AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1081650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081650 MtrunA17_Chr7g0268531 97.489 438 8 1 1 438 1 435 0.0 875
Msa1081650 MtrunA17_Chr1g0196181 64.222 450 100 10 40 438 44 483 0.0 533
Msa1081650 MtrunA17_Chr8g0346171 67.399 273 81 3 35 307 87 351 8.68e-131 386
Msa1081650 MtrunA17_Chr7g0266501 63.799 279 96 1 30 308 69 342 4.88e-125 371
Msa1081650 MtrunA17_Chr4g0026251 63.910 266 87 1 28 293 66 322 2.84e-123 362
Msa1081650 MtrunA17_Chr2g0321541 62.774 274 97 1 35 308 50 318 1.57e-119 356
Msa1081650 MtrunA17_Chr7g0250591 73.301 206 48 2 102 307 14 212 3.37e-97 290
Msa1081650 MtrunA17_Chr5g0426461 61.146 157 57 1 102 258 16 168 2.40e-62 199
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081650 AT4G03100.1 66.197 355 93 4 30 358 39 392 2.95e-160 459
Msa1081650 AT2G46710.1 67.241 290 87 5 35 320 77 362 3.31e-134 394
Msa1081650 AT5G22400.1 64.085 284 96 2 29 312 87 364 1.53e-128 380
Msa1081650 AT3G11490.1 60.269 297 108 3 35 327 69 359 1.29e-121 361
Msa1081650 AT1G08340.1 63.265 245 90 0 63 307 1 245 2.17e-112 333

Find 103 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATCAGCTTTGCTTAAT+TGG 0.091752 7_2:+81478117 Msa1081650:CDS
CCAAATAGTTTAGTATATTT+TGG 0.131742 7_2:-81479461 None:intergenic
GTGCTTGTTAATCTATTCTT+AGG 0.184145 7_2:+81479520 Msa1081650:three_prime_UTR
CCAAAATATACTAAACTATT+TGG 0.214129 7_2:+81479461 Msa1081650:three_prime_UTR
TAATTGGGCTGTTGATCTTA+TGG 0.232844 7_2:+81478133 Msa1081650:CDS
GCTTAATTAAAGCATGGTTT+AGG 0.267143 7_2:+81477994 Msa1081650:CDS
AAGCATACCTGAGTCATATT+TGG 0.279990 7_2:-81478221 None:intergenic
CTTAATTAAAGCATGGTTTA+GGG 0.299820 7_2:+81477995 Msa1081650:CDS
TGTCGAGCCGTTTCTATAAC+TGG 0.304547 7_2:-81479146 None:intergenic
TTTCGTATAAATCCAGAAAA+TGG 0.307758 7_2:+81477897 Msa1081650:CDS
GTGTCTTTACTTTCTATTGA+TGG 0.311575 7_2:-81479202 None:intergenic
TGAAGAGGATTATAACAAAA+TGG 0.341839 7_2:+81478169 Msa1081650:CDS
AGAATGCTTCTTAGAACAAT+TGG 0.343443 7_2:+81479024 Msa1081650:CDS
CTTCCTTCAGGAGTGTTAGA+TGG 0.358229 7_2:+81478020 Msa1081650:CDS
AATTGCAGTGTTAGTGTGTT+TGG 0.363248 7_2:+81477654 Msa1081650:intron
CAATGTTTATCAATGTCATT+TGG 0.369356 7_2:-81477963 None:intergenic
CTTGTGTATACTTGATTAGT+AGG 0.370251 7_2:+81479369 Msa1081650:three_prime_UTR
CTAACATGCTTAACATTTGT+AGG 0.376675 7_2:-81476773 None:intergenic
TGAATCAGCTTTGCTTAATT+GGG 0.382771 7_2:+81478118 Msa1081650:CDS
AATTTGAGCTTCTTGTTGTC+AGG 0.386910 7_2:+81479296 Msa1081650:three_prime_UTR
TGGTTTAGGGAACTTCCTTC+AGG 0.390002 7_2:+81478008 Msa1081650:CDS
ATCTACCATCTCCACATCAT+TGG 0.394673 7_2:-81479224 None:intergenic
CAGACAGGAATCCTCAGTTT+TGG 0.410752 7_2:-81479119 None:intergenic
TTAAGCAAAGCTGATTCAAC+TGG 0.417940 7_2:-81478113 None:intergenic
TTAATCTATTCTTAGGGAGC+AGG 0.425234 7_2:+81479527 Msa1081650:three_prime_UTR
GTGAGTGGTGGATGCGGTGG+TGG 0.428914 7_2:+81476590 Msa1081650:CDS
TGCTTGTTAATCTATTCTTA+GGG 0.431102 7_2:+81479521 Msa1081650:three_prime_UTR
ATTAGCTACGAATTTCATCT+AGG 0.433903 7_2:+81479488 Msa1081650:three_prime_UTR
GAAGAGGAAGCAGAGACGGT+GGG 0.435397 7_2:+81476630 Msa1081650:CDS
ATTGATAAACATTGCTTGGC+TGG 0.436333 7_2:+81477972 Msa1081650:CDS
CAATGTTCTTATGATTCAAA+AGG 0.438953 7_2:+81477696 Msa1081650:CDS
