AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0863780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0863780 MtrunA17_Chr5g0445571 97.278 551 12 1 1 551 1 548 0.0 1122
Msa0863780 MtrunA17_Chr3g0101151 60.145 552 186 10 1 548 1 522 0.0 634
Msa0863780 MtrunA17_Chr3g0090551 35.063 559 235 23 1 479 1 511 1.53e-62 218
Msa0863780 MtrunA17_Chr5g0396381 34.447 389 187 13 114 479 181 524 1.21e-46 173
Msa0863780 MtrunA17_Chr4g0020571 51.974 152 66 2 335 479 321 472 7.22e-38 148
Msa0863780 MtrunA17_Chr4g0020571 29.258 229 121 6 1 208 1 209 2.84e-16 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0863780 AT2G05160.2 42.531 569 258 16 1 544 1 525 5.20e-132 395
Msa0863780 AT2G05160.1 42.531 569 258 16 1 544 1 525 5.20e-132 395
Msa0863780 AT2G05160.3 46.960 477 211 12 1 466 1 446 7.86e-130 388
Msa0863780 AT3G52980.1 44.096 415 160 11 1 395 1 363 5.40e-103 315
Msa0863780 AT3G51950.1 32.124 579 255 20 1 546 1 474 4.85e-59 205
Msa0863780 AT3G51950.3 32.124 579 255 20 1 546 1 474 4.85e-59 205
Msa0863780 AT3G51950.2 32.124 579 255 20 1 546 1 474 4.85e-59 205
Msa0863780 AT3G51950.4 32.124 579 255 20 1 546 1 474 4.85e-59 205
Msa0863780 AT3G21100.2 33.075 517 262 20 1 479 1 471 6.94e-53 190
Msa0863780 AT3G21100.1 33.075 517 262 20 1 479 1 471 6.94e-53 190
Msa0863780 AT3G21100.4 33.012 518 262 20 1 479 1 472 2.23e-52 188
Msa0863780 AT3G21100.3 33.012 518 262 20 1 479 1 472 2.23e-52 188
Msa0863780 AT5G12440.4 36.943 314 143 13 187 479 231 510 5.29e-42 160
Msa0863780 AT5G12440.11 36.943 314 143 13 187 479 231 510 5.29e-42 160
Msa0863780 AT5G12440.12 36.943 314 143 13 187 479 231 510 5.29e-42 160
Msa0863780 AT5G12440.7 36.943 314 143 13 187 479 231 510 5.29e-42 160
Msa0863780 AT5G12440.1 36.943 314 143 13 187 479 231 510 5.29e-42 160
Msa0863780 AT5G12440.9 36.943 314 143 13 187 479 231 510 5.29e-42 160
Msa0863780 AT5G12440.2 36.943 314 143 13 187 479 231 510 5.29e-42 160
Msa0863780 AT5G12440.3 36.943 314 143 13 187 479 262 541 1.21e-41 159
Msa0863780 AT5G12440.10 36.943 314 143 13 187 479 262 541 1.21e-41 159
Msa0863780 AT5G12440.8 36.943 314 143 13 187 479 262 541 1.21e-41 159
Msa0863780 AT5G12440.5 36.943 314 143 13 187 479 262 541 1.21e-41 159
Msa0863780 AT5G12440.6 36.943 314 143 13 187 479 262 541 1.21e-41 159
Msa0863780 AT3G63450.6 51.656 151 57 3 329 479 39 173 6.46e-35 133
Msa0863780 AT1G51520.1 54.545 110 50 0 316 425 245 354 3.66e-34 134
Msa0863780 AT3G63450.2 53.103 145 52 3 335 479 153 281 5.68e-34 133
Msa0863780 AT3G63450.2 56.452 62 27 0 1 62 1 62 1.04e-13 73.6
Msa0863780 AT3G63450.1 53.103 145 52 3 335 479 153 281 5.68e-34 133
Msa0863780 AT3G63450.1 56.452 62 27 0 1 62 1 62 1.04e-13 73.6
Msa0863780 AT1G51520.2 54.545 110 50 0 316 425 245 354 7.19e-34 135
Msa0863780 AT3G63450.3 53.103 145 54 4 335 479 153 283 1.04e-33 132
Msa0863780 AT3G63450.3 56.452 62 27 0 1 62 1 62 1.05e-13 73.6
Msa0863780 AT3G63450.4 53.103 145 54 4 335 479 153 283 1.04e-33 132
Msa0863780 AT3G63450.4 56.452 62 27 0 1 62 1 62 1.05e-13 73.6
Msa0863780 AT3G63450.5 53.103 145 54 4 335 479 153 283 1.04e-33 132
Msa0863780 AT3G63450.5 56.452 62 27 0 1 62 1 62 1.05e-13 73.6
Msa0863780 AT3G63450.7 53.103 145 54 4 335 479 153 283 1.40e-33 132
Msa0863780 AT3G63450.7 56.452 62 27 0 1 62 1 62 1.18e-13 73.2
Msa0863780 AT1G51530.2 36.496 137 71 4 348 479 185 310 4.78e-12 68.6

Find 140 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCCATTTCACCTCATTT+TGG 0.145853 5_4:-63819770 Msa0863780:CDS
TGAAACTGTGAGAATGATTT+TGG 0.186946 5_4:-63822108 Msa0863780:CDS
CATCGGTGAAGTCGTCTTTA+AGG 0.237792 5_4:-63823311 Msa0863780:CDS
AAAGAGAGAGAAACAGAAAA+AGG 0.247509 5_4:-63824406 Msa0863780:five_prime_UTR
GATGTTTCTGCTGTCAATTT+TGG 0.256613 5_4:-63822974 Msa0863780:CDS
AAAATCATTCTCACAGTTTC+AGG 0.261214 5_4:+63822110 None:intergenic
TTCAAGTTCCATCTTCCTAT+TGG 0.269145 5_4:-63823165 Msa0863780:CDS
TGCAGATCATTTCAATTTCC+AGG 0.277618 5_4:-63819624 Msa0863780:intron
ACATAATACAGTTCTTCTTT+TGG 0.290842 5_4:-63818935 Msa0863780:three_prime_UTR
GAAAATGCTAGAAAGATTAT+TGG 0.297193 5_4:-63823400 Msa0863780:CDS
GTGTGCTTGTGAAACCTTAC+AGG 0.303127 5_4:-63822052 Msa0863780:CDS
TCCAATGGAAAATGATAAAT+AGG 0.307495 5_4:-63819043 Msa0863780:exon
CACCAGTTCCAGTTGCAAAA+AGG 0.309894 5_4:+63818825 None:intergenic
CTATGGTTCCCATAACTTCT+TGG 0.316770 5_4:+63819884 None:intergenic
ACAAACGCAATTGCTGAGTT+TGG 0.320917 5_4:-63823065 Msa0863780:CDS
CGGACAACATGCAGTGGTTC+TGG 0.321883 5_4:-63822441 Msa0863780:CDS
TCAAGTTCCATCTTCCTATT+GGG 0.324176 5_4:-63823164 Msa0863780:CDS
AAGAAAGAGTTTGTTGCCTT+TGG 0.325097 5_4:+63818963 None:intergenic
TAATTCATTCCCGTAAATTC+AGG 0.326064 5_4:+63823115 None:intergenic
ATACTATGATAAATATAAAA+AGG 0.328732 5_4:-63822666 Msa0863780:CDS
CAAAACTGATCTTCAAATAA+TGG 0.329252 5_4:-63823287 Msa0863780:CDS
CCTTGTTGAGGGTTGACATT+AGG 0.334473 5_4:+63823232 None:intergenic
CAATGCAAATCCTGAATTTA+CGG 0.340099 5_4:-63823125 Msa0863780:CDS
TGCCAGCAGAAAAGAATGTT+TGG 0.350390 5_4:-63822152 Msa0863780:CDS
CATTATTTGAAGATCAGTTT+TGG 0.350768 5_4:+63823288 None:intergenic
AAACCCAAAATGAGGTGAAA+TGG 0.352315 5_4:+63819766 None:intergenic
GGAATCAGTGTCAGTATTCT+TGG 0.353353 5_4:+63819565 None:intergenic
ATCTCTAAGTAGACAGTTGA+TGG 0.353788 5_4:-63819861 Msa0863780:CDS
GCTGAGTTTGGAGAATCATT+TGG 0.355136 5_4:-63823053 Msa0863780:CDS
CAGAACAATGCTTGAAGAAC+AGG 0.358987 5_4:+63824357 None:intergenic
AGAAATATGGCTGAAAGGTT+TGG 0.362866 5_4:-63818738 Msa0863780:three_prime_UTR
ACGGAGATAATGCCGGAAAA+TGG 0.364430 5_4:+63823203 None:intergenic
