Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100840 | XP_003588683.2 | 95.745 | 423 | 17 | 1 | 1 | 423 | 1 | 422 | 0.0 | 836 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100840 | sp|Q147G5|CCA22_ARATH | 51.878 | 426 | 172 | 6 | 14 | 423 | 26 | 434 | 2.26e-137 | 403 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100840 | G7I6A9 | 95.745 | 423 | 17 | 1 | 1 | 423 | 1 | 422 | 0.0 | 836 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000180 | Msa0100840 | 0.818210 | 2.207728e-52 | -8.615850e-47 |
| Msa0003370 | Msa0100840 | 0.802782 | 4.765158e-49 | -8.615850e-47 |
| Msa0007170 | Msa0100840 | 0.818867 | 1.566938e-52 | -8.615850e-47 |
| Msa0022230 | Msa0100840 | 0.809834 | 1.555678e-50 | -8.615850e-47 |
| Msa0028450 | Msa0100840 | 0.819295 | 1.251926e-52 | -8.615850e-47 |
| Msa0053680 | Msa0100840 | 0.809928 | 1.484543e-50 | -8.615850e-47 |
| Msa0055540 | Msa0100840 | 0.830853 | 2.324565e-55 | -8.615850e-47 |
| Msa0063850 | Msa0100840 | 0.809437 | 1.893335e-50 | -8.615850e-47 |
| Msa0072910 | Msa0100840 | 0.819012 | 1.452184e-52 | -8.615850e-47 |
| Msa0089410 | Msa0100840 | 0.836338 | 9.920083e-57 | -8.615850e-47 |
| Msa0099300 | Msa0100840 | 0.820590 | 6.330511e-53 | -8.615850e-47 |
| Msa0100840 | Msa0121080 | 0.808430 | 3.108563e-50 | -8.615850e-47 |
| Msa0100840 | Msa0124070 | 0.809456 | 1.875484e-50 | -8.615850e-47 |
| Msa0100840 | Msa0136520 | 0.836634 | 8.340077e-57 | -8.615850e-47 |
| Msa0100840 | Msa0138340 | 0.808888 | 2.482184e-50 | -8.615850e-47 |
| Msa0100840 | Msa0146570 | 0.809565 | 1.777035e-50 | -8.615850e-47 |
| Msa0100840 | Msa0147960 | 0.811527 | 6.697741e-51 | -8.615850e-47 |
| Msa0100840 | Msa0194370 | 0.824467 | 7.944369e-54 | -8.615850e-47 |
| Msa0100840 | Msa0201910 | 0.825918 | 3.607598e-54 | -8.615850e-47 |
| Msa0100840 | Msa0206600 | 0.806344 | 8.611951e-50 | -8.615850e-47 |
| Msa0100840 | Msa0207220 | 0.800856 | 1.184114e-48 | -8.615850e-47 |
| Msa0100840 | Msa0224980 | 0.809361 | 1.965525e-50 | -8.615850e-47 |
| Msa0100840 | Msa0225030 | 0.813197 | 2.892062e-51 | -8.615850e-47 |
| Msa0100840 | Msa0236100 | 0.823757 | 1.166611e-53 | -8.615850e-47 |
| Msa0100840 | Msa0244370 | 0.808410 | 3.139410e-50 | -8.615850e-47 |
| Msa0100840 | Msa0251140 | 0.802343 | 5.867582e-49 | -8.615850e-47 |
| Msa0100840 | Msa0258380 | 0.806497 | 7.991924e-50 | -8.615850e-47 |
| Msa0100840 | Msa0258410 | 0.812936 | 3.298947e-51 | -8.615850e-47 |
| Msa0100840 | Msa0263470 | 0.811251 | 7.688065e-51 | -8.615850e-47 |
| Msa0100840 | Msa0274000 | 0.800411 | 1.459353e-48 | -8.615850e-47 |
| Msa0100840 | Msa0274890 | 0.805440 | 1.333807e-49 | -8.615850e-47 |
| Msa0100840 | Msa0281310 | 0.806010 | 1.012214e-49 | -8.615850e-47 |
| Msa0100840 | Msa0282880 | 0.818771 | 1.646793e-52 | -8.615850e-47 |
| Msa0100840 | Msa0288270 | 0.806965 | 6.365873e-50 | -8.615850e-47 |
| Msa0100840 | Msa0288280 | 0.805765 | 1.139816e-49 | -8.615850e-47 |
| Msa0100840 | Msa0291920 | -0.817574 | 3.072702e-52 | -8.615850e-47 |
| Msa0100840 | Msa0303950 | 0.813557 | 2.410176e-51 | -8.615850e-47 |
| Msa0100840 | Msa0305810 | 0.806891 | 6.598388e-50 | -8.615850e-47 |
| Msa0100840 | Msa0314620 | 0.805306 | 1.422354e-49 | -8.615850e-47 |
| Msa0100840 | Msa0321180 | 0.802006 | 6.884366e-49 | -8.615850e-47 |
| Msa0100840 | Msa0321200 | 0.807213 | 5.640524e-50 | -8.615850e-47 |
| Msa0100840 | Msa0323790 | 0.808516 | 2.980965e-50 | -8.615850e-47 |
| Msa0100840 | Msa0327900 | 0.800911 | 1.153966e-48 | -8.615850e-47 |
| Msa0100840 | Msa0338610 | 0.807618 | 4.628230e-50 | -8.615850e-47 |
| Msa0100840 | Msa0383110 | 0.803113 | 4.069842e-49 | -8.615850e-47 |
| Msa0100840 | Msa0389710 | -0.800147 | 1.652008e-48 | -8.615850e-47 |
| Msa0100840 | Msa0436310 | 0.808296 | 3.320849e-50 | -8.615850e-47 |
| Msa0100840 | Msa0436430 | 0.811293 | 7.525333e-51 | -8.615850e-47 |
| Msa0100840 | Msa0438440 | 0.802965 | 4.368240e-49 | -8.615850e-47 |
| Msa0100840 | Msa0453940 | -0.812781 | 3.567046e-51 | -8.615850e-47 |
| Msa0100840 | Msa0459920 | 0.802025 | 6.821636e-49 | -8.615850e-47 |
| Msa0100840 | Msa0463890 | -0.806098 | 9.700086e-50 | -8.615850e-47 |
| Msa0100840 | Msa0468050 | -0.801538 | 8.590674e-49 | -8.615850e-47 |
| Msa0100840 | Msa0479790 | 0.801610 | 8.301691e-49 | -8.615850e-47 |
| Msa0100840 | Msa0480260 | -0.803357 | 3.623498e-49 | -8.615850e-47 |
| Msa0100840 | Msa0498320 | 0.804986 | 1.659858e-49 | -8.615850e-47 |
| Msa0100840 | Msa0515400 | 0.804927 | 1.708055e-49 | -8.615850e-47 |
| Msa0100840 | Msa0516330 | 0.805834 | 1.102546e-49 | -8.615850e-47 |
| Msa0100840 | Msa0521190 | 0.806618 | 7.535925e-50 | -8.615850e-47 |
| Msa0100840 | Msa0524570 | 0.806145 | 9.483459e-50 | -8.615850e-47 |
| Msa0100840 | Msa0527210 | 0.804968 | 1.674024e-49 | -8.615850e-47 |
| Msa0100840 | Msa0542030 | 0.801851 | 7.408894e-49 | -8.615850e-47 |
| Msa0100840 | Msa0562680 | 0.804681 | 1.922402e-49 | -8.615850e-47 |
| Msa0100840 | Msa0565930 | 0.809703 | 1.659808e-50 | -8.615850e-47 |
| Msa0100840 | Msa0568810 | 0.810798 | 9.634791e-51 | -8.615850e-47 |
| Msa0100840 | Msa0572370 | 0.819837 | 9.418815e-53 | -8.615850e-47 |
| Msa0100840 | Msa0583810 | 0.802723 | 4.900611e-49 | -8.615850e-47 |
| Msa0100840 | Msa0598610 | 0.807358 | 5.255384e-50 | -8.615850e-47 |
| Msa0100840 | Msa0598680 | 0.813289 | 2.760102e-51 | -8.615850e-47 |
| Msa0100840 | Msa0621870 | 0.840916 | 6.515516e-58 | -8.615850e-47 |
| Msa0100840 | Msa0653090 | 0.801545 | 8.560086e-49 | -8.615850e-47 |
| Msa0100840 | Msa0675250 | 0.802796 | 4.732237e-49 | -8.615850e-47 |
| Msa0100840 | Msa0677590 | 0.817350 | 3.450906e-52 | -8.615850e-47 |
| Msa0100840 | Msa0701490 | -0.800283 | 1.549748e-48 | -8.615850e-47 |
| Msa0100840 | Msa0712100 | 0.809801 | 1.581116e-50 | -8.615850e-47 |
| Msa0100840 | Msa0721260 | -0.803177 | 3.947658e-49 | -8.615850e-47 |
| Msa0100840 | Msa0743630 | 0.860892 | 1.504459e-63 | -8.615850e-47 |
| Msa0100840 | Msa0749900 | 0.805956 | 1.039240e-49 | -8.615850e-47 |
| Msa0100840 | Msa0753410 | -0.803888 | 2.811874e-49 | -8.615850e-47 |
| Msa0100840 | Msa0781030 | 0.803410 | 3.532061e-49 | -8.615850e-47 |
| Msa0100840 | Msa0788490 | 0.821609 | 3.686749e-53 | -8.615850e-47 |
| Msa0100840 | Msa0807170 | 0.801266 | 9.766788e-49 | -8.615850e-47 |
| Msa0100840 | Msa0816390 | 0.827196 | 1.788250e-54 | -8.615850e-47 |
| Msa0100840 | Msa0824750 | 0.829432 | 5.165838e-55 | -8.615850e-47 |
| Msa0100840 | Msa0830120 | 0.802185 | 6.325206e-49 | -8.615850e-47 |
| Msa0100840 | Msa0846180 | 0.801619 | 8.268009e-49 | -8.615850e-47 |
| Msa0100840 | Msa0856790 | 0.812572 | 3.963281e-51 | -8.615850e-47 |