CTGCATTAGTAACAGAATAG+TGG 0.443345 7_2:-81477730 None:intergenic
CTGCTGTTGCTGTTTCTTCG+CGG 0.447979 7_2:-81478844 None:intergenic
CACTATTCTGTTACTAATGC+AGG 0.459853 7_2:+81477731 Msa1081650:CDS
GTTCATCATCCAATGGAGAT+TGG 0.485515 7_2:+81476746 Msa1081650:CDS
TTGAGGGAGCAATTGAATAG+TGG 0.488849 7_2:+81477933 Msa1081650:CDS
AGGTACCTAGCACTAGGAAC+AGG 0.489014 7_2:-81476866 None:intergenic
AGAAGAGGAAGCAGAGACGG+TGG 0.489512 7_2:+81476629 Msa1081650:CDS
ATGCAGCTTCTTCAATGTTG+TGG 0.493347 7_2:-81478982 None:intergenic
AGAGCATTTGCAAGAAGAGT+TGG 0.497838 7_2:+81479087 Msa1081650:CDS
TCTATAACTGGAACTCAGAC+AGG 0.498474 7_2:-81479134 None:intergenic
TGCATTAGTAACAGAATAGT+GGG 0.498479 7_2:-81477729 None:intergenic
AGTAGTGTGAAGGGGAGAAG+AGG 0.499420 7_2:+81476614 Msa1081650:CDS
GCAGGAGAGGTTATACTCAC+AGG 0.501375 7_2:+81477749 Msa1081650:CDS
GCATGCATTAGAGCAGTTAG+TGG 0.503772 7_2:-81478770 None:intergenic
TTGCATTCAAGAACTTCCTC+AGG 0.507388 7_2:-81478050 None:intergenic
CTGCTCCTGTTCCTAGTGCT+AGG 0.511600 7_2:+81476861 Msa1081650:CDS
ATTATAACAAAATGGATGCT+AGG 0.516074 7_2:+81478177 Msa1081650:CDS
CGGTGGTGGTAGTAGTGTGA+AGG 0.516226 7_2:+81476604 Msa1081650:CDS
TGACATTGATAAACATTGCT+TGG 0.517324 7_2:+81477968 Msa1081650:CDS
TGGTGAAGAGGAACATTTGA+GGG 0.526583 7_2:+81477917 Msa1081650:CDS
GCAGCTAACATTAACGCTGC+TGG 0.527383 7_2:-81476665 None:intergenic
GTAGGCCATCCAATCTCCAT+TGG 0.529727 7_2:-81476755 None:intergenic
TGTGATGGGCTATGTTATGA+AGG 0.531758 7_2:-81476422 None:intergenic
GGGAGAAGAGGAAGCAGAGA+CGG 0.531767 7_2:+81476626 Msa1081650:CDS
ATACTCACAGGGAGGACTAA+AGG 0.532224 7_2:+81477761 Msa1081650:CDS
CATCCACCACTCACCATCAC+TGG 0.532322 7_2:-81476581 None:intergenic
ATTACTCTTGTGAACTTCAA+CGG 0.536185 7_2:-81476389 None:intergenic
CTGAGTTCCAGTTATAGAAA+CGG 0.539389 7_2:+81479139 Msa1081650:CDS
TAATCTATTCTTAGGGAGCA+GGG 0.543264 7_2:+81479528 Msa1081650:three_prime_UTR
ATCATCCAATGGAGATTGGA+TGG 0.548029 7_2:+81476750 Msa1081650:CDS
ACGGCGGAGATTACATCGTC+AGG 0.549741 7_2:-81476725 None:intergenic
ATGATCATCATAATCTAACT+TGG 0.553962 7_2:-81478948 None:intergenic
TTCTGTTACTAATGCAGGAG+AGG 0.557243 7_2:+81477736 Msa1081650:CDS
GGATGCTAGGAATATTGCTA+TGG 0.560041 7_2:+81478190 Msa1081650:CDS
TGGCTGGCTTAATTAAAGCA+TGG 0.562561 7_2:+81477988 Msa1081650:CDS
GAAGATGAGAGGACCAGTGA+TGG 0.565192 7_2:+81476568 Msa1081650:exon
GGCTGATGTTGTAGTTGAAG+AGG 0.571255 7_2:+81478154 Msa1081650:CDS
AGCTGCTTTGAAGAAATCAA+TGG 0.573568 7_2:+81476682 Msa1081650:CDS
AAATCCAGAAAATGGTGAAG+AGG 0.577700 7_2:+81477905 Msa1081650:CDS
ACATGAACTTCAAGCTCAAG+AGG 0.579188 7_2:-81476836 None:intergenic
GGTGGTGGTAGTAGTGTGAA+GGG 0.581088 7_2:+81476605 Msa1081650:CDS
AGACACCAATGATGTGGAGA+TGG 0.581128 7_2:+81479219 Msa1081650:CDS
ATGGTGAAGAGGAACATTTG+AGG 0.585254 7_2:+81477916 Msa1081650:CDS
ATGGTGAGTGGTGGATGCGG+TGG 0.589261 7_2:+81476587 Msa1081650:CDS
CTCCGCCGTTCATCATCCAA+TGG 0.590362 7_2:+81476739 Msa1081650:CDS
TAAAACGATCAAACGTAACA+TGG 0.594470 7_2:-81476796 None:intergenic
ATAAGAAGATAGTGTTTGTG+TGG 0.594668 7_2:+81476541 Msa1081650:five_prime_UTR
CTAGCACTAGGAACAGGAGC+AGG 0.596477 7_2:-81476860 None:intergenic
AAGTAAAGACACCAATGATG+TGG 0.596557 7_2:+81479213 Msa1081650:CDS
AGTCCATCTAACACTCCTGA+AGG 0.599306 7_2:-81478023 None:intergenic
CAGGAGAGGTTATACTCACA+GGG 0.599702 7_2:+81477750 Msa1081650:CDS
