msa0816390:intron 30.0%
GTCTCACTTAAAATGTGATA+TGG - chr5_3:50703350-50703369 None:intergenic 30.0%
GATTATTCATTTCACTACCA+CGG - chr5_3:50703429-50703448 None:intergenic 30.0%
!! CATTGACTTGTGAATCTTAT+TGG + chr5_3:50703478-50703497 Msa0816390:intron 30.0%
TTCTGTGTCATCATCTTTAA+TGG - chr5_3:50703523-50703542 None:intergenic 30.0%
AAACCTCAAAATTAACCCAA+AGG + chr5_3:50703667-50703686 Msa0816390:intron 30.0%
GTGTGTATCACCTTATAAAT+TGG + chr5_3:50703689-50703708 Msa0816390:intron 30.0%
CAATTTCTTCAATAGTCGTA+TGG + chr5_3:50703943-50703962 Msa0816390:intron 30.0%
GAAATGACCTATATTACAGA+GGG - chr5_3:50703997-50704016 None:intergenic 30.0%
TCTGTAATATAGGTCATTTC+CGG + chr5_3:50703997-50704016 Msa0816390:intron 30.0%
AGCAGAAATTACATAGTTAG+GGG - chr5_3:50704537-50704556 None:intergenic 30.0%
CAGCAGAAATTACATAGTTA+GGG - chr5_3:50704538-50704557 None:intergenic 30.0%
GAAAATAATGTAAACAGCCA+AGG + chr5_3:50704708-50704727 Msa0816390:CDS 30.0%
ATTAAGGTATGAAGTTACAG+TGG - chr5_3:50704930-50704949 None:intergenic 30.0%
TATAACAGAACCATGCAAAT+CGG + chr5_3:50705028-50705047 Msa0816390:CDS 30.0%
AGAAGGAATTCTGAGTATAT+GGG + chr5_3:50705151-50705170 Msa0816390:CDS 30.0%
!! TTCTAGAATAAGAATTACGG+AGG + chr5_3:50705260-50705279 Msa0816390:intron 30.0%
AAACTATAAGAGAAGCTATC+TGG + chr5_3:50705708-50705727 Msa0816390:intron 30.0%
!! GGCTTTAAATTGCAGTATTA+AGG - chr5_3:50706194-50706213 None:intergenic 30.0%
TGGTTTAAGAAAACAACTTG+CGG + chr5_3:50706331-50706350 Msa0816390:intron 30.0%
GTTGAAAATAGCTTATGAAG+CGG - chr5_3:50706365-50706384 None:intergenic 30.0%
GCTTAAAGAAATATCTTACG+TGG + chr5_3:50706410-50706429 Msa0816390:intron 30.0%
TTGTTAGTTACTCATCGAAA+CGG + chr5_3:50706526-50706545 Msa0816390:intron 30.0%
! AGCACATTCATGTAATGTTT+TGG - chr5_3:50706629-50706648 None:intergenic 30.0%
TTATGATACAGGTTTAAGCA+GGG - chr5_3:50706957-50706976 None:intergenic 30.0%
ATTATGATACAGGTTTAAGC+AGG - chr5_3:50706958-50706977 None:intergenic 30.0%
AGAACCAAGTGTTCTAATAA+TGG + chr5_3:50707040-50707059 Msa0816390:three_prime_UTR 30.0%
! AGTGATTTTCCTTTCTTCCA+TGG + chr5_3:50700558-50700577 Msa0816390:exon 35.0%
TGAATTTAACTGAACCAGGA+GGG - chr5_3:50700627-50700646 None:intergenic 35.0%
! AAACCCGAAGCTTTAACAAT+GGG - chr5_3:50700655-50700674 None:intergenic 35.0%
! AAAACCCGAAGCTTTAACAA+TGG - chr5_3:50700656-50700675 None:intergenic 35.0%
AAATTCAACCGAACATTAGG+AGG - chr5_3:50700694-50700713 None:intergenic 35.0%
GGCAATTGAATGAGTGAAAT+TGG + chr5_3:50700877-50700896 Msa0816390:intron 35.0%
!! GCTCAAGAATGTTGATGATT+TGG + chr5_3:50700924-50700943 Msa0816390:intron 35.0%
! AAAAGAGGTGCAAAGATGTT+AGG + chr5_3:50700953-50700972 Msa0816390:intron 35.0%
AGTCGTTTCTCCAAACAAAT+AGG - chr5_3:50701018-50701037 None:intergenic 35.0%
AGACTGTTCATGAGAACTTA+TGG - chr5_3:50701221-50701240 None:intergenic 35.0%
! AATTTTAAGCCTCGCTGTTT+TGG + chr5_3:50701312-50701331 Msa0816390:intron 35.0%
!! TATCACCCAATGAAGTATTG+TGG - chr5_3:50701407-50701426 None:intergenic 35.0%
TTTGTTAGGAGTCCTACATT+GGG - chr5_3:50701532-50701551 None:intergenic 35.0%
! TTTTGTTAGGAGTCCTACAT+TGG - chr5_3:50701533-50701552 None:intergenic 35.0%
! ATGCATTTGTTGCAACTAAG+TGG + chr5_3:50701608-50701627 Msa0816390:intron 35.0%
! CAATAGCTTTTCGAAGCATA+AGG - chr5_3:50701792-50701811 None:intergenic 35.0%
CGTCACAAAAAACACAATCT+TGG - chr5_3:50701828-50701847 None:intergenic 35.0%
GAGGAGAGGCTAATAATAAA+AGG + chr5_3:50701975-50701994 Msa0816390:intron 35.0%
TTATTTGGCATGCGACAATT+TGG + chr5_3:50702017-50702036 Msa0816390:intron 35.0%
TATTTGGCATGCGACAATTT+GGG + chr5_3:50702018-50702037 Msa0816390:intron 35.0%
TATGGTGTAGTAGGAATGAA+AGG + chr5_3:50702044-50702063 Msa0816390:intron 35.0%
GATGTTTATCAATGTTGTGG+AGG + chr5_3:50702066-50702085 Msa0816390:intron 35.0%
AGACAATACCTTGATATCCT+CGG - chr5_3:50702107-50702126 None:intergenic 35.0%
!! AGGATATCAAGGTATTGTCT+TGG + chr5_3:50702107-50702126 Msa0816390:intron 35.0%
!! ATATCAAGGTATTGTCTTGG+AGG + chr5_3:50702110-50702129 Msa0816390:intron 35.0%
ACCACTCATAGAATAAGCAA+GGG - chr5_3:50702162-50702181 None:intergenic 35.0%
CTTATTCTATGAGTGGTGTT+GGG + chr5_3:50702165-50702184 Msa0816390:intron 35.0%
