Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118810 | sp|Q8LGG8|USPAL_ARATH | 30.851 | 94 | 65 | 0 | 95 | 188 | 69 | 162 | 1.70e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118810 | A0A072VK27 | 94.915 | 177 | 9 | 0 | 21 | 197 | 1 | 177 | 3.07e-124 | 357 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015930 | Msa0118810 | 0.827006 | 1.984822e-54 | -8.615850e-47 |
| Msa0020390 | Msa0118810 | 0.800192 | 1.617032e-48 | -8.615850e-47 |
| Msa0023000 | Msa0118810 | 0.823116 | 1.647128e-53 | -8.615850e-47 |
| Msa0023010 | Msa0118810 | 0.820073 | 8.315613e-53 | -8.615850e-47 |
| Msa0023040 | Msa0118810 | 0.838702 | 2.457326e-57 | -8.615850e-47 |
| Msa0023050 | Msa0118810 | 0.824913 | 6.236836e-54 | -8.615850e-47 |
| Msa0070880 | Msa0118810 | 0.801731 | 7.840596e-49 | -8.615850e-47 |
| Msa0118780 | Msa0118810 | 0.826290 | 2.941562e-54 | -8.615850e-47 |
| Msa0118790 | Msa0118810 | 0.839411 | 1.610288e-57 | -8.615850e-47 |
| Msa0118810 | Msa0156370 | 0.834796 | 2.436296e-56 | -8.615850e-47 |
| Msa0118810 | Msa0162100 | 0.825682 | 4.103537e-54 | -8.615850e-47 |
| Msa0118810 | Msa0162120 | 0.847903 | 8.613272e-60 | -8.615850e-47 |
| Msa0118810 | Msa0162130 | 0.900986 | 4.228797e-78 | -8.615850e-47 |
| Msa0118810 | Msa0534900 | 0.811269 | 7.616817e-51 | -8.615850e-47 |
| Msa0118810 | Msa0550120 | 0.812344 | 4.445052e-51 | -8.615850e-47 |
| Msa0118810 | Msa0588260 | 0.825924 | 3.595669e-54 | -8.615850e-47 |
| Msa0118810 | Msa0605650 | 0.819800 | 9.604141e-53 | -8.615850e-47 |
| Msa0118810 | Msa0631350 | 0.803502 | 3.381555e-49 | -8.615850e-47 |
| Msa0118810 | Msa0784860 | 0.819148 | 1.352311e-52 | -8.615850e-47 |
| Msa0118810 | Msa0817730 | 0.806839 | 6.768376e-50 | -8.615850e-47 |
| Msa0118810 | Msa0818750 | 0.832395 | 9.688362e-56 | -8.615850e-47 |
| Msa0118810 | Msa0844220 | -0.802999 | 4.297769e-49 | -8.615850e-47 |
| Msa0118810 | Msa0858180 | 0.809177 | 2.152387e-50 | -8.615850e-47 |
| Msa0118810 | Msa1107160 | 0.803545 | 3.311819e-49 | -8.615850e-47 |
| Msa0118810 | Msa1296830 | 0.810243 | 1.270137e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118810 | MtrunA17_Chr1g0176321 | 94.915 | 177 | 9 | 0 | 21 | 197 | 1 | 177 | 5.91e-128 | 357 |
| Msa0118810 | MtrunA17_Chr1g0176311 | 80.203 | 197 | 32 | 5 | 1 | 197 | 1 | 190 | 2.64e-110 | 313 |
| Msa0118810 | MtrunA17_Chr1g0192651 | 38.547 | 179 | 87 | 4 | 13 | 191 | 3 | 158 | 1.41e-34 | 120 |
| Msa0118810 | MtrunA17_Chr1g0195661 | 38.251 | 183 | 95 | 4 | 13 | 194 | 2 | 167 | 1.12e-33 | 117 |
| Msa0118810 | MtrunA17_Chr1g0194801 | 37.853 | 177 | 87 | 6 | 17 | 190 | 2 | 158 | 4.90e-32 | 113 |
| Msa0118810 | MtrunA17_Chr5g0427291 | 36.628 | 172 | 90 | 7 | 25 | 188 | 10 | 170 | 9.99e-29 | 105 |
| Msa0118810 | MtrunA17_Chr7g0269301 | 35.057 | 174 | 94 | 4 | 22 | 194 | 7 | 162 | 9.93e-24 | 92.4 |
| Msa0118810 | MtrunA17_Chr4g0032261 | 32.530 | 166 | 97 | 3 | 24 | 188 | 6 | 157 | 1.78e-19 | 81.3 |
| Msa0118810 | MtrunA17_Chr2g0323291 | 29.609 | 179 | 101 | 4 | 24 | 194 | 26 | 187 | 6.55e-19 | 81.3 |
