AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0077980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077980 MtrunA17_Chr1g0188111 99.448 181 1 0 1 181 1 181 1.17e-134 374
Msa0077980 MtrunA17_Chr5g0413451 51.934 181 87 0 1 181 1 181 1.26e-67 204
Msa0077980 MtrunA17_Chr5g0413441 51.934 181 87 0 1 181 1 181 1.26e-67 204
Msa0077980 MtrunA17_Chr6g0450081 51.934 181 87 0 1 181 1 181 1.39e-67 204
Msa0077980 MtrunA17_Chr1g0194261 51.934 181 87 0 1 181 1 181 1.64e-67 204
Msa0077980 MtrunA17_Chr7g0270301 51.381 181 88 0 1 181 1 181 4.79e-67 202
Msa0077980 MtrunA17_Chr5g0401761 50.000 180 90 0 1 180 1 180 2.22e-65 198
Msa0077980 MtrunA17_Chr5g0395631 51.149 174 85 0 1 174 1 174 5.09e-62 190
Msa0077980 MtrunA17_Chr4g0039591 50.575 174 86 0 1 174 1 174 8.85e-61 187
Msa0077980 MtrunA17_Chr4g0072861 48.276 174 90 0 1 174 1 174 1.67e-60 186
Msa0077980 MtrunA17_Chr5g0395641 47.253 182 94 1 1 180 1 182 3.16e-56 175
Msa0077980 MtrunA17_Chr8g0373271 39.264 163 98 1 19 180 18 180 1.55e-39 132
Msa0077980 MtrunA17_Chr2g0287721 34.973 183 106 2 1 173 1 180 2.49e-32 115
Msa0077980 MtrunA17_Chr5g0434561 38.028 142 87 1 12 152 14 155 2.64e-28 103
Msa0077980 MtrunA17_Chr5g0401071 35.811 148 82 2 12 152 14 155 9.33e-25 95.1
Msa0077980 MtrunA17_Chr7g0271761 35.088 171 99 2 16 174 19 189 1.31e-23 92.4
Msa0077980 MtrunA17_Chr4g0012371 34.058 138 84 2 19 152 2 136 7.00e-23 89.7
Msa0077980 MtrunA17_Chr2g0294701 40.000 130 78 0 16 145 19 148 3.45e-22 88.6
Msa0077980 MtrunA17_Chr4g0068171 34.503 171 100 2 16 174 19 189 6.81e-22 87.8
Msa0077980 MtrunA17_Chr5g0395651 54.795 73 33 0 1 73 1 73 1.10e-21 84.0
Msa0077980 MtrunA17_Chr1g0189361 33.058 121 75 3 18 133 15 134 7.92e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077980 AT3G22950.1 89.503 181 19 0 1 181 1 181 1.08e-121 341
Msa0077980 AT3G22950.2 89.503 181 19 0 1 181 1 181 1.08e-121 341
Msa0077980 AT1G23490.1 52.486 181 86 0 1 181 1 181 3.73e-68 206
Msa0077980 AT1G70490.2 52.486 181 86 0 1 181 1 181 3.73e-68 206
Msa0077980 AT1G70490.7 52.486 181 86 0 1 181 1 181 3.73e-68 206
Msa0077980 AT1G70490.4 52.486 181 86 0 1 181 1 181 3.73e-68 206
Msa0077980 AT1G70490.3 52.486 181 86 0 1 181 1 181 3.73e-68 206
Msa0077980 AT1G70490.1 52.486 181 86 0 1 181 1 181 3.73e-68 206
Msa0077980 AT1G70490.6 52.486 181 86 0 1 181 1 181 3.73e-68 206
Msa0077980 AT1G70490.5 52.486 181 86 0 1 181 1 181 3.73e-68 206
Msa0077980 AT1G10630.1 51.934 181 87 0 1 181 1 181 2.70e-67 203
Msa0077980 AT1G10630.2 51.934 181 87 0 1 181 1 181 2.70e-67 203
Msa0077980 AT5G14670.2 51.934 181 87 0 1 181 1 181 4.71e-67 203
Msa0077980 AT5G14670.3 51.934 181 87 0 1 181 1 181 4.71e-67 203
Msa0077980 AT3G62290.3 51.934 181 87 0 1 181 1 181 4.82e-67 203
Msa0077980 AT3G62290.1 51.934 181 87 0 1 181 1 181 4.82e-67 203
Msa0077980 AT3G62290.2 51.934 181 87 0 1 181 1 181 4.82e-67 203
Msa0077980 AT2G47170.2 51.934 181 87 0 1 181 1 181 5.31e-67 202
Msa0077980 AT2G47170.1 51.934 181 87 0 1 181 1 181 5.31e-67 202
Msa0077980 AT2G47170.3 51.934 181 87 0 1 181 1 181 5.31e-67 202
Msa0077980 AT5G14670.1 51.381 181 88 0 1 181 1 181 2.08e-66 201
Msa0077980 AT2G24765.1 49.425 174 88 0 1 174 1 174 2.05e-60 186
Msa0077980 AT5G17060.2 48.851 174 89 0 1 174 1 174 5.41e-60 185
Msa0077980 AT5G17060.1 48.851 174 89 0 1 174 1 174 5.41e-60 185
Msa0077980 AT2G15310.1 48.066 181 94 0 1 181 1 181 1.46e-59 184
Msa0077980 AT3G03120.1 49.425 174 88 0 1 174 1 174 2.07e-59 184
Msa0077980 AT2G24765.2 52.344 128 61 0 1 128 1 128 1.49e-44 144
Msa0077980 AT3G03120.2 50.000 130 65 0 1 130 1 130 2.58e-40 133
Msa0077980 AT2G18390.1 39.877 163 97 1 19 180 18 180 3.95e-40 134
Msa0077980 AT5G52210.1 34.615 182 112 1 1 175 1 182 2.06e-34 120
Msa0077980 AT5G52210.2 34.615 182 112 1 1 175 1 182 2.06e-34 120
Msa0077980 AT1G02430.1 36.216 185 104 5 1 173 1 183 4.42e-34 119
Msa0077980 AT1G02440.1 34.054 185 108 5 1 173 1 183 3.67e-31 112
Msa0077980 AT5G37680.1 36.620 142 89 1 12 152 14 155 5.12e-27 101
Msa0077980 AT1G02430.2 34.568 162 96 4 1 154 1 160 3.86e-26 98.2
Msa0077980 AT3G49870.1 35.811 148 82 2 12 152 14 155 2.64e-24 94.4
Msa0077980 AT5G67560.1 35.135 148 83 2 12 152 14 155 1.34e-23 92.4
Msa0077980 AT3G49860.1 34.043 141 92 1 13 152 7 147 1.52e-23 92.0
Msa0077980 AT3G62560.1 33.918 171 101 1 16 174 19 189 1.04e-22 90.1
Msa0077980 AT3G49870.2 35.461 141 78 2 19 152 2 136 1.89e-22 89.0
Msa0077980 AT5G37680.2 34.646 127 80 1 47 170 3 129 2.56e-22 87.8
Msa0077980 AT4G02080.1 33.333 171 102 1 16 174 19 189 4.56e-22 88.6
Msa0077980 AT1G56330.1 40.000 130 78 0 16 145 19 148 2.42e-21 86.7
Msa0077980 AT1G09180.1 40.000 130 78 0 16 145 19 148 5.56e-20 83.2
Msa0077980 AT1G02440.2 27.742 155 76 4 1 154 1 120 1.27e-14 67.4

Find 77 sgRNAs with CRISPR-Local

Find 478 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTAGTTATTAATTAATT+TGG 0.073843 1_2:+55202020 Msa0077980:five_prime_UTR
GATAGTTGTAGTTGATTAAA+AGG 0.099548 1_2:+55202049 Msa0077980:five_prime_UTR
CCGATTTGATTTGGCGATTT+GGG 0.232061 1_2:-55201800 None:intergenic
GGCTTCTTTCTATAACAATT+TGG 0.253823 1_2:-55207628 None:intergenic
ACCGATTTGATTTGGCGATT+TGG 0.267331 1_2:-55201801 None:intergenic
TCATTTCAGGTCTGGGATCT+TGG 0.315908 1_2:+55207090 Msa0077980:intron
GGATGCAGCAAACAGATAAA+AGG 0.329957 1_2:-55207678 None:intergenic
GAATGAACACCGATTTGATT+TGG 0.333185 1_2:-55201809 None:intergenic
GCTGGGTTTCCTTGCCTTGT+TGG 0.337792 1_2:+55207726 Msa0077980:three_prime_UTR
AATTAGTTATTAATTAATTT+GGG 0.343296 1_2:+55202021 Msa0077980:five_prime_UTR
GATGGTCTTGGATGGATTGC+CGG 0.370902 1_2:+55207408 Msa0077980:CDS
GAGTATAAGATTGTTGTTGT+TGG 0.394215 1_2:+55202124 Msa0077980:CDS
ACTCTTTATAAATTGCATCT+TGG 0.394363 1_2:+55202172 Msa0077980:CDS
GGCTTTATATGATAGCGAAT+TGG 0.402139 1_2:+55207747 Msa0077980:three_prime_UTR
AATTAGCCTATCTGTATGGC+TGG 0.404702 1_2:+55207708 Msa0077980:three_prime_UTR
TGGATTGCCGGGCGAGTAAC+CGG 0.406341 1_2:+55207420 Msa0077980:CDS
TGCTTTGCCGGTTACTCGCC+CGG 0.406522 1_2:-55207427 None:intergenic
GTTGCGATTGCGAAGAGAAT+TGG 0.416440 1_2:-55201831 None:intergenic
ACAATCTTATACTCTTTAGC+AGG 0.426577 1_2:-55202115 None:intergenic