ACATTTGAATGCAATATCCC+GGG - chr5_3:50702192-50702211 None:intergenic 35.0%
!! AGGTGTTTATGTTTTGCTGT+CGG + chr5_3:50702225-50702244 Msa0816390:intron 35.0%
! AGTTTGTGTGTGTTTTTCGT+AGG + chr5_3:50702335-50702354 Msa0816390:intron 35.0%
CTGATCTACAAAATAATCCC+AGG - chr5_3:50702378-50702397 None:intergenic 35.0%
!! CTGGGATTATTTTGTAGATC+AGG + chr5_3:50702376-50702395 Msa0816390:intron 35.0%
!!! GATCAGGGTGTTTTGTTTTT+TGG + chr5_3:50702392-50702411 Msa0816390:intron 35.0%
! TGCTTCTTTAGTTTCACTTC+TGG + chr5_3:50702585-50702604 Msa0816390:intron 35.0%
ACAAAGGCAATACCTGAAAA+TGG + chr5_3:50702665-50702684 Msa0816390:CDS 35.0%
CAAAGGCAATACCTGAAAAT+GGG + chr5_3:50702666-50702685 Msa0816390:CDS 35.0%
!!! TTCATCGGCTTTTATTGGAA+AGG + chr5_3:50702853-50702872 Msa0816390:CDS 35.0%
GTTCGTTCTATACACTTTAC+AGG + chr5_3:50702898-50702917 Msa0816390:intron 35.0%
TTACTCGAGTATGAGATGTA+GGG - chr5_3:50702997-50703016 None:intergenic 35.0%
TAACACATTTCCCAAAGGAA+GGG + chr5_3:50703014-50703033 Msa0816390:intron 35.0%
GTGACATATTTCGTCATTGA+GGG - chr5_3:50703168-50703187 None:intergenic 35.0%
! AGGTGGTTAATTGACTTAAC+GGG - chr5_3:50703240-50703259 None:intergenic 35.0%
! GAGGTGGTTAATTGACTTAA+CGG - chr5_3:50703241-50703260 None:intergenic 35.0%
TTAACCACCTCTTAGAATTC+GGG + chr5_3:50703250-50703269 Msa0816390:intron 35.0%
CCCTACAAAATCAGCATATA+AGG + chr5_3:50703289-50703308 Msa0816390:intron 35.0%
CAAAATCAGCATATAAGGTG+AGG + chr5_3:50703294-50703313 Msa0816390:intron 35.0%
GTGTCATCATCTTTAATGGT+TGG - chr5_3:50703519-50703538 None:intergenic 35.0%
!! ACACCTTTGGGTTAATTTTG+AGG - chr5_3:50703673-50703692 None:intergenic 35.0%
ATAAGGTGATACACACCTTT+GGG - chr5_3:50703685-50703704 None:intergenic 35.0%
TATAAGGTGATACACACCTT+TGG - chr5_3:50703686-50703705 None:intergenic 35.0%
AAATATCACCTTAGATCACC+AGG + chr5_3:50703818-50703837 Msa0816390:intron 35.0%
GTCTTTACCCTCTGTAATAT+AGG + chr5_3:50703987-50704006 Msa0816390:intron 35.0%
GGAAATGACCTATATTACAG+AGG - chr5_3:50704230-50704249 None:intergenic 35.0%
!!! GTTTTGATTTACCCCCTAAT+AGG + chr5_3:50704072-50704091 Msa0816390:intron 35.0%
!! TTTTTGTTTGGCCTATTAGG+GGG - chr5_3:50704086-50704105 None:intergenic 35.0%
!! GTTTTTGTTTGGCCTATTAG+GGG - chr5_3:50704087-50704106 None:intergenic 35.0%
!! CGTTTTTGTTTGGCCTATTA+GGG - chr5_3:50704088-50704107 None:intergenic 35.0%
!! TCGTTTTTGTTTGGCCTATT+AGG - chr5_3:50704089-50704108 None:intergenic 35.0%
!!! GTTTTTTGTTTGGCCTACTA+GGG + chr5_3:50704138-50704157 Msa0816390:intron 35.0%
!!! TTTTTTGTTTGGCCTACTAG+GGG + chr5_3:50704139-50704158 Msa0816390:intron 35.0%
AAATTTACAGTGGGGAAAAC+CGG + chr5_3:50704209-50704228 Msa0816390:intron 35.0%
CCTGTAATATAGGTCATTTC+CGG - chr5_3:50704231-50704250 None:intergenic 35.0%
CGGAAATGACCTATATTACA+GGG + chr5_3:50704229-50704248 Msa0816390:intron 35.0%
GGAAATGACCTATATTACAG+GGG + chr5_3:50704230-50704249 Msa0816390:intron 35.0%
GAAATGACCTATATTACAGG+GGG + chr5_3:50704231-50704250 Msa0816390:intron 35.0%
AAATGACCTATATTACAGGG+GGG + chr5_3:50704232-50704251 Msa0816390:intron 35.0%
GCAGCAGAAATTACATAGTT+AGG - chr5_3:50704539-50704558 None:intergenic 35.0%
ACTATGTAATTTCTGCTGCT+TGG + chr5_3:50704540-50704559 Msa0816390:intron 35.0%
ACGATTATTGCAACATGTAC+AGG + chr5_3:50704641-50704660 Msa0816390:intron 35.0%
TTATTGCAACATGTACAGGT+TGG + chr5_3:50704645-50704664 Msa0816390:intron 35.0%
TATGCTTGCAGATATACTCA+AGG + chr5_3:50704686-50704705 Msa0816390:CDS 35.0%
AGACTTGGACTTAATCACAA+AGG + chr5_3:50704854-50704873 Msa0816390:CDS 35.0%
CGAACCATAATGAAAGATCT+TGG - chr5_3:50705000-50705019 None:intergenic 35.0%
GAGAAGGAATTCTGAGTATA+TGG + chr5_3:50705150-50705169 Msa0816390:CDS 35.0%
AAGGTTCTTCTCTCATCAAT+AGG + chr5_3:50705191-50705210 Msa0816390:intron 35.0%
AGGTTCTTCTCTCATCAATA+GGG + chr5_3:50705192-50705211 Msa0816390:intron 35.0%
AACGAAACAGAACACACTAT+CGG - chr5_3:50705239-50705258 None:intergenic 35.0%
TCATCACTAACTGAACCAAT+CGG + chr5_3:50705305-50705324 Msa0816390:intron 35.0%
!! TAATTTTGGAAGGCATACCT+TGG - chr5_3:50705480-50705499 None:intergenic 35.0%
TACTTATAGTTGAGTCCAGA+TGG - chr5_3:50705508-50705527 None:intergenic 35.0%
! TGTTGGTAGAAAATAGGCTT+AGG + chr5_3:50705591-50705610 Msa0816390:intron 35.0%