| Msa0118810 | MtrunA17_Chr4g0001641 | 47.541 | 61 | 32 | 0 | 128 | 188 | 5 | 65 | 7.63e-18 | 74.3 |
| Msa0118810 | MtrunA17_Chr5g0433951 | 29.688 | 192 | 84 | 7 | 25 | 197 | 7 | 166 | 6.14e-17 | 74.7 |
| Msa0118810 | MtrunA17_Chr2g0294421 | 31.034 | 174 | 101 | 4 | 24 | 194 | 6 | 163 | 1.21e-16 | 73.6 |
| Msa0118810 | MtrunA17_Chr4g0008801 | 30.723 | 166 | 94 | 4 | 27 | 188 | 9 | 157 | 2.42e-15 | 70.5 |
| Msa0118810 | MtrunA17_Chr6g0450171 | 31.034 | 87 | 60 | 0 | 102 | 188 | 76 | 162 | 4.23e-15 | 70.1 |
| Msa0118810 | MtrunA17_Chr7g0240701 | 28.743 | 167 | 102 | 4 | 24 | 188 | 6 | 157 | 1.21e-13 | 65.9 |
| Msa0118810 | MtrunA17_Chr8g0361111 | 28.655 | 171 | 93 | 8 | 22 | 175 | 41 | 199 | 3.39e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118810 | AT3G11930.1 | 56.395 | 172 | 69 | 3 | 24 | 195 | 34 | 199 | 2.01e-67 | 205 |
| Msa0118810 | AT3G11930.2 | 55.233 | 172 | 72 | 2 | 24 | 195 | 34 | 200 | 1.22e-66 | 203 |
| Msa0118810 | AT3G11930.4 | 56.322 | 174 | 68 | 4 | 24 | 195 | 34 | 201 | 3.55e-66 | 202 |
| Msa0118810 | AT3G11930.3 | 47.980 | 198 | 72 | 3 | 24 | 195 | 34 | 226 | 1.88e-60 | 188 |
| Msa0118810 | AT3G58450.1 | 51.786 | 168 | 74 | 3 | 25 | 192 | 32 | 192 | 1.33e-54 | 172 |
| Msa0118810 | AT3G58450.2 | 50.595 | 168 | 69 | 3 | 25 | 192 | 32 | 185 | 7.08e-53 | 168 |
| Msa0118810 | AT1G09740.2 | 36.416 | 173 | 91 | 4 | 25 | 192 | 10 | 168 | 3.21e-31 | 112 |
| Msa0118810 | AT1G09740.1 | 36.416 | 173 | 91 | 4 | 25 | 192 | 10 | 168 | 3.21e-31 | 112 |
| Msa0118810 | AT2G47710.1 | 34.503 | 171 | 93 | 4 | 22 | 191 | 7 | 159 | 3.10e-29 | 106 |
| Msa0118810 | AT3G62550.1 | 35.928 | 167 | 87 | 4 | 24 | 188 | 8 | 156 | 5.66e-29 | 106 |
| Msa0118810 | AT1G68300.1 | 33.714 | 175 | 96 | 3 | 15 | 188 | 2 | 157 | 8.51e-26 | 97.8 |
| Msa0118810 | AT3G01520.1 | 30.851 | 94 | 65 | 0 | 95 | 188 | 69 | 162 | 1.73e-16 | 73.9 |
| Msa0118810 | AT3G03270.2 | 31.148 | 183 | 75 | 5 | 25 | 188 | 7 | 157 | 2.26e-16 | 73.2 |
| Msa0118810 | AT5G14680.1 | 30.851 | 94 | 65 | 0 | 95 | 188 | 69 | 162 | 6.81e-16 | 72.4 |
| Msa0118810 | AT1G11360.2 | 28.090 | 178 | 104 | 5 | 22 | 192 | 37 | 197 | 4.01e-15 | 71.6 |
| Msa0118810 | AT1G11360.1 | 28.090 | 178 | 104 | 5 | 22 | 192 | 37 | 197 | 4.01e-15 | 71.6 |
| Msa0118810 | AT1G11360.4 | 28.090 | 178 | 104 | 5 | 22 | 192 | 37 | 197 | 4.01e-15 | 71.6 |
| Msa0118810 | AT1G11360.3 | 28.090 | 178 | 104 | 5 | 22 | 192 | 37 | 197 | 4.01e-15 | 71.6 |
| Msa0118810 | AT3G17020.1 | 30.508 | 177 | 87 | 6 | 24 | 188 | 8 | 160 | 7.48e-15 | 69.3 |
| Msa0118810 | AT3G53990.1 | 29.070 | 172 | 95 | 6 | 27 | 191 | 9 | 160 | 1.37e-13 | 65.9 |
Find 58 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTATGGCTACTGATACTA+TGG | 0.183037 | 1_3:-42004732 | Msa0118810:CDS |
| GCAGAAAGTGTGATTCTTAA+TGG | 0.228368 | 1_3:-42002798 | Msa0118810:CDS |
| TATGCATAAGTGTGGAAATT+TGG | 0.264690 | 1_3:+42004656 | None:intergenic |
| TTCAAAGAATCTGCAACTTC+AGG | 0.297788 | 1_3:+42004216 | None:intergenic |
| TATTTCTAATTGAATAATCT+TGG | 0.297973 | 1_3:-42002382 | Msa0118810:three_prime_UTR |