GACGGCCTTTATGATGGTCT+TGG 0.432233 1_2:+55207396 Msa0077980:CDS
CAAGCTTGCAGCGCCCTCTC+AGG 0.432795 1_2:+55207372 Msa0077980:CDS
AAACCCACATCATGCTTTGC+CGG 0.443216 1_2:-55207439 None:intergenic
GGGCAATGATGTCTAGATTC+TGG 0.443324 1_2:+55202080 Msa0077980:CDS
TAAGATTGTTGTTGTTGGAT+TGG 0.448953 1_2:+55202129 Msa0077980:CDS
ATCCTTCATTAAAGAGATCC+TGG 0.463726 1_2:-55207199 None:intergenic
ATAGTTGTAGTTGATTAAAA+GGG 0.463809 1_2:+55202050 Msa0077980:five_prime_UTR
TCCATCCAAGACCATCATAA+AGG 0.464813 1_2:-55207401 None:intergenic
AAAGCATGATGTGGGTTTGC+TGG 0.470420 1_2:+55207444 Msa0077980:exon
CATCAATTAGCCTATCTGTA+TGG 0.484638 1_2:+55207704 Msa0077980:three_prime_UTR
TGCTAATAAACAAGATATCA+AGG 0.484675 1_2:+55207278 Msa0077980:CDS
GGAAACCCAGCCATACAGAT+AGG 0.484935 1_2:-55207714 None:intergenic
CCCAAATCGCCAAATCAAAT+CGG 0.492653 1_2:+55201800 Msa0077980:five_prime_UTR
GCCTTTATGATGGTCTTGGA+TGG 0.493098 1_2:+55207400 Msa0077980:CDS
TAGTTGATTAAAAGGGAGGA+TGG 0.496304 1_2:+55202057 Msa0077980:exon
AATATGTTGCCCATGATGTC+CGG 0.496677 1_2:-55207128 None:intergenic
AAGAAAGACTCCGGACATCA+TGG 0.503977 1_2:+55207118 Msa0077980:CDS
GTTGATTAAAAGGGAGGATG+GGG 0.505474 1_2:+55202059 Msa0077980:exon
ACAGCATCAAGGATCATGAT+TGG 0.511844 1_2:+55207343 Msa0077980:CDS
TTTCAGGTCTGGGATCTTGG+CGG 0.512294 1_2:+55207093 Msa0077980:intron
ATGGTCTTGGATGGATTGCC+GGG 0.515323 1_2:+55207409 Msa0077980:CDS
AATTCATACACACACTAGCC+TGG 0.526989 1_2:-55207555 None:intergenic
AGAGCATCAGTGATTTCAGC+AGG 0.529085 1_2:-55207312 None:intergenic
TCAGGAGACGGCCTTTATGA+TGG 0.533539 1_2:+55207390 Msa0077980:CDS
CACAGACAACGCTACCTCCC+AGG 0.538657 1_2:+55201853 Msa0077980:five_prime_UTR
TGCAGCGCCCTCTCAGGAGA+CGG 0.539815 1_2:+55207378 Msa0077980:CDS
TTATAAATTGCATCTTGGTG+AGG 0.541529 1_2:+55202177 Msa0077980:CDS
AGCCAGGATCTCTTTAATGA+AGG 0.547926 1_2:+55207197 Msa0077980:CDS
GTTGTAGTTGATTAAAAGGG+AGG 0.548123 1_2:+55202053 Msa0077980:five_prime_UTR
TCGACGTTGCTACCAACAGT+AGG 0.548630 1_2:-55202214 None:intergenic
TGTGGGTTTGCTGGAAACTA+AGG 0.552981 1_2:+55207453 Msa0077980:three_prime_UTR
AGTTGATTAAAAGGGAGGAT+GGG 0.553148 1_2:+55202058 Msa0077980:exon
TCGACAGCAGTGATAGAGCC+AGG 0.557461 1_2:+55207181 Msa0077980:CDS
CATAAAGGCCGTCTCCTGAG+AGG 0.561891 1_2:-55207386 None:intergenic
ATTAGCCTATCTGTATGGCT+GGG 0.562189 1_2:+55207709 Msa0077980:three_prime_UTR
CATATAAAGCCAACAAGGCA+AGG 0.562323 1_2:-55207735 None:intergenic
CTTGTTTATTAGCAAAGACA+AGG 0.566607 1_2:-55207269 None:intergenic
ATATTTCAAAGAATCAAGCC+AGG 0.572391 1_2:+55207537 Msa0077980:three_prime_UTR
CAATTACAGCATGAGTTCCT+CGG 0.575990 1_2:-55207152 None:intergenic
CCTCTGCATTGCATGCACCT+TGG 0.577104 1_2:+55207649 Msa0077980:three_prime_UTR
TCTGTCACTTCACAGCATCA+AGG 0.579384 1_2:+55207332 Msa0077980:CDS
AAGATGCAATTTATAAAGAG+TGG 0.580200 1_2:-55202170 None:intergenic
TTGATTAAAAGGGAGGATGG+GGG 0.584384 1_2:+55202060 Msa0077980:exon
AGAAAGACTCCGGACATCAT+GGG 0.590125 1_2:+55207119 Msa0077980:CDS
ATAAAGGCCGTCTCCTGAGA+GGG 0.592089 1_2:-55207385 None:intergenic
CGACGTTGCTACCAACAGTA+GGG 0.595721 1_2:-55202213 None:intergenic
GTTACTACTAACCCTACTGT+TGG 0.624128 1_2:+55202202 Msa0077980:CDS
CAGATAGGCTAATTGATGAG+AGG 0.628286 1_2:-55207699 None:intergenic
TTGGCGGACAAGAAAGACTC+CGG 0.636413 1_2:+55207109 Msa0077980:CDS
CAGATAAAAGGAAGTGACCA+AGG 0.637812 1_2:-55207666 None:intergenic
TAACCGGCAAAGCATGATGT+GGG 0.639528 1_2:+55207436 Msa0077980:exon
CAATCTTATACTCTTTAGCA+GGG 0.643634 1_2:-55202114 None:intergenic
GTAACCGGCAAAGCATGATG+TGG 0.646220 1_2:+55207435 Msa0077980:exon
CCAAGGTGCATGCAATGCAG+AGG 0.647435 1_2:-55207649 None:intergenic
GTTGTTGGATTGGATAACGC+TGG 0.661294 1_2:+55202139 Msa0077980:CDS
GCTATCATATAAAGCCAACA+AGG 0.696600 1_2:-55207740 None:intergenic
AGAAAAGGATCGAACCTGGG+AGG 0.724445 1_2:-55201867 None:intergenic
TCATGGGCAACATATTACCG+AGG 0.738917 1_2:+55207135 Msa0077980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTAATTTAATTGATATAA+TGG - chr1_2:55204333-55204352 None:intergenic 10.0%
!! ACATAATCAAATGAATTAAT+CGG - chr1_2:55201978-55201997 None:intergenic 15.0%
!! ACATAAGTTAAAAGAAAAAT+TGG + chr1_2:55202468-55202487 Msa0077980:intron 15.0%
!! GAATATACAAGATAATTATA+AGG + chr1_2:55202490-55202509 Msa0077980:intron 15.0%
!! TAAGAAAATAGAAGATTAAA+TGG + chr1_2:55203497-55203516 Msa0077980:intron 15.0%
!! AAGAAAATAGAAGATTAAAT+GGG + chr1_2:55203498-55203517 Msa0077980:intron 15.0%
!! AAATTGTACTTAGAATTTAT+AGG - chr1_2:55203608-55203627 None:intergenic 15.0%
!! ATATTCATATTTACTTCAAT+AGG + chr1_2:55204543-55204562 Msa0077980:intron 15.0%
!! AATTTACTATAGTAGTAAAA+TGG - chr1_2:55205416-55205435 None:intergenic 15.0%
!!! AAAATTTAGGTTGAAAAAAA+TGG - chr1_2:55206658-55206677 None:intergenic 15.0%
!! ATAGTTGTAGTTGATTAAAA+GGG + chr1_2:55202050-55202069 Msa0077980:five_prime_UTR 20.0%
!! TATAGCAAAATGATGATAAA+GGG - chr1_2:55202278-55202297 None:intergenic 20.0%
!! TATAGGATAAATAGTGTTAT+AGG + chr1_2:55202591-55202610 Msa0077980:intron 20.0%
!! TTACACATTAACATGAATTT+GGG + chr1_2:55203277-55203296 Msa0077980:intron 20.0%
!!! TGATGGATATACATATAATA+CGG - chr1_2:55203573-55203592 None:intergenic 20.0%
!! ACATCTTATGTAAATTCTAA+TGG - chr1_2:55203859-55203878 None:intergenic 20.0%
!! AAAATCATAAAAACAAACTC+TGG + chr1_2:55204062-55204081 Msa0077980:intron 20.0%
!! TTACTACATTTGAACTTATT+TGG - chr1_2:55204775-55204794 None:intergenic 20.0%
!! TATGTCATGATATTAGTATT+AGG + chr1_2:55205150-55205169 Msa0077980:intron 20.0%
!! AGTTATTCATGATCATAATA+TGG + chr1_2:55205318-55205337 Msa0077980:intron 20.0%
!!! ATTTTAATTATTTTTCCCCT+TGG - chr1_2:55205618-55205637 None:intergenic 20.0%
!!! ATTTTGTTAGGAAAAAATGT+GGG - chr1_2:55205652-55205671 None:intergenic 20.0%
!!! AATTTTGTTAGGAAAAAATG+TGG - chr1_2:55205653-55205672 None:intergenic 20.0%
!! TTAATTTATTTGTTCAACCT+GGG - chr1_2:55205835-55205854 None:intergenic 20.0%
!! ATGATTCAACTCAATTAATT+GGG - chr1_2:55205942-55205961 None:intergenic 20.0%
!! AATGATTCAACTCAATTAAT+TGG - chr1_2:55205943-55205962 None:intergenic 20.0%
!!! GAAATTAATGCTTTGAAAAT+CGG - chr1_2:55206352-55206371 None:intergenic 20.0%
!!! GTACCATTTAAATTTTCTTA+GGG + chr1_2:55206479-55206498 Msa0077980:intron 20.0%