| Msa0100840 | Msa0863780 | 0.858033 | 1.087387e-62 | -8.615850e-47 |
| Msa0100840 | Msa0871910 | 0.801242 | 9.876242e-49 | -8.615850e-47 |
| Msa0100840 | Msa0880060 | 0.812394 | 4.333776e-51 | -8.615850e-47 |
| Msa0100840 | Msa0880370 | 0.802950 | 4.398147e-49 | -8.615850e-47 |
| Msa0100840 | Msa0882430 | -0.813443 | 2.552548e-51 | -8.615850e-47 |
| Msa0100840 | Msa0947520 | -0.805500 | 1.295578e-49 | -8.615850e-47 |
| Msa0100840 | Msa0968010 | 0.810408 | 1.169921e-50 | -8.615850e-47 |
| Msa0100840 | Msa0974570 | 0.819489 | 1.130958e-52 | -8.615850e-47 |
| Msa0100840 | Msa1008960 | 0.802100 | 6.585406e-49 | -8.615850e-47 |
| Msa0100840 | Msa1014530 | 0.853645 | 2.084465e-61 | -8.615850e-47 |
| Msa0100840 | Msa1015020 | 0.820843 | 5.537436e-53 | -8.615850e-47 |
| Msa0100840 | Msa1018720 | 0.826517 | 2.596966e-54 | -8.615850e-47 |
| Msa0100840 | Msa1018730 | 0.811259 | 7.657800e-51 | -8.615850e-47 |
| Msa0100840 | Msa1024120 | 0.803864 | 2.844050e-49 | -8.615850e-47 |
| Msa0100840 | Msa1040030 | 0.803380 | 3.583249e-49 | -8.615850e-47 |
| Msa0100840 | Msa1041620 | 0.825261 | 5.161283e-54 | -8.615850e-47 |
| Msa0100840 | Msa1055490 | 0.839066 | 1.979138e-57 | -8.615850e-47 |
| Msa0100840 | Msa1069770 | -0.806518 | 7.914074e-50 | -8.615850e-47 |
| Msa0100840 | Msa1081650 | 0.839373 | 1.647063e-57 | -8.615850e-47 |
| Msa0100840 | Msa1093250 | 0.808926 | 2.436568e-50 | -8.615850e-47 |
| Msa0100840 | Msa1096280 | 0.824899 | 6.284507e-54 | -8.615850e-47 |
| Msa0100840 | Msa1107950 | 0.800928 | 1.144891e-48 | -8.615850e-47 |
| Msa0100840 | Msa1122920 | 0.815122 | 1.086472e-51 | -8.615850e-47 |
| Msa0100840 | Msa1122930 | 0.822100 | 2.837577e-53 | -8.615850e-47 |
| Msa0100840 | Msa1147190 | 0.816661 | 4.929836e-52 | -8.615850e-47 |
| Msa0100840 | Msa1147200 | 0.805155 | 1.529889e-49 | -8.615850e-47 |
| Msa0100840 | Msa1166520 | 0.818155 | 2.271446e-52 | -8.615850e-47 |
| Msa0100840 | Msa1174450 | -0.813232 | 2.841047e-51 | -8.615850e-47 |
| Msa0100840 | Msa1177300 | 0.802228 | 6.198160e-49 | -8.615850e-47 |
| Msa0100840 | Msa1193680 | 0.806356 | 8.561359e-50 | -8.615850e-47 |
| Msa0100840 | Msa1196990 | 0.805205 | 1.493947e-49 | -8.615850e-47 |
| Msa0100840 | Msa1198870 | 0.848305 | 6.672761e-60 | -8.615850e-47 |
| Msa0100840 | Msa1223600 | 0.825393 | 4.803894e-54 | -8.615850e-47 |
| Msa0100840 | Msa1229880 | 0.810098 | 1.364675e-50 | -8.615850e-47 |
| Msa0100840 | Msa1260240 | 0.809445 | 1.886020e-50 | -8.615850e-47 |
| Msa0100840 | Msa1263460 | 0.805286 | 1.436616e-49 | -8.615850e-47 |
| Msa0100840 | Msa1265990 | 0.837196 | 5.995000e-57 | -8.615850e-47 |
| Msa0100840 | Msa1269550 | 0.807062 | 6.073345e-50 | -8.615850e-47 |
| Msa0100840 | Msa1293060 | 0.854672 | 1.052800e-61 | -8.615850e-47 |
| Msa0100840 | Msa1310620 | 0.801737 | 7.817703e-49 | -8.615850e-47 |
| Msa0100840 | Msa1314810 | -0.828035 | 1.124394e-54 | -8.615850e-47 |
| Msa0100840 | Msa1317090 | 0.816401 | 5.637359e-52 | -8.615850e-47 |
| Msa0100840 | Msa1345030 | -0.807822 | 4.188560e-50 | -8.615850e-47 |
| Msa0100840 | Msa1351370 | 0.802388 | 5.745468e-49 | -8.615850e-47 |
| Msa0100840 | Msa1357760 | 0.853985 | 1.663229e-61 | -8.615850e-47 |
| Msa0100840 | Msa1368800 | 0.809626 | 1.723871e-50 | -8.615850e-47 |
| Msa0100840 | Msa1379930 | 0.811186 | 7.938703e-51 | -8.615850e-47 |
| Msa0100840 | Msa1387650 | 0.801733 | 7.834051e-49 | -8.615850e-47 |
| Msa0100840 | Msa1391600 | 0.829996 | 3.765367e-55 | -8.615850e-47 |
| Msa0100840 | Msa1397550 | 0.834799 | 2.431646e-56 | -8.615850e-47 |
| Msa0100840 | Msa1414280 | 0.803502 | 3.381712e-49 | -8.615850e-47 |
| Msa0100840 | Msa1422900 | 0.859717 | 3.410204e-63 | -8.615850e-47 |
| Msa0100840 | Msa1423660 | -0.808475 | 3.041600e-50 | -8.615850e-47 |
| Msa0100840 | Msa1437650 | 0.805276 | 1.443437e-49 | -8.615850e-47 |
| Msa0100840 | Msa1438780 | 0.805615 | 1.225796e-49 | -8.615850e-47 |
| Msa0100840 | Msa1449510 | 0.823511 | 1.331472e-53 | -8.615850e-47 |
| Msa0100840 | Msa1459930 | -0.800272 | 1.558001e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100840 | MtrunA17_Chr1g0148681 | 95.694 | 418 | 17 | 1 | 6 | 423 | 1 | 417 | 0.0 | 826 |
| Msa0100840 | MtrunA17_Chr3g0138431 | 58.696 | 460 | 138 | 6 | 14 | 423 | 17 | 474 | 0.0 | 525 |
| Msa0100840 | MtrunA17_Chr2g0332181 | 46.296 | 432 | 204 | 6 | 8 | 423 | 10 | 429 | 7.21e-118 | 350 |
| Msa0100840 | MtrunA17_Chr2g0332171 | 59.727 | 293 | 115 | 3 | 134 | 423 | 193 | 485 | 4.23e-116 | 348 |
| Msa0100840 | MtrunA17_Chr3g0125051 | 51.292 | 271 | 132 | 0 | 143 | 413 | 221 | 491 | 1.40e-97 | 301 |
| Msa0100840 | MtrunA17_Chr3g0125041 | 49.818 | 275 | 136 | 1 | 146 | 418 | 227 | 501 | 6.20e-94 | 291 |
| Msa0100840 | MtrunA17_Chr1g0152871 | 48.772 | 285 | 142 | 3 | 139 | 420 | 68 | 351 | 1.63e-90 | 278 |
| Msa0100840 | MtrunA17_Chr3g0134401 | 47.860 | 257 | 134 | 0 | 162 | 418 | 74 | 330 | 6.38e-84 | 260 |
| Msa0100840 | MtrunA17_Chr3g0134421 | 46.691 | 272 | 143 | 1 | 149 | 418 | 71 | 342 | 9.28e-82 | 255 |
| Msa0100840 | MtrunA17_Chr3g0134411 | 45.221 | 272 | 147 | 1 | 149 | 418 | 78 | 349 | 1.78e-79 | 250 |
| Msa0100840 | MtrunA17_Chr3g0134441 | 48.485 | 264 | 134 | 2 | 155 | 418 | 61 | 322 | 2.10e-75 | 238 |
| Msa0100840 | MtrunA17_Chr7g0255771 | 42.125 | 273 | 153 | 5 | 146 | 416 | 182 | 451 | 4.91e-63 | 210 |
| Msa0100840 | MtrunA17_Chr5g0406741 | 40.441 | 272 | 154 | 4 | 146 | 416 | 155 | 419 | 3.08e-60 | 201 |
| Msa0100840 | MtrunA17_Chr5g0441371 | 41.328 | 271 | 150 | 6 | 148 | 416 | 150 | 413 | 4.54e-58 | 196 |
| Msa0100840 | MtrunA17_Chr3g0134431 | 43.902 | 246 | 115 | 4 | 166 | 409 | 13 | 237 | 5.23e-58 | 191 |
| Msa0100840 | MtrunA17_Chr8g0370671 | 39.350 | 277 | 156 | 6 | 143 | 416 | 156 | 423 | 9.32e-58 | 195 |
| Msa0100840 | MtrunA17_Chr8g0357001 | 42.857 | 217 | 117 | 3 | 162 | 378 | 486 | 695 | 9.57e-49 | 176 |
| Msa0100840 | MtrunA17_Chr3g0102851 | 34.298 | 242 | 143 | 9 | 159 | 393 | 29 | 261 | 1.49e-29 | 116 |
| Msa0100840 | MtrunA17_Chr3g0103471 | 33.891 | 239 | 144 | 8 | 144 | 377 | 4 | 233 | 9.06e-28 | 111 |
| Msa0100840 | MtrunA17_Chr3g0102861 | 31.765 | 255 | 160 | 6 | 144 | 393 | 4 | 249 | 8.15e-27 | 108 |
| Msa0100840 | MtrunA17_Chr3g0102621 | 29.811 | 265 | 157 | 8 | 159 | 403 | 25 | 280 | 8.35e-26 | 105 |
| Msa0100840 | MtrunA17_Chr3g0102631 | 35.106 | 188 | 111 | 6 | 213 | 393 | 1 | 184 | 1.10e-22 | 95.5 |
| Msa0100840 | MtrunA17_Chr3g0102651 | 35.106 | 188 | 111 | 6 | 213 | 393 | 1 | 184 | 1.10e-22 | 95.5 |
| Msa0100840 | MtrunA17_Chr3g0102661 | 35.106 | 188 | 111 | 6 | 213 | 393 | 1 | 184 | 1.10e-22 | 95.5 |