ATCTGATGAATGAGATGACA+TGG 0.603264 7_2:-81478876 None:intergenic
AAAGTAAGGTACCTAGCACT+AGG 0.611243 7_2:-81476872 None:intergenic
AAGAGGAAGCAGAGACGGTG+GGG 0.613368 7_2:+81476631 Msa1081650:CDS
TCTTAATTAGATGCAAACAA+AGG 0.614596 7_2:-81479274 None:intergenic
AACGGCTCGACAACAACTGA+GGG 0.615985 7_2:+81479157 Msa1081650:CDS
TGCTTTGAAGAAATCAATGG+TGG 0.618567 7_2:+81476685 Msa1081650:CDS
ATCAATGGTGGCTTGTAGTG+TGG 0.621546 7_2:+81476697 Msa1081650:CDS
AATCTCCATTGGATGATGAA+CGG 0.625225 7_2:-81476744 None:intergenic
GTGATGGTGAGTGGTGGATG+CGG 0.627794 7_2:+81476584 Msa1081650:CDS
AAACGGCTCGACAACAACTG+AGG 0.661142 7_2:+81479156 Msa1081650:CDS
GTGGTGGTAGTAGTGTGAAG+GGG 0.661573 7_2:+81476606 Msa1081650:CDS
CAACAAGAAATGTATACTAG+CGG 0.664805 7_2:+81478911 Msa1081650:CDS
GGACCAGTGATGGTGAGTGG+TGG 0.667309 7_2:+81476578 Msa1081650:CDS
CTCCATTGGATGATGAACGG+CGG 0.679903 7_2:-81476741 None:intergenic
GTTAGATGGACTTTCACCTG+AGG 0.686418 7_2:+81478034 Msa1081650:CDS
ACTAACTGCTCTAATGCATG+CGG 0.693394 7_2:+81478772 Msa1081650:CDS
AGAGGACCAGTGATGGTGAG+TGG 0.694819 7_2:+81476575 Msa1081650:CDS
GGAGAGTCCTACCAAAACTG+AGG 0.696781 7_2:+81479108 Msa1081650:CDS
TGTGTGGAGAAGAAGATGAG+AGG 0.729777 7_2:+81476557 Msa1081650:exon
GCATTAGTAACAGAATAGTG+GGG 0.751385 7_2:-81477728 None:intergenic
GAGAGGTTATACTCACAGGG+AGG 0.769530 7_2:+81477753 Msa1081650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAATTTGATTTTTGT+TGG + chr7_2:81477150-81477169 Msa1081650:intron 10.0%
!!! TTTTTAATTTGATTTTTGTT+GGG + chr7_2:81477151-81477170 Msa1081650:intron 10.0%
!!! AAAATTTTAATTATAGCAAT+TGG - chr7_2:81477559-81477578 None:intergenic 10.0%
!! AATTAAAAAATGAAAAAAGA+GGG - chr7_2:81477852-81477871 None:intergenic 10.0%
!! TAATTAAAAAATGAAAAAAG+AGG - chr7_2:81477853-81477872 None:intergenic 10.0%
!!! TTTTTAATTAATGAATTTTC+AGG + chr7_2:81477863-81477882 Msa1081650:intron 10.0%
!!! AAATTTTGATTTTGAATTTG+AGG - chr7_2:81476506-81476525 None:intergenic 15.0%
!! AAATGAAAAAGAAAAAAGTA+AGG - chr7_2:81476889-81476908 None:intergenic 15.0%
!! ACTAAAAGTTAGTAATTAAA+TGG + chr7_2:81477311-81477330 Msa1081650:intron 15.0%
!!! TTTTGTAGTAACATTTCAAT+GGG + chr7_2:81477099-81477118 Msa1081650:intron 20.0%
!!! AACTTTTCATCATCAAATAA+AGG - chr7_2:81477367-81477386 None:intergenic 20.0%
!!! AGTTTCTTTGATTTAATGAT+TGG + chr7_2:81477506-81477525 Msa1081650:intron 20.0%
!!! GTTTCTTTGATTTAATGATT+GGG + chr7_2:81477507-81477526 Msa1081650:intron 20.0%
!!! CATGATTTAATAATAGCTTT+TGG - chr7_2:81477582-81477601 None:intergenic 20.0%
!!! AGGGAAAAATATTTTATAGT+TGG - chr7_2:81477833-81477852 None:intergenic 20.0%
!! CAAAAACATTAAAACTTTAG+GGG - chr7_2:81478434-81478453 None:intergenic 20.0%
!! GCAAAAACATTAAAACTTTA+GGG - chr7_2:81478435-81478454 None:intergenic 20.0%
!! TGCAAAAACATTAAAACTTT+AGG - chr7_2:81478436-81478455 None:intergenic 20.0%
!!! CCAAATAGTTTAGTATATTT+TGG - chr7_2:81479464-81479483 None:intergenic 20.0%
!! CCAAAATATACTAAACTATT+TGG + chr7_2:81479461-81479480 Msa1081650:three_prime_UTR 20.0%
!!! TGTTCATGATCAAAATTTTA+TGG + chr7_2:81479590-81479609 Msa1081650:three_prime_UTR 20.0%
!!! GAGTTTTTGATGTTTTTGTT+GGG - chr7_2:81476481-81476500 None:intergenic 25.0%
!!! TGAGTTTTTGATGTTTTTGT+TGG - chr7_2:81476482-81476501 None:intergenic 25.0%