AAAATAGGCTTAGGTGGTTT+GGG + chr5_3:50705600-50705619 Msa0816390:intron 35.0%
TAGGAGAGTGAGATCAAAAT+AGG + chr5_3:50705667-50705686 Msa0816390:intron 35.0%
TATTCTTTGCAGGAATTCAG+CGG + chr5_3:50705901-50705920 Msa0816390:intron 35.0%
TACGGATCTTTCATTACTTC+AGG + chr5_3:50706008-50706027 Msa0816390:CDS 35.0%
!! ACACGAGTTTTATGGTTGTT+TGG - chr5_3:50706086-50706105 None:intergenic 35.0%
! TGATCTACACACGAGTTTTA+TGG - chr5_3:50706094-50706113 None:intergenic 35.0%
TGGCTTAAGAAAACAACTTG+CGG + chr5_3:50706258-50706277 Msa0816390:intron 35.0%
! CTTAACTCTAGCTTATGAAG+CGG - chr5_3:50706292-50706311 None:intergenic 35.0%
CTAACTCTGTGATATCTTTC+TGG + chr5_3:50706737-50706756 Msa0816390:intron 35.0%
! ATGTTTTTCTAAACGCTACG+CGG + chr5_3:50706806-50706825 Msa0816390:intron 35.0%
TTCAGAACAGTTTCCTTTGT+GGG - chr5_3:50706932-50706951 None:intergenic 35.0%
ATTCAGAACAGTTTCCTTTG+TGG - chr5_3:50706933-50706952 None:intergenic 35.0%
CTCTCCATTATTAGAACACT+TGG - chr5_3:50707047-50707066 None:intergenic 35.0%
GTCATTCTTTATCCAACATC+AGG + chr5_3:50707066-50707085 Msa0816390:three_prime_UTR 35.0%
TTGCTAGAAGAGATGTTGAT+TGG - chr5_3:50707155-50707174 None:intergenic 35.0%
TTGTTGGATTACTGTTTCGG+AGG - chr5_3:50700458-50700477 None:intergenic 40.0%
ATTGAAGAGCCATGGAAGAA+AGG - chr5_3:50700570-50700589 None:intergenic 40.0%
TTCTTTCTGCTTCACAAGTG+TGG + chr5_3:50700594-50700613 Msa0816390:CDS 40.0%
CTGAATTTAACTGAACCAGG+AGG - chr5_3:50700628-50700647 None:intergenic 40.0%
TGGCTGAATTTAACTGAACC+AGG - chr5_3:50700631-50700650 None:intergenic 40.0%
CCAACCCATTGTTAAAGCTT+CGG + chr5_3:50700648-50700667 Msa0816390:CDS 40.0%
CAACCCATTGTTAAAGCTTC+GGG + chr5_3:50700649-50700668 Msa0816390:CDS 40.0%
TTAGGAGGAGAATGAGATGA+AGG - chr5_3:50700679-50700698 None:intergenic 40.0%
CTCATTCTCCTCCTAATGTT+CGG + chr5_3:50700683-50700702 Msa0816390:CDS 40.0%
GTGAGTTTGACTCTCTCTTA+AGG - chr5_3:50700987-50701006 None:intergenic 40.0%
!! AGTTGTTTTCGTAAGCTAGC+TGG + chr5_3:50701144-50701163 Msa0816390:intron 40.0%
ATTGGGCCGAAAACAACTTA+TGG + chr5_3:50701179-50701198 Msa0816390:intron 40.0%
AGCGAGGCTTAAAATTCAAG+GGG - chr5_3:50701308-50701327 None:intergenic 40.0%
CAGCGAGGCTTAAAATTCAA+GGG - chr5_3:50701309-50701328 None:intergenic 40.0%
ACAGCGAGGCTTAAAATTCA+AGG - chr5_3:50701310-50701329 None:intergenic 40.0%
CATTGTTAGGAGTCTCACAT+TGG - chr5_3:50701348-50701367 None:intergenic 40.0%
TCAAACAGTGGTGCATTGTT+AGG - chr5_3:50701361-50701380 None:intergenic 40.0%
TCCACTCCACAATACTTCAT+TGG + chr5_3:50701398-50701417 Msa0816390:intron 40.0%
CCACTCCACAATACTTCATT+GGG + chr5_3:50701399-50701418 Msa0816390:intron 40.0%
GGGAAGTCTTACCTAAAAAG+TGG - chr5_3:50701512-50701531 None:intergenic 40.0%
TAGGTAAGACTTCCCAATGT+AGG + chr5_3:50701517-50701536 Msa0816390:intron 40.0%
! CATTTGTTGCAACTAAGTGG+AGG + chr5_3:50701611-50701630 Msa0816390:intron 40.0%
! AATTTGGGATGGTGCTTGAA+GGG + chr5_3:50701650-50701669 Msa0816390:intron 40.0%
! AGTTAGTCCTTTGGAGGAAA+AGG + chr5_3:50701675-50701694 Msa0816390:intron 40.0%
!! CCTTTGGAGGAAAAGGTATT+CGG + chr5_3:50701682-50701701 Msa0816390:intron 40.0%
!! CTTTGGAGGAAAAGGTATTC+GGG + chr5_3:50701683-50701702 Msa0816390:intron 40.0%
GAAAATGCTACCACCTTAGA+TGG - chr5_3:50701730-50701749 None:intergenic 40.0%
! CTAAGGTGGTAGCATTTTCT+TGG + chr5_3:50701731-50701750 Msa0816390:intron 40.0%
AGCATAAGGTTTCGTCTAGT+TGG - chr5_3:50701778-50701797 None:intergenic 40.0%
ACACAATCTTGGGAACTTTG+TGG - chr5_3:50701817-50701836 None:intergenic 40.0%
!! GGCATGGTCTTATGCTTATT+TGG + chr5_3:50702002-50702021 Msa0816390:intron 40.0%
ATGCGACAATTTGGGTGATA+TGG + chr5_3:50702026-50702045 Msa0816390:intron 40.0%
TTTGGGTGATATGGTGTAGT+AGG + chr5_3:50702035-50702054 Msa0816390:intron 40.0%
CCACTCATAGAATAAGCAAG+GGG - chr5_3:50702161-50702180 None:intergenic 40.0%
CACCACTCATAGAATAAGCA+AGG - chr5_3:50702163-50702182 None:intergenic 40.0%
GCTTATTCTATGAGTGGTGT+TGG + chr5_3:50702164-50702183 Msa0816390:intron 40.0%
! CATTCAAATGTAATGGGGCA+CGG + chr5_3:50702201-50702220 Msa0816390:intron 40.0%
!! GGTGTTTATGTTTTGCTGTC+GGG + chr5_3:50702226-50702245 Msa0816390:intron 40.0%
ACACAAACAGCACAAACCAA+GGG - chr5_3:50702290-50702309 None:intergenic 40.0%