TTGGGTATGTTGAAGATGTT+AGG 0.367518 5_4:-63822181 Msa0863780:CDS
AACCTTTCAGAATGTGGTTA+TGG 0.370195 5_4:-63818638 Msa0863780:three_prime_UTR
ACCTTTGTCTTCTCCCTGTA+AGG 0.370558 5_4:+63822038 None:intergenic
AAAAGTTTACTATAGAAATA+TGG 0.373829 5_4:-63818794 Msa0863780:three_prime_UTR
CTAGAAAGAAAGCTGCTCAT+AGG 0.388511 5_4:+63818595 None:intergenic
TTATTCAACGCATGATTTAG+AGG 0.390101 5_4:+63819593 None:intergenic
TTGACATTAGGTGGCGGAAT+TGG 0.398675 5_4:+63823244 None:intergenic
AAATTCAGGATTTGCATTGC+TGG 0.403668 5_4:+63823129 None:intergenic
TTGGTGGAAAAGCTACAAAA+AGG 0.409932 5_4:-63822955 Msa0863780:CDS
TATGCAGTTCCAAGAAGTTA+TGG 0.410433 5_4:-63819893 Msa0863780:intron
AACAGCAAGACCTCGAGTTC+CGG 0.412720 5_4:+63823018 None:intergenic
AATGCAAATCCTGAATTTAC+GGG 0.416071 5_4:-63823124 Msa0863780:CDS
CTGATTCCTCTGGAGGGAAT+AGG 0.424239 5_4:-63819550 Msa0863780:intron
GCCAGCAGAAAAGAATGTTT+GGG 0.424611 5_4:-63822151 Msa0863780:CDS
AGCCAGCGACATGGTAAGTC+TGG 0.430698 5_4:-63822614 Msa0863780:CDS
TTTGGTTTCTAGAACATCCT+TGG 0.430976 5_4:-63818720 Msa0863780:three_prime_UTR
AGACAATGGCGAACAAGAAA+TGG 0.433416 5_4:-63823362 Msa0863780:CDS
GGAAATGCAAATGGACTGTC+GGG 0.437019 5_4:+63819063 None:intergenic
ATAGTATTCGGCTAATTGAT+AGG 0.438290 5_4:-63822559 Msa0863780:intron
ATCTGTCATTATTTCAGTAA+AGG 0.443297 5_4:-63822896 Msa0863780:CDS
TGCTCCAAAATACATTCAAA+AGG 0.443413 5_4:-63822411 Msa0863780:CDS
AACCCAAAATGAGGTGAAAT+GGG 0.452356 5_4:+63819767 None:intergenic
AATATTCAGCAAATATATAC+AGG 0.458344 5_4:-63818874 Msa0863780:three_prime_UTR
ACTGTCTACTTAGAGATCTA+TGG 0.458496 5_4:+63819867 None:intergenic
ATGCAGTTCCAAGAAGTTAT+GGG 0.460814 5_4:-63819892 Msa0863780:intron
TTGGTTTCTAGAACATCCTT+GGG 0.463267 5_4:-63818719 Msa0863780:three_prime_UTR
GGTAGATTGTGGATCCCAAT+AGG 0.466096 5_4:+63823150 None:intergenic
TCGCGCGACTCAATAGTATT+CGG 0.471471 5_4:-63822571 Msa0863780:CDS
TAGAAAGAAAGCTGCTCATA+GGG 0.476422 5_4:+63818596 None:intergenic
TCAGTGAAAGTGCTGTCAGC+TGG 0.477338 5_4:+63822338 None:intergenic
CAGTCCATTTGCATTTCCAA+TGG 0.489547 5_4:-63819058 Msa0863780:CDS
TTAGTTTCAGAAACAAATAC+AGG 0.489736 5_4:-63819013 Msa0863780:three_prime_UTR
AAATATATACAGGCTGAAGA+AGG 0.495810 5_4:-63818864 Msa0863780:three_prime_UTR
GATTTAGAGGTTCCGCAGCC+TGG 0.497491 5_4:+63819606 None:intergenic
AGGTGGCGGAATTGGCATCA+TGG 0.499716 5_4:+63823252 None:intergenic
TAATACTAGCAATGAGGATC+CGG 0.502530 5_4:-63822789 Msa0863780:CDS
CGAACAAGAAATGGCTAGGT+TGG 0.502766 5_4:-63823353 Msa0863780:CDS
CACAATTTACTCAACTAGCT+TGG 0.503729 5_4:-63818910 Msa0863780:three_prime_UTR
ATTTACGGGAATGAATTACA+TGG 0.507052 5_4:-63823110 Msa0863780:CDS
GACAGTTTCTCTTATATGCA+TGG 0.510255 5_4:-63822821 Msa0863780:CDS
AATGGCTTAAACCTTGTTGA+GGG 0.515579 5_4:+63823221 None:intergenic
ACTATAGAAATATGGCTGAA+AGG 0.519836 5_4:-63818743 Msa0863780:three_prime_UTR
CATTTGGATCATGTGAATAC+CGG 0.523621 5_4:-63823037 Msa0863780:CDS
GCTGTTAATGATTACAACAA+TGG 0.523781 5_4:-63823001 Msa0863780:CDS
TATAGAAATATGGCTGAAGA+AGG 0.525069 5_4:-63818784 Msa0863780:three_prime_UTR
CAGGAGGTACCATGATAGAA+TGG 0.527118 5_4:-63820127 Msa0863780:CDS
CAGAGTGCTCCATTCTATCA+TGG 0.527589 5_4:+63820118 None:intergenic
TGTTGAGGGTTGACATTAGG+TGG 0.528211 5_4:+63823235 None:intergenic
TCATTTCAATTTCCAGGCTG+CGG 0.529484 5_4:-63819618 Msa0863780:CDS
AATACTGACACTGATTCCTC+TGG 0.530154 5_4:-63819560 Msa0863780:CDS
GGAAATCCTCATTATGTTCG+TGG 0.530432 5_4:-63822080 Msa0863780:CDS
TTGGACAACCTTTCAGAATG+TGG 0.530767 5_4:-63818644 Msa0863780:three_prime_UTR
AAATGAGGTGAAATGGGAAA+AGG 0.531747 5_4:+63819773 None:intergenic
GTCAATTGCTTCGCTGCCGA+TGG 0.532551 5_4:-63822690 Msa0863780:CDS
GATTCAAACTTTATAAGTAG+AGG 0.533870 5_4:+63824531 None:intergenic
GCTCCAAAATACATTCAAAA+GGG 0.534969 5_4:-63822410 Msa0863780:CDS
AGTAAAGGTTACTGTAGGCA+TGG 0.535811 5_4:-63822881 Msa0863780:CDS
TGGAAATGCAAATGGACTGT+CGG 0.541995 5_4:+63819062 None:intergenic
ACTTCACCGATGATGTGGTC+AGG 0.542534 5_4:+63823322 None:intergenic
GAGGATCCGGTGATTTCACC+AGG 0.545221 5_4:-63822776 Msa0863780:CDS
TGACAGCACTTTCACTGAAG+AGG 0.547716 5_4:-63822333 Msa0863780:CDS
AAATGGCTTAAACCTTGTTG+AGG 0.548876 5_4:+63823220 None:intergenic
ATTTCAGTAAAGGTTACTGT+AGG 0.554494 5_4:-63822886 Msa0863780:CDS
TGAAATGGGAAAAGGTCGTC+GGG 0.556222 5_4:+63819781 None:intergenic
TGTTAGCAAGATAAGAGCTA+TGG 0.556939 5_4:-63823476 Msa0863780:exon
TCTTGTCCTGACCACATCAT+CGG 0.557055 5_4:-63823328 Msa0863780:CDS
TGTGGATCCCAATAGGAAGA+TGG 0.559950 5_4:+63823157 None:intergenic
ATCCATAACCACATTCTGAA+AGG 0.561674 5_4:+63818636 None:intergenic
AGCCAGACTTACCATGTCGC+TGG 0.562095 5_4:+63822612 None:intergenic
AGAAGACAAAGGTTGTTGAA+AGG 0.562426 5_4:-63822028 Msa0863780:intron
TCGATATTTGCAAAGTGATG+TGG 0.563281 5_4:+63820087 None:intergenic
GGCAGCGAAGCAATTGACAT+TGG 0.563893 5_4:+63822695 None:intergenic
CGAGAGCCACGAACATAATG+AGG 0.570909 5_4:+63822074 None:intergenic
GGAACTCTCAACGCATCCAT+AGG 0.573720 5_4:+63819743 None:intergenic
TGAAAGTTCAGCGGTGAAGA+CGG 0.575317 5_4:+63823184 None:intergenic
TATTTATCATAGTATGCCAT+CGG 0.579740 5_4:+63822674 None:intergenic
TTTGCATTGCTGGTAGATTG+TGG 0.579975 5_4:+63823139 None:intergenic
TCCATAGGAAACCCAAAATG+AGG 0.584131 5_4:+63819758 None:intergenic
GTTAGAACAGTGGAGGCCAA+AGG 0.587413 5_4:-63818979 Msa0863780:three_prime_UTR
ATGGCGAACAAGAAATGGCT+AGG 0.597763 5_4:-63823357 Msa0863780:CDS
AAATAATGACAGATCTTGAG+TGG 0.598237 5_4:+63822905 None:intergenic
GTGAAATGGGAAAAGGTCGT+CGG 0.599339 5_4:+63819780 None:intergenic
AATATATACAGGCTGAAGAA+GGG 0.600066 5_4:-63818863 Msa0863780:three_prime_UTR