!!! TTACGTTTGATCGTTTTAAT+GGG + chr7_2:81476801-81476820 Msa1081650:CDS 25.0%
!! AAACTCGAGATTTTACTTAA+GGG + chr7_2:81477026-81477045 Msa1081650:intron 25.0%
! CTAAATTAGAAACCAACATT+TGG - chr7_2:81477079-81477098 None:intergenic 25.0%
!! GTTTTGTAGTAACATTTCAA+TGG + chr7_2:81477098-81477117 Msa1081650:intron 25.0%
! TTTGTAGTAACATTTCAATG+GGG + chr7_2:81477100-81477119 Msa1081650:intron 25.0%
! TTTCATATTATCCTTCAATG+AGG + chr7_2:81477260-81477279 Msa1081650:intron 25.0%
! ATGATGAAAAGTTTCCATAA+CGG + chr7_2:81477374-81477393 Msa1081650:intron 25.0%
! AAGAAACTTATTGTAAGTAG+TGG - chr7_2:81477494-81477513 None:intergenic 25.0%
! CAATGTTCTTATGATTCAAA+AGG + chr7_2:81477696-81477715 Msa1081650:CDS 25.0%
! TTTCGTATAAATCCAGAAAA+TGG + chr7_2:81477897-81477916 Msa1081650:CDS 25.0%
! CAATGTTTATCAATGTCATT+TGG - chr7_2:81477966-81477985 None:intergenic 25.0%
! CTTAATTAAAGCATGGTTTA+GGG + chr7_2:81477995-81478014 Msa1081650:CDS 25.0%
! TGAAGAGGATTATAACAAAA+TGG + chr7_2:81478169-81478188 Msa1081650:CDS 25.0%
! ATTATAACAAAATGGATGCT+AGG + chr7_2:81478177-81478196 Msa1081650:CDS 25.0%
! ATCATTTACACACAAAAATG+TGG - chr7_2:81478596-81478615 None:intergenic 25.0%
!! TTTTCAGTAAATTCATCACT+TGG - chr7_2:81478799-81478818 None:intergenic 25.0%
! ATGATCATCATAATCTAACT+TGG - chr7_2:81478951-81478970 None:intergenic 25.0%
! TCTTAATTAGATGCAAACAA+AGG - chr7_2:81479277-81479296 None:intergenic 25.0%
!! ATTTTGTGTTTTACAAGCAA+GGG + chr7_2:81479343-81479362 Msa1081650:three_prime_UTR 25.0%
!!! TAGTAGGTTTTTCTTGTTTT+TGG + chr7_2:81479385-81479404 Msa1081650:three_prime_UTR 25.0%
!! TGCTTGTTAATCTATTCTTA+GGG + chr7_2:81479521-81479540 Msa1081650:three_prime_UTR 25.0%
! AGATTGATTAAGCCTAAAAA+TGG + chr7_2:81479551-81479570 Msa1081650:three_prime_UTR 25.0%
ATTACTCTTGTGAACTTCAA+CGG - chr7_2:81476392-81476411 None:intergenic 30.0%
!!! GATGTTTGTTTTTGTGTGAT+GGG - chr7_2:81476439-81476458 None:intergenic 30.0%
!!! TGATGTTTGTTTTTGTGTGA+TGG - chr7_2:81476440-81476459 None:intergenic 30.0%
ATAAGAAGATAGTGTTTGTG+TGG + chr7_2:81476541-81476560 Msa1081650:five_prime_UTR 30.0%
CTAACATGCTTAACATTTGT+AGG - chr7_2:81476776-81476795 None:intergenic 30.0%
TAAAACGATCAAACGTAACA+TGG - chr7_2:81476799-81476818 None:intergenic 30.0%
! GTTACGTTTGATCGTTTTAA+TGG + chr7_2:81476800-81476819 Msa1081650:CDS 30.0%
!!! TGATCGTTTTAATGGGTTTT+TGG + chr7_2:81476808-81476827 Msa1081650:CDS 30.0%
!!! GATCGTTTTAATGGGTTTTT+GGG + chr7_2:81476809-81476828 Msa1081650:CDS 30.0%
! CAAACTCGAGATTTTACTTA+AGG + chr7_2:81477025-81477044 Msa1081650:intron 30.0%
TTACTTAAGGGATCTAAATC+CGG + chr7_2:81477038-81477057 Msa1081650:intron 30.0%
! GTTGGGTAAGATTTTATTGT+TGG + chr7_2:81477168-81477187 Msa1081650:intron 30.0%
AACTGAAAAAACCTCATTGA+AGG - chr7_2:81477274-81477293 None:intergenic 30.0%
!!! TTCAATGAGGTTTTTTCAGT+TGG + chr7_2:81477273-81477292 Msa1081650:intron 30.0%
AAAGGCAAATCTCAATAACT+TGG - chr7_2:81477349-81477368 None:intergenic 30.0%
TTGTAAGTAGTGGCATAAAA+CGG - chr7_2:81477484-81477503 None:intergenic 30.0%
TCACAAATCACATCAGAATA+TGG - chr7_2:81477626-81477645 None:intergenic 30.0%
TGCATTAGTAACAGAATAGT+GGG - chr7_2:81477732-81477751 None:intergenic 30.0%
! TATAGTTGGTTCACATAATC+TGG - chr7_2:81477819-81477838 None:intergenic 30.0%
!! TTAATGAATTTTCAGGCTGA+AGG + chr7_2:81477870-81477889 Msa1081650:intron 30.0%