| Msa0100840 | MtrunA17_Chr3g0102671 | 35.106 | 188 | 111 | 6 | 213 | 393 | 1 | 184 | 1.10e-22 | 95.5 |
| Msa0100840 | MtrunA17_Chr5g0418901 | 48.101 | 79 | 41 | 0 | 217 | 295 | 7 | 85 | 2.27e-21 | 88.2 |
| Msa0100840 | MtrunA17_Chr1g0161581 | 36.723 | 177 | 91 | 4 | 182 | 357 | 364 | 520 | 4.70e-20 | 92.4 |
| Msa0100840 | MtrunA17_Chr6g0462911 | 29.289 | 239 | 145 | 9 | 154 | 387 | 38 | 257 | 1.34e-16 | 80.5 |
| Msa0100840 | MtrunA17_Chr5g0398791 | 29.932 | 147 | 102 | 1 | 188 | 334 | 27 | 172 | 3.85e-16 | 75.9 |
| Msa0100840 | MtrunA17_Chr6g0462981 | 27.839 | 273 | 171 | 8 | 154 | 419 | 38 | 291 | 8.67e-15 | 74.7 |
| Msa0100840 | MtrunA17_Chr3g0133211 | 27.933 | 179 | 124 | 3 | 173 | 346 | 73 | 251 | 1.25e-14 | 75.1 |
| Msa0100840 | MtrunA17_Chr4g0041721 | 26.257 | 179 | 127 | 3 | 173 | 346 | 68 | 246 | 2.92e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100840 | AT5G11300.1 | 51.878 | 426 | 172 | 6 | 14 | 423 | 26 | 434 | 2.29e-138 | 403 |
| Msa0100840 | AT5G25380.4 | 50.000 | 422 | 195 | 7 | 13 | 423 | 25 | 441 | 1.44e-127 | 376 |
| Msa0100840 | AT5G25380.3 | 49.535 | 430 | 179 | 7 | 13 | 423 | 25 | 435 | 7.12e-127 | 374 |
| Msa0100840 | AT5G25380.1 | 49.535 | 430 | 179 | 7 | 13 | 423 | 25 | 435 | 7.12e-127 | 374 |
| Msa0100840 | AT1G80370.1 | 48.139 | 403 | 207 | 1 | 15 | 415 | 48 | 450 | 8.94e-125 | 369 |
| Msa0100840 | AT5G25380.2 | 49.395 | 413 | 172 | 6 | 13 | 407 | 25 | 418 | 3.31e-122 | 361 |
| Msa0100840 | AT1G15570.1 | 44.420 | 457 | 208 | 8 | 6 | 423 | 1 | 450 | 3.58e-119 | 355 |
| Msa0100840 | AT5G11300.2 | 49.725 | 364 | 151 | 5 | 14 | 362 | 26 | 372 | 2.06e-108 | 326 |
| Msa0100840 | AT1G44110.1 | 52.060 | 267 | 128 | 0 | 146 | 412 | 178 | 444 | 1.56e-98 | 302 |
| Msa0100840 | AT5G43080.1 | 50.554 | 271 | 134 | 0 | 148 | 418 | 73 | 343 | 2.66e-96 | 293 |
| Msa0100840 | AT5G43080.2 | 50.554 | 271 | 129 | 1 | 148 | 418 | 73 | 338 | 2.26e-94 | 288 |
| Msa0100840 | AT1G47210.2 | 50.916 | 273 | 132 | 1 | 148 | 418 | 88 | 360 | 2.48e-94 | 288 |
| Msa0100840 | AT1G77390.1 | 40.759 | 395 | 212 | 5 | 38 | 412 | 36 | 428 | 4.65e-92 | 285 |
| Msa0100840 | AT1G47230.1 | 48.913 | 276 | 135 | 2 | 147 | 418 | 80 | 353 | 4.26e-90 | 277 |
| Msa0100840 | AT1G47230.2 | 48.736 | 277 | 135 | 3 | 147 | 418 | 80 | 354 | 3.41e-88 | 273 |
| Msa0100840 | AT1G47220.1 | 49.815 | 271 | 130 | 2 | 148 | 414 | 42 | 310 | 1.70e-84 | 261 |
| Msa0100840 | AT1G76310.1 | 40.925 | 281 | 157 | 5 | 138 | 416 | 152 | 425 | 6.53e-62 | 206 |
| Msa0100840 | AT1G20610.1 | 39.706 | 272 | 156 | 4 | 146 | 416 | 160 | 424 | 1.63e-59 | 200 |
| Msa0100840 | AT1G76310.2 | 43.802 | 242 | 127 | 5 | 138 | 377 | 152 | 386 | 1.40e-57 | 194 |
| Msa0100840 | AT5G06150.1 | 42.279 | 272 | 148 | 5 | 146 | 416 | 165 | 428 | 2.83e-56 | 192 |
| Msa0100840 | AT1G76310.3 | 37.217 | 309 | 157 | 6 | 138 | 416 | 152 | 453 | 5.96e-56 | 191 |
| Msa0100840 | AT2G26760.1 | 40.672 | 268 | 148 | 7 | 140 | 403 | 105 | 365 | 5.24e-54 | 184 |
| Msa0100840 | AT3G11520.1 | 42.353 | 255 | 139 | 4 | 162 | 416 | 159 | 405 | 7.01e-53 | 182 |
| Msa0100840 | AT2G17620.1 | 36.056 | 355 | 193 | 9 | 60 | 412 | 92 | 414 | 5.36e-52 | 180 |
| Msa0100840 | AT4G37490.1 | 39.716 | 282 | 147 | 8 | 146 | 416 | 148 | 417 | 2.08e-51 | 179 |
| Msa0100840 | AT3G11520.2 | 45.291 | 223 | 114 | 4 | 162 | 384 | 159 | 373 | 8.52e-51 | 176 |
| Msa0100840 | AT4G35620.1 | 40.221 | 271 | 148 | 7 | 146 | 412 | 155 | 415 | 3.80e-49 | 172 |
| Msa0100840 | AT1G16330.1 | 37.647 | 255 | 152 | 3 | 162 | 416 | 395 | 642 | 5.24e-48 | 174 |
| Msa0100840 | AT4G35620.2 | 42.797 | 236 | 121 | 7 | 146 | 377 | 155 | 380 | 7.64e-46 | 162 |
| Msa0100840 | AT1G76310.4 | 45.251 | 179 | 95 | 3 | 138 | 314 | 152 | 329 | 8.00e-44 | 156 |
| Msa0100840 | AT5G06150.2 | 45.294 | 170 | 90 | 3 | 146 | 314 | 165 | 332 | 6.39e-38 | 140 |
| Msa0100840 | AT1G20590.1 | 43.312 | 157 | 83 | 2 | 221 | 377 | 63 | 213 | 3.00e-36 | 134 |
| Msa0100840 | AT1G47210.1 | 50.467 | 107 | 47 | 2 | 148 | 250 | 88 | 192 | 2.66e-29 | 113 |
| Msa0100840 | AT1G34460.6 | 36.095 | 169 | 85 | 4 | 146 | 313 | 255 | 401 | 1.42e-20 | 94.4 |
| Msa0100840 | AT1G34460.3 | 36.095 | 169 | 85 | 4 | 146 | 313 | 255 | 401 | 1.42e-20 | 94.4 |
| Msa0100840 | AT1G34460.8 | 36.095 | 169 | 85 | 4 | 146 | 313 | 255 | 401 | 1.42e-20 | 94.4 |
| Msa0100840 | AT1G34460.1 | 36.095 | 169 | 85 | 4 | 146 | 313 | 255 | 401 | 1.42e-20 | 94.4 |
| Msa0100840 | AT1G34460.9 | 36.095 | 169 | 85 | 4 | 146 | 313 | 241 | 387 | 1.51e-20 | 94.0 |
| Msa0100840 | AT1G34460.7 | 36.095 | 169 | 85 | 4 | 146 | 313 | 255 | 401 | 1.72e-20 | 94.0 |
| Msa0100840 | AT1G34460.5 | 36.095 | 169 | 85 | 4 | 146 | 313 | 255 | 401 | 1.95e-20 | 94.0 |
| Msa0100840 | AT1G34460.2 | 36.095 | 169 | 85 | 4 | 146 | 313 | 252 | 398 | 2.16e-20 | 93.6 |
| Msa0100840 | AT1G34460.4 | 36.095 | 169 | 85 | 4 | 146 | 313 | 252 | 398 | 2.16e-20 | 93.6 |
| Msa0100840 | AT1G14750.1 | 32.432 | 185 | 112 | 5 | 171 | 351 | 365 | 540 | 1.05e-16 | 82.8 |
| Msa0100840 | AT1G14750.3 | 32.432 | 185 | 112 | 5 | 171 | 351 | 365 | 540 | 1.09e-16 | 82.8 |
| Msa0100840 | AT1G14750.2 | 32.432 | 185 | 112 | 5 | 171 | 351 | 197 | 372 | 1.25e-16 | 81.6 |
| Msa0100840 | AT1G14750.4 | 32.432 | 185 | 111 | 6 | 171 | 351 | 197 | 371 | 2.16e-15 | 78.2 |
| Msa0100840 | AT1G70210.1 | 30.303 | 231 | 143 | 7 | 128 | 349 | 17 | 238 | 4.34e-15 | 76.6 |
Find 107 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCAAGGTTTCCATGTAAT+TGG | 0.188546 | 1_3:+7263896 | None:intergenic |
| AGTTAAAGGATTCTCCTATT+TGG | 0.207301 | 1_3:-7264191 | Msa0100840:CDS |
| CCACAGAAGGCTGCACTTGC+AGG | 0.212680 | 1_3:+7264828 | None:intergenic |
| CTCTGCCTTTGCATCCTCTT+TGG | 0.224088 | 1_3:+7264895 | None:intergenic |
| GGACATTGATTCGAAGTTAA+AGG | 0.247922 | 1_3:-7264205 | Msa0100840:CDS |
| AAATGAAAAGTACCTGTATT+TGG | 0.263412 | 1_3:+7264767 | None:intergenic |
| TGTTCATTATAACATAAATA+AGG | 0.265357 | 1_3:+7261433 | None:intergenic |
| TTGTTATTCATTTCCAATTA+CGG | 0.287237 | 1_3:-7261591 | Msa0100840:three_prime_UTR |
| TGAATACTAGTGTATATATC+AGG | 0.293341 | 1_3:+7264156 | None:intergenic |
| AGTACGGAATAGCCCGTAAT+TGG | 0.299223 | 1_3:+7261578 | None:intergenic |
| ATGATGTCTCCTTGCAAGTT+TGG | 0.320999 | 1_3:-7264922 | Msa0100840:CDS |
| AAAAGAGATTCCACCGGTTT+CGG | 0.329052 | 1_3:+7261727 | None:intergenic |
| TGTTATTCATTTCCAATTAC+GGG | 0.340650 | 1_3:-7261590 | Msa0100840:three_prime_UTR |
| CACAGCAGATGCAGCTATCT+TGG | 0.343056 | 1_3:+7262184 | None:intergenic |
| TCAAGCTGATCTGGAATTCC+TGG | 0.345312 | 1_3:-7262264 | Msa0100840:CDS |
| AGCAAAATGGACAAAGAAAA+TGG | 0.345326 | 1_3:-7266367 | Msa0100840:CDS |
| ATATTGATAGGTATTGAAAA+TGG | 0.354850 | 1_3:-7262717 | Msa0100840:intron |