TGGTTGATTTACAGGCCTCA+CGG 0.603591 5_4:-63822461 Msa0863780:intron
TCTATCTGAGCTAGTGACCC+TGG 0.610875 5_4:+63822758 None:intergenic
AGACGACTTCACCGATGATG+TGG 0.612232 5_4:+63823317 None:intergenic
AGTGACCCTGGTGAAATCAC+CGG 0.612483 5_4:+63822770 None:intergenic
ACTGACACTGATTCCTCTGG+AGG 0.617261 5_4:-63819557 Msa0863780:CDS
CCTAATGTCAACCCTCAACA+AGG 0.617801 5_4:-63823232 Msa0863780:CDS
CATGTGAATACCGGAACTCG+AGG 0.623739 5_4:-63823028 Msa0863780:CDS
GGTGAAGACGGAGATAATGC+CGG 0.634024 5_4:+63823196 None:intergenic
TGAGGGTTGACATTAGGTGG+CGG 0.637168 5_4:+63823238 None:intergenic
TGTATACCTATTCCCTCCAG+AGG 0.656241 5_4:+63819544 None:intergenic
TAATGATAATACTAGCAATG+AGG 0.661063 5_4:-63822795 Msa0863780:CDS
GCCTCACGGACAACATGCAG+TGG 0.661109 5_4:-63822447 Msa0863780:CDS
GTACAGAGTTAGAACAGTGG+AGG 0.665498 5_4:-63818986 Msa0863780:three_prime_UTR
CTGACACTGATTCCTCTGGA+GGG 0.669158 5_4:-63819556 Msa0863780:CDS
ACCACTGCATGTTGTCCGTG+AGG 0.679392 5_4:+63822446 None:intergenic
TGTGCTTGTGAAACCTTACA+GGG 0.679592 5_4:-63822051 Msa0863780:CDS
ACCTTACAGGGAGAAGACAA+AGG 0.680060 5_4:-63822039 Msa0863780:CDS
GATGGAACTTGAAAGTTCAG+CGG 0.682151 5_4:+63823175 None:intergenic
TTAACTGAGAGCCAGCGACA+TGG 0.684743 5_4:-63822623 Msa0863780:CDS
AAAGGTTACTGTAGGCATGG+AGG 0.699149 5_4:-63822878 Msa0863780:CDS
GAAGTACAGAGTTAGAACAG+TGG 0.699941 5_4:-63818989 Msa0863780:three_prime_UTR
ATATAAGAGAAACTGTCGTG+AGG 0.723379 5_4:+63822827 None:intergenic
GATGCGTTGAGAGTTCCAGA+TGG 0.726483 5_4:-63819737 Msa0863780:intron
GAAATGCAAATGGACTGTCG+GGG 0.728060 5_4:+63819064 None:intergenic
AGGATCCGGTGATTTCACCA+GGG 0.749562 5_4:-63822775 Msa0863780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTTTTTGTTTTATTT+TGG - chr5_4:63818789-63818808 Msa0863780:three_prime_UTR 10.0%
!!! TTTTTTTTTTTTGTTTTGAA+CGG - chr5_4:63819051-63819070 Msa0863780:CDS 10.0%
!! ATACTATGATAAATATAAAA+AGG - chr5_4:63820375-63820394 Msa0863780:intron 10.0%
!!! AAGTAAATTATTACATTTTT+TGG - chr5_4:63820748-63820767 Msa0863780:intron 10.0%
!!! TTATTTTTCAAAAAATGTTT+AGG - chr5_4:63821359-63821378 Msa0863780:intron 10.0%
!! TCTTTAATAATTATTAACTT+CGG - chr5_4:63822882-63822901 Msa0863780:CDS 10.0%
!! ATTTCAAGATTAAAATCTAA+AGG + chr5_4:63819005-63819024 None:intergenic 15.0%
!! TTAGTGAATAAAAAAACAAT+AGG + chr5_4:63819513-63819532 None:intergenic 15.0%
!! ATTATACGTATTAGTAAATT+TGG - chr5_4:63820808-63820827 Msa0863780:intron 15.0%
!!! TCTTTTCTTTTTGATAATAA+AGG - chr5_4:63821049-63821068 Msa0863780:intron 15.0%
!!! ATATTATAGTTCCTTATTTA+TGG - chr5_4:63821621-63821640 Msa0863780:intron 15.0%
!! ATAAATTATACAAGTTTGAA+GGG - chr5_4:63822671-63822690 Msa0863780:CDS 15.0%
!!! AATTGTTTTAGTACTAAAAT+GGG + chr5_4:63823547-63823566 None:intergenic 15.0%
!!! AAATTGTTTTAGTACTAAAA+TGG + chr5_4:63823548-63823567 None:intergenic 15.0%
!! AAAAGTTTACTATAGAAATA+TGG - chr5_4:63824247-63824266 Msa0863780:intron 15.0%
!!! GTTTTTTAACTATAGAAATA+TGG - chr5_4:63824290-63824309 Msa0863780:intron 15.0%
!!! AAATAACTAGCTATATTTTT+TGG - chr5_4:63824378-63824397 Msa0863780:five_prime_UTR 15.0%
!!! AGTATTTTAAGATCTTTATA+TGG - chr5_4:63824503-63824522 Msa0863780:five_prime_UTR 15.0%
!!! GTGTTAAGTGTATTTATTTT+CGG + chr5_4:63818549-63818568 None:intergenic 20.0%
!!! ATTTTGGATTGTTTTGTAAA+AGG - chr5_4:63818805-63818824 Msa0863780:three_prime_UTR 20.0%
!!! TTTTGGATTGTTTTGTAAAA+GGG - chr5_4:63818806-63818825 Msa0863780:three_prime_UTR 20.0%
!!! TTAGTTCTTTAACATTTTGT+TGG - chr5_4:63818870-63818889 Msa0863780:three_prime_UTR 20.0%
!!! TAGTTCTTTAACATTTTGTT+GGG - chr5_4:63818871-63818890 Msa0863780:three_prime_UTR 20.0%
!! TTGAATTGTTATCATGAAAA+TGG - chr5_4:63818930-63818949 Msa0863780:three_prime_UTR 20.0%
!! TGAATTGTTATCATGAAAAT+GGG - chr5_4:63818931-63818950 Msa0863780:three_prime_UTR 20.0%
!!! TATTTTCTATTGTTGGTTTT+TGG - chr5_4:63819185-63819204 Msa0863780:intron 20.0%
!!! TTATTTTAACTTGTTTCTGT+TGG - chr5_4:63819442-63819461 Msa0863780:intron 20.0%
!! ATTATCAAAAAGAAAAGACA+AGG + chr5_4:63821047-63821066 None:intergenic 20.0%
!! ATTTATGCTTCTGATTTAAA+TGG - chr5_4:63821154-63821173 Msa0863780:intron 20.0%
!! TTTATGCTTCTGATTTAAAT+GGG - chr5_4:63821155-63821174 Msa0863780:intron 20.0%
!!! TTTTCATTGATTATTGACAA+AGG - chr5_4:63821517-63821536 Msa0863780:intron 20.0%
!!! TTTCATTGATTATTGACAAA+GGG - chr5_4:63821518-63821537 Msa0863780:intron 20.0%
!! AACTTTACAAGCATAAATTA+TGG + chr5_4:63821781-63821800 None:intergenic 20.0%
!! AATTTATGCTTGTAAAGTTA+TGG - chr5_4:63821782-63821801 Msa0863780:intron 20.0%
!! ATAGTAATTGAGAGAATAAA+TGG + chr5_4:63822084-63822103 None:intergenic 20.0%
!!! TATAGTTTTTAAATGTTGTG+AGG - chr5_4:63822101-63822120 Msa0863780:CDS 20.0%
!! CATAAATTATACAAGTTTGA+AGG - chr5_4:63822670-63822689 Msa0863780:CDS 20.0%
!!! ATCATAACTTTGCATATTTT+AGG + chr5_4:63822736-63822755 None:intergenic 20.0%
!!! CACTGACAAATATAATATTT+TGG - chr5_4:63822841-63822860 Msa0863780:CDS 20.0%
!! TTAAAGAAAACATTCATCAT+AGG + chr5_4:63822869-63822888 None:intergenic 20.0%
!!! AAGCTATGAATTGTTTTTTT+AGG + chr5_4:63823020-63823039 None:intergenic 20.0%
!! TAAAAAACAAAAAACCTTAC+TGG - chr5_4:63823060-63823079 Msa0863780:CDS 20.0%
!! AATATGATTTATGTCAAGAA+AGG + chr5_4:63823869-63823888 None:intergenic 20.0%
!! AATATTCAGCAAATATATAC+AGG - chr5_4:63824167-63824186 Msa0863780:intron 20.0%
! GATTCAAACTTTATAAGTAG+AGG + chr5_4:63818513-63818532 None:intergenic 25.0%
!! TTTTTCATCTTTCTGTTTCA+TGG - chr5_4:63818710-63818729 Msa0863780:three_prime_UTR 25.0%
!! TTTTCATCTTTCTGTTTCAT+GGG - chr5_4:63818711-63818730 Msa0863780:three_prime_UTR 25.0%