TGACATTGATAAACATTGCT+TGG + chr7_2:81477968-81477987 Msa1081650:CDS 30.0%
GCTTAATTAAAGCATGGTTT+AGG + chr7_2:81477994-81478013 Msa1081650:CDS 30.0%
TTGAATCAGCTTTGCTTAAT+TGG + chr7_2:81478117-81478136 Msa1081650:CDS 30.0%
TGAATCAGCTTTGCTTAATT+GGG + chr7_2:81478118-81478137 Msa1081650:CDS 30.0%
AGAGCCTAATAAAATCATGT+GGG + chr7_2:81478297-81478316 Msa1081650:intron 30.0%
GCATTAAGCATAATTTCGTT+TGG - chr7_2:81478646-81478665 None:intergenic 30.0%
CATGCATGTGTAATATATAC+AGG - chr7_2:81478675-81478694 None:intergenic 30.0%
CAACAAGAAATGTATACTAG+CGG + chr7_2:81478911-81478930 Msa1081650:CDS 30.0%
AGAATGCTTCTTAGAACAAT+TGG + chr7_2:81479024-81479043 Msa1081650:CDS 30.0%
GTGTCTTTACTTTCTATTGA+TGG - chr7_2:81479205-81479224 None:intergenic 30.0%
! GATTTTGTGTTTTACAAGCA+AGG + chr7_2:81479342-81479361 Msa1081650:three_prime_UTR 30.0%
! TTTTGTGTTTTACAAGCAAG+GGG + chr7_2:81479344-81479363 Msa1081650:three_prime_UTR 30.0%
CTTGTGTATACTTGATTAGT+AGG + chr7_2:81479369-81479388 Msa1081650:three_prime_UTR 30.0%
! TTTTGGACACATACATAATC+AGG - chr7_2:81479447-81479466 None:intergenic 30.0%
ATTAGCTACGAATTTCATCT+AGG + chr7_2:81479488-81479507 Msa1081650:three_prime_UTR 30.0%
! GTGCTTGTTAATCTATTCTT+AGG + chr7_2:81479520-81479539 Msa1081650:three_prime_UTR 30.0%
!! ACATAACTAGCACCATTTTT+AGG - chr7_2:81479566-81479585 None:intergenic 30.0%
!! AGCTGCTTTGAAGAAATCAA+TGG + chr7_2:81476682-81476701 Msa1081650:CDS 35.0%
!! TGCTTTGAAGAAATCAATGG+TGG + chr7_2:81476685-81476704 Msa1081650:CDS 35.0%
AATCTCCATTGGATGATGAA+CGG - chr7_2:81476747-81476766 None:intergenic 35.0%
! GGGTAAGATTTTATTGTTGG+TGG + chr7_2:81477171-81477190 Msa1081650:intron 35.0%
AGTTTCCATAACGGTAATGT+AGG + chr7_2:81477383-81477402 Msa1081650:intron 35.0%
CAAATCCTACATTACCGTTA+TGG - chr7_2:81477391-81477410 None:intergenic 35.0%
AATTGCAGTGTTAGTGTGTT+TGG + chr7_2:81477654-81477673 Msa1081650:intron 35.0%
GCATTAGTAACAGAATAGTG+GGG - chr7_2:81477731-81477750 None:intergenic 35.0%
CTGCATTAGTAACAGAATAG+TGG - chr7_2:81477733-81477752 None:intergenic 35.0%
CACTATTCTGTTACTAATGC+AGG + chr7_2:81477731-81477750 Msa1081650:CDS 35.0%
AAATCCAGAAAATGGTGAAG+AGG + chr7_2:81477905-81477924 Msa1081650:CDS 35.0%
ATTGATAAACATTGCTTGGC+TGG + chr7_2:81477972-81477991 Msa1081650:CDS 35.0%
! TTAAGCAAAGCTGATTCAAC+TGG - chr7_2:81478116-81478135 None:intergenic 35.0%
TAATTGGGCTGTTGATCTTA+TGG + chr7_2:81478133-81478152 Msa1081650:CDS 35.0%
! TTTTGCTCCAAATATGACTC+AGG + chr7_2:81478214-81478233 Msa1081650:CDS 35.0%
AAGCATACCTGAGTCATATT+TGG - chr7_2:81478224-81478243 None:intergenic 35.0%
CAGAGCCTAATAAAATCATG+TGG + chr7_2:81478296-81478315 Msa1081650:intron 35.0%
! GGATCCCACATGATTTTATT+AGG - chr7_2:81478304-81478323 None:intergenic 35.0%
TTACACACAAAAATGTGGAG+TGG - chr7_2:81478591-81478610 None:intergenic 35.0%
ATCTGATGAATGAGATGACA+TGG - chr7_2:81478879-81478898 None:intergenic 35.0%
CTGAGTTCCAGTTATAGAAA+CGG + chr7_2:81479139-81479158 Msa1081650:CDS 35.0%
AAGTAAAGACACCAATGATG+TGG + chr7_2:81479213-81479232 Msa1081650:CDS 35.0%
! AATTTGAGCTTCTTGTTGTC+AGG + chr7_2:81479296-81479315 Msa1081650:three_prime_UTR 35.0%
TTAATCTATTCTTAGGGAGC+AGG + chr7_2:81479527-81479546 Msa1081650:three_prime_UTR 35.0%
TAATCTATTCTTAGGGAGCA+GGG + chr7_2:81479528-81479547 Msa1081650:three_prime_UTR 35.0%