!!! ATGTGTTTTTAAACTACATT+TGG + chr1_2:55207004-55207023 Msa0077980:intron 20.0%
!! TAGATAGTTCTTCTTTTCTT+CGG + chr1_2:55201753-55201772 Msa0077980:five_prime_UTR 25.0%
! GATAGTTGTAGTTGATTAAA+AGG + chr1_2:55202049-55202068 Msa0077980:five_prime_UTR 25.0%
! AAGATGCAATTTATAAAGAG+TGG - chr1_2:55202173-55202192 None:intergenic 25.0%
! ACTCTTTATAAATTGCATCT+TGG + chr1_2:55202172-55202191 Msa0077980:CDS 25.0%
! GTATAGCAAAATGATGATAA+AGG - chr1_2:55202279-55202298 None:intergenic 25.0%
!! TTGTTGATCAAAGTTTTCAT+TGG + chr1_2:55202357-55202376 Msa0077980:intron 25.0%
! CAAATATTAGCGTTCATATT+TGG + chr1_2:55202413-55202432 Msa0077980:intron 25.0%
! AAAGGTTGTTCCTTTATATT+TGG + chr1_2:55202531-55202550 Msa0077980:intron 25.0%
! TGACAAATATAATCACATTG+TGG - chr1_2:55202918-55202937 None:intergenic 25.0%
!! TTTTTACCATTGAACTGTTT+TGG + chr1_2:55202965-55202984 Msa0077980:intron 25.0%
! AATTTGATTGCTAGAATAGT+TGG + chr1_2:55203043-55203062 Msa0077980:intron 25.0%
! AAAGAAAGACAACTTTAGAT+TGG - chr1_2:55203082-55203101 None:intergenic 25.0%
!!! TCTAAAGTTGTCTTTCTTTT+TGG + chr1_2:55203083-55203102 Msa0077980:intron 25.0%
! ACCTTATTGATAGAAGTTAA+GGG + chr1_2:55203121-55203140 Msa0077980:intron 25.0%
! CTTACACATTAACATGAATT+TGG + chr1_2:55203276-55203295 Msa0077980:intron 25.0%
! AGTAGCGTAATAGATTAATT+GGG - chr1_2:55203692-55203711 None:intergenic 25.0%
! AAGTAGCGTAATAGATTAAT+TGG - chr1_2:55203693-55203712 None:intergenic 25.0%
! AATTAATCTATTACGCTACT+TGG + chr1_2:55203692-55203711 Msa0077980:intron 25.0%
! ATACTATATTTATTCCAACG+TGG - chr1_2:55203958-55203977 None:intergenic 25.0%
! TTTACATATTGCATCCAATA+TGG - chr1_2:55204098-55204117 None:intergenic 25.0%
!!! GCTTTTTTCTTAAATAGAGA+AGG - chr1_2:55204651-55204670 None:intergenic 25.0%
! TGCATATTTAAATGCAGATT+GGG - chr1_2:55204899-55204918 None:intergenic 25.0%
! TTGCATATTTAAATGCAGAT+TGG - chr1_2:55204900-55204919 None:intergenic 25.0%
! TACTAATATCATGACATATC+AGG - chr1_2:55205148-55205167 None:intergenic 25.0%
!!! AAATATGCTTGATATTTTGG+AGG - chr1_2:55205219-55205238 None:intergenic 25.0%
!! AAAGATCAGAATTGTTACTT+CGG - chr1_2:55205247-55205266 None:intergenic 25.0%
! ATTAGCAATATTCAGATTCT+AGG + chr1_2:55205433-55205452 Msa0077980:intron 25.0%
! CTTAATTTATTTGTTCAACC+TGG - chr1_2:55205836-55205855 None:intergenic 25.0%
!! ATCACTGTTAAATTTTGCTA+CGG + chr1_2:55205861-55205880 Msa0077980:intron 25.0%
! TACTGAAGAAATTAAGATCA+AGG + chr1_2:55205910-55205929 Msa0077980:intron 25.0%
! TGATTCAACTCAATTAATTG+GGG - chr1_2:55205941-55205960 None:intergenic 25.0%
! TTAAAGTGAGTAGAATTTGT+TGG + chr1_2:55206031-55206050 Msa0077980:intron 25.0%
!! TCATGATTTAATTGGTTCAA+CGG - chr1_2:55206299-55206318 None:intergenic 25.0%
!! GGTACCATTTAAATTTTCTT+AGG + chr1_2:55206478-55206497 Msa0077980:intron 25.0%
! TAGCCCTAAGAAAATTTAAA+TGG - chr1_2:55206485-55206504 None:intergenic 25.0%
!!! GTGCTGATTAGAAAAAATTT+AGG - chr1_2:55206671-55206690 None:intergenic 25.0%
! ACTGAGTACTAAATTAGAAA+AGG - chr1_2:55206953-55206972 None:intergenic 25.0%
! TTTAAAAACACATGCATACA+TGG - chr1_2:55206997-55207016 None:intergenic 25.0%
! TGCTAATAAACAAGATATCA+AGG + chr1_2:55207278-55207297 Msa0077980:CDS 25.0%
ATTATGTGATTATTCGCTTC+AGG + chr1_2:55201991-55202010 Msa0077980:intron 30.0%
CAATCTTATACTCTTTAGCA+GGG - chr1_2:55202117-55202136 None:intergenic 30.0%
ACAATCTTATACTCTTTAGC+AGG - chr1_2:55202118-55202137 None:intergenic 30.0%
! GAGTATAAGATTGTTGTTGT+TGG + chr1_2:55202124-55202143 Msa0077980:CDS 30.0%
! TAAGATTGTTGTTGTTGGAT+TGG + chr1_2:55202129-55202148 Msa0077980:CDS 30.0%
TTATAAATTGCATCTTGGTG+AGG + chr1_2:55202177-55202196 Msa0077980:CDS 30.0%
TCCTTTATATTTGGTTGTTG+TGG + chr1_2:55202540-55202559 Msa0077980:intron 30.0%
ACCACAACAACCAAATATAA+AGG - chr1_2:55202544-55202563 None:intergenic 30.0%
AGGATAAATAGTGTTATAGG+CGG + chr1_2:55202594-55202613 Msa0077980:intron 30.0%
!!! TTGGTTTTACTTTGTTGTCA+GGG + chr1_2:55202678-55202697 Msa0077980:intron 30.0%
ATTAGTTGAACTTAGTTGTG+TGG + chr1_2:55202801-55202820 Msa0077980:intron 30.0%
TAGATGTAAGTCCTTAAAGA+CGG - chr1_2:55202864-55202883 None:intergenic 30.0%
TTTAAGGACTTACATCTAGA+GGG + chr1_2:55202866-55202885 Msa0077980:intron 30.0%
!! GACACTTTCTTTTTGAAGAA+CGG - chr1_2:55202896-55202915 None:intergenic 30.0%
! TATCAATAAGGTGTTCTCAA+TGG - chr1_2:55203113-55203132 None:intergenic 30.0%
CACCTTATTGATAGAAGTTA+AGG + chr1_2:55203120-55203139 Msa0077980:intron 30.0%
CCTTATTGATAGAAGTTAAG+GGG + chr1_2:55203122-55203141 Msa0077980:intron 30.0%
AAATGCACATCTCCATATTA+GGG - chr1_2:55203178-55203197 None:intergenic 30.0%
AAAATGCACATCTCCATATT+AGG - chr1_2:55203179-55203198 None:intergenic 30.0%
! TAATATGGAGATGTGCATTT+TGG + chr1_2:55203178-55203197 Msa0077980:intron 30.0%
CACAAAATTAAAGATGCTGT+GGG - chr1_2:55203230-55203249 None:intergenic 30.0%
TATTGATCTGAACCAAAAAC+AGG + chr1_2:55203975-55203994 Msa0077980:intron 30.0%
ATTGATCTGAACCAAAAACA+GGG + chr1_2:55203976-55203995 Msa0077980:intron 30.0%
AGACTAAGAGAAAGTAAAGA+GGG - chr1_2:55204020-55204039 None:intergenic 30.0%
AAGACTAAGAGAAAGTAAAG+AGG - chr1_2:55204021-55204040 None:intergenic 30.0%
! TTTTATGATTTTTCCTCGCA+AGG - chr1_2:55204054-55204073 None:intergenic 30.0%
GGATGCAATATGTAAATGTA+AGG + chr1_2:55204102-55204121 Msa0077980:intron 30.0%
ATATGTAAATGTAAGGCTAC+TGG + chr1_2:55204109-55204128 Msa0077980:intron 30.0%
GCTTAGGCCTTAAAAAAATT+TGG - chr1_2:55204198-55204217 None:intergenic 30.0%
TCATATTTACTTCAATAGGC+CGG + chr1_2:55204547-55204566 Msa0077980:intron 30.0%
! AGAAGCCTATTTAGCTTAAA+AGG - chr1_2:55204615-55204634 None:intergenic 30.0%
CTCTATTTAAGAAAAAAGCC+TGG + chr1_2:55204652-55204671 Msa0077980:intron 30.0%
GAGAGAGAATCTAATTTCAT+GGG - chr1_2:55204850-55204869 None:intergenic 30.0%
ATTCTCTTTGTGATAGTCAT+TGG - chr1_2:55205009-55205028 None:intergenic 30.0%
CACAAAGAGAATTGAGTATT+TGG + chr1_2:55205017-55205036 Msa0077980:intron 30.0%
AATATCATGACATATCAGGA+GGG - chr1_2:55205144-55205163 None:intergenic 30.0%
TAATATCATGACATATCAGG+AGG - chr1_2:55205145-55205164 None:intergenic 30.0%
! GGGAAATATGCTTGATATTT+TGG - chr1_2:55205222-55205241 None:intergenic 30.0%