!! TATAAACATCTTTGTTTGCA+TGG - chr5_4:63818965-63818984 Msa0863780:three_prime_UTR 25.0%
! GAAATGTTAATGATGATCTA+AGG - chr5_4:63819157-63819176 Msa0863780:intron 25.0%
!!! GGTTAGTTATTTTCTATTGT+TGG - chr5_4:63819178-63819197 Msa0863780:intron 25.0%
! ATTTAATGCATAGCAGAAAA+GGG + chr5_4:63819268-63819287 None:intergenic 25.0%
! AATTTAATGCATAGCAGAAA+AGG + chr5_4:63819269-63819288 None:intergenic 25.0%
! CAAAAATAACACAAATTCTG+AGG + chr5_4:63819485-63819504 None:intergenic 25.0%
!!! ATAATCTTTCTAGCATTTTC+AGG + chr5_4:63819641-63819660 None:intergenic 25.0%
! GAAAATGCTAGAAAGATTAT+TGG - chr5_4:63819641-63819660 Msa0863780:intron 25.0%
!! TATCTTCTTTTACAAGACAA+TGG - chr5_4:63819665-63819684 Msa0863780:intron 25.0%
!! CATTATTTGAAGATCAGTTT+TGG + chr5_4:63819756-63819775 None:intergenic 25.0%
! CAAAACTGATCTTCAAATAA+TGG - chr5_4:63819754-63819773 Msa0863780:CDS 25.0%
! ATCTGTCATTATTTCAGTAA+AGG - chr5_4:63820145-63820164 Msa0863780:intron 25.0%
! TAATGATAATACTAGCAATG+AGG - chr5_4:63820246-63820265 Msa0863780:intron 25.0%
! TATTTATCATAGTATGCCAT+CGG + chr5_4:63820370-63820389 None:intergenic 25.0%
!!! CTCTAGTTTGAAATTTGTTA+TGG - chr5_4:63820560-63820579 Msa0863780:intron 25.0%
!!! ATTTGTTATGGTTGATTTAC+AGG - chr5_4:63820572-63820591 Msa0863780:intron 25.0%
! AAACAAGTGTCAATAAGTAT+AGG + chr5_4:63820778-63820797 None:intergenic 25.0%
! ATGTGTACAACTTCAAAAAA+TGG + chr5_4:63821282-63821301 None:intergenic 25.0%
! TCGTCTAAAAAAATGTTTGA+AGG - chr5_4:63821441-63821460 Msa0863780:intron 25.0%
! CGTCTAAAAAAATGTTTGAA+GGG - chr5_4:63821442-63821461 Msa0863780:intron 25.0%
!! TTCATTGATTATTGACAAAG+GGG - chr5_4:63821519-63821538 Msa0863780:intron 25.0%
!! CATTTTTCATAGTCATGTTT+AGG - chr5_4:63821568-63821587 Msa0863780:intron 25.0%
!!! ATGTTTAGGTTTTATGATGT+TGG - chr5_4:63821582-63821601 Msa0863780:intron 25.0%
! TAAAACAGTGACCATAAATA+AGG + chr5_4:63821635-63821654 None:intergenic 25.0%
! ACTCCAAAATATAAGAAAAC+TGG - chr5_4:63821963-63821982 Msa0863780:intron 25.0%
! CTCCAAAATATAAGAAAACT+GGG - chr5_4:63821964-63821983 Msa0863780:intron 25.0%
!! TTCCCAGTTTTCTTATATTT+TGG + chr5_4:63821969-63821988 None:intergenic 25.0%
!!! GATATTTTTGACCGAAAATA+TGG - chr5_4:63822002-63822021 Msa0863780:intron 25.0%
!! AAGTAACCTTTCCATATTTT+CGG + chr5_4:63822016-63822035 None:intergenic 25.0%
! TGAGGTGTATAAAAATGATT+TGG - chr5_4:63822119-63822138 Msa0863780:CDS 25.0%
! GAGGTGTATAAAAATGATTT+GGG - chr5_4:63822120-63822139 Msa0863780:CDS 25.0%
! TATTTCGAGAACTATAGTAA+TGG - chr5_4:63822460-63822479 Msa0863780:intron 25.0%
! AGTGTACATTGTATGTAATA+AGG - chr5_4:63822536-63822555 Msa0863780:intron 25.0%
! GTGTACATTGTATGTAATAA+GGG - chr5_4:63822537-63822556 Msa0863780:intron 25.0%
! TGGTTTATTTAACATCACAA+AGG - chr5_4:63822704-63822723 Msa0863780:CDS 25.0%
! TTTATAGAATCTAATCACAG+AGG + chr5_4:63823044-63823063 None:intergenic 25.0%
! TTCAATTAGCATAACAATGA+AGG + chr5_4:63823386-63823405 None:intergenic 25.0%
!! GTACTAAAACAATTTTCCTT+TGG - chr5_4:63823553-63823572 Msa0863780:intron 25.0%
!! TATCAAATTTGCCTTTTGAT+AGG + chr5_4:63823605-63823624 None:intergenic 25.0%
! CAGAACAATAGATTCAAATT+CGG + chr5_4:63823701-63823720 None:intergenic 25.0%
!!! ATATGGTATTGGTTCAAAAT+TGG - chr5_4:63823723-63823742 Msa0863780:intron 25.0%
!!! TATGGTATTGGTTCAAAATT+GGG - chr5_4:63823724-63823743 Msa0863780:intron 25.0%
! TCCAATGGAAAATGATAAAT+AGG - chr5_4:63823998-63824017 Msa0863780:intron 25.0%
!! TCCTATTTATCATTTTCCAT+TGG + chr5_4:63824002-63824021 None:intergenic 25.0%
! TTAGTTTCAGAAACAAATAC+AGG - chr5_4:63824028-63824047 Msa0863780:intron 25.0%
!! ACATAATACAGTTCTTCTTT+TGG - chr5_4:63824106-63824125 Msa0863780:intron 25.0%
!!! TTTGTTGTTGAAGTTTTTAG+TGG - chr5_4:63824351-63824370 Msa0863780:five_prime_UTR 25.0%
AAAGAGAGAGAAACAGAAAA+AGG - chr5_4:63818635-63818654 Msa0863780:three_prime_UTR 30.0%
AAGAGAGAGAAACAGAAAAA+GGG - chr5_4:63818636-63818655 Msa0863780:three_prime_UTR 30.0%
TTTGCAACATGCATACAAAT+TGG + chr5_4:63818847-63818866 None:intergenic 30.0%
! CTTGAAATGAATGATAGTGT+TGG - chr5_4:63819017-63819036 Msa0863780:three_prime_UTR 30.0%
AGTGATGACAGAGAAAATTT+AGG - chr5_4:63819301-63819320 Msa0863780:intron 30.0%
ATGTTTCTTTCTGTGTCTTT+AGG - chr5_4:63819375-63819394 Msa0863780:intron 30.0%
CAATGCAAATCCTGAATTTA+CGG - chr5_4:63819916-63819935 Msa0863780:intron 30.0%
AATGCAAATCCTGAATTTAC+GGG - chr5_4:63819917-63819936 Msa0863780:intron 30.0%
TAATTCATTCCCGTAAATTC+AGG + chr5_4:63819929-63819948 None:intergenic 30.0%
ATTTACGGGAATGAATTACA+TGG - chr5_4:63819931-63819950 Msa0863780:intron 30.0%
GCTGTTAATGATTACAACAA+TGG - chr5_4:63820040-63820059 Msa0863780:intron 30.0%
AAATAATGACAGATCTTGAG+TGG + chr5_4:63820139-63820158 None:intergenic 30.0%
ATTTCAGTAAAGGTTACTGT+AGG - chr5_4:63820155-63820174 Msa0863780:intron 30.0%
! GGTAACTGTAGATATTTTCA+TGG - chr5_4:63820184-63820203 Msa0863780:intron 30.0%
ATAGTATTCGGCTAATTGAT+AGG - chr5_4:63820482-63820501 Msa0863780:intron 30.0%
TGCTCCAAAATACATTCAAA+AGG - chr5_4:63820630-63820649 Msa0863780:intron 30.0%
GCTCCAAAATACATTCAAAA+GGG - chr5_4:63820631-63820650 Msa0863780:intron 30.0%
! TCTCCCTTTTGAATGTATTT+TGG + chr5_4:63820637-63820656 None:intergenic 30.0%
AAAATCATTCTCACAGTTTC+AGG + chr5_4:63820934-63820953 None:intergenic 30.0%
! TGAAACTGTGAGAATGATTT+TGG - chr5_4:63820933-63820952 Msa0863780:intron 30.0%
TATGATGAATGCTTATTCCT+CGG - chr5_4:63821219-63821238 Msa0863780:intron 30.0%
! TTTGAAGTTGTACACATAGT+AGG - chr5_4:63821285-63821304 Msa0863780:intron 30.0%
AGTAGGCACATATCTATATA+TGG - chr5_4:63821302-63821321 Msa0863780:intron 30.0%