| TACAGTGAGGGAGAGCAAAA+TGG | 0.378343 | 1_3:-7266380 | Msa0100840:intron |
| AGAGACTAGAAAATGACTTT+AGG | 0.380874 | 1_3:-7261683 | Msa0100840:three_prime_UTR |
| TGGAAGAAGTTTGTGCTACT+TGG | 0.381330 | 1_3:+7262534 | None:intergenic |
| TCAGGTTGCTCAAGCTGATC+TGG | 0.388931 | 1_3:-7262273 | Msa0100840:intron |
| CTGAGAAATGTCTTGATTGT+TGG | 0.391036 | 1_3:+7262653 | None:intergenic |
| GTTTCCATGTAATTGGCTAA+TGG | 0.400537 | 1_3:+7263903 | None:intergenic |
| ATTCCGTACTTGTGACTTGT+AGG | 0.403605 | 1_3:-7261565 | Msa0100840:three_prime_UTR |
| AGTTAATTATACCTCTTGTC+TGG | 0.420863 | 1_3:+7262823 | None:intergenic |
| ATGGATGCTCTGACTGGTTG+AGG | 0.422309 | 1_3:+7262144 | None:intergenic |
| AATGAACAAGCTGTTGTTGT+TGG | 0.425751 | 1_3:-7266289 | Msa0100840:CDS |
| TGCATTGAGACGACAACCTT+TGG | 0.430632 | 1_3:+7261937 | None:intergenic |
| TTTGCAAATCCATCAGTTCA+AGG | 0.431764 | 1_3:+7261966 | None:intergenic |
| GGGGCATAAGAAGTCCAAAT+AGG | 0.432031 | 1_3:+7264177 | None:intergenic |
| GATTCTGGTTGACTGGCTTG+TGG | 0.442775 | 1_3:-7263847 | Msa0100840:CDS |
| AAGCAACTGCAGCCTTCGTT+TGG | 0.443429 | 1_3:+7263421 | None:intergenic |
| AGCAAGGGCTAAAGCTTTGA+AGG | 0.451859 | 1_3:-7266323 | Msa0100840:CDS |
| AACTACTGTCCTTGAACTGA+TGG | 0.453205 | 1_3:-7261975 | Msa0100840:CDS |
| TATCTGAATCAAGATATATA+TGG | 0.453894 | 1_3:-7261658 | Msa0100840:three_prime_UTR |
| AAATTCCCTGCTTTCAATGC+AGG | 0.457696 | 1_3:-7264804 | Msa0100840:CDS |
| ACTAAGTGCCTCAGTTGGCT+TGG | 0.457791 | 1_3:-7264235 | Msa0100840:CDS |
| ACAGCAAGGTAAAGTGTGTC+TGG | 0.458805 | 1_3:+7263482 | None:intergenic |
| TCGTTTGGTAATCAAACGTT+GGG | 0.460508 | 1_3:+7263436 | None:intergenic |
| CTAAGTGCCTCAGTTGGCTT+GGG | 0.464985 | 1_3:-7264234 | Msa0100840:CDS |
| CTCAGTTGGCTTGGGAATTG+TGG | 0.470396 | 1_3:-7264226 | Msa0100840:CDS |
| GGCGAATTTGTCTCCGAAAC+CGG | 0.473905 | 1_3:-7261740 | Msa0100840:CDS |
| TGGATGCTCTGACTGGTTGA+GGG | 0.474594 | 1_3:+7262145 | None:intergenic |
| TTTGTATAGTGCTCCAGAGT+TGG | 0.476724 | 1_3:+7262019 | None:intergenic |
| AATGAATAACAACAATTTGA+AGG | 0.479469 | 1_3:+7261602 | None:intergenic |
| TCCATTACACAGAAGAAAGA+AGG | 0.481135 | 1_3:-7264980 | Msa0100840:intron |
| TATGAAGAGATTTGTGCTCC+TGG | 0.485204 | 1_3:-7262884 | Msa0100840:CDS |
| TCAACCAGTCAGAGCATCCA+TGG | 0.494706 | 1_3:-7262142 | Msa0100840:CDS |
| TCAGAGCTTATAATATATCA+TGG | 0.499026 | 1_3:+7266704 | None:intergenic |
| TGTAGGATGGTACCAACCTC+TGG | 0.500087 | 1_3:-7261548 | Msa0100840:three_prime_UTR |
| AAACGAAGGCTGCAGTTGCT+TGG | 0.504335 | 1_3:-7263419 | Msa0100840:CDS |
| ATGAAGAGATTTGTGCTCCT+GGG | 0.505750 | 1_3:-7262883 | Msa0100840:CDS |
| GAGTGTCCTGCATTGAAAGC+AGG | 0.509049 | 1_3:+7264798 | None:intergenic |
| GGTATTGAAAATGGAGAAAG+AGG | 0.514785 | 1_3:-7262708 | Msa0100840:CDS |
| CCTGCAAGTGCAGCCTTCTG+TGG | 0.517202 | 1_3:-7264828 | Msa0100840:CDS |
| CAACAATCAAGACATTTCTC+AGG | 0.517270 | 1_3:-7262652 | Msa0100840:intron |
| AGACCCATGGATGCTCTGAC+TGG | 0.519969 | 1_3:+7262138 | None:intergenic |
| ACTCTCAACTCTCCAAATAC+AGG | 0.521458 | 1_3:-7264779 | Msa0100840:intron |
| TTAAATCTCTCCAGTGTGAA+AGG | 0.524126 | 1_3:-7263929 | Msa0100840:intron |
| TGGTAATCAAACGTTGGGAA+AGG | 0.528424 | 1_3:+7263441 | None:intergenic |
| TTATTTGCAGAATCCAACTC+TGG | 0.529754 | 1_3:-7262032 | Msa0100840:intron |
| TTTGGTTGTCCAAACTTGCA+AGG | 0.533560 | 1_3:+7264913 | None:intergenic |
| GCTCTGCTAAATAGTTTGCC+AGG | 0.535403 | 1_3:+7262246 | None:intergenic |
| AGACATCACTCCCGGCATGA+GGG | 0.538658 | 1_3:-7263871 | Msa0100840:CDS |
| CACAGAAGGCTGCACTTGCA+GGG | 0.543806 | 1_3:+7264829 | None:intergenic |
| ATCATGTTCTGAAGCTACAT+TGG | 0.550667 | 1_3:+7264940 | None:intergenic |
| TTCGTTTGGTAATCAAACGT+TGG | 0.551985 | 1_3:+7263435 | None:intergenic |
| GAATACTAGTGTATATATCA+GGG | 0.553135 | 1_3:+7264157 | None:intergenic |
| TTGCAGCAAGACATCACTCC+CGG | 0.557538 | 1_3:-7263879 | Msa0100840:CDS |
| CGTACTTGTGACTTGTAGGA+TGG | 0.557941 | 1_3:-7261561 | Msa0100840:three_prime_UTR |
| AAGACATCACTCCCGGCATG+AGG | 0.557995 | 1_3:-7263872 | Msa0100840:CDS |
| CTGCTGTGTTACTTGCAAGA+TGG | 0.565071 | 1_3:-7262169 | Msa0100840:CDS |
| AAGAAAATGGTGTGAATGTG+AGG | 0.565412 | 1_3:-7266354 | Msa0100840:CDS |
| TCTGGTTGACTGGCTTGTGG+AGG | 0.565987 | 1_3:-7263844 | Msa0100840:intron |
| GCAGATGCAGCTATCTTGGA+AGG | 0.568316 | 1_3:+7262188 | None:intergenic |
| AGTGTCCTGCATTGAAAGCA+GGG | 0.570481 | 1_3:+7264799 | None:intergenic |
| GATCAAGAAGCACCAGAGGT+TGG | 0.576746 | 1_3:+7261536 | None:intergenic |
| ACGCAAAAGTCTTCAACCCC+AGG | 0.583284 | 1_3:+7262866 | None:intergenic |
| AGTAGCACAAACTTCTTCCA+AGG | 0.585183 | 1_3:-7262531 | Msa0100840:intron |
| GACAACCAAAGAGGATGCAA+AGG | 0.590161 | 1_3:-7264900 | Msa0100840:CDS |
| GAGGCCATTAGCCAATTACA+TGG | 0.590812 | 1_3:-7263907 | Msa0100840:CDS |
| ATGTGAGGGTGACTCGAGCA+AGG | 0.595779 | 1_3:-7266339 | Msa0100840:CDS |
| GACATCACTCCCGGCATGAG+GGG | 0.600953 | 1_3:-7263870 | Msa0100840:CDS |
| GGGAGTGATGTCTTGCTGCA+AGG | 0.604746 | 1_3:+7263881 | None:intergenic |
| TCCTAGAAAAGAGATTCCAC+CGG | 0.607987 | 1_3:+7261721 | None:intergenic |
| TGTAGTGAATTATAAAATGA+CGG | 0.610081 | 1_3:-7261509 | Msa0100840:three_prime_UTR |
| ACATCACTCCCGGCATGAGG+GGG | 0.610619 | 1_3:-7263869 | Msa0100840:CDS |
| GATTTGCAAATTAACACCAA+AGG | 0.613808 | 1_3:-7261953 | Msa0100840:CDS |
| AGTAGATCAAGAAGCACCAG+AGG | 0.621197 | 1_3:+7261532 | None:intergenic |
| CATCCTACAAGTCACAAGTA+CGG | 0.621273 | 1_3:+7261562 | None:intergenic |
| GATCAATGAGATTCACAGCA+AGG | 0.622155 | 1_3:+7263468 | None:intergenic |
| GCAAGTTTGGACAACCAAAG+AGG | 0.622371 | 1_3:-7264909 | Msa0100840:CDS |
| CAACCAGTCAGAGCATCCAT+GGG | 0.628847 | 1_3:-7262141 | Msa0100840:intron |
| TAACACATACTCCAGACAAG+AGG | 0.630206 | 1_3:-7262834 | Msa0100840:intron |
| TGTGAGGGTGACTCGAGCAA+GGG | 0.633321 | 1_3:-7266338 | Msa0100840:CDS |
| TGAATCAAGATATATATGGA+AGG | 0.633673 | 1_3:-7261654 | Msa0100840:three_prime_UTR |
| AACGTTTGATTACCAAACGA+AGG | 0.634318 | 1_3:-7263433 | Msa0100840:CDS |
| TGAAGAGATTTGTGCTCCTG+GGG | 0.637519 | 1_3:-7262882 | Msa0100840:CDS |
| CCTATGACAGTTCAATAGTG+TGG | 0.639183 | 1_3:-7261761 | Msa0100840:intron |
| CACTAGTATTCATGTCAGAG+AGG | 0.642881 | 1_3:-7264145 | Msa0100840:intron |
| AAGTACAGAAATGAAGTGTG+TGG | 0.643059 | 1_3:+7266768 | None:intergenic |
| GAGAAACTAAGTGCCTCAGT+TGG | 0.643191 | 1_3:-7264240 | Msa0100840:CDS |
| CACAATTCCCAAGCCAACTG+AGG | 0.645149 | 1_3:+7264227 | None:intergenic |
| AATCTCTCCAGTGTGAAAGG+AGG | 0.664729 | 1_3:-7263926 | Msa0100840:intron |
| GAATTTGTCTCCGAAACCGG+TGG | 0.670360 | 1_3:-7261737 | Msa0100840:CDS |