TGGCAATCTAATATGATTCA+GGG - chr1_2:55205396-55205415 None:intergenic 30.0%
ATGGCAATCTAATATGATTC+AGG - chr1_2:55205397-55205416 None:intergenic 30.0%
AACATTGGTAAAAATTGTCC+AGG - chr1_2:55205475-55205494 None:intergenic 30.0%
TTTCTAACTAGCTGTTTAGA+TGG - chr1_2:55205556-55205575 None:intergenic 30.0%
GATTCAACTCAATTAATTGG+GGG - chr1_2:55205940-55205959 None:intergenic 30.0%
! GTTGAATCATTGATAGTTGA+AGG + chr1_2:55205952-55205971 Msa0077980:intron 30.0%
CTTTAAATCACAGCTAAAAC+AGG - chr1_2:55206017-55206036 None:intergenic 30.0%
!!! TTAGGGGATATTTTGTTTTG+TGG + chr1_2:55206093-55206112 Msa0077980:intron 30.0%
AAAATGACCACCAAATGTTT+GGG - chr1_2:55206184-55206203 None:intergenic 30.0%
AAAAATGACCACCAAATGTT+TGG - chr1_2:55206185-55206204 None:intergenic 30.0%
!!! ATTTGGTGGTCATTTTTTAG+TGG + chr1_2:55206188-55206207 Msa0077980:intron 30.0%
!!! TTTGGTGGTCATTTTTTAGT+GGG + chr1_2:55206189-55206208 Msa0077980:intron 30.0%
!!! TTCATTGCATTTTTTCAGCT+TGG - chr1_2:55206216-55206235 None:intergenic 30.0%
CTTCTGGATCATGATTTAAT+TGG - chr1_2:55206307-55206326 None:intergenic 30.0%
TGCTTATTGGAATACATTGT+TGG + chr1_2:55206854-55206873 Msa0077980:intron 30.0%
GCTTATTGGAATACATTGTT+GGG + chr1_2:55206855-55206874 Msa0077980:intron 30.0%
TAGAAAAGGATAATGCTTAC+TGG - chr1_2:55206939-55206958 None:intergenic 30.0%
! TTTTTAAACTACATTTGGCG+CGG + chr1_2:55207009-55207028 Msa0077980:intron 30.0%
TTGTGCAAAATAGTAAAGCT+AGG - chr1_2:55207042-55207061 None:intergenic 30.0%
TCGAATTTGTCATTCATTTC+AGG + chr1_2:55207077-55207096 Msa0077980:intron 30.0%
! TAATGAAGGATGAACTTTTC+AGG + chr1_2:55207211-55207230 Msa0077980:CDS 30.0%
CTTGTTTATTAGCAAAGACA+AGG - chr1_2:55207272-55207291 None:intergenic 30.0%
ATATTTCAAAGAATCAAGCC+AGG + chr1_2:55207537-55207556 Msa0077980:three_prime_UTR 30.0%
GGCTTCTTTCTATAACAATT+TGG - chr1_2:55207631-55207650 None:intergenic 30.0%
!! GAATGAACACCGATTTGATT+TGG - chr1_2:55201812-55201831 None:intergenic 35.0%
CAGATCGATAGAGAAAGAAA+AGG - chr1_2:55201885-55201904 None:intergenic 35.0%
! GAATAAAGCGTTTATTGCGT+TGG - chr1_2:55201924-55201943 None:intergenic 35.0%
GTTGTAGTTGATTAAAAGGG+AGG + chr1_2:55202053-55202072 Msa0077980:five_prime_UTR 35.0%
TAGTTGATTAAAAGGGAGGA+TGG + chr1_2:55202057-55202076 Msa0077980:exon 35.0%
AGTTGATTAAAAGGGAGGAT+GGG + chr1_2:55202058-55202077 Msa0077980:exon 35.0%
! CTACAAAAACATTCGATTCG+AGG + chr1_2:55202246-55202265 Msa0077980:CDS 35.0%
GAACGCTAATATTTGCTTGA+GGG - chr1_2:55202408-55202427 None:intergenic 35.0%
TGAACGCTAATATTTGCTTG+AGG - chr1_2:55202409-55202428 None:intergenic 35.0%
! AACTCATGTGTTGATCGAAA+AGG + chr1_2:55202513-55202532 Msa0077980:intron 35.0%
!! TTGTGGTTTGTTAACCATCA+GGG + chr1_2:55202557-55202576 Msa0077980:intron 35.0%
ACACTTGAGTGTAAGATCTA+TGG + chr1_2:55202651-55202670 Msa0077980:intron 35.0%
! GTGTAAGATCTATGGTTTGT+TGG + chr1_2:55202659-55202678 Msa0077980:intron 35.0%
!!! GTTGGTTTTACTTTGTTGTC+AGG + chr1_2:55202677-55202696 Msa0077980:intron 35.0%
ATGATTAGAATCATGAGCAG+TGG + chr1_2:55202728-55202747 Msa0077980:intron 35.0%
ACTATAGCAGCAATGAAGAT+TGG - chr1_2:55202827-55202846 None:intergenic 35.0%
! CTTTAAGGACTTACATCTAG+AGG + chr1_2:55202865-55202884 Msa0077980:intron 35.0%
!! ATGTGTACATTGCTTTTGAG+AGG + chr1_2:55202940-55202959 Msa0077980:intron 35.0%
CCCCTTAACTTCTATCAATA+AGG - chr1_2:55203125-55203144 None:intergenic 35.0%
CCACAAAATTAAAGATGCTG+TGG - chr1_2:55203231-55203250 None:intergenic 35.0%
!! CCACAGCATCTTTAATTTTG+TGG + chr1_2:55203228-55203247 Msa0077980:intron 35.0%
! ATTTTGTGGAGTTTAAGTCG+TGG + chr1_2:55203242-55203261 Msa0077980:intron 35.0%
CCTCAAGAAAATATTCTCCA+AGG - chr1_2:55203316-55203335 None:intergenic 35.0%
! CCTTGGAGAATATTTTCTTG+AGG + chr1_2:55203313-55203332 Msa0077980:intron 35.0%
ACCATCAATCCAAATGATGT+TGG + chr1_2:55203356-55203375 Msa0077980:intron 35.0%
ACCAACATCATTTGGATTGA+TGG - chr1_2:55203360-55203379 None:intergenic 35.0%
AGATTGCTACCAACATCATT+TGG - chr1_2:55203368-55203387 None:intergenic 35.0%
!!! GTCATACACTTGTTTTGTCT+TGG - chr1_2:55203419-55203438 None:intergenic 35.0%
AGTGGATCAGCAATAAAAGA+TGG + chr1_2:55203466-55203485 Msa0077980:intron 35.0%
ATATAATACGGCAAGAGAGT+TGG - chr1_2:55203561-55203580 None:intergenic 35.0%
!! ATAGGCTTCTCTATTTCTGA+TGG - chr1_2:55203590-55203609 None:intergenic 35.0%
AGCGTAATAGATTAATTGGG+TGG - chr1_2:55203689-55203708 None:intergenic 35.0%
GGTACAATATAAGATACCCT+CGG + chr1_2:55203798-55203817 Msa0077980:intron 35.0%
GTACAATATAAGATACCCTC+GGG + chr1_2:55203799-55203818 Msa0077980:intron 35.0%
! ATGTTTTCACCAAGTCTCTA+AGG - chr1_2:55203825-55203844 None:intergenic 35.0%
CCATGAGAAGATTGTTTATG+AGG - chr1_2:55203897-55203916 None:intergenic 35.0%
CCTCATAAACAATCTTCTCA+TGG + chr1_2:55203894-55203913 Msa0077980:intron 35.0%
TTTATTCCAACGTGGACATA+CGG - chr1_2:55203950-55203969 None:intergenic 35.0%
TTAAAAAAATTTGGCAGGCC+AGG - chr1_2:55204189-55204208 None:intergenic 35.0%
!!! TGGCCTGCCAAATTTTTTTA+AGG + chr1_2:55204188-55204207 Msa0077980:intron 35.0%
AGGCCTTAAAAAAATTTGGC+AGG - chr1_2:55204194-55204213 None:intergenic 35.0%
!!! ATTTTTTTAAGGCCTAAGCC+TGG + chr1_2:55204199-55204218 Msa0077980:intron 35.0%
CTAAAAAGTAAGCCTATGAC+AGG - chr1_2:55204232-55204251 None:intergenic 35.0%
!!! CTGTCATAGGCTTACTTTTT+AGG + chr1_2:55204230-55204249 Msa0077980:intron 35.0%
GATCACATTGCTTATTTAGC+AGG - chr1_2:55204288-55204307 None:intergenic 35.0%
! ATAGGCTTCTAAAAAAGCCT+AGG + chr1_2:55204625-55204644 Msa0077980:intron 35.0%
TTCTTAAATAGAGAAGGCCT+AGG - chr1_2:55204645-55204664 None:intergenic 35.0%
!!! AGTCTCTTTTGAGATGACTA+GGG - chr1_2:55204736-55204755 None:intergenic 35.0%
!!! AAGTCTCTTTTGAGATGACT+AGG - chr1_2:55204737-55204756 None:intergenic 35.0%
TCATCTCAAAAGAGACTTGT+TGG + chr1_2:55204739-55204758 Msa0077980:intron 35.0%
ATGTAGTAAGATCCATATCC+CGG + chr1_2:55204786-55204805 Msa0077980:intron 35.0%
ATTGCTAGATCTAGTGAAAC+CGG - chr1_2:55204808-55204827 None:intergenic 35.0%
GGAGAGAGAATCTAATTTCA+TGG - chr1_2:55204851-55204870 None:intergenic 35.0%
!! CTCGGCTATTATTAACTTGT+AGG - chr1_2:55204872-55204891 None:intergenic 35.0%
AATATGCAACATTATCAGCG+TGG + chr1_2:55204911-55204930 Msa0077980:intron 35.0%