| CCAGCTGGTCCCATAGGTAT+AGG | 0.340250 | 1_3:+42004632 | None:intergenic |
| CTTCTGCACCTCCCCTCACT+TGG | 0.373335 | 1_3:+42004849 | None:intergenic |
| TGATAACCTCTTCAACGTTA+TGG | 0.381044 | 1_3:-42004747 | Msa0118810:CDS |
| GCAAGTTGATCTCTTAATCA+TGG | 0.412365 | 1_3:-42002736 | Msa0118810:CDS |
| GGATAAGTCTGGAATAATCT+TGG | 0.424685 | 1_3:-42002432 | Msa0118810:three_prime_UTR |
| CAGCTGGTCCCATAGGTATA+GGG | 0.428625 | 1_3:+42004633 | None:intergenic |
| TCTGCAACTTCAGGTGTTGA+TGG | 0.429179 | 1_3:+42004225 | None:intergenic |
| ATTTCTAATTGAATAATCTT+GGG | 0.429529 | 1_3:-42002381 | Msa0118810:three_prime_UTR |
| ATCATGGGTAGTCGTGGCCT+TGG | 0.451807 | 1_3:-42002720 | Msa0118810:CDS |
| CCTATGGGACCAGCTGGTAT+TGG | 0.470932 | 1_3:-42004626 | Msa0118810:intron |
| TTCTATGGGATGGATAAGTC+TGG | 0.472628 | 1_3:-42002443 | Msa0118810:three_prime_UTR |
| CAAACGGATCCTTAAAGAAA+AGG | 0.472694 | 1_3:+42002338 | None:intergenic |
| TTATGCATACCCTATACCTA+TGG | 0.478213 | 1_3:-42004642 | Msa0118810:CDS |
| ATCTGCAGCTATTGCCTCAC+GGG | 0.482712 | 1_3:-42004175 | Msa0118810:CDS |
| TGCAAGAGAAATGATTTGTC+AGG | 0.490363 | 1_3:-42002772 | Msa0118810:CDS |
| GAAGCTTGTATGCTCTTAAG+TGG | 0.498753 | 1_3:-42004775 | Msa0118810:CDS |
| GTGGCCTTGGCAAACTCAAA+AGG | 0.501962 | 1_3:-42002707 | Msa0118810:intron |
| GGTGGCTTCACAATGAGAAT+AGG | 0.504003 | 1_3:+42002519 | None:intergenic |
| TTTGGTGGCAGAGCATTCCT+TGG | 0.514690 | 1_3:-42002579 | Msa0118810:intron |
| CCAATACCAGCTGGTCCCAT+AGG | 0.522576 | 1_3:+42004626 | None:intergenic |
| AAAGAGAAGGATGAAGATGA+AGG | 0.523647 | 1_3:-42004825 | Msa0118810:CDS |
| TAACGTTGAAGAGGTTATCA+AGG | 0.523668 | 1_3:+42004750 | None:intergenic |
| ATCTGAAAATGAGGAGGGGA+TGG | 0.523730 | 1_3:-42004699 | Msa0118810:CDS |
| AAAAGGGTGATGGAGGAAGT+AGG | 0.524919 | 1_3:-42004884 | None:intergenic |
| GCAAATGTGCAAGGACAAGC+AGG | 0.531005 | 1_3:-42004148 | Msa0118810:intron |
| CTCTTAATCATGGGTAGTCG+TGG | 0.541714 | 1_3:-42002726 | Msa0118810:CDS |
| AATAGTCACTTACACTTCCA+AGG | 0.548894 | 1_3:+42002562 | None:intergenic |
| TGGAACAACATCTGAAAATG+AGG | 0.557443 | 1_3:-42004708 | Msa0118810:CDS |
| ATGGCTACTGATACTATGGA+TGG | 0.557940 | 1_3:-42004728 | Msa0118810:CDS |
| CAAGTTGATCTCTTAATCAT+GGG | 0.558572 | 1_3:-42002735 | Msa0118810:CDS |
| CAGTAGCCATAACGTTGAAG+AGG | 0.571035 | 1_3:+42004741 | None:intergenic |
| CCTATACCTATGGGACCAGC+TGG | 0.573743 | 1_3:-42004632 | Msa0118810:CDS |
| GTGGAAGTGTTGACCAAGTG+AGG | 0.578339 | 1_3:-42004862 | Msa0118810:CDS |
| TGGAAGTGTTGACCAAGTGA+GGG | 0.581251 | 1_3:-42004861 | Msa0118810:CDS |
| GAGGTGCAGAAGAAAAGAGA+AGG | 0.584561 | 1_3:-42004838 | Msa0118810:CDS |
| TATGCATACCCTATACCTAT+GGG | 0.588273 | 1_3:-42004641 | Msa0118810:CDS |
| AATCTGCAGCTATTGCCTCA+CGG | 0.590946 | 1_3:-42004176 | Msa0118810:CDS |
| GTATAGGGTATGCATAAGTG+TGG | 0.596401 | 1_3:+42004648 | None:intergenic |
| ACGGGCTTTGCAAATGTGCA+AGG | 0.602324 | 1_3:-42004157 | Msa0118810:CDS |
| GATGAAGATGAAGGTGATGG+TGG | 0.605709 | 1_3:-42004816 | Msa0118810:CDS |