AACACAAACAGCACAAACCA+AGG - chr5_3:50702291-50702310 None:intergenic 40.0%
ACAAACTGTGCACAAAACTC+AGG - chr5_3:50702322-50702341 None:intergenic 40.0%
!!! CAGGGTGTTTTGTTTTTTGG+TGG + chr5_3:50702395-50702414 Msa0816390:intron 40.0%
! GATTTTGTCCCAACTGTTAG+TGG + chr5_3:50702743-50702762 Msa0816390:CDS 40.0%
AAGAAAGGCCACTAACAGTT+GGG - chr5_3:50702754-50702773 None:intergenic 40.0%
AAAGAAAGGCCACTAACAGT+TGG - chr5_3:50702755-50702774 None:intergenic 40.0%
AACTGTTAGTGGCCTTTCTT+TGG + chr5_3:50702754-50702773 Msa0816390:CDS 40.0%
! TGATGCACCGGCATTTAAAA+AGG + chr5_3:50702778-50702797 Msa0816390:CDS 40.0%
TCTATACACTTTACAGGCGA+AGG + chr5_3:50702904-50702923 Msa0816390:intron 40.0%
GTTACTCGAGTATGAGATGT+AGG - chr5_3:50702998-50703017 None:intergenic 40.0%
TCGAGTAACACATTTCCCAA+AGG + chr5_3:50703009-50703028 Msa0816390:intron 40.0%
GTAACACATTTCCCAAAGGA+AGG + chr5_3:50703013-50703032 Msa0816390:intron 40.0%
GGTGACATATTTCGTCATTG+AGG - chr5_3:50703169-50703188 None:intergenic 40.0%
!! TGTCTATTTCTAACAGAGGC+TGG - chr5_3:50703195-50703214 None:intergenic 40.0%
! ATTGACTTAACGGGTCATGT+TGG - chr5_3:50703231-50703250 None:intergenic 40.0%
ACTCATACCCGAATTCTAAG+AGG - chr5_3:50703260-50703279 None:intergenic 40.0%
TTCCGTAAAACTGTAGAGCA+GGG - chr5_3:50703719-50703738 None:intergenic 40.0%
ATTCCGTAAAACTGTAGAGC+AGG - chr5_3:50703720-50703739 None:intergenic 40.0%
AGAACAAATTTCGTGCCTTC+AGG - chr5_3:50703850-50703869 None:intergenic 40.0%
! AGGCACGAAATTTGTTCTAG+AGG + chr5_3:50703852-50703871 Msa0816390:intron 40.0%
!! ATTTGTTCTAGAGGCGAACA+AGG + chr5_3:50703861-50703880 Msa0816390:intron 40.0%
!! GCATTCAGAGATGGGTTAAT+AGG + chr5_3:50703965-50703984 Msa0816390:intron 40.0%
!!! GGTTTTTTGTTTGGCCTACT+AGG + chr5_3:50704137-50704156 Msa0816390:intron 40.0%
!! TTTTTGTTTGGCCTACTAGG+GGG + chr5_3:50704140-50704159 Msa0816390:intron 40.0%
!!! TTTTGATTTACCCCCCTAGT+AGG - chr5_3:50704154-50704173 None:intergenic 40.0%
CCGGAAATGACCTATATTAC+AGG + chr5_3:50704228-50704247 Msa0816390:intron 40.0%
TCTTTACCCCCCTGTAATAT+AGG - chr5_3:50704241-50704260 None:intergenic 40.0%
CATGATAAGGGATCTCTGAA+GGG - chr5_3:50704272-50704291 None:intergenic 40.0%
TCATGATAAGGGATCTCTGA+AGG - chr5_3:50704273-50704292 None:intergenic 40.0%
! AACAACTCACCCCTTTCTTT+TGG + chr5_3:50704344-50704363 Msa0816390:intron 40.0%
AATAATACACGGTTCCTTGC+CGG + chr5_3:50704410-50704429 Msa0816390:intron 40.0%
AATGGAGCTACTCATCAAAC+CGG - chr5_3:50704432-50704451 None:intergenic 40.0%
TAGGGTAACAAATGCTAAGG+CGG - chr5_3:50704760-50704779 None:intergenic 40.0%
CCTTAGGGTAACAAATGCTA+AGG - chr5_3:50704763-50704782 None:intergenic 40.0%
! CCTTAGCATTTGTTACCCTA+AGG + chr5_3:50704760-50704779 Msa0816390:CDS 40.0%
TTTGTTACCCTAAGGAGTGA+TGG + chr5_3:50704768-50704787 Msa0816390:CDS 40.0%
! CCAAGTCTAGTTCATCTTCT+TGG - chr5_3:50704842-50704861 None:intergenic 40.0%
CCAAGAAGATGAACTAGACT+TGG + chr5_3:50704839-50704858 Msa0816390:CDS 40.0%
CAGGCCAAGATCTTTCATTA+TGG + chr5_3:50704993-50705012 Msa0816390:intron 40.0%
ATAAAGGAAGCCTCAGGTTA+GGG - chr5_3:50705109-50705128 None:intergenic 40.0%
! ACAAGGAGTAGTTTGAGGTT+TGG - chr5_3:50705425-50705444 None:intergenic 40.0%
AAACTACTCCTTGTTACCGA+AGG + chr5_3:50705431-50705450 Msa0816390:CDS 40.0%
! GATGGAGTGGTAATTTTGGA+AGG - chr5_3:50705490-50705509 None:intergenic 40.0%
TCCAAAATTACCACTCCATC+TGG + chr5_3:50705490-50705509 Msa0816390:intron 40.0%
! TCCAGATGGAGTGGTAATTT+TGG - chr5_3:50705494-50705513 None:intergenic 40.0%
TGGTAGAAAATAGGCTTAGG+TGG + chr5_3:50705594-50705613 Msa0816390:intron 40.0%
GAAAATAGGCTTAGGTGGTT+TGG + chr5_3:50705599-50705618 Msa0816390:intron 40.0%
CTTAACTCATTTGCATTGGG+TGG - chr5_3:50706219-50706238 None:intergenic 40.0%
CGAAACGGACCCTTAAATTT+AGG + chr5_3:50706541-50706560 Msa0816390:intron 40.0%
CGGTTAAAACTTGCAGAAAG+AGG + chr5_3:50706826-50706845 Msa0816390:intron 40.0%
TCAGTTCATGTGGTTGCATA+TGG + chr5_3:50707117-50707136 Msa0816390:three_prime_UTR 40.0%
TCTTCCATGGCTCTTCAATG+TGG + chr5_3:50700571-50700590 Msa0816390:exon 45.0%
AGAACCACATTGAAGAGCCA+TGG - chr5_3:50700578-50700597 None:intergenic 45.0%