GTATATCAAAGGGTCTCAAA+GGG - chr1_2:55204963-55204982 None:intergenic 35.0%
GAATCCTGAGGTATATCAAA+GGG - chr1_2:55204973-55204992 None:intergenic 35.0%
TGAATCCTGAGGTATATCAA+AGG - chr1_2:55204974-55204993 None:intergenic 35.0%
TCCACAACAATGATGACAAA+GGG + chr1_2:55205040-55205059 Msa0077980:intron 35.0%
ATATCATGACATATCAGGAG+GGG - chr1_2:55205143-55205162 None:intergenic 35.0%
!! TAAGCTCATTGGTTCACATA+CGG - chr1_2:55205178-55205197 None:intergenic 35.0%
GATTTATGCTGTAAGCTCAT+TGG - chr1_2:55205189-55205208 None:intergenic 35.0%
TGATCTTTGCTTGCGTAATT+TGG + chr1_2:55205259-55205278 Msa0077980:intron 35.0%
GATCTTTGCTTGCGTAATTT+GGG + chr1_2:55205260-55205279 Msa0077980:intron 35.0%
GTAATTTGGGTCTTTACACT+CGG + chr1_2:55205273-55205292 Msa0077980:intron 35.0%
TATTTATACAGAGCTGAAGC+TGG - chr1_2:55205364-55205383 None:intergenic 35.0%
CAGTTCGATCATGAAAACAT+TGG - chr1_2:55205490-55205509 None:intergenic 35.0%
!! AATTATTTTTCCCCTTGGAC+AGG - chr1_2:55205613-55205632 None:intergenic 35.0%
! CAGTCTGACGAAATTTTGTT+AGG - chr1_2:55205664-55205683 None:intergenic 35.0%
AAGAACCAAGATTTGTAGCA+TGG - chr1_2:55205753-55205772 None:intergenic 35.0%
ATCATGGTGTGAAAACTATG+TGG - chr1_2:55205803-55205822 None:intergenic 35.0%
!! AGTGAGTAGAATTTGTTGGA+TGG + chr1_2:55206035-55206054 Msa0077980:intron 35.0%
ATTGTTGTCGTAGTTAGGTT+AGG + chr1_2:55206059-55206078 Msa0077980:intron 35.0%
TTGTTGTCGTAGTTAGGTTA+GGG + chr1_2:55206060-55206079 Msa0077980:intron 35.0%
GATTTATGAGCCCAAACATT+TGG + chr1_2:55206171-55206190 Msa0077980:intron 35.0%
!!! TTGGTGGTCATTTTTTAGTG+GGG + chr1_2:55206190-55206209 Msa0077980:intron 35.0%
TACTTCTCTTGTAAGAAGCT+TGG + chr1_2:55206372-55206391 Msa0077980:intron 35.0%
TGGTGAGTGGTAGTAAATAA+AGG - chr1_2:55206409-55206428 None:intergenic 35.0%
! TGGGTGTTTCTAAATGAACA+TGG + chr1_2:55206456-55206475 Msa0077980:intron 35.0%
! GGGTGTTTCTAAATGAACAT+GGG + chr1_2:55206457-55206476 Msa0077980:intron 35.0%
! TTTGTCATTCATTTCAGGTC+TGG + chr1_2:55207082-55207101 Msa0077980:intron 35.0%
! TTGTCATTCATTTCAGGTCT+GGG + chr1_2:55207083-55207102 Msa0077980:intron 35.0%
ATCCTTCATTAAAGAGATCC+TGG - chr1_2:55207202-55207221 None:intergenic 35.0%
! CATCAATTAGCCTATCTGTA+TGG + chr1_2:55207704-55207723 Msa0077980:three_prime_UTR 35.0%
GCTATCATATAAAGCCAACA+AGG - chr1_2:55207743-55207762 None:intergenic 35.0%
! GGCTTTATATGATAGCGAAT+TGG + chr1_2:55207747-55207766 Msa0077980:three_prime_UTR 35.0%
!! CCGATTTGATTTGGCGATTT+GGG - chr1_2:55201803-55201822 None:intergenic 40.0%
CCCAAATCGCCAAATCAAAT+CGG + chr1_2:55201800-55201819 Msa0077980:five_prime_UTR 40.0%
!! ACCGATTTGATTTGGCGATT+TGG - chr1_2:55201804-55201823 None:intergenic 40.0%
GAAAGAAAAGGATCGAACCT+GGG - chr1_2:55201873-55201892 None:intergenic 40.0%
AGAAAGAAAAGGATCGAACC+TGG - chr1_2:55201874-55201893 None:intergenic 40.0%
GTTGATTAAAAGGGAGGATG+GGG + chr1_2:55202059-55202078 Msa0077980:exon 40.0%
TTGATTAAAAGGGAGGATGG+GGG + chr1_2:55202060-55202079 Msa0077980:exon 40.0%
GTTACTACTAACCCTACTGT+TGG + chr1_2:55202202-55202221 Msa0077980:CDS 40.0%
TGTTGATCTTGCTTGCTTCT+AGG + chr1_2:55202309-55202328 Msa0077980:intron 40.0%
GTTGATCTTGCTTGCTTCTA+GGG + chr1_2:55202310-55202329 Msa0077980:intron 40.0%
!! GTTGTGGTTTGTTAACCATC+AGG + chr1_2:55202556-55202575 Msa0077980:intron 40.0%
TAACCATCAGGGAGAAGAAT+TGG + chr1_2:55202568-55202587 Msa0077980:intron 40.0%
ATACCAATTCTTCTCCCTGA+TGG - chr1_2:55202574-55202593 None:intergenic 40.0%
TCAGGGAGAAGAATTGGTAT+AGG + chr1_2:55202574-55202593 Msa0077980:intron 40.0%
CAAAGACAAGGAGGAAACTA+TGG + chr1_2:55202620-55202639 Msa0077980:intron 40.0%
AATCATGAGCAGTGGCTATA+GGG + chr1_2:55202736-55202755 Msa0077980:intron 40.0%
TGCTATAGTTGCAACCTGAT+TGG + chr1_2:55202838-55202857 Msa0077980:intron 40.0%
GGTAGTCCAAAACAGTTCAA+TGG - chr1_2:55202974-55202993 None:intergenic 40.0%
TTGGACTACCATGAGATGAA+TGG + chr1_2:55202984-55203003 Msa0077980:intron 40.0%
AGATGAATGGCCTATACCTT+GGG + chr1_2:55202997-55203016 Msa0077980:intron 40.0%
TGGGATATTATCAGTCACCT+TGG + chr1_2:55203296-55203315 Msa0077980:intron 40.0%
AAGTGTATGACAGTGTTTCC+AGG + chr1_2:55203428-55203447 Msa0077980:intron 40.0%
AATGTCACACTCATCAAGCT+TGG + chr1_2:55203777-55203796 Msa0077980:intron 40.0%
CTGGTCATTGAAGACCATAT+TGG + chr1_2:55204081-55204100 Msa0077980:intron 40.0%
!!! TTACTTTTTAGGCCTGAGTC+TGG + chr1_2:55204241-55204260 Msa0077980:intron 40.0%
AAAAGCCTCTTAGGCCTATT+AGG - chr1_2:55204573-55204592 None:intergenic 40.0%
! CCTATTTAGCTTAAAAGGCC+AGG - chr1_2:55204610-55204629 None:intergenic 40.0%
!! CCTGGCCTTTTAAGCTAAAT+AGG + chr1_2:55204607-55204626 Msa0077980:intron 40.0%
TTTAAGAAAAAAGCCTGGCC+TGG + chr1_2:55204657-55204676 Msa0077980:intron 40.0%
!!! CTTTTGAGATGACTAGGGAT+GGG - chr1_2:55204731-55204750 None:intergenic 40.0%
!!! TCTTTTGAGATGACTAGGGA+TGG - chr1_2:55204732-55204751 None:intergenic 40.0%
TTGCTAGATCTAGTGAAACC+GGG - chr1_2:55204807-55204826 None:intergenic 40.0%
GGATCAGTCTATGAGAAAAG+AGG - chr1_2:55204937-55204956 None:intergenic 40.0%
GGTATATCAAAGGGTCTCAA+AGG - chr1_2:55204964-55204983 None:intergenic 40.0%
ATGCAATAGCTTGAATCCTG+AGG - chr1_2:55204985-55205004 None:intergenic 40.0%
GTCCACAACAATGATGACAA+AGG + chr1_2:55205039-55205058 Msa0077980:intron 40.0%
ACCCTTTGTCATCATTGTTG+TGG - chr1_2:55205044-55205063 None:intergenic 40.0%
CATCTACCATGGTCTGAAAA+GGG + chr1_2:55205114-55205133 Msa0077980:intron 40.0%
!! AAGCTCATTGGTTCACATAC+GGG - chr1_2:55205177-55205196 None:intergenic 40.0%
!! GCTTGATATTTTGGAGGAGA+CGG - chr1_2:55205213-55205232 None:intergenic 40.0%
! ATCAGAATTGTTACTTCGGC+GGG - chr1_2:55205243-55205262 None:intergenic 40.0%
! GATCAGAATTGTTACTTCGG+CGG - chr1_2:55205244-55205263 None:intergenic 40.0%
! GTTTTCATGATCGAACTGAC+TGG + chr1_2:55205492-55205511 Msa0077980:intron 40.0%
!!! CCTGTACCAGTTTTGGAAAA+CGG + chr1_2:55205586-55205605 Msa0077980:intron 40.0%
AAACGATTGAGAGGGACATA+GGG - chr1_2:55205690-55205709 None:intergenic 40.0%
AAAACGATTGAGAGGGACAT+AGG - chr1_2:55205691-55205710 None:intergenic 40.0%
GAGGAAGAAAACGATTGAGA+GGG - chr1_2:55205698-55205717 None:intergenic 40.0%
TGAGGAAGAAAACGATTGAG+AGG - chr1_2:55205699-55205718 None:intergenic 40.0%