| ATATACTAACCAATACCAGC+TGG | 0.608648 | 1_3:+42004617 | None:intergenic |
| ACAACATCTGAAAATGAGGA+GGG | 0.619877 | 1_3:-42004704 | Msa0118810:CDS |
| AACAACATCTGAAAATGAGG+AGG | 0.624375 | 1_3:-42004705 | Msa0118810:CDS |
| AACGTTGAAGAGGTTATCAA+GGG | 0.625008 | 1_3:+42004751 | None:intergenic |
| AGGGTGATGGAGGAAGTAGG+TGG | 0.640246 | 1_3:-42004881 | None:intergenic |
| AAGGATGAAGATGAAGGTGA+TGG | 0.645453 | 1_3:-42004819 | Msa0118810:CDS |
| AAGCTTGTATGCTCTTAAGT+GGG | 0.653871 | 1_3:-42004774 | Msa0118810:CDS |
| GTGGCAATAGATGAGAGTGA+TGG | 0.658459 | 1_3:-42004797 | Msa0118810:CDS |
| CAACATCTGAAAATGAGGAG+GGG | 0.662503 | 1_3:-42004703 | Msa0118810:CDS |
| GCACATTTGCAAAGCCCGTG+AGG | 0.665936 | 1_3:+42004161 | None:intergenic |
| GGAAGTGTTGACCAAGTGAG+GGG | 0.668841 | 1_3:-42004860 | Msa0118810:CDS |
| TCTCATTGTGAAGCCACCAG+AGG | 0.677993 | 1_3:-42002514 | Msa0118810:CDS |
| AGTGTTGACCAAGTGAGGGG+AGG | 0.708592 | 1_3:-42004857 | Msa0118810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTAACTATTTTTTTTTTAT+TGG | - | chr1_3:42003774-42003793 | Msa0118810:intron | 10.0% |
| !!! | TCTAGTTTTTAATAGATAAA+AGG | + | chr1_3:42002669-42002688 | None:intergenic | 15.0% |
| !!! | TTGTATTTATTTTAGTATAG+AGG | + | chr1_3:42003342-42003361 | None:intergenic | 15.0% |
| !! | AATAGGATAAATTAAATGAA+GGG | + | chr1_3:42003369-42003388 | None:intergenic | 15.0% |
| !! | AAATAATGACATTAATGAAT+AGG | + | chr1_3:42003386-42003405 | None:intergenic | 15.0% |
| !!! | TCTCATGATTTTTTTTTTTT+AGG | - | chr1_3:42003586-42003605 | Msa0118810:intron | 15.0% |
| !!! | CTCATGATTTTTTTTTTTTA+GGG | - | chr1_3:42003587-42003606 | Msa0118810:intron | 15.0% |
| !!! | AACTAAAATATTTTCTTTGA+CGG | - | chr1_3:42003929-42003948 | Msa0118810:intron | 15.0% |
| !!! | GATCTTTTTTTTTTTTTTTG+AGG | - | chr1_3:42004015-42004034 | Msa0118810:intron | 15.0% |
| !!! | CTAGATTTTTTTTTTTTTGA+AGG | + | chr1_3:42004285-42004304 | None:intergenic | 15.0% |
| !!! | TAAATTATGGCTTTTAAATT+TGG | - | chr1_3:42004338-42004357 | Msa0118810:intron | 15.0% |
| !!! | GTTCTAATATTTTTTACATT+TGG | - | chr1_3:42004629-42004648 | Msa0118810:CDS | 15.0% |
| !!! | TATTTCTAATTGAATAATCT+TGG | - | chr1_3:42004844-42004863 | Msa0118810:CDS | 15.0% |
| !! | ATTTCTAATTGAATAATCTT+GGG | - | chr1_3:42004845-42004864 | Msa0118810:CDS | 15.0% |
| !! | TCTATTAAAAACTAGAACAA+TGG | - | chr1_3:42002673-42002692 | Msa0118810:intron | 20.0% |
| !! | AAAAATGATGTAACTTTGTA+AGG | - | chr1_3:42002772-42002791 | Msa0118810:CDS | 20.0% |
| !!! | TTAATATTGTCCATTTTTCT+TGG | - | chr1_3:42002802-42002821 | Msa0118810:CDS | 20.0% |
| !! | TTTCATGATATACAGAAAAT+AGG | - | chr1_3:42003252-42003271 | Msa0118810:intron | 20.0% |
| !! | TTCATGATATACAGAAAATA+GGG | - | chr1_3:42003253-42003272 | Msa0118810:intron | 20.0% |
| !! | GAATAGGATAAATTAAATGA+AGG | + | chr1_3:42003370-42003389 | None:intergenic | 20.0% |
| !! | ATTCATGATACAAAAATGAA+AGG | + | chr1_3:42003656-42003675 | None:intergenic | 20.0% |
| !!! | TGAATCACACTTTTTTTTTA+TGG | - | chr1_3:42003671-42003690 | Msa0118810:intron | 20.0% |