! CCGAAGCTTTAACAATGGGT+TGG - chr5_3:50700651-50700670 None:intergenic 45.0%
GAGGCTGATGCATTGAAGAT+TGG + chr5_3:50700769-50700788 Msa0816390:intron 45.0%
TAAGCTAGCTGGAGAGCTTA+TGG + chr5_3:50701155-50701174 Msa0816390:intron 45.0%
AGCTGGAGAGCTTATGGAAT+TGG + chr5_3:50701161-50701180 Msa0816390:intron 45.0%
GCTGGAGAGCTTATGGAATT+GGG + chr5_3:50701162-50701181 Msa0816390:intron 45.0%
GATAGCTTACCAAAACAGCG+AGG - chr5_3:50701324-50701343 None:intergenic 45.0%
!! CCCAATGAAGTATTGTGGAG+TGG - chr5_3:50701402-50701421 None:intergenic 45.0%
AAACCTCCATCGTCAAAGTC+TGG + chr5_3:50701451-50701470 Msa0816390:intron 45.0%
AAGGGGTTCTCTCATCTAAG+AGG - chr5_3:50701477-50701496 None:intergenic 45.0%
! GCAGTAGCTCGACTTTTGTT+AGG - chr5_3:50701546-50701565 None:intergenic 45.0%
! CAATTTGGGATGGTGCTTGA+AGG + chr5_3:50701649-50701668 Msa0816390:intron 45.0%
! ATTTGGGATGGTGCTTGAAG+GGG + chr5_3:50701651-50701670 Msa0816390:intron 45.0%
TGAAGGGGAAGTTAGTCCTT+TGG + chr5_3:50701666-50701685 Msa0816390:intron 45.0%
! CCGAATACCTTTTCCTCCAA+AGG - chr5_3:50701685-50701704 None:intergenic 45.0%
CGGGTATTTATGGAAGAGTC+CGG + chr5_3:50701702-50701721 Msa0816390:intron 45.0%
ACATTGCCGAGTCATACCAA+AGG + chr5_3:50701879-50701898 Msa0816390:intron 45.0%
TCCACACCTTTGGTATGACT+CGG - chr5_3:50701888-50701907 None:intergenic 45.0%
! AGTCATACCAAAGGTGTGGA+GGG + chr5_3:50701888-50701907 Msa0816390:intron 45.0%
AAAATCACCCTCCACACCTT+TGG - chr5_3:50701898-50701917 None:intergenic 45.0%
! TGTGGAGGGTGATTTTCGAT+TGG + chr5_3:50701902-50701921 Msa0816390:intron 45.0%
TACTTGGGCAGTTGGAATGT+TGG + chr5_3:50701951-50701970 Msa0816390:intron 45.0%
TGTGGAGGAGAGTGATGTTA+TGG + chr5_3:50702081-50702100 Msa0816390:intron 45.0%
TGTTATGGCCGAGGATATCA+AGG + chr5_3:50702096-50702115 Msa0816390:intron 45.0%
!! TCAAGGTATTGTCTTGGAGG+TGG + chr5_3:50702113-50702132 Msa0816390:intron 45.0%
CCCCTTGCTTATTCTATGAG+TGG + chr5_3:50702158-50702177 Msa0816390:intron 45.0%
!! TTATGTTTTGCTGTCGGGAG+AGG + chr5_3:50702231-50702250 Msa0816390:intron 45.0%
!! CTTGTTCAGGGGTTTGGTTT+TGG + chr5_3:50702261-50702280 Msa0816390:intron 45.0%
! CGTAGGTGTGACAACTGTTT+TGG + chr5_3:50702352-50702371 Msa0816390:intron 45.0%
!!! TGTGACAACTGTTTTGGCCT+GGG + chr5_3:50702358-50702377 Msa0816390:intron 45.0%
GTGAAATGGCGAGCAAAGAA+GGG - chr5_3:50702465-50702484 None:intergenic 45.0%
AGTGAAATGGCGAGCAAAGA+AGG - chr5_3:50702466-50702485 None:intergenic 45.0%
GCCATTTCACTACTAGTGGT+GGG + chr5_3:50702475-50702494 Msa0816390:intron 45.0%
ACCCACCACTAGTAGTGAAA+TGG - chr5_3:50702479-50702498 None:intergenic 45.0%
AAATGGGAGCCCTGAAACAA+AGG + chr5_3:50702682-50702701 Msa0816390:CDS 45.0%
! GAGGCGATTCCTTTGTTTCA+GGG - chr5_3:50702694-50702713 None:intergenic 45.0%
! AGAGGCGATTCCTTTGTTTC+AGG - chr5_3:50702695-50702714 None:intergenic 45.0%
TGAAACAAAGGAATCGCCTC+TGG + chr5_3:50702694-50702713 Msa0816390:CDS 45.0%
! CCTGGAGCCTTTTTAAATGC+CGG - chr5_3:50702788-50702807 None:intergenic 45.0%
GCATTTAAAAAGGCTCCAGG+TGG + chr5_3:50702788-50702807 Msa0816390:CDS 45.0%
ATGCCTACAGCAACATTAGC+AGG - chr5_3:50702818-50702837 None:intergenic 45.0%
ATCCCGATTAGGAGGTTCAT+CGG + chr5_3:50702838-50702857 Msa0816390:CDS 45.0%
AAGCCGATGAACCTCCTAAT+CGG - chr5_3:50702844-50702863 None:intergenic 45.0%
!!! GGAGGTTCATCGGCTTTTAT+TGG + chr5_3:50702848-50702867 Msa0816390:CDS 45.0%
CCAAGCAATACCCTTCCTTT+GGG - chr5_3:50703027-50703046 None:intergenic 45.0%
ACCAAGCAATACCCTTCCTT+TGG - chr5_3:50703028-50703047 None:intergenic 45.0%
ATTTCTAACAGAGGCTGGCA+TGG - chr5_3:50703190-50703209 None:intergenic 45.0%
! CATACCCGAATTCTAAGAGG+TGG - chr5_3:50703257-50703276 None:intergenic 45.0%
! GCAGGGCACTCCAATTTATA+AGG - chr5_3:50703702-50703721 None:intergenic 45.0%
! TGCCCTGCTCTACAGTTTTA+CGG + chr5_3:50703714-50703733 Msa0816390:intron 45.0%
AGTCGTATGGCATTCAGAGA+TGG + chr5_3:50703956-50703975 Msa0816390:intron 45.0%
GTCGTATGGCATTCAGAGAT+GGG + chr5_3:50703957-50703976 Msa0816390:intron 45.0%
AAACTTTACAGGGGGGAAAC+CGG - chr5_3:50704019-50704038 None:intergenic 45.0%
!! TTTTGTTTGGCCTACTAGGG+GGG + chr5_3:50704141-50704160 Msa0816390:intron 45.0%
! GGGATCTCTGAAGGGTTAAT+AGG - chr5_3:50704264-50704283 None:intergenic 45.0%