AGATTTGTAGCATGGAGGAA+GGG - chr1_2:55205745-55205764 None:intergenic 40.0%
AAGATTTGTAGCATGGAGGA+AGG - chr1_2:55205746-55205765 None:intergenic 40.0%
TTCCTCCATGCTACAAATCT+TGG + chr1_2:55205745-55205764 Msa0077980:intron 40.0%
AACCAAGATTTGTAGCATGG+AGG - chr1_2:55205750-55205769 None:intergenic 40.0%
! CTGTTAAATTTTGCTACGGC+TGG + chr1_2:55205865-55205884 Msa0077980:intron 40.0%
ATGGCATTGTTGTCGTAGTT+AGG + chr1_2:55206054-55206073 Msa0077980:intron 40.0%
TAGTTAGGTTAGGGTTGGAT+TGG + chr1_2:55206069-55206088 Msa0077980:intron 40.0%
!! GTTAGGGTTGGATTGGTTTA+GGG + chr1_2:55206076-55206095 Msa0077980:intron 40.0%
!! TTAGGGTTGGATTGGTTTAG+GGG + chr1_2:55206077-55206096 Msa0077980:intron 40.0%
TTATGAGCCCAAACATTTGG+TGG + chr1_2:55206174-55206193 Msa0077980:intron 40.0%
AAGATCGAAAGCCAAAATCG+TGG - chr1_2:55206429-55206448 None:intergenic 40.0%
!!! TGAGTCCTCTTGTTTTGAAG+AGG + chr1_2:55206540-55206559 Msa0077980:intron 40.0%
!!! GAGTCCTCTTGTTTTGAAGA+GGG + chr1_2:55206541-55206560 Msa0077980:intron 40.0%
!!! TTGGCTGCACTGTGTTTTTT+GGG - chr1_2:55206597-55206616 None:intergenic 40.0%
! ATCGTGCTCCTCAATTTTGT+TGG - chr1_2:55206616-55206635 None:intergenic 40.0%
CATACAATAGCGCTGCTTAT+TGG + chr1_2:55206841-55206860 Msa0077980:intron 40.0%
AATATGTTGCCCATGATGTC+CGG - chr1_2:55207131-55207150 None:intergenic 40.0%
CAATTACAGCATGAGTTCCT+CGG - chr1_2:55207155-55207174 None:intergenic 40.0%
AGCCAGGATCTCTTTAATGA+AGG + chr1_2:55207197-55207216 Msa0077980:CDS 40.0%
!!! GATGAACTTTTCAGGTTGCT+GGG + chr1_2:55207219-55207238 Msa0077980:CDS 40.0%
ACAGCATCAAGGATCATGAT+TGG + chr1_2:55207343-55207362 Msa0077980:CDS 40.0%
TCCATCCAAGACCATCATAA+AGG - chr1_2:55207404-55207423 None:intergenic 40.0%
AATTCATACACACACTAGCC+TGG - chr1_2:55207558-55207577 None:intergenic 40.0%
CAGATAAAAGGAAGTGACCA+AGG - chr1_2:55207669-55207688 None:intergenic 40.0%
GGATGCAGCAAACAGATAAA+AGG - chr1_2:55207681-55207700 None:intergenic 40.0%
CAGATAGGCTAATTGATGAG+AGG - chr1_2:55207702-55207721 None:intergenic 40.0%
! AATTAGCCTATCTGTATGGC+TGG + chr1_2:55207708-55207727 Msa0077980:three_prime_UTR 40.0%
! ATTAGCCTATCTGTATGGCT+GGG + chr1_2:55207709-55207728 Msa0077980:three_prime_UTR 40.0%
CATATAAAGCCAACAAGGCA+AGG - chr1_2:55207738-55207757 None:intergenic 40.0%
GTTGCGATTGCGAAGAGAAT+TGG - chr1_2:55201834-55201853 None:intergenic 45.0%
GGGCAATGATGTCTAGATTC+TGG + chr1_2:55202080-55202099 Msa0077980:CDS 45.0%
! GTTGTTGGATTGGATAACGC+TGG + chr1_2:55202139-55202158 Msa0077980:CDS 45.0%
TATAGGCGGTGACAAAGACA+AGG + chr1_2:55202608-55202627 Msa0077980:intron 45.0%
! ACTTTGTTGTCAGGGTGACA+TGG + chr1_2:55202686-55202705 Msa0077980:intron 45.0%
GAATCATGAGCAGTGGCTAT+AGG + chr1_2:55202735-55202754 Msa0077980:intron 45.0%
TGGCTATAGGGTTTGATCGT+GGG + chr1_2:55202748-55202767 Msa0077980:intron 45.0%
! AACCTGATTGGCCGTCTTTA+AGG + chr1_2:55202850-55202869 Msa0077980:intron 45.0%
GGTATAGGCCATTCATCTCA+TGG - chr1_2:55202995-55203014 None:intergenic 45.0%
GAGATGAATGGCCTATACCT+TGG + chr1_2:55202996-55203015 Msa0077980:intron 45.0%
TTGCTGGGTAAGAGCTAGTT+TGG + chr1_2:55203020-55203039 Msa0077980:intron 45.0%
TTTGTCCCAAATCCTGCTGA+TGG - chr1_2:55203149-55203168 None:intergenic 45.0%
GACAAACGCGATCCCTAATA+TGG + chr1_2:55203163-55203182 Msa0077980:intron 45.0%
GGGACGAACATTGCAATTTG+TGG - chr1_2:55203210-55203229 None:intergenic 45.0%
!! TTGATGGTGCATCAGAAGTC+TGG - chr1_2:55203344-55203363 None:intergenic 45.0%
TGACATTTACACCAGCTTGG+AGG - chr1_2:55203764-55203783 None:intergenic 45.0%
GTGTGACATTTACACCAGCT+TGG - chr1_2:55203767-55203786 None:intergenic 45.0%
! TGTTTGAGCTGCCCTGTTTT+TGG - chr1_2:55203990-55204009 None:intergenic 45.0%
AAACAGGGCAGCTCAAACAA+AGG + chr1_2:55203991-55204010 Msa0077980:intron 45.0%
CTTATCATAGTTGCCTTGCG+AGG + chr1_2:55204038-55204057 Msa0077980:intron 45.0%
TAAGGCTACTGGTCATCTCT+AGG + chr1_2:55204120-55204139 Msa0077980:intron 45.0%
AAGGCTACTGGTCATCTCTA+GGG + chr1_2:55204121-55204140 Msa0077980:intron 45.0%
! TACTGGTCATCTCTAGGGAT+GGG + chr1_2:55204126-55204145 Msa0077980:intron 45.0%
! TCATCTCTAGGGATGGGAAT+AGG + chr1_2:55204132-55204151 Msa0077980:intron 45.0%
CTTATTTAGCAGGCCGTATC+AGG - chr1_2:55204278-55204297 None:intergenic 45.0%
! GGCCTAAGAGGCTTTTTGAA+TGG + chr1_2:55204577-55204596 Msa0077980:intron 45.0%
GGCCATTCAAAAAGCCTCTT+AGG - chr1_2:55204582-55204601 None:intergenic 45.0%
AGATGACTAGGGATGGGAAT+AGG - chr1_2:55204725-55204744 None:intergenic 45.0%
GATCTAGTGAAACCGGGATA+TGG - chr1_2:55204801-55204820 None:intergenic 45.0%
AAATGCAGATTGGGTCAGCT+CGG - chr1_2:55204890-55204909 None:intergenic 45.0%
TCAAAGGGTCTCAAAGGGAA+AGG - chr1_2:55204958-55204977 None:intergenic 45.0%
GAGACCCTTTGATATACCTC+AGG + chr1_2:55204966-55204985 Msa0077980:intron 45.0%
GGGTATGTCAAGTCTAGTCA+CGG + chr1_2:55205060-55205079 Msa0077980:intron 45.0%
GGTAGATGGTGAAGATTGGT+TGG - chr1_2:55205102-55205121 None:intergenic 45.0%
CCATGGTAGATGGTGAAGAT+TGG - chr1_2:55205106-55205125 None:intergenic 45.0%
CCAATCTTCACCATCTACCA+TGG + chr1_2:55205103-55205122 Msa0077980:intron 45.0%
! CCTTTTCAGACCATGGTAGA+TGG - chr1_2:55205116-55205135 None:intergenic 45.0%
CCATCTACCATGGTCTGAAA+AGG + chr1_2:55205113-55205132 Msa0077980:intron 45.0%
! TCAGAATTGTTACTTCGGCG+GGG - chr1_2:55205242-55205261 None:intergenic 45.0%
ATCGAACTGACTGGTAGAAC+CGG + chr1_2:55205501-55205520 Msa0077980:intron 45.0%
! CCGTTTTCCAAAACTGGTAC+AGG - chr1_2:55205589-55205608 None:intergenic 45.0%
! ACAGGACCGTTTTCCAAAAC+TGG - chr1_2:55205595-55205614 None:intergenic 45.0%
GATTTGTAGCATGGAGGAAG+GGG - chr1_2:55205744-55205763 None:intergenic 45.0%
GTTGAAGGTTTGCGATCTGT+TGG + chr1_2:55205967-55205986 Msa0077980:intron 45.0%
TGTCGTAGTTAGGTTAGGGT+TGG + chr1_2:55206064-55206083 Msa0077980:intron 45.0%
!! GGTTAGGGTTGGATTGGTTT+AGG + chr1_2:55206075-55206094 Msa0077980:intron 45.0%
TCATGATCCAGAAGCTTCAG+TGG + chr1_2:55206313-55206332 Msa0077980:intron 45.0%
GATCAAACCACTGAAGCTTC+TGG - chr1_2:55206323-55206342 None:intergenic 45.0%
AGCTTCAGTGGTTTGATCTC+TGG + chr1_2:55206325-55206344 Msa0077980:intron 45.0%
CTTGTAAGAAGCTTGGCTAC+AGG + chr1_2:55206379-55206398 Msa0077980:intron 45.0%
! ACTACCACTCACCACGATTT+TGG + chr1_2:55206415-55206434 Msa0077980:intron 45.0%