!!! ACTAAGTTTTAGCTCTCTTA+CGG + chr5_4:63821390-63821409 None:intergenic 30.0%
TAAATTATGGACAATGGAAC+AGG + chr5_4:63821768-63821787 None:intergenic 30.0%
CAAGCATAAATTATGGACAA+TGG + chr5_4:63821774-63821793 None:intergenic 30.0%
CTTGTAAAGTTATGGTATCT+TGG - chr5_4:63821790-63821809 Msa0863780:intron 30.0%
! CAGTTTTGCATTGAAAAGTA+AGG - chr5_4:63821845-63821864 Msa0863780:intron 30.0%
! TAACTTGGTCGTATTTCTAT+AGG + chr5_4:63821895-63821914 None:intergenic 30.0%
AAATACGACCAAGTTATAGA+AGG - chr5_4:63821899-63821918 Msa0863780:intron 30.0%
! TTTTGACCGAAAATATGGAA+AGG - chr5_4:63822007-63822026 Msa0863780:intron 30.0%
TATGGAAAGGTTACTTGTAT+AGG - chr5_4:63822020-63822039 Msa0863780:intron 30.0%
GTTACTTGTATAGGAGAAAT+AGG - chr5_4:63822029-63822048 Msa0863780:CDS 30.0%
GAATAAATGGAGAAAGGAAA+CGG + chr5_4:63822071-63822090 None:intergenic 30.0%
TTGAGAGAATAAATGGAGAA+AGG + chr5_4:63822077-63822096 None:intergenic 30.0%
CAAAAATACAGAGAAAACAG+AGG + chr5_4:63822283-63822302 None:intergenic 30.0%
AAATCAATGTAGTCAGGATT+GGG + chr5_4:63822410-63822429 None:intergenic 30.0%
!! AATCCTGACTACATTGATTT+GGG - chr5_4:63822410-63822429 Msa0863780:CDS 30.0%
! AACTATAGTAATGGAGCAAA+TGG - chr5_4:63822469-63822488 Msa0863780:intron 30.0%
CAAATGGAGATGATAGAAAA+TGG - chr5_4:63822485-63822504 Msa0863780:intron 30.0%
! AGAGGATCTTAACTTGAAAT+AGG - chr5_4:63822508-63822527 Msa0863780:intron 30.0%
! GAGGATCTTAACTTGAAATA+GGG - chr5_4:63822509-63822528 Msa0863780:intron 30.0%
ATTTATGTTTCCATGAGTAC+TGG - chr5_4:63822610-63822629 Msa0863780:CDS 30.0%
TTATACAAGTTTGAAGGGTA+TGG - chr5_4:63822676-63822695 Msa0863780:CDS 30.0%
TTAACTTCGGTATGTATTTC+AGG - chr5_4:63822895-63822914 Msa0863780:CDS 30.0%
! AACAAGCTTTTGAATTGCAA+AGG - chr5_4:63823212-63823231 Msa0863780:CDS 30.0%
CTACATTAAAACATACCATC+TGG + chr5_4:63823322-63823341 None:intergenic 30.0%
TTATTCAACGCATGATTTAG+AGG + chr5_4:63823451-63823470 None:intergenic 30.0%
TTTGTTCACAATTTCACTAG+AGG - chr5_4:63823645-63823664 Msa0863780:intron 30.0%
AATTTCACTAGAGGCTAAAA+TGG - chr5_4:63823654-63823673 Msa0863780:intron 30.0%
GAATCTATTGTTCTGCAATA+TGG - chr5_4:63823706-63823725 Msa0863780:intron 30.0%
ATTGTTCTGCAATATGGTAT+TGG - chr5_4:63823712-63823731 Msa0863780:intron 30.0%
! TTTTCCATTGGAAATGCAAA+TGG + chr5_4:63823990-63824009 None:intergenic 30.0%
AAATATATACAGGCTGAAGA+AGG - chr5_4:63824177-63824196 Msa0863780:intron 30.0%
AATATATACAGGCTGAAGAA+GGG - chr5_4:63824178-63824197 Msa0863780:intron 30.0%
TATAGAAATATGGCTGAAGA+AGG - chr5_4:63824257-63824276 Msa0863780:intron 30.0%
ACTATAGAAATATGGCTGAA+AGG - chr5_4:63824255-63824274 Msa0863780:intron 30.0%
TGGTTTATATGCCTCAAATA+TGG - chr5_4:63824523-63824542 Msa0863780:five_prime_UTR 30.0%
! ACTCTAAAAAGCCATATTTG+AGG + chr5_4:63824537-63824556 None:intergenic 30.0%
! CTTTGTTTGCATGGTGAAAA+AGG - chr5_4:63818974-63818993 Msa0863780:three_prime_UTR 35.0%
TGAACGGTTGATTATTGTTG+AGG - chr5_4:63819067-63819086 Msa0863780:CDS 35.0%
GAACGGTTGATTATTGTTGA+GGG - chr5_4:63819068-63819087 Msa0863780:CDS 35.0%
TTTCTCTGTCATCACTCAAA+AGG + chr5_4:63819297-63819316 None:intergenic 35.0%
TTTCTGTGTCTTTAGGTGAT+TGG - chr5_4:63819382-63819401 Msa0863780:intron 35.0%
TTCTGTGTCTTTAGGTGATT+GGG - chr5_4:63819383-63819402 Msa0863780:intron 35.0%
TGTTAGCAAGATAAGAGCTA+TGG - chr5_4:63819565-63819584 Msa0863780:CDS 35.0%
AATGGCTTAAACCTTGTTGA+GGG + chr5_4:63819823-63819842 None:intergenic 35.0%
AAATGGCTTAAACCTTGTTG+AGG + chr5_4:63819824-63819843 None:intergenic 35.0%
!! ACAAGGTTTAAGCCATTTTC+CGG - chr5_4:63819826-63819845 Msa0863780:CDS 35.0%
! TTCAAGTTCCATCTTCCTAT+TGG - chr5_4:63819876-63819895 Msa0863780:CDS 35.0%
TCAAGTTCCATCTTCCTATT+GGG - chr5_4:63819877-63819896 Msa0863780:CDS 35.0%
AAATTCAGGATTTGCATTGC+TGG + chr5_4:63819915-63819934 None:intergenic 35.0%
CATTTGGATCATGTGAATAC+CGG - chr5_4:63820004-63820023 Msa0863780:intron 35.0%
!! GATGTTTCTGCTGTCAATTT+TGG - chr5_4:63820067-63820086 Msa0863780:intron 35.0%
TTGGTGGAAAAGCTACAAAA+AGG - chr5_4:63820086-63820105 Msa0863780:CDS 35.0%
ATATAAGAGAAACTGTCGTG+AGG + chr5_4:63820217-63820236 None:intergenic 35.0%
GACAGTTTCTCTTATATGCA+TGG - chr5_4:63820220-63820239 Msa0863780:intron 35.0%
TAATACTAGCAATGAGGATC+CGG - chr5_4:63820252-63820271 Msa0863780:intron 35.0%
!!! TTTTTTCTTTGCAGCGCATT+TGG - chr5_4:63820841-63820860 Msa0863780:intron 35.0%
! TTTTTCTTTGCAGCGCATTT+GGG - chr5_4:63820842-63820861 Msa0863780:intron 35.0%
TTGGGTATGTTGAAGATGTT+AGG - chr5_4:63820860-63820879 Msa0863780:intron 35.0%
! TGTGAGAATGATTTTGGACA+AGG - chr5_4:63820939-63820958 Msa0863780:intron 35.0%
! GTGAGAATGATTTTGGACAA+GGG - chr5_4:63820940-63820959 Msa0863780:intron 35.0%
AGAAGACAAAGGTTGTTGAA+AGG - chr5_4:63821013-63821032 Msa0863780:intron 35.0%
TTCAAAAAATGGAGTGCAAG+AGG + chr5_4:63821271-63821290 None:intergenic 35.0%
AGACAGTTCCTTCTATAACT+TGG + chr5_4:63821910-63821929 None:intergenic 35.0%
AACTGGGAAGTTAGAATAAG+AGG - chr5_4:63821980-63821999 Msa0863780:intron 35.0%
ATAGGAGAAATAGGTGAGTT+AGG - chr5_4:63822038-63822057 Msa0863780:CDS 35.0%
GCAAAAAACAGAGCAAACAT+AGG + chr5_4:63822253-63822272 None:intergenic 35.0%
AGAGTTGAGAGAAAAAACAG+AGG + chr5_4:63822313-63822332 None:intergenic 35.0%
CAAATCAATGTAGTCAGGAT+TGG + chr5_4:63822411-63822430 None:intergenic 35.0%
! CAATCCTGACTACATTGATT+TGG - chr5_4:63822409-63822428 Msa0863780:CDS 35.0%
ATAACTGTATCCAGTACTCA+TGG + chr5_4:63822623-63822642 None:intergenic 35.0%
!! TGAGTACTGGATACAGTTAT+TGG - chr5_4:63822623-63822642 Msa0863780:CDS 35.0%
TCGATATTTGCAAAGTGATG+TGG + chr5_4:63822957-63822976 None:intergenic 35.0%