| AATACTAGTGTATATATCAG+GGG | 0.674606 | 1_3:+7264158 | None:intergenic |
| AGAAAATGGTGTGAATGTGA+GGG | 0.707664 | 1_3:-7266353 | Msa0100840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATTATTATTATTATTA+TGG | - | chr1_3:7262080-7262099 | Msa0100840:intron | 0.0% |
| !! | ATTATTATTATTATTGAGAT+TGG | - | chr1_3:7262114-7262133 | Msa0100840:intron | 10.0% |
| !! | AAAATATATACATAATTTCT+TGG | - | chr1_3:7262476-7262495 | Msa0100840:intron | 10.0% |
| !!! | TATGAATTGAAATAATTTGT+AGG | - | chr1_3:7262174-7262193 | Msa0100840:CDS | 15.0% |
| !! | AGTTACAAATTAATTTAAAC+AGG | + | chr1_3:7263230-7263249 | None:intergenic | 15.0% |
| !! | TTTCATTTATTGGATATAAT+TGG | - | chr1_3:7263496-7263515 | Msa0100840:CDS | 15.0% |
| !!! | TTGTTATTTTTTATCTTGAT+TGG | - | chr1_3:7263959-7263978 | Msa0100840:intron | 15.0% |
| !!! | GTCTTTTTTTTTTTTTCATT+TGG | - | chr1_3:7264141-7264160 | Msa0100840:intron | 15.0% |
| !! | TAATCACTATAAATCTATAA+TGG | + | chr1_3:7264436-7264455 | None:intergenic | 15.0% |
| !!! | AATTATTTAAGATTGTATAC+TGG | + | chr1_3:7264577-7264596 | None:intergenic | 15.0% |
| !!! | TATTTTTAAACTTGGTAAAT+CGG | + | chr1_3:7265037-7265056 | None:intergenic | 15.0% |
| !!! | ACATTTCATATTTTTAAACT+TGG | + | chr1_3:7265045-7265064 | None:intergenic | 15.0% |
| !!! | ATAATTAACTTTTGGTATTA+TGG | - | chr1_3:7265438-7265457 | Msa0100840:intron | 15.0% |
| !!! | TAATTTTTTTTTCTGTTATC+AGG | - | chr1_3:7265957-7265976 | Msa0100840:intron | 15.0% |
| !! | TGTTCATTATAACATAAATA+AGG | + | chr1_3:7266818-7266837 | None:intergenic | 15.0% |
| !!! | GTTGAATTTTTATAACAATG+TGG | + | chr1_3:7261693-7261712 | None:intergenic | 20.0% |
| !!! | ATAAAAACAAGCATTTTGTA+TGG | - | chr1_3:7262222-7262241 | Msa0100840:CDS | 20.0% |
| !!! | TTTTATATAAACTTTCAACG+AGG | + | chr1_3:7262268-7262287 | None:intergenic | 20.0% |
| !! | GTTAACGATTTAAATTACTA+AGG | + | chr1_3:7262349-7262368 | None:intergenic | 20.0% |
| !! | AGTAATTTAAATCGTTAACA+TGG | - | chr1_3:7262350-7262369 | Msa0100840:intron | 20.0% |
| !!! | TTTTTATTACGTACAATAGA+TGG | - | chr1_3:7262384-7262403 | Msa0100840:intron | 20.0% |
| !!! | ATATTTTAACACAATTTGAG+TGG | + | chr1_3:7262463-7262482 | None:intergenic | 20.0% |
| !! | AACCAACAAATGAATATAAA+AGG | + | chr1_3:7262620-7262639 | None:intergenic | 20.0% |
| !! | TTTAGTAAAACTTCAAATGA+TGG | + | chr1_3:7262840-7262859 | None:intergenic | 20.0% |
| !!! | AATGATTGTATACTTTGAAA+GGG | - | chr1_3:7262884-7262903 | Msa0100840:CDS | 20.0% |
| !!! | AATGAGATTTTGTAAATCAA+TGG | - | chr1_3:7263178-7263197 | Msa0100840:intron | 20.0% |
| !!! | TTAATTTGTAACTACTGATT+TGG | - | chr1_3:7263237-7263256 | Msa0100840:intron | 20.0% |
| !! | TTGAATGTGAAATAAGAAAT+AGG | + | chr1_3:7263690-7263709 | None:intergenic | 20.0% |
| !!! | AATTGAATTGCATCAATTTT+TGG | - | chr1_3:7264676-7264695 | Msa0100840:intron | 20.0% |
| !!! | GTTAGAAAAGAGTATAAAAA+TGG | - | chr1_3:7265179-7265198 | Msa0100840:intron | 20.0% |
| !!! | TCTTTTTTTCTTTACTTTTG+TGG | - | chr1_3:7265330-7265349 | Msa0100840:intron | 20.0% |
| !!! | ATATTGATAGGTATTGAAAA+TGG | - | chr1_3:7265531-7265550 | Msa0100840:intron | 20.0% |
| !! | AAAAGAGAAACATATGAAAT+TGG | + | chr1_3:7266431-7266450 | None:intergenic | 20.0% |
| !! | TATCTGAATCAAGATATATA+TGG | - | chr1_3:7266590-7266609 | Msa0100840:intron | 20.0% |
| !! | AATGAATAACAACAATTTGA+AGG | + | chr1_3:7266649-7266668 | None:intergenic | 20.0% |
| !!! | TTGTTATTCATTTCCAATTA+CGG | - | chr1_3:7266657-7266676 | Msa0100840:intron | 20.0% |
| !! | TGTAGTGAATTATAAAATGA+CGG | - | chr1_3:7266739-7266758 | Msa0100840:five_prime_UTR | 20.0% |
| ! | TCAGAGCTTATAATATATCA+TGG | + | chr1_3:7261547-7261566 | None:intergenic | 25.0% |
| ! | AATCATAACATAGAAGAAAG+TGG | + | chr1_3:7261609-7261628 | None:intergenic | 25.0% |
| !! | TACTCATACATCAAATTTTG+AGG | - | chr1_3:7262027-7262046 | Msa0100840:intron | 25.0% |
| !!! | GAATTTTGATGTCAAACTTA+TGG | + | chr1_3:7262327-7262346 | None:intergenic | 25.0% |
| ! | CAACAAATGAATATAAAAGG+TGG | + | chr1_3:7262617-7262636 | None:intergenic | 25.0% |
| !! | CACCTTTTATATTCATTTGT+TGG | - | chr1_3:7262615-7262634 | Msa0100840:intron | 25.0% |
| ! | TGTTGCATATATAAAAGAGT+TGG | - | chr1_3:7262684-7262703 | Msa0100840:CDS | 25.0% |
| ! | AGTATACAATCATTGAGTTT+AGG | + | chr1_3:7262878-7262897 | None:intergenic | 25.0% |
| ! | CAATGATTGTATACTTTGAA+AGG | - | chr1_3:7262883-7262902 | Msa0100840:CDS | 25.0% |
| !! | TATACTTTGAAAGGGAAAAA+AGG | - | chr1_3:7262892-7262911 | Msa0100840:intron | 25.0% |
| !! | AAAAGGCAATTATGTTTTCA+TGG | - | chr1_3:7262909-7262928 | Msa0100840:intron | 25.0% |
| !! | TTGCAATATAAAGCTTTTAG+AGG | + | chr1_3:7263085-7263104 | None:intergenic | 25.0% |
| !!! | AGTCAAATAGTTCTAAATTG+TGG | + | chr1_3:7263129-7263148 | None:intergenic | 25.0% |
| !! | CTCTATATTTTGTCCATAAA+AGG | - | chr1_3:7263147-7263166 | Msa0100840:intron | 25.0% |
| !! | TCATTCAATTAGTCCTTTTA+TGG | + | chr1_3:7263163-7263182 | None:intergenic | 25.0% |
| !!! | AAATGAAAAGTACCTGTATT+TGG | + | chr1_3:7263484-7263503 | None:intergenic | 25.0% |
| !! | TACAGGTACTTTTCATTTAT+TGG | - | chr1_3:7263486-7263505 | Msa0100840:CDS | 25.0% |
| ! | ATATAATTGGTATGCACTAT+CGG | - | chr1_3:7263509-7263528 | Msa0100840:CDS | 25.0% |
| !! | TTTTACGAACTAACATAGAA+AGG | + | chr1_3:7263590-7263609 | None:intergenic | 25.0% |
| ! | ATAATATGATGAGATGTGAT+TGG | - | chr1_3:7263625-7263644 | Msa0100840:intron | 25.0% |
| ! | TAGTAATTACTAACTGAACA+AGG | - | chr1_3:7263780-7263799 | Msa0100840:intron | 25.0% |
| ! | AATACTAGTGTATATATCAG+GGG | + | chr1_3:7264093-7264112 | None:intergenic | 25.0% |
| ! | GAATACTAGTGTATATATCA+GGG | + | chr1_3:7264094-7264113 | None:intergenic | 25.0% |
| ! | TGAATACTAGTGTATATATC+AGG | + | chr1_3:7264095-7264114 | None:intergenic | 25.0% |
| !!! | ATCAATTTTTGGCTGTTTAA+TGG | - | chr1_3:7264687-7264706 | Msa0100840:intron | 25.0% |
| !!! | GCTTTGTTATATTCTTTTTC+AGG | - | chr1_3:7264720-7264739 | Msa0100840:intron | 25.0% |
| !! | TACTTTGTAATTTTCCTAGT+TGG | - | chr1_3:7264886-7264905 | Msa0100840:CDS | 25.0% |
| ! | AATAATAGCAAAGCAAAACT+TGG | + | chr1_3:7265144-7265163 | None:intergenic | 25.0% |
| !! | CATTCAAGATCAAAATTTTG+TGG | + | chr1_3:7265219-7265238 | None:intergenic | 25.0% |
| !!! | CAAGAGGTATAATTAACTTT+TGG | - | chr1_3:7265430-7265449 | Msa0100840:intron | 25.0% |
| !! | GCAATTTAGTTTAAGCTTAA+TGG | - | chr1_3:7265654-7265673 | Msa0100840:intron | 25.0% |
| ! | ATGTGACTCTAATTAGATTT+AGG | + | chr1_3:7266190-7266209 | None:intergenic | 25.0% |
| ! | TGAAAAATATCAACATCAGA+AGG | - | chr1_3:7266339-7266358 | Msa0100840:CDS | 25.0% |
| ! | AATTTAACCACAAAGAGAAT+AGG | + | chr1_3:7266401-7266420 | None:intergenic | 25.0% |