| !!! | ATTTTGATTTCATTTATGCA+TGG | - | chr1_3:42004600-42004619 | Msa0118810:intron | 20.0% |
| !!! | CTAATATTTTTTACATTTGG+TGG | - | chr1_3:42004632-42004651 | Msa0118810:CDS | 20.0% |
| !!! | ATGTTTAAGCATATTTTCTA+TGG | - | chr1_3:42004768-42004787 | Msa0118810:CDS | 20.0% |
| !!! | TGTTTAAGCATATTTTCTAT+GGG | - | chr1_3:42004769-42004788 | Msa0118810:CDS | 20.0% |
| ! | AATTATGAGAGAATTAGACA+TGG | + | chr1_3:42002749-42002768 | None:intergenic | 25.0% |
| ! | ATTTCCCATTCATTTGTATT+GGG | + | chr1_3:42003200-42003219 | None:intergenic | 25.0% |
| ! | AATTTCCCATTCATTTGTAT+TGG | + | chr1_3:42003201-42003220 | None:intergenic | 25.0% |
| ! | TCATGATATACAGAAAATAG+GGG | - | chr1_3:42003254-42003273 | Msa0118810:intron | 25.0% |
| !!! | AAAGGAAGATGATTACTTTT+TGG | + | chr1_3:42003281-42003300 | None:intergenic | 25.0% |
| ! | TGTTTCGAATTTCAATTATC+TGG | + | chr1_3:42003435-42003454 | None:intergenic | 25.0% |
| ! | TTCTCGTAGACAATATAATT+TGG | + | chr1_3:42003550-42003569 | None:intergenic | 25.0% |
| !! | TATAGGTTGAGCAATTATAT+AGG | - | chr1_3:42003836-42003855 | Msa0118810:intron | 25.0% |
| !!! | GTGATGATGTTTTAAAAACT+CGG | - | chr1_3:42004304-42004323 | Msa0118810:intron | 25.0% |
| !!! | ACTATGATCAATGCTTTTTA+TGG | + | chr1_3:42004742-42004761 | None:intergenic | 25.0% |
| TATGCATAAGTGTGGAAATT+TGG | + | chr1_3:42002573-42002592 | None:intergenic | 30.0% | |
| ATGATGTAACTTTGTAAGGT+TGG | - | chr1_3:42002776-42002795 | Msa0118810:CDS | 30.0% | |
| TTAACTTACACAGATGTATC+GGG | + | chr1_3:42002882-42002901 | None:intergenic | 30.0% | |
| CTTAACTTACACAGATGTAT+CGG | + | chr1_3:42002883-42002902 | None:intergenic | 30.0% | |
| ! | CAAAGTATCACACAAGAAAA+AGG | + | chr1_3:42002961-42002980 | None:intergenic | 30.0% |
| ATGGATAAAAAGCTGTTGAA+AGG | + | chr1_3:42002985-42003004 | None:intergenic | 30.0% | |
| TTGTTCATTCCTTTATCTGA+TGG | - | chr1_3:42003174-42003193 | Msa0118810:intron | 30.0% | |
| CATGATATACAGAAAATAGG+GGG | - | chr1_3:42003255-42003274 | Msa0118810:intron | 30.0% | |
| ! | GAAAGGAAGATTTTCTTTTG+AGG | + | chr1_3:42003314-42003333 | None:intergenic | 30.0% |
| TTAGTATAGAGGAAAGTGAA+AGG | + | chr1_3:42003331-42003350 | None:intergenic | 30.0% | |
| CAGGATAGTAGTAAAATCAA+TGG | - | chr1_3:42003471-42003490 | Msa0118810:intron | 30.0% | |
| TCTATTCCAAATCATGAGAT+TGG | + | chr1_3:42003615-42003634 | None:intergenic | 30.0% | |
| CTTACGTTACGTTCTTATAT+AGG | - | chr1_3:42003819-42003838 | Msa0118810:intron | 30.0% | |
| ! | ACGGAAGTGTATAAAATCTA+TGG | - | chr1_3:42003948-42003967 | Msa0118810:intron | 30.0% |
| ! | CGGAAGTGTATAAAATCTAT+GGG | - | chr1_3:42003949-42003968 | Msa0118810:intron | 30.0% |
| GGTAGATGCTACATAAATTA+TGG | - | chr1_3:42004325-42004344 | Msa0118810:intron | 30.0% | |
| ATGCATACTTTCATTGGATT+TGG | + | chr1_3:42004388-42004407 | None:intergenic | 30.0% | |
| TCATTGATGCATACTTTCAT+TGG | + | chr1_3:42004394-42004413 | None:intergenic | 30.0% | |
| !! | CAAGTTGATCTCTTAATCAT+GGG | - | chr1_3:42004491-42004510 | Msa0118810:intron | 30.0% |
| TTTCATTTATGCATGGTTGA+TGG | - | chr1_3:42004607-42004626 | Msa0118810:intron | 30.0% | |