TATGCAGTTCCAAGAAGTTA+TGG - chr5_4:63823148-63823167 Msa0863780:CDS 35.0%
ATGCAGTTCCAAGAAGTTAT+GGG - chr5_4:63823149-63823168 Msa0863780:CDS 35.0%
ACTGTCTACTTAGAGATCTA+TGG + chr5_4:63823177-63823196 None:intergenic 35.0%
ATCTCTAAGTAGACAGTTGA+TGG - chr5_4:63823180-63823199 Msa0863780:CDS 35.0%
AAATGAGGTGAAATGGGAAA+AGG + chr5_4:63823271-63823290 None:intergenic 35.0%
! TTTCCCATTTCACCTCATTT+TGG - chr5_4:63823271-63823290 Msa0863780:CDS 35.0%
! TTCCCATTTCACCTCATTTT+GGG - chr5_4:63823272-63823291 Msa0863780:CDS 35.0%
AACCCAAAATGAGGTGAAAT+GGG + chr5_4:63823277-63823296 None:intergenic 35.0%
AAACCCAAAATGAGGTGAAA+TGG + chr5_4:63823278-63823297 None:intergenic 35.0%
TGCAGATCATTTCAATTTCC+AGG - chr5_4:63823417-63823436 Msa0863780:CDS 35.0%
! TTGCCTTTTGATAGGAAGAA+CGG + chr5_4:63823597-63823616 None:intergenic 35.0%
TCACTGAAATTAGTTGCAGA+TGG + chr5_4:63823802-63823821 None:intergenic 35.0%
CTGCAACTAATTTCAGTGAA+TGG - chr5_4:63823803-63823822 Msa0863780:intron 35.0%
CAACTAATTTCAGTGAATGG+TGG - chr5_4:63823806-63823825 Msa0863780:intron 35.0%
! GTAATTTTATGCAGCAACGA+AGG - chr5_4:63823945-63823964 Msa0863780:intron 35.0%
!! AAGAAAGAGTTTGTTGCCTT+TGG + chr5_4:63824081-63824100 None:intergenic 35.0%
CACAATTTACTCAACTAGCT+TGG - chr5_4:63824131-63824150 Msa0863780:intron 35.0%
! ACGAATTTCCTTTTTGCAAC+TGG - chr5_4:63824208-63824227 Msa0863780:intron 35.0%
AGAAATATGGCTGAAAGGTT+TGG - chr5_4:63824303-63824322 Msa0863780:intron 35.0%
!! TTTGGTTTCTAGAACATCCT+TGG - chr5_4:63824321-63824340 Msa0863780:intron 35.0%
!! TTGGTTTCTAGAACATCCTT+GGG - chr5_4:63824322-63824341 Msa0863780:intron 35.0%
CAACAACAAAAAAACTCCCA+AGG + chr5_4:63824341-63824360 None:intergenic 35.0%
AACCTTTCAGAATGTGGTTA+TGG - chr5_4:63824403-63824422 Msa0863780:five_prime_UTR 35.0%
ATCCATAACCACATTCTGAA+AGG + chr5_4:63824408-63824427 None:intergenic 35.0%
TAGAAAGAAAGCTGCTCATA+GGG + chr5_4:63824448-63824467 None:intergenic 35.0%
GAGAGAAACAGAAAAAGGGT+TGG - chr5_4:63818640-63818659 Msa0863780:three_prime_UTR 40.0%
CAGAACAATGCTTGAAGAAC+AGG + chr5_4:63818687-63818706 None:intergenic 40.0%
TCTGTGTCTTTAGGTGATTG+GGG - chr5_4:63819384-63819403 Msa0863780:intron 40.0%
AGACAATGGCGAACAAGAAA+TGG - chr5_4:63819679-63819698 Msa0863780:intron 40.0%
GATGGAACTTGAAAGTTCAG+CGG + chr5_4:63819869-63819888 None:intergenic 40.0%
TTTGCATTGCTGGTAGATTG+TGG + chr5_4:63819905-63819924 None:intergenic 40.0%
ACAAACGCAATTGCTGAGTT+TGG - chr5_4:63819976-63819995 Msa0863780:intron 40.0%
GCTGAGTTTGGAGAATCATT+TGG - chr5_4:63819988-63820007 Msa0863780:intron 40.0%
! GTTTCTGCTGTCAATTTTGG+TGG - chr5_4:63820070-63820089 Msa0863780:CDS 40.0%
AGTAAAGGTTACTGTAGGCA+TGG - chr5_4:63820160-63820179 Msa0863780:intron 40.0%
!!! GAGCTTTTAAAGCAGAGAAG+AGG - chr5_4:63820319-63820338 Msa0863780:intron 40.0%
!! AAAAAGGTACTGCAAGCACA+TGG - chr5_4:63820391-63820410 Msa0863780:intron 40.0%
! AACATTCTTTTCTGCTGGCA+TGG + chr5_4:63820889-63820908 None:intergenic 40.0%
TGCCAGCAGAAAAGAATGTT+TGG - chr5_4:63820889-63820908 Msa0863780:intron 40.0%
GCCAGCAGAAAAGAATGTTT+GGG - chr5_4:63820890-63820909 Msa0863780:intron 40.0%
! ACCCAAACATTCTTTTCTGC+TGG + chr5_4:63820894-63820913 None:intergenic 40.0%
GGAAATCCTCATTATGTTCG+TGG - chr5_4:63820961-63820980 Msa0863780:intron 40.0%
TGTGCTTGTGAAACCTTACA+GGG - chr5_4:63820990-63821009 Msa0863780:intron 40.0%
!! ATTCCTCGGTGTTTATTCTC+TGG - chr5_4:63821233-63821252 Msa0863780:intron 40.0%
TATCTATATATGGCACGCGT+TGG - chr5_4:63821312-63821331 Msa0863780:intron 40.0%
ACAGAGGCAACTTCAAGAAT+GGG + chr5_4:63821471-63821490 None:intergenic 40.0%
AACAGAGGCAACTTCAAGAA+TGG + chr5_4:63821472-63821491 None:intergenic 40.0%
! CTCTGTTTCTCGTGATGAAT+CGG - chr5_4:63821485-63821504 Msa0863780:intron 40.0%
GGTACGAGATACATGTTCTA+TGG + chr5_4:63821741-63821760 None:intergenic 40.0%
AGCAAAAACGAACCTGAGTA+AGG + chr5_4:63822223-63822242 None:intergenic 40.0%
! AACACGATAGTAGGATTGGT+AGG + chr5_4:63822344-63822363 None:intergenic 40.0%
ACGTAACACGATAGTAGGAT+TGG + chr5_4:63822348-63822367 None:intergenic 40.0%
ATTGGGATCCTAAGTAGGAT+CGG + chr5_4:63822393-63822412 None:intergenic 40.0%
GGAGATGATAGAAAATGGAG+AGG - chr5_4:63822490-63822509 Msa0863780:intron 40.0%
ACTTCGGTATGTATTTCAGG+AGG - chr5_4:63822898-63822917 Msa0863780:CDS 40.0%
AATCACAGAGGAAACCAGTA+AGG + chr5_4:63823077-63823096 None:intergenic 40.0%
!! TTACTGGTTTCCTCTGTGAT+TGG - chr5_4:63823076-63823095 Msa0863780:CDS 40.0%
ATTGAGAAAGCCAATCACAG+AGG + chr5_4:63823089-63823108 None:intergenic 40.0%
CTATGGTTCCCATAACTTCT+TGG + chr5_4:63823160-63823179 None:intergenic 40.0%
!!! ACCTCATTTTGGGTTTCCTA+TGG - chr5_4:63823282-63823301 Msa0863780:CDS 40.0%
TCCATAGGAAACCCAAAATG+AGG + chr5_4:63823286-63823305 None:intergenic 40.0%
TCATTTCAATTTCCAGGCTG+CGG - chr5_4:63823423-63823442 Msa0863780:CDS 40.0%
!! AATACTGACACTGATTCCTC+TGG - chr5_4:63823481-63823500 Msa0863780:intron 40.0%
! CAATTTTCCTTTGGTGAGCT+AGG - chr5_4:63823562-63823581 Msa0863780:intron 40.0%
! GGCTGTATAGTGCTGTTAAA+TGG - chr5_4:63823675-63823694 Msa0863780:intron 40.0%
CTGAAATTAGTTGCAGATGG+CGG + chr5_4:63823799-63823818 None:intergenic 40.0%
TAGCAATCGTACTGCATGTA+AGG + chr5_4:63823844-63823863 None:intergenic 40.0%
!! TGGAAATGCAAATGGACTGT+CGG + chr5_4:63823982-63824001 None:intergenic 40.0%
CAGTCCATTTGCATTTCCAA+TGG - chr5_4:63823983-63824002 Msa0863780:intron 40.0%
GAAGTACAGAGTTAGAACAG+TGG - chr5_4:63824052-63824071 Msa0863780:intron 40.0%
! TTCCTTTTTGCAACTGGAAC+TGG - chr5_4:63824214-63824233 Msa0863780:intron 40.0%
TTGGACAACCTTTCAGAATG+TGG - chr5_4:63824397-63824416 Msa0863780:five_prime_UTR 40.0%