AAAGCCAAAATCGTGGTGAG+TGG - chr1_2:55206422-55206441 None:intergenic 45.0%
GCTTTCGATCTTGCTTGCTT+GGG + chr1_2:55206437-55206456 Msa0077980:intron 45.0%
!!! TGGCTGCACTGTGTTTTTTG+GGG - chr1_2:55206596-55206615 None:intergenic 45.0%
!!! GTTGGCTGCACTGTGTTTTT+TGG - chr1_2:55206598-55206617 None:intergenic 45.0%
CAGTGCAGCCAACAAAATTG+AGG + chr1_2:55206605-55206624 Msa0077980:intron 45.0%
GTCCCACTTTCCACAATACA+CGG + chr1_2:55206780-55206799 Msa0077980:intron 45.0%
TCCCACTTTCCACAATACAC+GGG + chr1_2:55206781-55206800 Msa0077980:intron 45.0%
! TCATTTCAGGTCTGGGATCT+TGG + chr1_2:55207090-55207109 Msa0077980:intron 45.0%
AAGAAAGACTCCGGACATCA+TGG + chr1_2:55207118-55207137 Msa0077980:CDS 45.0%
AGAAAGACTCCGGACATCAT+GGG + chr1_2:55207119-55207138 Msa0077980:CDS 45.0%
TCATGGGCAACATATTACCG+AGG + chr1_2:55207135-55207154 Msa0077980:CDS 45.0%
!!! GGATGAACTTTTCAGGTTGC+TGG + chr1_2:55207218-55207237 Msa0077980:CDS 45.0%
! AGAGCATCAGTGATTTCAGC+AGG - chr1_2:55207315-55207334 None:intergenic 45.0%
! TCTGTCACTTCACAGCATCA+AGG + chr1_2:55207332-55207351 Msa0077980:CDS 45.0%
! GCCTTTATGATGGTCTTGGA+TGG + chr1_2:55207400-55207419 Msa0077980:CDS 45.0%
TAACCGGCAAAGCATGATGT+GGG + chr1_2:55207436-55207455 Msa0077980:exon 45.0%
AAACCCACATCATGCTTTGC+CGG - chr1_2:55207442-55207461 None:intergenic 45.0%
AAAGCATGATGTGGGTTTGC+TGG + chr1_2:55207444-55207463 Msa0077980:exon 45.0%
!! TGTGGGTTTGCTGGAAACTA+AGG + chr1_2:55207453-55207472 Msa0077980:three_prime_UTR 45.0%
!! TAATTAGTTATTAATTAATT+TGG + chr1_2:55202020-55202039 Msa0077980:five_prime_UTR 5.0%
!! AATTAGTTATTAATTAATTT+GGG + chr1_2:55202021-55202040 Msa0077980:five_prime_UTR 5.0%
AGAAAAGGATCGAACCTGGG+AGG - chr1_2:55201870-55201889 None:intergenic 50.0%
CGACGTTGCTACCAACAGTA+GGG - chr1_2:55202216-55202235 None:intergenic 50.0%
TCGACGTTGCTACCAACAGT+AGG - chr1_2:55202217-55202236 None:intergenic 50.0%
GTGGCTATAGGGTTTGATCG+TGG + chr1_2:55202747-55202766 Msa0077980:intron 50.0%
GGCTATAGGGTTTGATCGTG+GGG + chr1_2:55202749-55202768 Msa0077980:intron 50.0%
GTCCTTAAAGACGGCCAATC+AGG - chr1_2:55202855-55202874 None:intergenic 50.0%
TACCCAGCAACCCAAGGTAT+AGG - chr1_2:55203010-55203029 None:intergenic 50.0%
AAGTTAAGGGGTCCATCAGC+AGG + chr1_2:55203134-55203153 Msa0077980:intron 50.0%
!! GGAGATGTGCATTTTGGCAG+AGG + chr1_2:55203184-55203203 Msa0077980:intron 50.0%
TGCTGATCCACTGAGTCATG+AGG - chr1_2:55203458-55203477 None:intergenic 50.0%
TGAAGTCCGTATGTCCACGT+TGG + chr1_2:55203941-55203960 Msa0077980:intron 50.0%
! CTACTGGTCATCTCTAGGGA+TGG + chr1_2:55204125-55204144 Msa0077980:intron 50.0%
TCTAGGGATGGGAATAGGCT+AGG + chr1_2:55204137-55204156 Msa0077980:intron 50.0%
! GGCCTTCTGAAAGCCTGATA+CGG + chr1_2:55204262-55204281 Msa0077980:intron 50.0%
CTTCAATAGGCCGGCCTAAT+AGG + chr1_2:55204556-55204575 Msa0077980:intron 50.0%
! GAGGCTTTTTGAATGGCCTG+TGG + chr1_2:55204584-55204603 Msa0077980:intron 50.0%
! TTTTTGAATGGCCTGTGGCC+TGG + chr1_2:55204589-55204608 Msa0077980:intron 50.0%
! GGGAATCCCTTTTCAGACCA+TGG - chr1_2:55205123-55205142 None:intergenic 50.0%
TGTCCAGGAAAAGTTGCGTC+AGG - chr1_2:55205460-55205479 None:intergenic 50.0%
TCGAACTGACTGGTAGAACC+GGG + chr1_2:55205502-55205521 Msa0077980:intron 50.0%
!! ACTGGCTTGGAACCAAGTTC+GGG - chr1_2:55205529-55205548 None:intergenic 50.0%
!! GACTGGCTTGGAACCAAGTT+CGG - chr1_2:55205530-55205549 None:intergenic 50.0%
AACTTGGTTCCAAGCCAGTC+AGG + chr1_2:55205530-55205549 Msa0077980:intron 50.0%
! TTTAGATGGCCTGACTGGCT+TGG - chr1_2:55205542-55205561 None:intergenic 50.0%
AGCTGTTTAGATGGCCTGAC+TGG - chr1_2:55205547-55205566 None:intergenic 50.0%
! CGCAGAACCTGTACCAGTTT+TGG + chr1_2:55205579-55205598 Msa0077980:intron 50.0%
TTGGAAAACGGTCCTGTCCA+AGG + chr1_2:55205598-55205617 Msa0077980:intron 50.0%
TGGAAAACGGTCCTGTCCAA+GGG + chr1_2:55205599-55205618 Msa0077980:intron 50.0%
GACGACAATGACATGCTGAG+GGG - chr1_2:55205781-55205800 None:intergenic 50.0%
GGACGACAATGACATGCTGA+GGG - chr1_2:55205782-55205801 None:intergenic 50.0%
TGGACGACAATGACATGCTG+AGG - chr1_2:55205783-55205802 None:intergenic 50.0%
TTTGTTCAACCTGGGCAGAG+TGG - chr1_2:55205827-55205846 None:intergenic 50.0%
GGTTTGCGATCTGTTGGTGT+TGG + chr1_2:55205973-55205992 Msa0077980:intron 50.0%
GGCTTTCGATCTTGCTTGCT+TGG + chr1_2:55206436-55206455 Msa0077980:intron 50.0%
CCTGCCCTCTTCAAAACAAG+AGG - chr1_2:55206548-55206567 None:intergenic 50.0%
!!! CCTCTTGTTTTGAAGAGGGC+AGG + chr1_2:55206545-55206564 Msa0077980:intron 50.0%
CCCCGTGTATTGTGGAAAGT+GGG - chr1_2:55206785-55206804 None:intergenic 50.0%
CCCACTTTCCACAATACACG+GGG + chr1_2:55206782-55206801 Msa0077980:intron 50.0%
ACCCCGTGTATTGTGGAAAG+TGG - chr1_2:55206786-55206805 None:intergenic 50.0%
TCCACAATACACGGGGTAGT+TGG + chr1_2:55206789-55206808 Msa0077980:intron 50.0%
ACCAACTACCCCGTGTATTG+TGG - chr1_2:55206793-55206812 None:intergenic 50.0%
! TTTCAGGTCTGGGATCTTGG+CGG + chr1_2:55207093-55207112 Msa0077980:intron 50.0%
! TTGGCGGACAAGAAAGACTC+CGG + chr1_2:55207109-55207128 Msa0077980:CDS 50.0%
ATAAAGGCCGTCTCCTGAGA+GGG - chr1_2:55207388-55207407 None:intergenic 50.0%
TCAGGAGACGGCCTTTATGA+TGG + chr1_2:55207390-55207409 Msa0077980:CDS 50.0%
GACGGCCTTTATGATGGTCT+TGG + chr1_2:55207396-55207415 Msa0077980:CDS 50.0%
!! GATGGTCTTGGATGGATTGC+CGG + chr1_2:55207408-55207427 Msa0077980:CDS 50.0%
!! ATGGTCTTGGATGGATTGCC+GGG + chr1_2:55207409-55207428 Msa0077980:CDS 50.0%
GTAACCGGCAAAGCATGATG+TGG + chr1_2:55207435-55207454 Msa0077980:exon 50.0%
GGAAACCCAGCCATACAGAT+AGG - chr1_2:55207717-55207736 None:intergenic 50.0%
AGGCGGTGACAAAGACAAGG+AGG + chr1_2:55202611-55202630 Msa0077980:intron 55.0%
GGGAGCAATGCAAGTAGAGC+TGG + chr1_2:55202769-55202788 Msa0077980:intron 55.0%
! TGGCCTATACCTTGGGTTGC+TGG + chr1_2:55203004-55203023 Msa0077980:intron 55.0%
! GGCCTATACCTTGGGTTGCT+GGG + chr1_2:55203005-55203024 Msa0077980:intron 55.0%
AGCTCTTACCCAGCAACCCA+AGG - chr1_2:55203016-55203035 None:intergenic 55.0%
AGGGGTCCATCAGCAGGATT+TGG + chr1_2:55203140-55203159 Msa0077980:intron 55.0%
GGGGTCCATCAGCAGGATTT+GGG + chr1_2:55203141-55203160 Msa0077980:intron 55.0%
ACTGAGTCATGAGGCATGCC+TGG - chr1_2:55203449-55203468 None:intergenic 55.0%