| ! | TAAGCATATTTTCTATGGGA+TGG | - | chr1_3:42004773-42004792 | Msa0118810:CDS | 30.0% |
| AAAGAGAAGGATGAAGATGA+AGG | - | chr1_3:42002401-42002420 | Msa0118810:three_prime_UTR | 35.0% | |
| AAGCTTGTATGCTCTTAAGT+GGG | - | chr1_3:42002452-42002471 | Msa0118810:three_prime_UTR | 35.0% | |
| AACGTTGAAGAGGTTATCAA+GGG | + | chr1_3:42002478-42002497 | None:intergenic | 35.0% | |
| TAACGTTGAAGAGGTTATCA+AGG | + | chr1_3:42002479-42002498 | None:intergenic | 35.0% | |
| TGATAACCTCTTCAACGTTA+TGG | - | chr1_3:42002479-42002498 | Msa0118810:exon | 35.0% | |
| TGGAACAACATCTGAAAATG+AGG | - | chr1_3:42002518-42002537 | Msa0118810:CDS | 35.0% | |
| AACAACATCTGAAAATGAGG+AGG | - | chr1_3:42002521-42002540 | Msa0118810:CDS | 35.0% | |
| ACAACATCTGAAAATGAGGA+GGG | - | chr1_3:42002522-42002541 | Msa0118810:CDS | 35.0% | |
| TTATGCATACCCTATACCTA+TGG | - | chr1_3:42002584-42002603 | Msa0118810:intron | 35.0% | |
| TATGCATACCCTATACCTAT+GGG | - | chr1_3:42002585-42002604 | Msa0118810:intron | 35.0% | |
| ATATACTAACCAATACCAGC+TGG | + | chr1_3:42002612-42002631 | None:intergenic | 35.0% | |
| AGGAAGTTAGCAAAGAAAGT+TGG | + | chr1_3:42002649-42002668 | None:intergenic | 35.0% | |
| GAGCAATTCTCCAAGAAAAA+TGG | + | chr1_3:42002815-42002834 | None:intergenic | 35.0% | |
| CGGAAATGAGCAAAATCATA+TGG | + | chr1_3:42002843-42002862 | None:intergenic | 35.0% | |
| ACGGGAATGAGAAAAATAGA+TGG | - | chr1_3:42002921-42002940 | Msa0118810:intron | 35.0% | |
| CGGGAATGAGAAAAATAGAT+GGG | - | chr1_3:42002922-42002941 | Msa0118810:intron | 35.0% | |
| TTCAAAGAATCTGCAACTTC+AGG | + | chr1_3:42003013-42003032 | None:intergenic | 35.0% | |
| ATGGCCCAATACAAATGAAT+GGG | - | chr1_3:42003193-42003212 | Msa0118810:intron | 35.0% | |
| !! | TTTTGAGGAAGGAAAGTGAA+AGG | + | chr1_3:42003299-42003318 | None:intergenic | 35.0% |
| !! | GGAAGATTTTCTTTTGAGGA+AGG | + | chr1_3:42003310-42003329 | None:intergenic | 35.0% |
| CATAGTATATATGCACGACT+AGG | + | chr1_3:42003709-42003728 | None:intergenic | 35.0% | |
| GTGCATATATACTATGACCT+TGG | - | chr1_3:42003713-42003732 | Msa0118810:intron | 35.0% | |
| ATTCAGATACTCTTTAGCCA+AGG | + | chr1_3:42003733-42003752 | None:intergenic | 35.0% | |
| GAAATGAGTTTCGCTTTACA+AGG | + | chr1_3:42003878-42003897 | None:intergenic | 35.0% | |
| GTATGCATCAATGAAAATGC+AGG | - | chr1_3:42004400-42004419 | Msa0118810:intron | 35.0% | |
| ! | GCAGAAAGTGTGATTCTTAA+TGG | - | chr1_3:42004428-42004447 | Msa0118810:intron | 35.0% |
| ! | TGCAAGAGAAATGATTTGTC+AGG | - | chr1_3:42004454-42004473 | Msa0118810:intron | 35.0% |
| !! | GCAAGTTGATCTCTTAATCA+TGG | - | chr1_3:42004490-42004509 | Msa0118810:intron | 35.0% |
| !!! | TTTACCTTTTGAGTTTGCCA+AGG | + | chr1_3:42004526-42004545 | None:intergenic | 35.0% |
| AATAGTCACTTACACTTCCA+AGG | + | chr1_3:42004667-42004686 | None:intergenic | 35.0% | |
| ! | GGATAAGTCTGGAATAATCT+TGG | - | chr1_3:42004794-42004813 | Msa0118810:CDS | 35.0% |
| AAGGATGAAGATGAAGGTGA+TGG | - | chr1_3:42002407-42002426 | Msa0118810:three_prime_UTR | 40.0% | |