!! CAGGTTGGTGAGGATGAATT+CGG + chr5_3:50704660-50704679 Msa0816390:intron 45.0%
TCGTTCTCCATCACTCCTTA+GGG - chr5_3:50704778-50704797 None:intergenic 45.0%
! TGGAGAAGCATATCAGCACT+GGG - chr5_3:50704822-50704841 None:intergenic 45.0%
! TTGGAGAAGCATATCAGCAC+TGG - chr5_3:50704823-50704842 None:intergenic 45.0%
TGTCTTATGACCCTAACCTG+AGG + chr5_3:50705096-50705115 Msa0816390:CDS 45.0%
CATAAAGGAAGCCTCAGGTT+AGG - chr5_3:50705110-50705129 None:intergenic 45.0%
CTAACCTGAGGCTTCCTTTA+TGG + chr5_3:50705108-50705127 Msa0816390:CDS 45.0%
CTATCTGCAGAAGGCCATAA+AGG - chr5_3:50705125-50705144 None:intergenic 45.0%
TCTCTAGCACTATCTGCAGA+AGG - chr5_3:50705134-50705153 None:intergenic 45.0%
TCTGCAGATAGTGCTAGAGA+AGG + chr5_3:50705134-50705153 Msa0816390:CDS 45.0%
GGAGACTGCAGATATCATCA+AGG + chr5_3:50705172-50705191 Msa0816390:CDS 45.0%
CGAACAACAGCATCATCGTA+TGG - chr5_3:50705389-50705408 None:intergenic 45.0%
! GGAGTAGTTTGAGGTTTGGA+TGG - chr5_3:50705421-50705440 None:intergenic 45.0%
CGGTAACAAGGAGTAGTTTG+AGG - chr5_3:50705430-50705449 None:intergenic 45.0%
ATAGTTGAGTCCAGATGGAG+TGG - chr5_3:50705503-50705522 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr5_3:50705810-50705829 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr5_3:50705811-50705830 None:intergenic 45.0%
CTCAAGTTTGCCAATGCTTG+TGG + chr5_3:50706866-50706885 Msa0816390:CDS 45.0%
AGTCAATGCACCACAAGCAT+TGG - chr5_3:50706879-50706898 None:intergenic 45.0%
AATACCAGCATTGCCCACAA+AGG + chr5_3:50706916-50706935 Msa0816390:CDS 45.0%
!! TTGAAAAAAAAAAATAAAAT+TGG + chr5_3:50704116-50704135 Msa0816390:intron 5.0%
!! TTATTATAAATAATAATACA+CGG + chr5_3:50704399-50704418 Msa0816390:intron 5.0%
!! ATTATATAACTTAAAATATT+AGG - chr5_3:50704467-50704486 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+TGG + chr5_3:50706116-50706135 Msa0816390:intron 5.0%
AGTGTGGTTTCTAACCCTCC+TGG + chr5_3:50700610-50700629 Msa0816390:CDS 50.0%
GGTCGTCAACTCTCAAACAG+TGG - chr5_3:50701373-50701392 None:intergenic 50.0%
AGTATTGTGGAGTGGACGTG+AGG - chr5_3:50701394-50701413 None:intergenic 50.0%
AAGAGGCCAGACTTTGACGA+TGG - chr5_3:50701460-50701479 None:intergenic 50.0%
AGGGGAAGTTAGTCCTTTGG+AGG + chr5_3:50701669-50701688 Msa0816390:intron 50.0%
! GAGTCATACCAAAGGTGTGG+AGG + chr5_3:50701887-50701906 Msa0816390:intron 50.0%
GTTGGAATGTTGGAGAGGAG+AGG + chr5_3:50701961-50701980 Msa0816390:intron 50.0%
! CAAATGTAATGGGGCACGGA+AGG + chr5_3:50702205-50702224 Msa0816390:intron 50.0%
!! AGAGGTGCAGGTCTTGTTCA+GGG + chr5_3:50702249-50702268 Msa0816390:intron 50.0%
!!! GGTTTGGTTTTGGTGTCCCT+TGG + chr5_3:50702271-50702290 Msa0816390:intron 50.0%
!!! GTGTGACAACTGTTTTGGCC+TGG + chr5_3:50702357-50702376 Msa0816390:intron 50.0%
!!! TGTTTTTTGGTGGCAGCGTG+TGG + chr5_3:50702405-50702424 Msa0816390:intron 50.0%
!!! GTTTTTTGGTGGCAGCGTGT+GGG + chr5_3:50702406-50702425 Msa0816390:intron 50.0%
GCTCGCCATTTCACTACTAG+TGG + chr5_3:50702471-50702490 Msa0816390:intron 50.0%
CGCCATTTCACTACTAGTGG+TGG + chr5_3:50702474-50702493 Msa0816390:intron 50.0%
! GTTTCAGGGCTCCCATTTTC+AGG - chr5_3:50702680-50702699 None:intergenic 50.0%
AACAAAGGAATCGCCTCTGG+TGG + chr5_3:50702697-50702716 Msa0816390:CDS 50.0%
!! TCGCCTCTGGTGGTTTGTTT+CGG + chr5_3:50702707-50702726 Msa0816390:CDS 50.0%
TCTCCGAAACAAACCACCAG+AGG - chr5_3:50702713-50702732 None:intergenic 50.0%
CCTTTCTTTGGCTGATGCAC+CGG + chr5_3:50702766-50702785 Msa0816390:CDS 50.0%
CCGGCATTTAAAAAGGCTCC+AGG + chr5_3:50702785-50702804 Msa0816390:CDS 50.0%
GCTCCTGCTAATGTTGCTGT+AGG + chr5_3:50702812-50702831 Msa0816390:CDS 50.0%
GCTGTAGGCATATCCCGATT+AGG + chr5_3:50702827-50702846 Msa0816390:CDS 50.0%
GTAGGCATATCCCGATTAGG+AGG + chr5_3:50702830-50702849 Msa0816390:CDS 50.0%
AGCCGATGAACCTCCTAATC+GGG - chr5_3:50702843-50702862 None:intergenic 50.0%
!! CCCAAAGGAAGGGTATTGCT+TGG + chr5_3:50703024-50703043 Msa0816390:intron 50.0%
TCACCAAGTGACTGCTTAGG+TGG - chr5_3:50703406-50703425 None:intergenic 50.0%
GGTTCAGTCCTGGTGATCTA+AGG - chr5_3:50703829-50703848 None:intergenic 50.0%
ATCACCAGGACTGAACCTGA+AGG + chr5_3:50703832-50703851 Msa0816390:intron 50.0%
AGCTACTCATCAAACCGGCA+AGG - chr5_3:50704427-50704446 None:intergenic 50.0%