| !! | TCTCTTTTAACATAATGAAG+AGG | - | chr1_3:7266443-7266462 | Msa0100840:intron | 25.0% |
| ! | TGAATCAAGATATATATGGA+AGG | - | chr1_3:7266594-7266613 | Msa0100840:intron | 25.0% |
| ! | TGTTATTCATTTCCAATTAC+GGG | - | chr1_3:7266658-7266677 | Msa0100840:intron | 25.0% |
| AGCAAAATGGACAAAGAAAA+TGG | - | chr1_3:7261881-7261900 | Msa0100840:intron | 30.0% | |
| ! | ATGTGATTTTGCAGAAATGT+TGG | + | chr1_3:7261999-7262018 | None:intergenic | 30.0% |
| AATCGTTAACATGGTTCAAA+TGG | - | chr1_3:7262359-7262378 | Msa0100840:intron | 30.0% | |
| ATCGTTAACATGGTTCAAAT+GGG | - | chr1_3:7262360-7262379 | Msa0100840:intron | 30.0% | |
| ACGTACAATAGATGGTTAAA+CGG | - | chr1_3:7262392-7262411 | Msa0100840:intron | 30.0% | |
| AACACAATTTGAGTGGTTAA+TGG | + | chr1_3:7262456-7262475 | None:intergenic | 30.0% | |
| TTGTAGTTAATTGTGTTGAG+TGG | - | chr1_3:7262574-7262593 | Msa0100840:intron | 30.0% | |
| ! | TCCTAAGGCATTAGTTATAT+GGG | + | chr1_3:7262710-7262729 | None:intergenic | 30.0% |
| ! | ATCCTAAGGCATTAGTTATA+TGG | + | chr1_3:7262711-7262730 | None:intergenic | 30.0% |
| ! | TAACTAATGCCTTAGGATTT+TGG | - | chr1_3:7262713-7262732 | Msa0100840:intron | 30.0% |
| ! | AACTAATGCCTTAGGATTTT+GGG | - | chr1_3:7262714-7262733 | Msa0100840:intron | 30.0% |
| !! | AGTTGATGGTTAATGATGTT+GGG | + | chr1_3:7262805-7262824 | None:intergenic | 30.0% |
| !! | AAGTTGATGGTTAATGATGT+TGG | + | chr1_3:7262806-7262825 | None:intergenic | 30.0% |
| !! | GGTTAATTACGTTAAGTTGA+TGG | + | chr1_3:7262819-7262838 | None:intergenic | 30.0% |
| TGGATAATCTTAACCAAACA+TGG | - | chr1_3:7262929-7262948 | Msa0100840:intron | 30.0% | |
| ! | ATTCAAGATTAGTCCATGTT+TGG | + | chr1_3:7262945-7262964 | None:intergenic | 30.0% |
| TTTGATATTGCATCAAAACG+CGG | - | chr1_3:7263026-7263045 | Msa0100840:intron | 30.0% | |
| CGTATCACAATGATAATTGT+GGG | + | chr1_3:7263052-7263071 | None:intergenic | 30.0% | |
| CCACAATTATCATTGTGATA+CGG | - | chr1_3:7263050-7263069 | Msa0100840:intron | 30.0% | |
| TGGATGCATGTGAAAAAAAA+AGG | - | chr1_3:7263645-7263664 | Msa0100840:intron | 30.0% | |
| ! | TGCTAGTAACTTCTAAAAGT+AGG | + | chr1_3:7263916-7263935 | None:intergenic | 30.0% |
| AGTTAAAGGATTCTCCTATT+TGG | - | chr1_3:7264057-7264076 | Msa0100840:intron | 30.0% | |
| ! | TGCAAACATAGAGTATTAGT+AGG | + | chr1_3:7264173-7264192 | None:intergenic | 30.0% |
| ! | TATCCTTGTTTCTTAGACAA+AGG | - | chr1_3:7264629-7264648 | Msa0100840:intron | 30.0% |
| AACTTGCATCTGACATAATT+AGG | + | chr1_3:7264913-7264932 | None:intergenic | 30.0% | |
| AATGTCTGATCTTTATCGAA+CGG | - | chr1_3:7265060-7265079 | Msa0100840:intron | 30.0% | |
| TTGCTGACAGAAAAAATATC+AGG | + | chr1_3:7265112-7265131 | None:intergenic | 30.0% | |
| AAAGCAAAACTTGGTAAATC+GGG | + | chr1_3:7265135-7265154 | None:intergenic | 30.0% | |
| CAAAGCAAAACTTGGTAAAT+CGG | + | chr1_3:7265136-7265155 | None:intergenic | 30.0% | |
| ! | TACTCTTTTCTAACTCTTCA+TGG | + | chr1_3:7265173-7265192 | None:intergenic | 30.0% |
| GATAACTGAGAAAAAGAAGA+CGG | + | chr1_3:7265282-7265301 | None:intergenic | 30.0% | |
| AGTTAATTATACCTCTTGTC+TGG | + | chr1_3:7265428-7265447 | None:intergenic | 30.0% | |
| ! | TTAACTTTTGGTATTATGGC+TGG | - | chr1_3:7265442-7265461 | Msa0100840:intron | 30.0% |
| GCTTAAACTAAATTGCATGT+AGG | + | chr1_3:7265650-7265669 | None:intergenic | 30.0% | |
| !! | TTCGGATATTTTAGATACCT+TGG | + | chr1_3:7265737-7265756 | None:intergenic | 30.0% |
| GCATTTCTATCATTCCAATT+AGG | - | chr1_3:7265915-7265934 | Msa0100840:intron | 30.0% | |
| GATTTGCAAATTAACACCAA+AGG | - | chr1_3:7266295-7266314 | Msa0100840:CDS | 30.0% | |
| AGAGACTAGAAAATGACTTT+AGG | - | chr1_3:7266565-7266584 | Msa0100840:intron | 30.0% | |
| AAGTACAGAAATGAAGTGTG+TGG | + | chr1_3:7261483-7261502 | None:intergenic | 35.0% | |
| ATATTGTGACTGATACAGTG+AGG | - | chr1_3:7261855-7261874 | Msa0100840:intron | 35.0% | |
| TATTGTGACTGATACAGTGA+GGG | - | chr1_3:7261856-7261875 | Msa0100840:intron | 35.0% | |
| AAGAAAATGGTGTGAATGTG+AGG | - | chr1_3:7261894-7261913 | Msa0100840:intron | 35.0% | |
| AGAAAATGGTGTGAATGTGA+GGG | - | chr1_3:7261895-7261914 | Msa0100840:intron | 35.0% | |
| AATGAACAAGCTGTTGTTGT+TGG | - | chr1_3:7261959-7261978 | Msa0100840:CDS | 35.0% | |
| GCACATTTGAACTCAAATCA+TGG | + | chr1_3:7262529-7262548 | None:intergenic | 35.0% | |
| AGTTAATTGTGTTGAGTGGA+TGG | - | chr1_3:7262578-7262597 | Msa0100840:intron | 35.0% | |
| ! | TTTGTTGGTTGAAGTTTGTG+CGG | - | chr1_3:7262630-7262649 | Msa0100840:intron | 35.0% |
| ATGCTACAAGACCACAATTA+AGG | + | chr1_3:7262757-7262776 | None:intergenic | 35.0% | |
| !! | TAATTGTGGTCTTGTAGCAT+TGG | - | chr1_3:7262757-7262776 | Msa0100840:intron | 35.0% |
| !! | GTTGATGGTTAATGATGTTG+GGG | + | chr1_3:7262804-7262823 | None:intergenic | 35.0% |
| TCTTGAATCTGTGTATGAGT+TGG | - | chr1_3:7262957-7262976 | Msa0100840:intron | 35.0% | |
| CCGTATCACAATGATAATTG+TGG | + | chr1_3:7263053-7263072 | None:intergenic | 35.0% | |
| TCCATTACACAGAAGAAAGA+AGG | - | chr1_3:7263268-7263287 | Msa0100840:intron | 35.0% | |
| ACCTTCTTTCTTCTGTGTAA+TGG | + | chr1_3:7263272-7263291 | None:intergenic | 35.0% | |
| !! | ATCATGTTCTGAAGCTACAT+TGG | + | chr1_3:7263311-7263330 | None:intergenic | 35.0% |
| !! | GGACATTGATTCGAAGTTAA+AGG | - | chr1_3:7264043-7264062 | Msa0100840:intron | 35.0% |
| GACAAAAAAGTAGAAGCAGT+TGG | + | chr1_3:7264229-7264248 | None:intergenic | 35.0% | |
| TTAAATCTCTCCAGTGTGAA+AGG | - | chr1_3:7264319-7264338 | Msa0100840:intron | 35.0% | |
| GTTTCCATGTAATTGGCTAA+TGG | + | chr1_3:7264348-7264367 | None:intergenic | 35.0% | |
| CAACATACTAAGAGTCTTCT+TGG | + | chr1_3:7264604-7264623 | None:intergenic | 35.0% | |
| GTTCCTTTGTCTAAGAAACA+AGG | + | chr1_3:7264635-7264654 | None:intergenic | 35.0% | |
| ! | TCGTTTGGTAATCAAACGTT+GGG | + | chr1_3:7264815-7264834 | None:intergenic | 35.0% |
| ! | TTCGTTTGGTAATCAAACGT+TGG | + | chr1_3:7264816-7264835 | None:intergenic | 35.0% |
| AACGTTTGATTACCAAACGA+AGG | - | chr1_3:7264815-7264834 | Msa0100840:CDS | 35.0% | |
| TGACATAATTAGGACCAACT+AGG | + | chr1_3:7264903-7264922 | None:intergenic | 35.0% | |
| TTATGTCAGATGCAAGTTCT+TGG | - | chr1_3:7264915-7264934 | Msa0100840:CDS | 35.0% | |
| AGTTAGTTAATCAGAACCGT+TGG | - | chr1_3:7264977-7264996 | Msa0100840:intron | 35.0% | |
| !! | CGTTGACTCTTGATATTGAT+AGG | - | chr1_3:7265519-7265538 | Msa0100840:intron | 35.0% |
| ! | GGTATTGAAAATGGAGAAAG+AGG | - | chr1_3:7265540-7265559 | Msa0100840:intron | 35.0% |
| CTGAGAAATGTCTTGATTGT+TGG | + | chr1_3:7265598-7265617 | None:intergenic | 35.0% | |
| CAACAATCAAGACATTTCTC+AGG | - | chr1_3:7265596-7265615 | Msa0100840:intron | 35.0% | |
| GCATGAAATCTAATGAGATC+AGG | - | chr1_3:7265781-7265800 | Msa0100840:intron | 35.0% | |