| GAAGCTTGTATGCTCTTAAG+TGG | - | chr1_3:42002451-42002470 | Msa0118810:three_prime_UTR | 40.0% | |
| CGTTATGGCTACTGATACTA+TGG | - | chr1_3:42002494-42002513 | Msa0118810:CDS | 40.0% | |
| ATGGCTACTGATACTATGGA+TGG | - | chr1_3:42002498-42002517 | Msa0118810:CDS | 40.0% | |
| CAACATCTGAAAATGAGGAG+GGG | - | chr1_3:42002523-42002542 | Msa0118810:CDS | 40.0% | |
| GTATAGGGTATGCATAAGTG+TGG | + | chr1_3:42002581-42002600 | None:intergenic | 40.0% | |
| TGTGTAAGTTAAGTCACGCT+CGG | - | chr1_3:42002890-42002909 | Msa0118810:intron | 40.0% | |
| ! | AGCTGCAGATTTTTCTTGCT+GGG | + | chr1_3:42003041-42003060 | None:intergenic | 40.0% |
| ! | TAGCTGCAGATTTTTCTTGC+TGG | + | chr1_3:42003042-42003061 | None:intergenic | 40.0% |
| TGTATTGGGCCATCAGATAA+AGG | + | chr1_3:42003186-42003205 | None:intergenic | 40.0% | |
| GATGGCCCAATACAAATGAA+TGG | - | chr1_3:42003192-42003211 | Msa0118810:intron | 40.0% | |
| ACAGACATTATTCTCTCGTC+AGG | - | chr1_3:42003452-42003471 | Msa0118810:intron | 40.0% | |
| AGGGAACCAATCTCATGATT+TGG | - | chr1_3:42003606-42003625 | Msa0118810:intron | 40.0% | |
| AGCGAAACTCATTTCCTTGA+CGG | - | chr1_3:42003883-42003902 | Msa0118810:intron | 40.0% | |
| ! | TTTTTACGGAACTTCCGTCA+AGG | + | chr1_3:42003900-42003919 | None:intergenic | 40.0% |
| TTCTATGGGATGGATAAGTC+TGG | - | chr1_3:42004783-42004802 | Msa0118810:CDS | 40.0% | |
| !! | TGGAAGTGTTGACCAAGTGA+GGG | - | chr1_3:42002365-42002384 | Msa0118810:three_prime_UTR | 45.0% |
| GAGGTGCAGAAGAAAAGAGA+AGG | - | chr1_3:42002388-42002407 | Msa0118810:three_prime_UTR | 45.0% | |
| ! | GATGAAGATGAAGGTGATGG+TGG | - | chr1_3:42002410-42002429 | Msa0118810:three_prime_UTR | 45.0% |
| GTGGCAATAGATGAGAGTGA+TGG | - | chr1_3:42002429-42002448 | Msa0118810:three_prime_UTR | 45.0% | |
| CAGTAGCCATAACGTTGAAG+AGG | + | chr1_3:42002488-42002507 | None:intergenic | 45.0% | |
| ATCTGAAAATGAGGAGGGGA+TGG | - | chr1_3:42002527-42002546 | Msa0118810:CDS | 45.0% | |
| !! | TCTGCAACTTCAGGTGTTGA+TGG | + | chr1_3:42003004-42003023 | None:intergenic | 45.0% |
| AATCTGCAGCTATTGCCTCA+CGG | - | chr1_3:42003050-42003069 | Msa0118810:intron | 45.0% | |
| CTCTTAATCATGGGTAGTCG+TGG | - | chr1_3:42004500-42004519 | Msa0118810:intron | 45.0% | |
| GGTGGCTTCACAATGAGAAT+AGG | + | chr1_3:42004710-42004729 | None:intergenic | 45.0% | |
| ! | TTTTTATGGTGCTCCTCTGG+TGG | + | chr1_3:42004728-42004747 | None:intergenic | 45.0% |
| !! | TGCTTTTTATGGTGCTCCTC+TGG | + | chr1_3:42004731-42004750 | None:intergenic | 45.0% |
| !!! | TAGTTTTTTTTTTTTTTTTA+CGG | + | chr1_3:42003914-42003933 | None:intergenic | 5.0% |
| !! | TTTAATATAAAATATACAAT+TGG | + | chr1_3:42004076-42004095 | None:intergenic | 5.0% |
| !! | CATAAATATTAAATAAATTT+AGG | + | chr1_3:42004227-42004246 | None:intergenic | 5.0% |
| !! | GTGGAAGTGTTGACCAAGTG+AGG | - | chr1_3:42002364-42002383 | Msa0118810:three_prime_UTR | 50.0% |
| !! | GGAAGTGTTGACCAAGTGAG+GGG | - | chr1_3:42002366-42002385 | Msa0118810:three_prime_UTR | 50.0% |
| CAGCTGGTCCCATAGGTATA+GGG | + | chr1_3:42002596-42002615 | None:intergenic | 50.0% | |