!! GCAACATGTACAGGTTGGTG+AGG + chr5_3:50704650-50704669 Msa0816390:intron 50.0%
CTCGTTCTCCATCACTCCTT+AGG - chr5_3:50704779-50704798 None:intergenic 50.0%
! GGAGAAGCATATCAGCACTG+GGG - chr5_3:50704821-50704840 None:intergenic 50.0%
GCAAAGGCTGCAAAAGAAGC+TGG + chr5_3:50705065-50705084 Msa0816390:CDS 50.0%
AAGGCCATAAAGGAAGCCTC+AGG - chr5_3:50705115-50705134 None:intergenic 50.0%
CTTCTGCACCTTCGGTAACA+AGG - chr5_3:50705442-50705461 None:intergenic 50.0%
! CTTGTTACCGAAGGTGCAGA+AGG + chr5_3:50705440-50705459 Msa0816390:CDS 50.0%
AGGCTGCAGGTATTACACCA+AGG + chr5_3:50705460-50705479 Msa0816390:CDS 50.0%
CTTCGTACGACAGCATCTAC+AGG - chr5_3:50705634-50705653 None:intergenic 50.0%
TCGTACGAAGAGCAGATCAG+AGG + chr5_3:50705644-50705663 Msa0816390:intron 50.0%
ACGAAGAGCAGATCAGAGGT+AGG + chr5_3:50705648-50705667 Msa0816390:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr5_3:50705806-50705825 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr5_3:50705812-50705831 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr5_3:50705809-50705828 Msa0816390:intron 50.0%
GGAATTCAGCGGTAGAGTGA+CGG + chr5_3:50705912-50705931 Msa0816390:intron 50.0%
GAATTCAGCGGTAGAGTGAC+GGG + chr5_3:50705913-50705932 Msa0816390:CDS 50.0%
! TAGAGTGACGGGAATGAAGG+TGG + chr5_3:50705924-50705943 Msa0816390:CDS 50.0%
ACTCATTTGCATTGGGTGGC+AGG - chr5_3:50706215-50706234 None:intergenic 50.0%
!! GCATTGACTGTGACTGAGAG+AGG + chr5_3:50706890-50706909 Msa0816390:CDS 50.0%
GTTTCCTTTGTGGGCAATGC+TGG - chr5_3:50706923-50706942 None:intergenic 50.0%
AGGCCAGACTTTGACGATGG+AGG - chr5_3:50701457-50701476 None:intergenic 55.0%
GAAGAGTCCGGCTCCATCTA+AGG + chr5_3:50701714-50701733 Msa0816390:intron 55.0%
GCTACCACCTTAGATGGAGC+CGG - chr5_3:50701724-50701743 None:intergenic 55.0%
GCCGAGTCATACCAAAGGTG+TGG + chr5_3:50701884-50701903 Msa0816390:intron 55.0%
GGGCAGTTGGAATGTTGGAG+AGG + chr5_3:50701956-50701975 Msa0816390:intron 55.0%
GGAGAGTGATGTTATGGCCG+AGG + chr5_3:50702087-50702106 Msa0816390:intron 55.0%
! CTATGAGTGGTGTTGGGACC+CGG + chr5_3:50702171-50702190 Msa0816390:intron 55.0%
! TATGAGTGGTGTTGGGACCC+GGG + chr5_3:50702172-50702191 Msa0816390:intron 55.0%
!! GAGAGGTGCAGGTCTTGTTC+AGG + chr5_3:50702248-50702267 Msa0816390:intron 55.0%
!! GAGGTGCAGGTCTTGTTCAG+GGG + chr5_3:50702250-50702269 Msa0816390:intron 55.0%
!! GCAGGTCTTGTTCAGGGGTT+TGG + chr5_3:50702255-50702274 Msa0816390:intron 55.0%
CCGGTGCATCAGCCAAAGAA+AGG - chr5_3:50702769-50702788 None:intergenic 55.0%
!! ACATTAGCAGGAGCACCACC+TGG - chr5_3:50702806-50702825 None:intergenic 55.0%
ACACCAGCCAAGCATCTGCA+TGG + chr5_3:50703375-50703394 Msa0816390:intron 55.0%
CCAAGTGACTGCTTAGGTGG+TGG - chr5_3:50703403-50703422 None:intergenic 55.0%
CCACCACCTAAGCAGTCACT+TGG + chr5_3:50703400-50703419 Msa0816390:intron 55.0%
CGGTCACCAAGTGACTGCTT+AGG - chr5_3:50703409-50703428 None:intergenic 55.0%
! AAGCAGTCACTTGGTGACCG+TGG + chr5_3:50703409-50703428 Msa0816390:intron 55.0%
CAGGGTCAAAACGCATCCCT+TGG - chr5_3:50704728-50704747 None:intergenic 55.0%
!! CAAGGGATGCGTTTTGACCC+TGG + chr5_3:50704726-50704745 Msa0816390:CDS 55.0%
!! GCTACGTGTGCCGATTTGCA+TGG - chr5_3:50705041-50705060 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr5_3:50705798-50705817 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr5_3:50705797-50705816 Msa0816390:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr5_3:50705798-50705817 Msa0816390:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr5_3:50705804-50705823 Msa0816390:intron 55.0%
! CGGTAGAGTGACGGGAATGA+AGG + chr5_3:50705921-50705940 Msa0816390:CDS 55.0%
GTGGATGCAGTTGACACCAC+TGG + chr5_3:50705943-50705962 Msa0816390:CDS 55.0%
!! AAAAGCGTCACCAGCACCAG+TGG - chr5_3:50705962-50705981 None:intergenic 55.0%
!!! TGGTGCTGGTGACGCTTTTG+TGG + chr5_3:50705963-50705982 Msa0816390:CDS 55.0%
GAGTCCGGCTCCATCTAAGG+TGG + chr5_3:50701717-50701736 Msa0816390:intron 60.0%
! TTTGCTGTCGGGAGAGGTGC+AGG + chr5_3:50702237-50702256 Msa0816390:intron 60.0%
GTGCCATGCAGATGCTTGGC+TGG - chr5_3:50703381-50703400 None:intergenic 60.0%
!! GGTGGTGCCATGCAGATGCT+TGG - chr5_3:50703385-50703404 None:intergenic 60.0%