CTAGAAAGAAAGCTGCTCAT+AGG + chr5_4:63824449-63824468 None:intergenic 40.0%
! ACTCACTCAGTGCGTTTTGT+TGG - chr5_4:63818610-63818629 Msa0863780:three_prime_UTR 45.0%
CTGTGTCTTTAGGTGATTGG+GGG - chr5_4:63819385-63819404 Msa0863780:intron 45.0%
ATGGCGAACAAGAAATGGCT+AGG - chr5_4:63819684-63819703 Msa0863780:intron 45.0%
CGAACAAGAAATGGCTAGGT+TGG - chr5_4:63819688-63819707 Msa0863780:intron 45.0%
TCTTGTCCTGACCACATCAT+CGG - chr5_4:63819713-63819732 Msa0863780:intron 45.0%
CATCGGTGAAGTCGTCTTTA+AGG - chr5_4:63819730-63819749 Msa0863780:intron 45.0%
!! TTGACATTAGGTGGCGGAAT+TGG + chr5_4:63819800-63819819 None:intergenic 45.0%
TGTTGAGGGTTGACATTAGG+TGG + chr5_4:63819809-63819828 None:intergenic 45.0%
CCTTGTTGAGGGTTGACATT+AGG + chr5_4:63819812-63819831 None:intergenic 45.0%
CCTAATGTCAACCCTCAACA+AGG - chr5_4:63819809-63819828 Msa0863780:CDS 45.0%
ACGGAGATAATGCCGGAAAA+TGG + chr5_4:63819841-63819860 None:intergenic 45.0%
TGAAAGTTCAGCGGTGAAGA+CGG + chr5_4:63819860-63819879 None:intergenic 45.0%
TGTGGATCCCAATAGGAAGA+TGG + chr5_4:63819887-63819906 None:intergenic 45.0%
GGTAGATTGTGGATCCCAAT+AGG + chr5_4:63819894-63819913 None:intergenic 45.0%
AAAGGTTACTGTAGGCATGG+AGG - chr5_4:63820163-63820182 Msa0863780:intron 45.0%
TCGCGCGACTCAATAGTATT+CGG - chr5_4:63820470-63820489 Msa0863780:intron 45.0%
! TGGTTGATTTACAGGCCTCA+CGG - chr5_4:63820580-63820599 Msa0863780:intron 45.0%
TGACAGCACTTTCACTGAAG+AGG - chr5_4:63820708-63820727 Msa0863780:intron 45.0%
GTGTGCTTGTGAAACCTTAC+AGG - chr5_4:63820989-63821008 Msa0863780:intron 45.0%
ACCTTACAGGGAGAAGACAA+AGG - chr5_4:63821002-63821021 Msa0863780:intron 45.0%
ACCTTTGTCTTCTCCCTGTA+AGG + chr5_4:63821006-63821025 None:intergenic 45.0%
GAACCAGAGAATAAACACCG+AGG + chr5_4:63821239-63821258 None:intergenic 45.0%
CGATTCATCACGAGAAACAG+AGG + chr5_4:63821487-63821506 None:intergenic 45.0%
TATGGACAATGGAACAGGTG+CGG + chr5_4:63821763-63821782 None:intergenic 45.0%
AATGGAGAAAGGAAACGGAG+AGG + chr5_4:63822066-63822085 None:intergenic 45.0%
! TGATTTGGGCCATTGTAGTC+AGG - chr5_4:63822134-63822153 Msa0863780:CDS 45.0%
GCCATTGTAGTCAGGATTGA+GGG - chr5_4:63822142-63822161 Msa0863780:CDS 45.0%
GAGGAACGTAACACGATAGT+AGG + chr5_4:63822353-63822372 None:intergenic 45.0%
TCAGGATTGGGATCCTAAGT+AGG + chr5_4:63822398-63822417 None:intergenic 45.0%
GAGCCCAAATCAATGTAGTC+AGG + chr5_4:63822416-63822435 None:intergenic 45.0%
! GTTTGAAGGGTATGGCATCT+TGG - chr5_4:63822684-63822703 Msa0863780:CDS 45.0%
!! CAGGAGGTACCATGATAGAA+TGG - chr5_4:63822914-63822933 Msa0863780:CDS 45.0%
! CAGAGTGCTCCATTCTATCA+TGG + chr5_4:63822926-63822945 None:intergenic 45.0%
TGAAATGGGAAAAGGTCGTC+GGG + chr5_4:63823263-63823282 None:intergenic 45.0%
GTGAAATGGGAAAAGGTCGT+CGG + chr5_4:63823264-63823283 None:intergenic 45.0%
TGTATACCTATTCCCTCCAG+AGG + chr5_4:63823500-63823519 None:intergenic 45.0%
CTATAAGCCTAGCTCACCAA+AGG + chr5_4:63823572-63823591 None:intergenic 45.0%
GCACCGTTCTTCCTATCAAA+AGG - chr5_4:63823591-63823610 Msa0863780:intron 45.0%
!! GAAATGCAAATGGACTGTCG+GGG + chr5_4:63823980-63823999 None:intergenic 45.0%
!! GGAAATGCAAATGGACTGTC+GGG + chr5_4:63823981-63824000 None:intergenic 45.0%
GTACAGAGTTAGAACAGTGG+AGG - chr5_4:63824055-63824074 Msa0863780:intron 45.0%
CACCAGTTCCAGTTGCAAAA+AGG + chr5_4:63824219-63824238 None:intergenic 45.0%
! CTTTTTGCAACTGGAACTGG+TGG - chr5_4:63824217-63824236 Msa0863780:intron 45.0%
ACTTCACCGATGATGTGGTC+AGG + chr5_4:63819722-63819741 None:intergenic 50.0%
AGACGACTTCACCGATGATG+TGG + chr5_4:63819727-63819746 None:intergenic 50.0%
TGAGGGTTGACATTAGGTGG+CGG + chr5_4:63819806-63819825 None:intergenic 50.0%
GGTGAAGACGGAGATAATGC+CGG + chr5_4:63819848-63819867 None:intergenic 50.0%
CATGTGAATACCGGAACTCG+AGG - chr5_4:63820013-63820032 Msa0863780:intron 50.0%
AACAGCAAGACCTCGAGTTC+CGG + chr5_4:63820026-63820045 None:intergenic 50.0%
AGGATCCGGTGATTTCACCA+GGG - chr5_4:63820266-63820285 Msa0863780:intron 50.0%
AGTGACCCTGGTGAAATCAC+CGG + chr5_4:63820274-63820293 None:intergenic 50.0%
TCTATCTGAGCTAGTGACCC+TGG + chr5_4:63820286-63820305 None:intergenic 50.0%
GGCAGCGAAGCAATTGACAT+TGG + chr5_4:63820349-63820368 None:intergenic 50.0%
TTAACTGAGAGCCAGCGACA+TGG - chr5_4:63820418-63820437 Msa0863780:intron 50.0%
!! TCAGTGAAAGTGCTGTCAGC+TGG + chr5_4:63820706-63820725 None:intergenic 50.0%
CGAGAGCCACGAACATAATG+AGG + chr5_4:63820970-63820989 None:intergenic 50.0%
ATGGACAATGGAACAGGTGC+GGG + chr5_4:63821762-63821781 None:intergenic 50.0%
GGCCATTGTAGTCAGGATTG+AGG - chr5_4:63822141-63822160 Msa0863780:CDS 50.0%
GCCCTCAATCCTGACTACAA+TGG + chr5_4:63822146-63822165 None:intergenic 50.0%
TTGTAGTCAGGATTGAGGGC+TGG - chr5_4:63822146-63822165 Msa0863780:CDS 50.0%
!! AGGATTGAGGGCTGGTTTGT+AGG - chr5_4:63822154-63822173 Msa0863780:CDS 50.0%
ACCTGAGTAAGGTCGAAGCA+CGG + chr5_4:63822212-63822231 None:intergenic 50.0%
GGAACTCTCAACGCATCCAT+AGG + chr5_4:63823301-63823320 None:intergenic 50.0%
GATGCGTTGAGAGTTCCAGA+TGG - chr5_4:63823304-63823323 Msa0863780:CDS 50.0%
!! ACTGACACTGATTCCTCTGG+AGG - chr5_4:63823484-63823503 Msa0863780:intron 50.0%
!! CTGACACTGATTCCTCTGGA+GGG - chr5_4:63823485-63823504 Msa0863780:intron 50.0%
! CTGATTCCTCTGGAGGGAAT+AGG - chr5_4:63823491-63823510 Msa0863780:intron 50.0%
GTTAGAACAGTGGAGGCCAA+AGG - chr5_4:63824062-63824081 Msa0863780:intron 50.0%
!! AGGTGGCGGAATTGGCATCA+TGG + chr5_4:63819792-63819811 None:intergenic 55.0%
GAGGATCCGGTGATTTCACC+AGG - chr5_4:63820265-63820284 Msa0863780:intron 55.0%
GTCAATTGCTTCGCTGCCGA+TGG - chr5_4:63820351-63820370 Msa0863780:intron 55.0%
AGCCAGCGACATGGTAAGTC+TGG - chr5_4:63820427-63820446 Msa0863780:intron 55.0%