| CTTACACAGATGTATCGGGC+AGG | + | chr1_3:42002878-42002897 | None:intergenic | 50.0% | |
| !! | GTCACGCTCGGCTATTTTGA+CGG | - | chr1_3:42002902-42002921 | Msa0118810:intron | 50.0% |
| !!! | TCACGCTCGGCTATTTTGAC+GGG | - | chr1_3:42002903-42002922 | Msa0118810:intron | 50.0% |
| ATCTGCAGCTATTGCCTCAC+GGG | - | chr1_3:42003051-42003070 | Msa0118810:intron | 50.0% | |
| ACGGGCTTTGCAAATGTGCA+AGG | - | chr1_3:42003069-42003088 | Msa0118810:intron | 50.0% | |
| GCAAATGTGCAAGGACAAGC+AGG | - | chr1_3:42003078-42003097 | Msa0118810:intron | 50.0% | |
| ! | GTGGCCTTGGCAAACTCAAA+AGG | - | chr1_3:42004519-42004538 | Msa0118810:intron | 50.0% |
| ! | TTTGGTGGCAGAGCATTCCT+TGG | - | chr1_3:42004647-42004666 | Msa0118810:CDS | 50.0% |
| TCTCATTGTGAAGCCACCAG+AGG | - | chr1_3:42004712-42004731 | Msa0118810:CDS | 50.0% | |
| !! | AGTGTTGACCAAGTGAGGGG+AGG | - | chr1_3:42002369-42002388 | Msa0118810:three_prime_UTR | 55.0% |
| CCAGCTGGTCCCATAGGTAT+AGG | + | chr1_3:42002597-42002616 | None:intergenic | 55.0% | |
| CCTATACCTATGGGACCAGC+TGG | - | chr1_3:42002594-42002613 | Msa0118810:intron | 55.0% | |
| CCAATACCAGCTGGTCCCAT+AGG | + | chr1_3:42002603-42002622 | None:intergenic | 55.0% | |
| CCTATGGGACCAGCTGGTAT+TGG | - | chr1_3:42002600-42002619 | Msa0118810:intron | 55.0% | |
| CGGGCAGGTGTATTTCTCAG+CGG | + | chr1_3:42002863-42002882 | None:intergenic | 55.0% | |
| GCACATTTGCAAAGCCCGTG+AGG | + | chr1_3:42003068-42003087 | None:intergenic | 55.0% | |
| TGTGCAAGGACAAGCAGGTG+CGG | - | chr1_3:42003083-42003102 | Msa0118810:intron | 55.0% | |
| ATCATGGGTAGTCGTGGCCT+TGG | - | chr1_3:42004506-42004525 | Msa0118810:intron | 55.0% | |
| CTTCTGCACCTCCCCTCACT+TGG | + | chr1_3:42002380-42002399 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 42002351 | 42004897 | 42002351 | ID=Msa0118810;Name=Msa0118810 |
| chr1_3 | mRNA | 42002351 | 42004897 | 42002351 | ID=Msa0118810-mRNA-1;Parent=Msa0118810;Name=Msa0118810-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.75|1|1|1|4|143|197 |
| chr1_3 | exon | 42002351 | 42002590 | 42002351 | ID=Msa0118810-mRNA-1:exon:12739;Parent=Msa0118810-mRNA-1 |
| chr1_3 | exon | 42002708 | 42002826 | 42002708 | ID=Msa0118810-mRNA-1:exon:12738;Parent=Msa0118810-mRNA-1 |
| chr1_3 | exon | 42004149 | 42004255 | 42004149 | ID=Msa0118810-mRNA-1:exon:12737;Parent=Msa0118810-mRNA-1 |
| chr1_3 | exon | 42004627 | 42004897 | 42004627 | ID=Msa0118810-mRNA-1:exon:12736;Parent=Msa0118810-mRNA-1 |
| chr1_3 | CDS | 42004627 | 42004897 | 42004627 | ID=Msa0118810-mRNA-1:cds;Parent=Msa0118810-mRNA-1 |
| chr1_3 | CDS | 42004149 | 42004255 | 42004149 | ID=Msa0118810-mRNA-1:cds;Parent=Msa0118810-mRNA-1 |
| chr1_3 | CDS | 42002708 | 42002826 | 42002708 | ID=Msa0118810-mRNA-1:cds;Parent=Msa0118810-mRNA-1 |
| chr1_3 | CDS | 42002494 | 42002590 | 42002494 | ID=Msa0118810-mRNA-1:cds;Parent=Msa0118810-mRNA-1 |
| chr1_3 | three_prime_UTR | 42002351 | 42002493 | 42002351 | ID=Msa0118810-mRNA-1:three_prime_utr;Parent=Msa0118810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