!! TGTGATGGGCTATGTTATGA+AGG - chr7_2:81476425-81476444 None:intergenic 40.0%
GTTCATCATCCAATGGAGAT+TGG + chr7_2:81476746-81476765 Msa1081650:CDS 40.0%
ATCATCCAATGGAGATTGGA+TGG + chr7_2:81476750-81476769 Msa1081650:CDS 40.0%
ACATGAACTTCAAGCTCAAG+AGG - chr7_2:81476839-81476858 None:intergenic 40.0%
! AAAGTAAGGTACCTAGCACT+AGG - chr7_2:81476875-81476894 None:intergenic 40.0%
!! TGGAGATTATCAGTTGGTGA+TGG - chr7_2:81476961-81476980 None:intergenic 40.0%
GATCTAAATCCGGTTCCATT+CGG + chr7_2:81477048-81477067 Msa1081650:intron 40.0%
! CAACATTTGGTTAGTCCGAA+TGG - chr7_2:81477066-81477085 None:intergenic 40.0%
CATTCGGACTAACCAAATGT+TGG + chr7_2:81477064-81477083 Msa1081650:intron 40.0%
TTCTGTTACTAATGCAGGAG+AGG + chr7_2:81477736-81477755 Msa1081650:CDS 40.0%
! TGTTCCTCTTCACCATTTTC+TGG - chr7_2:81477912-81477931 None:intergenic 40.0%
ATGGTGAAGAGGAACATTTG+AGG + chr7_2:81477916-81477935 Msa1081650:CDS 40.0%
TGGTGAAGAGGAACATTTGA+GGG + chr7_2:81477917-81477936 Msa1081650:CDS 40.0%
TTGAGGGAGCAATTGAATAG+TGG + chr7_2:81477933-81477952 Msa1081650:CDS 40.0%
!! TGGCTGGCTTAATTAAAGCA+TGG + chr7_2:81477988-81478007 Msa1081650:CDS 40.0%
TTGCATTCAAGAACTTCCTC+AGG - chr7_2:81478053-81478072 None:intergenic 40.0%
GGATGCTAGGAATATTGCTA+TGG + chr7_2:81478190-81478209 Msa1081650:CDS 40.0%
GCATAAAACATCCAAATCCG+AGG - chr7_2:81478337-81478356 None:intergenic 40.0%
TAGATGAGATGACTCAAGCA+TGG - chr7_2:81478462-81478481 None:intergenic 40.0%
ACTAACTGCTCTAATGCATG+CGG + chr7_2:81478772-81478791 Msa1081650:CDS 40.0%
ATGCAGCTTCTTCAATGTTG+TGG - chr7_2:81478985-81479004 None:intergenic 40.0%
! AGAGCATTTGCAAGAAGAGT+TGG + chr7_2:81479087-81479106 Msa1081650:CDS 40.0%
TCTATAACTGGAACTCAGAC+AGG - chr7_2:81479137-81479156 None:intergenic 40.0%
ATCTACCATCTCCACATCAT+TGG - chr7_2:81479227-81479246 None:intergenic 40.0%
TGTGTGGAGAAGAAGATGAG+AGG + chr7_2:81476557-81476576 Msa1081650:exon 45.0%
! ATCAATGGTGGCTTGTAGTG+TGG + chr7_2:81476697-81476716 Msa1081650:CDS 45.0%
CACCAACTGATAATCTCCAC+CGG + chr7_2:81476962-81476981 Msa1081650:intron 45.0%
ACCAACTGATAATCTCCACC+GGG + chr7_2:81476963-81476982 Msa1081650:intron 45.0%
! TTGGTTAGTCCGAATGGAAC+CGG - chr7_2:81477060-81477079 None:intergenic 45.0%
CAGGAGAGGTTATACTCACA+GGG + chr7_2:81477750-81477769 Msa1081650:CDS 45.0%
ATACTCACAGGGAGGACTAA+AGG + chr7_2:81477761-81477780 Msa1081650:CDS 45.0%
TGGTTTAGGGAACTTCCTTC+AGG + chr7_2:81478008-81478027 Msa1081650:CDS 45.0%
!! CTTCCTTCAGGAGTGTTAGA+TGG + chr7_2:81478020-81478039 Msa1081650:CDS 45.0%
AGTCCATCTAACACTCCTGA+AGG - chr7_2:81478026-81478045 None:intergenic 45.0%
! GTTAGATGGACTTTCACCTG+AGG + chr7_2:81478034-81478053 Msa1081650:CDS 45.0%
GGCTGATGTTGTAGTTGAAG+AGG + chr7_2:81478154-81478173 Msa1081650:CDS 45.0%
CAAATCCGAGGTTGACGATT+TGG - chr7_2:81478325-81478344 None:intergenic 45.0%
CAAATCGTCAACCTCGGATT+TGG + chr7_2:81478323-81478342 Msa1081650:intron 45.0%
ATCTTGTGACTGCACGTAGT+CGG - chr7_2:81478377-81478396 None:intergenic 45.0%
GGGGTGAGTTTGACAGATTT+AGG - chr7_2:81478415-81478434 None:intergenic 45.0%
GCATGCATTAGAGCAGTTAG+TGG - chr7_2:81478773-81478792 None:intergenic 45.0%
!! CAGGAATCCTCAGTTTTGGT+AGG - chr7_2:81479118-81479137 None:intergenic 45.0%
! CAGACAGGAATCCTCAGTTT+TGG - chr7_2:81479122-81479141 None:intergenic 45.0%