AGGCATGCCTCATGACTCAG+TGG + chr1_2:55203448-55203467 Msa0077980:intron 55.0%
CTCAACACTCTCCTCCAAGC+TGG + chr1_2:55203750-55203769 Msa0077980:intron 55.0%
!! ACCAAGTCTCTAAGGCCCGA+GGG - chr1_2:55203817-55203836 None:intergenic 55.0%
AGGCCTTGCAAAGCCTAGCT+CGG - chr1_2:55204163-55204182 None:intergenic 55.0%
AAATTTGGCAGGCCAGGCTC+AGG - chr1_2:55204183-55204202 None:intergenic 55.0%
GCTTTCAGAAGGCCAGACTC+AGG - chr1_2:55204256-55204275 None:intergenic 55.0%
GGCCGTATCAGGCTTTCAGA+AGG - chr1_2:55204267-55204286 None:intergenic 55.0%
GCCTCTTAGGCCTATTAGGC+CGG - chr1_2:55204569-55204588 None:intergenic 55.0%
AGCTTAAAAGGCCAGGCCAC+AGG - chr1_2:55204603-55204622 None:intergenic 55.0%
ACTAGGGATGGGAATAGGCC+AGG - chr1_2:55204720-55204739 None:intergenic 55.0%
! GGACCTGACGCAACTTTTCC+TGG + chr1_2:55205454-55205473 Msa0077980:intron 55.0%
TTGGAACCAAGTTCGGGTCC+CGG - chr1_2:55205523-55205542 None:intergenic 55.0%
GGAAAACGGTCCTGTCCAAG+GGG + chr1_2:55205600-55205619 Msa0077980:intron 55.0%
ACAGTGAGCAAGGCAGTGTG+AGG - chr1_2:55205717-55205736 None:intergenic 55.0%
AAGGGGAACGACAGTGAGCA+AGG - chr1_2:55205727-55205746 None:intergenic 55.0%
CAATGACATGCTGAGGGGTG+TGG - chr1_2:55205776-55205795 None:intergenic 55.0%
GCTACGGCTGGAATGCATGT+AGG + chr1_2:55205877-55205896 Msa0077980:intron 55.0%
TCGACAGCAGTGATAGAGCC+AGG + chr1_2:55207181-55207200 Msa0077980:CDS 55.0%
CATAAAGGCCGTCTCCTGAG+AGG - chr1_2:55207389-55207408 None:intergenic 55.0%
CCAAGGTGCATGCAATGCAG+AGG - chr1_2:55207652-55207671 None:intergenic 55.0%
CCTCTGCATTGCATGCACCT+TGG + chr1_2:55207649-55207668 Msa0077980:three_prime_UTR 55.0%
GCTGGGTTTCCTTGCCTTGT+TGG + chr1_2:55207726-55207745 Msa0077980:three_prime_UTR 55.0%
CACAGACAACGCTACCTCCC+AGG + chr1_2:55201853-55201872 Msa0077980:five_prime_UTR 60.0%
ACCCTCGGGCCTTAGAGACT+TGG + chr1_2:55203813-55203832 Msa0077980:intron 60.0%
!! CACCAAGTCTCTAAGGCCCG+AGG - chr1_2:55203818-55203837 None:intergenic 60.0%
GGAATAGGCTAGGCCGAGCT+AGG + chr1_2:55204147-55204166 Msa0077980:intron 60.0%
AGGCCGAGCTAGGCTTTGCA+AGG + chr1_2:55204157-55204176 Msa0077980:intron 60.0%
TAAGGCCTAAGCCTGGCCTG+CGG + chr1_2:55204206-55204225 Msa0077980:intron 60.0%
GTAAGCCTATGACAGGCCGC+AGG - chr1_2:55204225-55204244 None:intergenic 60.0%
GCCGGCCTAATAGGCCTAAG+AGG + chr1_2:55204565-55204584 Msa0077980:intron 60.0%
CCTACGGCCTAACCTACGAC+AGG - chr1_2:55204683-55204702 None:intergenic 60.0%
CCTGTCGTAGGTTAGGCCGT+AGG + chr1_2:55204680-55204699 Msa0077980:intron 60.0%
GTAGAACCGGGACCCGAACT+TGG + chr1_2:55205514-55205533 Msa0077980:intron 60.0%
ACCATGATGCCACTCTGCCC+AGG + chr1_2:55205815-55205834 Msa0077980:intron 60.0%
ACCTGGGCAGAGTGGCATCA+TGG - chr1_2:55205819-55205838 None:intergenic 60.0%
TGGATTGCCGGGCGAGTAAC+CGG + chr1_2:55207420-55207439 Msa0077980:CDS 60.0%
! TGCTTTGCCGGTTACTCGCC+CGG - chr1_2:55207430-55207449 None:intergenic 60.0%
GGCTTTGCAAGGCCTGAGCC+TGG + chr1_2:55204168-55204187 Msa0077980:intron 65.0%
AACCTACGACAGGCCAGGCC+AGG - chr1_2:55204673-55204692 None:intergenic 65.0%
GGCCTGGCCTGTCGTAGGTT+AGG + chr1_2:55204673-55204692 Msa0077980:intron 65.0%
GGCCTAACCTACGACAGGCC+AGG - chr1_2:55204678-55204697 None:intergenic 65.0%
GTTAGGCCGTAGGCCCCTGT+AGG + chr1_2:55204690-55204709 Msa0077980:intron 65.0%
ATAGGCCAGGCCGGCCTACA+GGG - chr1_2:55204707-55204726 None:intergenic 65.0%
AATAGGCCAGGCCGGCCTAC+AGG - chr1_2:55204708-55204727 None:intergenic 65.0%
GGGATGGGAATAGGCCAGGC+CGG - chr1_2:55204716-55204735 None:intergenic 65.0%
CAAGCTTGCAGCGCCCTCTC+AGG + chr1_2:55207372-55207391 Msa0077980:CDS 65.0%
TGCAGCGCCCTCTCAGGAGA+CGG + chr1_2:55207378-55207397 Msa0077980:CDS 65.0%
ACAGGCCGCAGGCCAGGCTT+AGG - chr1_2:55204214-55204233 None:intergenic 70.0%
CCTATGACAGGCCGCAGGCC+AGG - chr1_2:55204220-55204239 None:intergenic 70.0%
CCTGGCCTGCGGCCTGTCAT+AGG + chr1_2:55204217-55204236 Msa0077980:intron 70.0%
AGCCTGGCCTGGCCTGTCGT+AGG + chr1_2:55204668-55204687 Msa0077980:intron 70.0%
TAGGCCAGGCCGGCCTACAG+GGG - chr1_2:55204706-55204725 None:intergenic 70.0%
GGCCGTAGGCCCCTGTAGGC+CGG + chr1_2:55204694-55204713 Msa0077980:intron 75.0%
GGCCGGCCTACAGGGGCCTA+CGG - chr1_2:55204699-55204718 None:intergenic 75.0%
TAGGCCCCTGTAGGCCGGCC+TGG + chr1_2:55204699-55204718 Msa0077980:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 55201723 55207791 55201723 ID=Msa0077980;Name=Msa0077980
chr1_2 mRNA 55201723 55207791 55201723 ID=Msa0077980-mRNA-1;Parent=Msa0077980;Name=Msa0077980-mRNA-1;_AED=0.03;_eAED=0.03;_QI=215|1|1|1|0.5|0.33|3|339|181
chr1_2 exon 55201723 55201874 55201723 ID=Msa0077980-mRNA-1:exon:17190;Parent=Msa0077980-mRNA-1
chr1_2 exon 55202013 55202267 55202013 ID=Msa0077980-mRNA-1:exon:17191;Parent=Msa0077980-mRNA-1
chr1_2 exon 55207099 55207791 55207099 ID=Msa0077980-mRNA-1:exon:17192;Parent=Msa0077980-mRNA-1
chr1_2 five_prime_UTR 55201723 55201874 55201723 ID=Msa0077980-mRNA-1:five_prime_utr;Parent=Msa0077980-mRNA-1
chr1_2 five_prime_UTR 55202013 55202075 55202013 ID=Msa0077980-mRNA-1:five_prime_utr;Parent=Msa0077980-mRNA-1
chr1_2 CDS 55202076 55202267 55202076 ID=Msa0077980-mRNA-1:cds;Parent=Msa0077980-mRNA-1
chr1_2 CDS 55207099 55207452 55207099 ID=Msa0077980-mRNA-1:cds;Parent=Msa0077980-mRNA-1
chr1_2 three_prime_UTR 55207453 55207791 55207453 ID=Msa0077980-mRNA-1:three_prime_utr;Parent=Msa0077980-mRNA-1
Gene Sequence

>Msa0077980

ATGGGGGCAATGATGTCTAGATTCTGGTTCATGTTATTCCCTGCTAAAGAGTATAAGATTGTTGTTGTTGGATTGGATAACGCTGGTAAAACTACCACTCTTTATAAATTGCATCTTGGTGAGGTTGTTACTACTAACCCTACTGTTGGTAGCAACGTCGAAGAGCTCGTCTACAAAAACATTCGATTCGAGGTCTGGGATCTTGGCGGACAAGAAAGACTCCGGACATCATGGGCAACATATTACCGAGGAACTCATGCTGTAATTGCAGTGATCGACAGCAGTGATAGAGCCAGGATCTCTTTAATGAAGGATGAACTTTTCAGGTTGCTGGGTCATGAAGATTTACAACATTCAGTCATCCTTGTCTTTGCTAATAAACAAGATATCAAGGATGCTATGACTCCTGCTGAAATCACTGATGCTCTGTCACTTCACAGCATCAAGGATCATGATTGGCATATACAAGCTTGCAGCGCCCTCTCAGGAGACGGCCTTTATGATGGTCTTGGATGGATTGCCGGGCGAGTAACCGGCAAAGCATGA
Protein sequence

>Msa0077980

MGAMMSRFWFMLFPAKEYKIVVVGLDNAGKTTTLYKLHLGEVVTTNPTVGSNVEELVYKNIRFEVWDLGGQERLRTSWATYYRGTHAVIAVIDSSDRARISLMKDELFRLLGHEDLQHSVILVFANKQDIKDAMTPAEITDALSLHSIKDHDWHIQACSALSGDGLYDGLGWIAGRVTGKA*