AGCCAGACTTACCATGTCGC+TGG + chr5_4:63820432-63820451 None:intergenic 55.0%
ACCACTGCATGTTGTCCGTG+AGG + chr5_4:63820598-63820617 None:intergenic 55.0%
CGGACAACATGCAGTGGTTC+TGG - chr5_4:63820600-63820619 Msa0863780:intron 55.0%
TCGTACGATCCTACGTCCCA+TGG - chr5_4:63822178-63822197 Msa0863780:CDS 55.0%
! AAGCACGGTTGAGGTGCCAT+GGG + chr5_4:63822197-63822216 None:intergenic 55.0%
GTAAGGTCGAAGCACGGTTG+AGG + chr5_4:63822206-63822225 None:intergenic 55.0%
ACCGTGCTTCGACCTTACTC+AGG - chr5_4:63822208-63822227 Msa0863780:intron 55.0%
GGTCAGCTCGTGAAAACACG+AGG + chr5_4:63822372-63822391 None:intergenic 55.0%
CGAGCTGACCGATCCTACTT+AGG - chr5_4:63822382-63822401 Msa0863780:CDS 55.0%
GATTTAGAGGTTCCGCAGCC+TGG + chr5_4:63823438-63823457 None:intergenic 55.0%
GCCTCACGGACAACATGCAG+TGG - chr5_4:63820594-63820613 Msa0863780:intron 60.0%
! GTTGAGGTGCCATGGGACGT+AGG + chr5_4:63822190-63822209 None:intergenic 60.0%
! GAAGCACGGTTGAGGTGCCA+TGG + chr5_4:63822198-63822217 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 63818480 63824583 63818480 ID=Msa0863780;Name=Msa0863780
chr5_4 mRNA 63818480 63824583 63818480 ID=Msa0863780-mRNA-1;Parent=Msa0863780;Name=Msa0863780-mRNA-1;_AED=0.07;_eAED=0.07;_QI=272|1|1|1|0.75|0.66|9|534|551
chr5_4 exon 63818480 63818507 63818480 ID=Msa0863780-mRNA-1:exon:20096;Parent=Msa0863780-mRNA-1
chr5_4 exon 63818538 63819104 63818538 ID=Msa0863780-mRNA-1:exon:20095;Parent=Msa0863780-mRNA-1
chr5_4 exon 63819551 63819641 63819551 ID=Msa0863780-mRNA-1:exon:20094;Parent=Msa0863780-mRNA-1
chr5_4 exon 63819738 63819908 63819738 ID=Msa0863780-mRNA-1:exon:20093;Parent=Msa0863780-mRNA-1
chr5_4 exon 63820070 63820146 63820070 ID=Msa0863780-mRNA-1:exon:20092;Parent=Msa0863780-mRNA-1
chr5_4 exon 63822029 63822208 63822029 ID=Msa0863780-mRNA-1:exon:20091;Parent=Msa0863780-mRNA-1
chr5_4 exon 63822314 63822469 63822314 ID=Msa0863780-mRNA-1:exon:20090;Parent=Msa0863780-mRNA-1
chr5_4 exon 63822560 63823498 63822560 ID=Msa0863780-mRNA-1:exon:20089;Parent=Msa0863780-mRNA-1
chr5_4 exon 63824331 63824583 63824331 ID=Msa0863780-mRNA-1:exon:20088;Parent=Msa0863780-mRNA-1
chr5_4 five_prime_UTR 63824331 63824583 63824331 ID=Msa0863780-mRNA-1:five_prime_utr;Parent=Msa0863780-mRNA-1
chr5_4 five_prime_UTR 63823480 63823498 63823480 ID=Msa0863780-mRNA-1:five_prime_utr;Parent=Msa0863780-mRNA-1
chr5_4 CDS 63822560 63823479 63822560 ID=Msa0863780-mRNA-1:cds;Parent=Msa0863780-mRNA-1
chr5_4 CDS 63822314 63822469 63822314 ID=Msa0863780-mRNA-1:cds;Parent=Msa0863780-mRNA-1
chr5_4 CDS 63822029 63822208 63822029 ID=Msa0863780-mRNA-1:cds;Parent=Msa0863780-mRNA-1
chr5_4 CDS 63820070 63820146 63820070 ID=Msa0863780-mRNA-1:cds;Parent=Msa0863780-mRNA-1
chr5_4 CDS 63819738 63819908 63819738 ID=Msa0863780-mRNA-1:cds;Parent=Msa0863780-mRNA-1
chr5_4 CDS 63819551 63819641 63819551 ID=Msa0863780-mRNA-1:cds;Parent=Msa0863780-mRNA-1
chr5_4 CDS 63819044 63819104 63819044 ID=Msa0863780-mRNA-1:cds;Parent=Msa0863780-mRNA-1
chr5_4 three_prime_UTR 63818538 63819043 63818538 ID=Msa0863780-mRNA-1:three_prime_utr;Parent=Msa0863780-mRNA-1
chr5_4 three_prime_UTR 63818480 63818507 63818480 ID=Msa0863780-mRNA-1:three_prime_utr;Parent=Msa0863780-mRNA-1
Gene Sequence

>Msa0863780

ATGGATATATCAGAGTACACAAGAATTGTGTTTGATAAAATTCAGAAATTTGAGCCTGAAAATGCTAGAAAGATTATTGGCTATCTTCTTTTACAAGACAATGGCGAACAAGAAATGGCTAGGTTGGCTTCTTGTCCTGACCACATCATCGGTGAAGTCGTCTTTAAGGCCAAAACTGATCTTCAAATAATGGCTGTTAATTCAACCATGATGCCAATTCCGCCACCTAATGTCAACCCTCAACAAGGTTTAAGCCATTTTCCGGCATTATCTCCGTCTTCACCGCTGAACTTTCAAGTTCCATCTTCCTATTGGGATCCACAATCTACCAGCAATGCAAATCCTGAATTTACGGGAATGAATTACATGGATTCTATTGTAGAACTTCAAAAACAAACGCAATTGCTGAGTTTGGAGAATCATTTGGATCATGTGAATACCGGAACTCGAGGTCTTGCTGTTAATGATTACAACAATGGCTTAGATGTTTCTGCTGTCAATTTTGGTGGAAAAGCTACAAAAAGGTTTTCAAATTCAAACATGTCTGAATTTCCACTCAAGATCTGTCATTATTTCAGTAAAGGTTACTGTAGGCATGGAGGTAACTGTAGATATTTTCATGGTCAAGTTCCTCACGACAGTTTCTCTTATATGCATGGAAATAATGATAATACTAGCAATGAGGATCCGGTGATTTCACCAGGGTCACTAGCTCAGATAGAGTCTGAAATTATTGAGCTTTTAAAGCAGAGAAGAGGAAATCCAATGTCAATTGCTTCGCTGCCGATGGCATACTATGATAAATATAAAAAGGTACTGCAAGCACATGGTTATTTAACTGAGAGCCAGCGACATGGTAAGTCTGGCTATAGTTTGACAAAGCTTCTCGCGCGACTCAATAGTATTCGGCTAATTGATAGGCCTCACGGACAACATGCAGTGGTTCTGGCTGAAGATGCTCCAAAATACATTCAAAAGGGAGATTCTGTTCAAAATATCAGTGCATCGCGACAGATATATCTGACTTTTCCAGCTGACAGCACTTTCACTGAAGAGGATGTCGCAGAATACTTCAACGCATTTGGGTATGTTGAAGATGTTAGGATTCCATGCCAGCAGAAAAGAATGTTTGGGTTTGTAACATTTGCTGATCCTGAAACTGTGAGAATGATTTTGGACAAGGGAAATCCTCATTATGTTCGTGGCTCTCGTGTGCTTGTGAAACCTTACAGGGAGAAGACAAAGGTTGTTGAAAGGAGGTACCATGATAGAATGGAGCACTCTGCTTGCTGTCCACATCACTTTGCAAATATCGACTCTGAACTTGACTCAATTCCAAGAAGTTATGGGAACCATAGATCTCTAAGTAGACAGTTGATGGAAGAGCATGAACAAGCTTTTGAATTGCAAAGGAGACGTCTTGCGCAGCTGCAATTTACCCGACGACCTTTTCCCATTTCACCTCATTTTGGGTTTCCTATGGATGCGTTGAGAGTTCCAGATGATCATTTCAATTTCCAGGCTGCGGAACCTCTAAATCATGCGTTGAATAACAACACCAAGAATACTGACACTGATTCCTCTGGAGGGAATAGCAACGAAGGACTCAATCTCCCCGACAGTCCATTTGCATTTCCAATGGAAAATGATAAATAG

Protein sequence

>Msa0863780

MDISEYTRIVFDKIQKFEPENARKIIGYLLLQDNGEQEMARLASCPDHIIGEVVFKAKTDLQIMAVNSTMMPIPPPNVNPQQGLSHFPALSPSSPLNFQVPSSYWDPQSTSNANPEFTGMNYMDSIVELQKQTQLLSLENHLDHVNTGTRGLAVNDYNNGLDVSAVNFGGKATKRFSNSNMSEFPLKICHYFSKGYCRHGGNCRYFHGQVPHDSFSYMHGNNDNTSNEDPVISPGSLAQIESEIIELLKQRRGNPMSIASLPMAYYDKYKKVLQAHGYLTESQRHGKSGYSLTKLLARLNSIRLIDRPHGQHAVVLAEDAPKYIQKGDSVQNISASRQIYLTFPADSTFTEEDVAEYFNAFGYVEDVRIPCQQKRMFGFVTFADPETVRMILDKGNPHYVRGSRVLVKPYREKTKVVERRYHDRMEHSACCPHHFANIDSELDSIPRSYGNHRSLSRQLMEEHEQAFELQRRRLAQLQFTRRPFPISPHFGFPMDALRVPDDHFNFQAAEPLNHALNNNTKNTDTDSSGGNSNEGLNLPDSPFAFPMENDK*