TGTCGAGCCGTTTCTATAAC+TGG - chr7_2:81479149-81479168 None:intergenic 45.0%
AGACACCAATGATGTGGAGA+TGG + chr7_2:81479219-81479238 Msa1081650:CDS 45.0%
GAAGATGAGAGGACCAGTGA+TGG + chr7_2:81476568-81476587 Msa1081650:exon 50.0%
! GGTGGTGGTAGTAGTGTGAA+GGG + chr7_2:81476605-81476624 Msa1081650:CDS 50.0%
GTGGTGGTAGTAGTGTGAAG+GGG + chr7_2:81476606-81476625 Msa1081650:CDS 50.0%
AGTAGTGTGAAGGGGAGAAG+AGG + chr7_2:81476614-81476633 Msa1081650:CDS 50.0%
GCAGCTAACATTAACGCTGC+TGG - chr7_2:81476668-81476687 None:intergenic 50.0%
CTCCATTGGATGATGAACGG+CGG - chr7_2:81476744-81476763 None:intergenic 50.0%
GTAGGCCATCCAATCTCCAT+TGG - chr7_2:81476758-81476777 None:intergenic 50.0%
AGGTACCTAGCACTAGGAAC+AGG - chr7_2:81476869-81476888 None:intergenic 50.0%
TCCCGGTGGAGATTATCAGT+TGG - chr7_2:81476967-81476986 None:intergenic 50.0%
GCAGGAGAGGTTATACTCAC+AGG + chr7_2:81477749-81477768 Msa1081650:CDS 50.0%
GAGAGGTTATACTCACAGGG+AGG + chr7_2:81477753-81477772 Msa1081650:CDS 50.0%
AGGCTCTGCGATTTCTTGCA+GGG - chr7_2:81478284-81478303 None:intergenic 50.0%
TAGGCTCTGCGATTTCTTGC+AGG - chr7_2:81478285-81478304 None:intergenic 50.0%
GGGATCCAAATCGTCAACCT+CGG + chr7_2:81478317-81478336 Msa1081650:intron 50.0%
ACTGCACGTAGTCGGTATAC+GGG - chr7_2:81478369-81478388 None:intergenic 50.0%
GACTGCACGTAGTCGGTATA+CGG - chr7_2:81478370-81478389 None:intergenic 50.0%
!! CTGCTGTTGCTGTTTCTTCG+CGG - chr7_2:81478847-81478866 None:intergenic 50.0%
GGAGAGTCCTACCAAAACTG+AGG + chr7_2:81479108-81479127 Msa1081650:CDS 50.0%
AAACGGCTCGACAACAACTG+AGG + chr7_2:81479156-81479175 Msa1081650:CDS 50.0%
AACGGCTCGACAACAACTGA+GGG + chr7_2:81479157-81479176 Msa1081650:CDS 50.0%
! AGAGGACCAGTGATGGTGAG+TGG + chr7_2:81476575-81476594 Msa1081650:CDS 55.0%
CATCCACCACTCACCATCAC+TGG - chr7_2:81476584-81476603 None:intergenic 55.0%
!! GTGATGGTGAGTGGTGGATG+CGG + chr7_2:81476584-81476603 Msa1081650:CDS 55.0%
! CGGTGGTGGTAGTAGTGTGA+AGG + chr7_2:81476604-81476623 Msa1081650:CDS 55.0%
GGGAGAAGAGGAAGCAGAGA+CGG + chr7_2:81476626-81476645 Msa1081650:CDS 55.0%
AGAAGAGGAAGCAGAGACGG+TGG + chr7_2:81476629-81476648 Msa1081650:CDS 55.0%
GAAGAGGAAGCAGAGACGGT+GGG + chr7_2:81476630-81476649 Msa1081650:CDS 55.0%
AAGAGGAAGCAGAGACGGTG+GGG + chr7_2:81476631-81476650 Msa1081650:CDS 55.0%
ACGGCGGAGATTACATCGTC+AGG - chr7_2:81476728-81476747 None:intergenic 55.0%
CTCCGCCGTTCATCATCCAA+TGG + chr7_2:81476739-81476758 Msa1081650:CDS 55.0%
CTAGCACTAGGAACAGGAGC+AGG - chr7_2:81476863-81476882 None:intergenic 55.0%
CTGCTCCTGTTCCTAGTGCT+AGG + chr7_2:81476861-81476880 Msa1081650:CDS 55.0%
AAAGTAGTCGGTGGCCAGTC+AGG - chr7_2:81476992-81477011 None:intergenic 55.0%
ACCGACTACTTTCATCCGCG+CGG + chr7_2:81477000-81477019 Msa1081650:intron 55.0%
AATCTCGAGTTTGAGCCGCG+CGG - chr7_2:81477018-81477037 None:intergenic 55.0%
GGCTCTGCGATTTCTTGCAG+GGG - chr7_2:81478283-81478302 None:intergenic 55.0%
! GGACCAGTGATGGTGAGTGG+TGG + chr7_2:81476578-81476597 Msa1081650:CDS 60.0%
!! ATGGTGAGTGGTGGATGCGG+TGG + chr7_2:81476587-81476606 Msa1081650:CDS 60.0%
TCTCCACCGGGAAACCTGAC+TGG + chr7_2:81476975-81476994 Msa1081650:intron 60.0%
GCGCGGATGAAAGTAGTCGG+TGG - chr7_2:81477001-81477020 None:intergenic 60.0%
GCCGCGCGGATGAAAGTAGT+CGG - chr7_2:81477004-81477023 None:intergenic 60.0%