| ! | GAAATGCTCTTTGAAGAAAC+TGG | + | chr1_3:7265902-7265921 | None:intergenic | 35.0% |
| ! | GACTTGACTGTTTTCCTAAT+TGG | + | chr1_3:7265932-7265951 | None:intergenic | 35.0% |
| TTATTTGCAGAATCCAACTC+TGG | - | chr1_3:7266216-7266235 | Msa0100840:intron | 35.0% | |
| TTTGCAAATCCATCAGTTCA+AGG | + | chr1_3:7266285-7266304 | None:intergenic | 35.0% | |
| TCACTAACCTATTCTCTTTG+TGG | - | chr1_3:7266391-7266410 | Msa0100840:intron | 35.0% | |
| GCCCATATAACTAATGCCTT+AGG | - | chr1_3:7262706-7262725 | Msa0100840:CDS | 40.0% | |
| ! | TAATGCCTTAGGATTTTGGG+TGG | - | chr1_3:7262717-7262736 | Msa0100840:intron | 40.0% |
| ATGATGTCTCCTTGCAAGTT+TGG | - | chr1_3:7263326-7263345 | Msa0100840:intron | 40.0% | |
| TTTGGTTGTCCAAACTTGCA+AGG | + | chr1_3:7263338-7263357 | None:intergenic | 40.0% | |
| AAATTCCCTGCTTTCAATGC+AGG | - | chr1_3:7263444-7263463 | Msa0100840:CDS | 40.0% | |
| ACTCTCAACTCTCCAAATAC+AGG | - | chr1_3:7263469-7263488 | Msa0100840:CDS | 40.0% | |
| CACTAGTATTCATGTCAGAG+AGG | - | chr1_3:7264103-7264122 | Msa0100840:intron | 40.0% | |
| CTGCAAGGTTTCCATGTAAT+TGG | + | chr1_3:7264355-7264374 | None:intergenic | 40.0% | |
| AAGCTATCCAGATGAGCTTA+TGG | - | chr1_3:7264496-7264515 | Msa0100840:intron | 40.0% | |
| GATCAATGAGATTCACAGCA+AGG | + | chr1_3:7264783-7264802 | None:intergenic | 40.0% | |
| TGGTAATCAAACGTTGGGAA+AGG | + | chr1_3:7264810-7264829 | None:intergenic | 40.0% | |
| CAGATGCAAGTTCTTGGAAA+TGG | - | chr1_3:7264921-7264940 | Msa0100840:CDS | 40.0% | |
| ATTCACTGCAGTCAGTAAGT+TGG | + | chr1_3:7265088-7265107 | None:intergenic | 40.0% | |
| TATGAAGAGATTTGTGCTCC+TGG | - | chr1_3:7265364-7265383 | Msa0100840:intron | 40.0% | |
| ATGAAGAGATTTGTGCTCCT+GGG | - | chr1_3:7265365-7265384 | Msa0100840:intron | 40.0% | |
| TAACACATACTCCAGACAAG+AGG | - | chr1_3:7265414-7265433 | Msa0100840:intron | 40.0% | |
| AACCATCTTCTTTGCCTTTC+AGG | - | chr1_3:7265683-7265702 | Msa0100840:intron | 40.0% | |
| ! | TGGAAGAAGTTTGTGCTACT+TGG | + | chr1_3:7265717-7265736 | None:intergenic | 40.0% |
| AGTAGCACAAACTTCTTCCA+AGG | - | chr1_3:7265717-7265736 | Msa0100840:intron | 40.0% | |
| !!! | TCATGCTTATTTTGACCGCA+GGG | + | chr1_3:7265767-7265786 | None:intergenic | 40.0% |
| !!! | TTCATGCTTATTTTGACCGC+AGG | + | chr1_3:7265768-7265787 | None:intergenic | 40.0% |
| AGTTAATGTTCACAGACCCA+TGG | + | chr1_3:7266126-7266145 | None:intergenic | 40.0% | |
| TTTGTATAGTGCTCCAGAGT+TGG | + | chr1_3:7266232-7266251 | None:intergenic | 40.0% | |
| AACTACTGTCCTTGAACTGA+TGG | - | chr1_3:7266273-7266292 | Msa0100840:CDS | 40.0% | |
| CCACACTATTGAACTGTCAT+AGG | + | chr1_3:7266490-7266509 | None:intergenic | 40.0% | |
| CCTATGACAGTTCAATAGTG+TGG | - | chr1_3:7266487-7266506 | Msa0100840:intron | 40.0% | |
| !! | AAAAGAGATTCCACCGGTTT+CGG | + | chr1_3:7266524-7266543 | None:intergenic | 40.0% |
| TCCTAGAAAAGAGATTCCAC+CGG | + | chr1_3:7266530-7266549 | None:intergenic | 40.0% | |
| ! | ATTCCGTACTTGTGACTTGT+AGG | - | chr1_3:7266683-7266702 | Msa0100840:intron | 40.0% |
| CATCCTACAAGTCACAAGTA+CGG | + | chr1_3:7266689-7266708 | None:intergenic | 40.0% | |
| TACAGTGAGGGAGAGCAAAA+TGG | - | chr1_3:7261868-7261887 | Msa0100840:intron | 45.0% | |
| ! | AGCAAGGGCTAAAGCTTTGA+AGG | - | chr1_3:7261925-7261944 | Msa0100840:CDS | 45.0% |
| CATCTCCACCCAAAATCCTA+AGG | + | chr1_3:7262725-7262744 | None:intergenic | 45.0% | |
| !! | TAGGATTTTGGGTGGAGATG+CGG | - | chr1_3:7262725-7262744 | Msa0100840:intron | 45.0% |
| TGCGGTGTCTACCTTAATTG+TGG | - | chr1_3:7262743-7262762 | Msa0100840:intron | 45.0% | |
| TTAATGATGTTGGGGAGTCG+GGG | + | chr1_3:7262796-7262815 | None:intergenic | 45.0% | |
| GTTAATGATGTTGGGGAGTC+GGG | + | chr1_3:7262797-7262816 | None:intergenic | 45.0% | |
| GGTTAATGATGTTGGGGAGT+CGG | + | chr1_3:7262798-7262817 | None:intergenic | 45.0% | |
| !! | GTGTATGAGTTGGTCAGAAC+AGG | - | chr1_3:7262967-7262986 | Msa0100840:intron | 45.0% |
| CTGCAACTGCATCGCAATTT+AGG | + | chr1_3:7262993-7263012 | None:intergenic | 45.0% | |
| GCAAGTTTGGACAACCAAAG+AGG | - | chr1_3:7263339-7263358 | Msa0100840:intron | 45.0% | |
| GACAACCAAAGAGGATGCAA+AGG | - | chr1_3:7263348-7263367 | Msa0100840:intron | 45.0% | |
| ! | AGCAGGGAATTTTCCACAGA+AGG | + | chr1_3:7263436-7263455 | None:intergenic | 45.0% |
| AGTGTCCTGCATTGAAAGCA+GGG | + | chr1_3:7263452-7263471 | None:intergenic | 45.0% | |
| GAGAAACTAAGTGCCTCAGT+TGG | - | chr1_3:7264008-7264027 | Msa0100840:intron | 45.0% | |
| GGGGCATAAGAAGTCCAAAT+AGG | + | chr1_3:7264074-7264093 | None:intergenic | 45.0% | |
| AATCTCTCCAGTGTGAAAGG+AGG | - | chr1_3:7264322-7264341 | Msa0100840:intron | 45.0% | |
| GAGGCCATTAGCCAATTACA+TGG | - | chr1_3:7264341-7264360 | Msa0100840:intron | 45.0% | |
| ACAGCAAGGTAAAGTGTGTC+TGG | + | chr1_3:7264769-7264788 | None:intergenic | 45.0% | |
| GAGCTGTCTAACTCATCCAA+CGG | + | chr1_3:7264996-7265015 | None:intergenic | 45.0% | |
| TGAAGAGATTTGTGCTCCTG+GGG | - | chr1_3:7265366-7265385 | Msa0100840:intron | 45.0% | |
| CTCCTGAAAGGCAAAGAAGA+TGG | + | chr1_3:7265688-7265707 | None:intergenic | 45.0% | |
| CATCTTCTTTGCCTTTCAGG+AGG | - | chr1_3:7265686-7265705 | Msa0100840:intron | 45.0% | |
| ACTTGGATGAACCTCCTGAA+AGG | + | chr1_3:7265700-7265719 | None:intergenic | 45.0% | |
| !!! | TATTTTGACCGCAGGGAATC+TGG | + | chr1_3:7265760-7265779 | None:intergenic | 45.0% |
| TCTAATGAGATCAGGACCGA+TGG | - | chr1_3:7265789-7265808 | Msa0100840:intron | 45.0% | |
| ! | TCAAGCTGATCTGGAATTCC+TGG | - | chr1_3:7265984-7266003 | Msa0100840:intron | 45.0% |
| ! | GCTCTGCTAAATAGTTTGCC+AGG | + | chr1_3:7266005-7266024 | None:intergenic | 45.0% |
| !! | CTGCTGTGTTACTTGCAAGA+TGG | - | chr1_3:7266079-7266098 | Msa0100840:intron | 45.0% |
| TGCATTGAGACGACAACCTT+TGG | + | chr1_3:7266314-7266333 | None:intergenic | 45.0% | |
| ! | ACCGGTGGAATCTCTTTTCT+AGG | - | chr1_3:7266526-7266545 | Msa0100840:intron | 45.0% |
| AGTACGGAATAGCCCGTAAT+TGG | + | chr1_3:7266673-7266692 | None:intergenic | 45.0% | |
| ! | CGTACTTGTGACTTGTAGGA+TGG | - | chr1_3:7266687-7266706 | Msa0100840:intron | 45.0% |
| !! | AGTAGATCAAGAAGCACCAG+AGG | + | chr1_3:7266719-7266738 | None:intergenic | 45.0% |
| TAATGATGTTGGGGAGTCGG+GGG | + | chr1_3:7262795-7262814 | None:intergenic | 50.0% | |
| CTCTGCCTTTGCATCCTCTT+TGG | + | chr1_3:7263356-7263375 | None:intergenic | 50.0% | |
| GAGTGTCCTGCATTGAAAGC+AGG | + | chr1_3:7263453-7263472 | None:intergenic | 50.0% | |
| ACTAAGTGCCTCAGTTGGCT+TGG | - | chr1_3:7264013-7264032 | Msa0100840:intron | 50.0% | |
| ! | CTAAGTGCCTCAGTTGGCTT+GGG | - | chr1_3:7264014-7264033 | Msa0100840:intron | 50.0% |
| CACAATTCCCAAGCCAACTG+AGG | + | chr1_3:7264024-7264043 | None:intergenic | 50.0% | |