! CGTGCCTTCAGGTTCAGTCC+TGG - chr5_3:50703839-50703858 None:intergenic 60.0%
CTAAGGCGGTACGTGCACCA+GGG - chr5_3:50704746-50704765 None:intergenic 60.0%
GGCACACGTAGCTGCAGCAA+AGG + chr5_3:50705049-50705068 Msa0816390:CDS 60.0%
CCTGCAGCCTTCTGCACCTT+CGG - chr5_3:50705450-50705469 None:intergenic 60.0%
GCAGTTGACACCACTGGTGC+TGG + chr5_3:50705949-50705968 Msa0816390:CDS 60.0%
!! GCTGGTGACGCTTTTGTGGC+TGG + chr5_3:50705967-50705986 Msa0816390:CDS 60.0%
TGGCAGCGTGTGGGTCGCTT+TGG + chr5_3:50702415-50702434 Msa0816390:intron 65.0%
GCTAAGGCGGTACGTGCACC+AGG - chr5_3:50704747-50704766 None:intergenic 65.0%
! CCGAAGGTGCAGAAGGCTGC+AGG + chr5_3:50705447-50705466 Msa0816390:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 50700375 50707281 50700375 ID=Msa0816390;Name=Msa0816390
chr5_3 mRNA 50700375 50707281 50700375 ID=Msa0816390-mRNA-1;Parent=Msa0816390;Name=Msa0816390-mRNA-1;_AED=0.14;_eAED=0.14;_QI=202|1|1|1|1|1|7|305|385
chr5_3 exon 50700375 50700718 50700375 ID=Msa0816390-mRNA-1:exon:15214;Parent=Msa0816390-mRNA-1
chr5_3 exon 50702660 50702874 50702660 ID=Msa0816390-mRNA-1:exon:15215;Parent=Msa0816390-mRNA-1
chr5_3 exon 50704663 50704875 50704663 ID=Msa0816390-mRNA-1:exon:15216;Parent=Msa0816390-mRNA-1
chr5_3 exon 50704996 50705193 50704996 ID=Msa0816390-mRNA-1:exon:15217;Parent=Msa0816390-mRNA-1
chr5_3 exon 50705344 50705481 50705344 ID=Msa0816390-mRNA-1:exon:15218;Parent=Msa0816390-mRNA-1
chr5_3 exon 50705913 50706029 50705913 ID=Msa0816390-mRNA-1:exon:15219;Parent=Msa0816390-mRNA-1
chr5_3 exon 50706842 50707281 50706842 ID=Msa0816390-mRNA-1:exon:15220;Parent=Msa0816390-mRNA-1
chr5_3 five_prime_UTR 50700375 50700576 50700375 ID=Msa0816390-mRNA-1:five_prime_utr;Parent=Msa0816390-mRNA-1
chr5_3 CDS 50700577 50700718 50700577 ID=Msa0816390-mRNA-1:cds;Parent=Msa0816390-mRNA-1
chr5_3 CDS 50702660 50702874 50702660 ID=Msa0816390-mRNA-1:cds;Parent=Msa0816390-mRNA-1
chr5_3 CDS 50704663 50704875 50704663 ID=Msa0816390-mRNA-1:cds;Parent=Msa0816390-mRNA-1
chr5_3 CDS 50704996 50705193 50704996 ID=Msa0816390-mRNA-1:cds;Parent=Msa0816390-mRNA-1
chr5_3 CDS 50705344 50705481 50705344 ID=Msa0816390-mRNA-1:cds;Parent=Msa0816390-mRNA-1
chr5_3 CDS 50705913 50706029 50705913 ID=Msa0816390-mRNA-1:cds;Parent=Msa0816390-mRNA-1
chr5_3 CDS 50706842 50706976 50706842 ID=Msa0816390-mRNA-1:cds;Parent=Msa0816390-mRNA-1
chr5_3 three_prime_UTR 50706977 50707281 50706977 ID=Msa0816390-mRNA-1:three_prime_utr;Parent=Msa0816390-mRNA-1
Gene Sequence

>Msa0816390

ATGGCTCTTCAATGTGGTTCTTTCTGCTTCACAAGTGTGGTTTCTAACCCTCCTGGTTCAGTTAAATTCAGCCAACCCATTGTTAAAGCTTCGGGTTTTCCTTCATCTCATTCTCCTCCTAATGTTCGGTTGAATTTTAAAGGAAAGACAAAGGCAATACCTGAAAATGGGAGCCCTGAAACAAAGGAATCGCCTCTGGTGGTTTGTTTCGGAGAAATGCTCATTGATTTTGTCCCAACTGTTAGTGGCCTTTCTTTGGCTGATGCACCGGCATTTAAAAAGGCTCCAGGTGGTGCTCCTGCTAATGTTGCTGTAGGCATATCCCGATTAGGAGGTTCATCGGCTTTTATTGGAAAGGTTGGTGAGGATGAATTCGGATATATGCTTGCAGATATACTCAAGGAAAATAATGTAAACAGCCAAGGGATGCGTTTTGACCCTGGTGCACGTACCGCCTTAGCATTTGTTACCCTAAGGAGTGATGGAGAACGAGAGTTCATGTTTTATCGTAACCCCAGTGCTGATATGCTTCTCCAAGAAGATGAACTAGACTTGGACTTAATCACAAAGGCCAAGATCTTTCATTATGGTTCGATAAGTCTTATAACAGAACCATGCAAATCGGCACACGTAGCTGCAGCAAAGGCTGCAAAAGAAGCTGGTGTATTTCTGTCTTATGACCCTAACCTGAGGCTTCCTTTATGGCCTTCTGCAGATAGTGCTAGAGAAGGAATTCTGAGTATATGGGAGACTGCAGATATCATCAAGATTAGTGAAGAAGAGATTTCTTTTCTTACAAATGGTGAAGATCCATACGATGATGCTGTTGTTCGAAAAATTTTCCATCCAAACCTCAAACTACTCCTTGTTACCGAAGGTGCAGAAGGCTGCAGGTATTACACCAAGGAATTCAGCGGTAGAGTGACGGGAATGAAGGTGGATGCAGTTGACACCACTGGTGCTGGTGACGCTTTTGTGGCTGGAATACTATCACAATTAGCTACGGATCTTTCATTACTTCAGAAAGAGGAACAATTGAGAGAATCTCTCAAGTTTGCCAATGCTTGTGGTGCATTGACTGTGACTGAGAGAGGTGCAATACCAGCATTGCCCACAAAGGAAACTGTTCTGAATGCCCTGCTTAAACCTGTATCATAA

Protein sequence

>Msa0816390

MALQCGSFCFTSVVSNPPGSVKFSQPIVKASGFPSSHSPPNVRLNFKGKTKAIPENGSPETKESPLVVCFGEMLIDFVPTVSGLSLADAPAFKKAPGGAPANVAVGISRLGGSSAFIGKVGEDEFGYMLADILKENNVNSQGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEDELDLDLITKAKIFHYGSISLITEPCKSAHVAAAKAAKEAGVFLSYDPNLRLPLWPSADSAREGILSIWETADIIKISEEEISFLTNGEDPYDDAVVRKIFHPNLKLLLVTEGAEGCRYYTKEFSGRVTGMKVDAVDTTGAGDAFVAGILSQLATDLSLLQKEEQLRESLKFANACGALTVTERGAIPALPTKETVLNALLKPVS*