!! GTGAGTGGTGGATGCGGTGG+TGG + chr7_2:81476590-81476609 Msa1081650:CDS 65.0%
TGGCCAGTCAGGTTTCCCGG+TGG - chr7_2:81476981-81477000 None:intergenic 65.0%
CGGTGGCCAGTCAGGTTTCC+CGG - chr7_2:81476984-81477003 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 81476387 81479669 81476387 ID=Msa1081650;Name=Msa1081650
chr7_2 mRNA 81476387 81479669 81476387 ID=Msa1081650-mRNA-1;Parent=Msa1081650;Name=Msa1081650-mRNA-1;_AED=0.13;_eAED=0.13;_QI=185|1|1|1|1|1|4|375|438
chr7_2 exon 81476387 81476882 81476387 ID=Msa1081650-mRNA-1:exon:20853;Parent=Msa1081650-mRNA-1
chr7_2 exon 81477662 81477782 81477662 ID=Msa1081650-mRNA-1:exon:20854;Parent=Msa1081650-mRNA-1
chr7_2 exon 81477885 81478235 81477885 ID=Msa1081650-mRNA-1:exon:20855;Parent=Msa1081650-mRNA-1
chr7_2 exon 81478761 81479669 81478761 ID=Msa1081650-mRNA-1:exon:20856;Parent=Msa1081650-mRNA-1
chr7_2 five_prime_UTR 81476387 81476571 81476387 ID=Msa1081650-mRNA-1:five_prime_utr;Parent=Msa1081650-mRNA-1
chr7_2 CDS 81476572 81476882 81476572 ID=Msa1081650-mRNA-1:cds;Parent=Msa1081650-mRNA-1
chr7_2 CDS 81477662 81477782 81477662 ID=Msa1081650-mRNA-1:cds;Parent=Msa1081650-mRNA-1
chr7_2 CDS 81477885 81478235 81477885 ID=Msa1081650-mRNA-1:cds;Parent=Msa1081650-mRNA-1
chr7_2 CDS 81478761 81479294 81478761 ID=Msa1081650-mRNA-1:cds;Parent=Msa1081650-mRNA-1
chr7_2 three_prime_UTR 81479295 81479669 81479295 ID=Msa1081650-mRNA-1:three_prime_utr;Parent=Msa1081650-mRNA-1
Gene Sequence

>Msa1081650

ATGAGAGGACCAGTGATGGTGAGTGGTGGATGCGGTGGTGGTAGTAGTGTGAAGGGGAGAAGAGGAAGCAGAGACGGTGGGGAAGAAGTGTCGCCAGCAGCGTTAATGTTAGCTGCTTTGAAGAAATCAATGGTGGCTTGTAGTGTGGAGAGTCCTGACGATGTAATCTCCGCCGTTCATCATCCAATGGAGATTGGATGGCCTACAAATGTTAAGCATGTTAGCCATGTTACGTTTGATCGTTTTAATGGGTTTTTGGGTCTTCCTCTTGAGCTTGAAGTTCATGTTCCTGCTCCTGTTCCTAGTGCTAGTGTTAGTGTGTTTGGTGTCTCAGCAGAATCAATGCAATGTTCTTATGATTCAAAAGGAAACAGTGTCCCCACTATTCTGTTACTAATGCAGGAGAGGTTATACTCACAGGGAGGACTAAAGGCTGAAGGAATATTTCGTATAAATCCAGAAAATGGTGAAGAGGAACATTTGAGGGAGCAATTGAATAGTGGCATTGTGCCAAATGACATTGATAAACATTGCTTGGCTGGCTTAATTAAAGCATGGTTTAGGGAACTTCCTTCAGGAGTGTTAGATGGACTTTCACCTGAGGAAGTTCTTGAATGCAACACTGAAGAAGAATCTGTTGAGCTTGTGAAGCAGCTGAAACCAGTTGAATCAGCTTTGCTTAATTGGGCTGTTGATCTTATGGCTGATGTTGTAGTTGAAGAGGATTATAACAAAATGGATGCTAGGAATATTGCTATGGTTTTTGCTCCAAATATGACTCAGATGTCTGATCCACTAACTGCTCTAATGCATGCGGTCCAAGTGATGAATTTACTGAAAACACTGATATTGAAGACACTTCGAGACCGCGAAGAAACAGCAACAGCAGAATATTCATCCATGTCATCTCATTCATCAGATGAATATGACAGTCAACAAGAAATGTATACTAGCGGTGAATTGAAAAGAACCAAGTTAGATTATGATGATCATGTTGACTACAGCCACAACATTGAAGAAGCTGCATCTGCTCTAAGTGAGATAGAAGAATGCTTCTTAGAACAATTGGATGATGTTCAGACAAAACGATTCACAAAAGAAAAATCTGCAGAGCATTTGCAAGAAGAGTTGGAGAGTCCTACCAAAACTGAGGATTCCTGTCTGAGTTCCAGTTATAGAAACGGCTCGACAACAACTGAGGGATCAAATGCTGACACAAGTAGTCCATCAATAGAAAGTAAAGACACCAATGATGTGGAGATGGTAGATAAATTTAGTGATTCTGTTTCACTCTTGCCTTTGTTTGCATCTAATTAA

Protein sequence

>Msa1081650

MRGPVMVSGGCGGGSSVKGRRGSRDGGEEVSPAALMLAALKKSMVACSVESPDDVISAVHHPMEIGWPTNVKHVSHVTFDRFNGFLGLPLELEVHVPAPVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENGEEEHLREQLNSGIVPNDIDKHCLAGLIKAWFRELPSGVLDGLSPEEVLECNTEEESVELVKQLKPVESALLNWAVDLMADVVVEEDYNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLRDREETATAEYSSMSSHSSDEYDSQQEMYTSGELKRTKLDYDDHVDYSHNIEEAASALSEIEECFLEQLDDVQTKRFTKEKSAEHLQEELESPTKTEDSCLSSSYRNGSTTTEGSNADTSSPSIESKDTNDVEMVDKFSDSVSLLPLFASN*