| !! | CTCAGTTGGCTTGGGAATTG+TGG | - | chr1_3:7264022-7264041 | Msa0100840:intron | 50.0% |
| CTAATGGCCTCCTTTCACAC+TGG | + | chr1_3:7264332-7264351 | None:intergenic | 50.0% | |
| TTGCAGCAAGACATCACTCC+CGG | - | chr1_3:7264369-7264388 | Msa0100840:intron | 50.0% | |
| !! | GATTCTGGTTGACTGGCTTG+TGG | - | chr1_3:7264401-7264420 | Msa0100840:intron | 50.0% |
| GACGTGTCCATAAGCTCATC+TGG | + | chr1_3:7264506-7264525 | None:intergenic | 50.0% | |
| AAGCAACTGCAGCCTTCGTT+TGG | + | chr1_3:7264830-7264849 | None:intergenic | 50.0% | |
| AAACGAAGGCTGCAGTTGCT+TGG | - | chr1_3:7264829-7264848 | Msa0100840:CDS | 50.0% | |
| ACGCAAAAGTCTTCAACCCC+AGG | + | chr1_3:7265385-7265404 | None:intergenic | 50.0% | |
| TATCCGAACCAGATTCCCTG+CGG | - | chr1_3:7265749-7265768 | Msa0100840:intron | 50.0% | |
| TCAGGACCGATGGATCAAGA+CGG | - | chr1_3:7265799-7265818 | Msa0100840:intron | 50.0% | |
| TGTGAGCCGTCTTGATCCAT+CGG | + | chr1_3:7265808-7265827 | None:intergenic | 50.0% | |
| ! | TCAGGTTGCTCAAGCTGATC+TGG | - | chr1_3:7265975-7265994 | Msa0100840:intron | 50.0% |
| GCAGATGCAGCTATCTTGGA+AGG | + | chr1_3:7266063-7266082 | None:intergenic | 50.0% | |
| CACAGCAGATGCAGCTATCT+TGG | + | chr1_3:7266067-7266086 | None:intergenic | 50.0% | |
| ! | TGGATGCTCTGACTGGTTGA+GGG | + | chr1_3:7266106-7266125 | None:intergenic | 50.0% |
| ! | ATGGATGCTCTGACTGGTTG+AGG | + | chr1_3:7266107-7266126 | None:intergenic | 50.0% |
| ! | TCAACCAGTCAGAGCATCCA+TGG | - | chr1_3:7266106-7266125 | Msa0100840:intron | 50.0% |
| ! | CAACCAGTCAGAGCATCCAT+GGG | - | chr1_3:7266107-7266126 | Msa0100840:intron | 50.0% |
| GGCGAATTTGTCTCCGAAAC+CGG | - | chr1_3:7266508-7266527 | Msa0100840:intron | 50.0% | |
| GAATTTGTCTCCGAAACCGG+TGG | - | chr1_3:7266511-7266530 | Msa0100840:intron | 50.0% | |
| TGTAGGATGGTACCAACCTC+TGG | - | chr1_3:7266700-7266719 | Msa0100840:five_prime_UTR | 50.0% | |
| !! | GATCAAGAAGCACCAGAGGT+TGG | + | chr1_3:7266715-7266734 | None:intergenic | 50.0% |
| ATGTGAGGGTGACTCGAGCA+AGG | - | chr1_3:7261909-7261928 | Msa0100840:intron | 55.0% | |
| TGTGAGGGTGACTCGAGCAA+GGG | - | chr1_3:7261910-7261929 | Msa0100840:CDS | 55.0% | |
| CACAGAAGGCTGCACTTGCA+GGG | + | chr1_3:7263422-7263441 | None:intergenic | 55.0% | |
| GGGAGTGATGTCTTGCTGCA+AGG | + | chr1_3:7264370-7264389 | None:intergenic | 55.0% | |
| AAGACATCACTCCCGGCATG+AGG | - | chr1_3:7264376-7264395 | Msa0100840:intron | 55.0% | |
| AGACATCACTCCCGGCATGA+GGG | - | chr1_3:7264377-7264396 | Msa0100840:intron | 55.0% | |
| AACCAGAATCCCCCTCATGC+CGG | + | chr1_3:7264391-7264410 | None:intergenic | 55.0% | |
| ! | TGAGGGGGATTCTGGTTGAC+TGG | - | chr1_3:7264394-7264413 | Msa0100840:intron | 55.0% |
| !! | TCTGGTTGACTGGCTTGTGG+AGG | - | chr1_3:7264404-7264423 | Msa0100840:intron | 55.0% |
| TGACCGCAGGGAATCTGGTT+CGG | + | chr1_3:7265755-7265774 | None:intergenic | 55.0% | |
| AGACCCATGGATGCTCTGAC+TGG | + | chr1_3:7266113-7266132 | None:intergenic | 55.0% | |
| CCACAGAAGGCTGCACTTGC+AGG | + | chr1_3:7263423-7263442 | None:intergenic | 60.0% | |
| CCTGCAAGTGCAGCCTTCTG+TGG | - | chr1_3:7263420-7263439 | Msa0100840:CDS | 60.0% | |
| GACATCACTCCCGGCATGAG+GGG | - | chr1_3:7264378-7264397 | Msa0100840:intron | 60.0% | |
| ACATCACTCCCGGCATGAGG+GGG | - | chr1_3:7264379-7264398 | Msa0100840:intron | 60.0% | |
| ACCAGAATCCCCCTCATGCC+GGG | + | chr1_3:7264390-7264409 | None:intergenic | 60.0% | |
| GGTCTGCGCAGCTGCAATCG+CGG | + | chr1_3:7263108-7263127 | None:intergenic | 65.0% | |
| TCCCGGCATGAGGGGGATTC+TGG | - | chr1_3:7264386-7264405 | Msa0100840:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 7261419 | 7266851 | 7261419 | ID=Msa0100840;Name=Msa0100840 |
| chr1_3 | mRNA | 7261419 | 7266851 | 7261419 | ID=Msa0100840-mRNA-1;Parent=Msa0100840;Name=Msa0100840-mRNA-1;_AED=0.13;_eAED=0.13;_QI=162|1|1|1|0.90|0.83|12|304|423 |
| chr1_3 | exon | 7261419 | 7261773 | 7261419 | ID=Msa0100840-mRNA-1:exon:2850;Parent=Msa0100840-mRNA-1 |
| chr1_3 | exon | 7261910 | 7262044 | 7261910 | ID=Msa0100840-mRNA-1:exon:2849;Parent=Msa0100840-mRNA-1 |
| chr1_3 | exon | 7262142 | 7262291 | 7262142 | ID=Msa0100840-mRNA-1:exon:2848;Parent=Msa0100840-mRNA-1 |
| chr1_3 | exon | 7262532 | 7262565 | 7262532 | ID=Msa0100840-mRNA-1:exon:2847;Parent=Msa0100840-mRNA-1 |
| chr1_3 | exon | 7262653 | 7262729 | 7262653 | ID=Msa0100840-mRNA-1:exon:2846;Parent=Msa0100840-mRNA-1 |
| chr1_3 | exon | 7262835 | 7262910 | 7262835 | ID=Msa0100840-mRNA-1:exon:2845;Parent=Msa0100840-mRNA-1 |
| chr1_3 | exon | 7263395 | 7263528 | 7263395 | ID=Msa0100840-mRNA-1:exon:2844;Parent=Msa0100840-mRNA-1 |
| chr1_3 | exon | 7263845 | 7263937 | 7263845 | ID=Msa0100840-mRNA-1:exon:2843;Parent=Msa0100840-mRNA-1 |
| chr1_3 | exon | 7264146 | 7264279 | 7264146 | ID=Msa0100840-mRNA-1:exon:2842;Parent=Msa0100840-mRNA-1 |
| chr1_3 | exon | 7264780 | 7264990 | 7264780 | ID=Msa0100840-mRNA-1:exon:2841;Parent=Msa0100840-mRNA-1 |
| chr1_3 | exon | 7266222 | 7266397 | 7266222 | ID=Msa0100840-mRNA-1:exon:2840;Parent=Msa0100840-mRNA-1 |
| chr1_3 | exon | 7266689 | 7266851 | 7266689 | ID=Msa0100840-mRNA-1:exon:2839;Parent=Msa0100840-mRNA-1 |
| chr1_3 | five_prime_UTR | 7266690 | 7266851 | 7266690 | ID=Msa0100840-mRNA-1:five_prime_utr;Parent=Msa0100840-mRNA-1 |
| chr1_3 | CDS | 7266689 | 7266689 | 7266689 | ID=Msa0100840-mRNA-1:cds;Parent=Msa0100840-mRNA-1 |
| chr1_3 | CDS | 7266222 | 7266397 | 7266222 | ID=Msa0100840-mRNA-1:cds;Parent=Msa0100840-mRNA-1 |
| chr1_3 | CDS | 7264780 | 7264990 | 7264780 | ID=Msa0100840-mRNA-1:cds;Parent=Msa0100840-mRNA-1 |
| chr1_3 | CDS | 7264146 | 7264279 | 7264146 | ID=Msa0100840-mRNA-1:cds;Parent=Msa0100840-mRNA-1 |
| chr1_3 | CDS | 7263845 | 7263937 | 7263845 | ID=Msa0100840-mRNA-1:cds;Parent=Msa0100840-mRNA-1 |
| chr1_3 | CDS | 7263395 | 7263528 | 7263395 | ID=Msa0100840-mRNA-1:cds;Parent=Msa0100840-mRNA-1 |
| chr1_3 | CDS | 7262835 | 7262910 | 7262835 | ID=Msa0100840-mRNA-1:cds;Parent=Msa0100840-mRNA-1 |
| chr1_3 | CDS | 7262653 | 7262729 | 7262653 | ID=Msa0100840-mRNA-1:cds;Parent=Msa0100840-mRNA-1 |
| chr1_3 | CDS | 7262532 | 7262565 | 7262532 | ID=Msa0100840-mRNA-1:cds;Parent=Msa0100840-mRNA-1 |
| chr1_3 | CDS | 7262142 | 7262291 | 7262142 | ID=Msa0100840-mRNA-1:cds;Parent=Msa0100840-mRNA-1 |
| chr1_3 | CDS | 7261910 | 7262044 | 7261910 | ID=Msa0100840-mRNA-1:cds;Parent=Msa0100840-mRNA-1 |
| chr1_3 | CDS | 7261723 | 7261773 | 7261723 | ID=Msa0100840-mRNA-1:cds;Parent=Msa0100840-mRNA-1 |
| chr1_3 | three_prime_UTR | 7261419 | 7261722 | 7261419 | ID=Msa0100840-mRNA-1:three_prime_utr;Parent=Msa0100840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
