Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511380 | XP_003601269.1 | 96.024 | 327 | 10 | 1 | 1 | 324 | 1 | 327 | 0.0 | 645 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511380 | sp|Q9ZUD9|SRO2_ARATH | 38.214 | 280 | 160 | 3 | 47 | 314 | 45 | 323 | 9.66e-63 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511380 | G7J5G4 | 96.024 | 327 | 10 | 1 | 1 | 324 | 1 | 327 | 0.0 | 645 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021400 | Msa0511380 | 0.843814 | 1.111344e-58 | -8.615850e-47 |
| Msa0029700 | Msa0511380 | 0.850780 | 1.360763e-60 | -8.615850e-47 |
| Msa0036560 | Msa0511380 | -0.803257 | 3.800958e-49 | -8.615850e-47 |
| Msa0064960 | Msa0511380 | 0.859876 | 3.052614e-63 | -8.615850e-47 |
| Msa0072440 | Msa0511380 | 0.805567 | 1.254374e-49 | -8.615850e-47 |
| Msa0080020 | Msa0511380 | 0.856109 | 4.016773e-62 | -8.615850e-47 |
| Msa0082410 | Msa0511380 | 0.822476 | 2.321053e-53 | -8.615850e-47 |
| Msa0097470 | Msa0511380 | -0.803577 | 3.261718e-49 | -8.615850e-47 |
| Msa0100200 | Msa0511380 | 0.823902 | 1.078332e-53 | -8.615850e-47 |
| Msa0110240 | Msa0511380 | 0.842461 | 2.550358e-58 | -8.615850e-47 |
| Msa0120860 | Msa0511380 | 0.818829 | 1.597660e-52 | -8.615850e-47 |
| Msa0124960 | Msa0511380 | 0.847873 | 8.780235e-60 | -8.615850e-47 |
| Msa0128030 | Msa0511380 | 0.809611 | 1.737274e-50 | -8.615850e-47 |
| Msa0138340 | Msa0511380 | -0.804893 | 1.735597e-49 | -8.615850e-47 |
| Msa0147960 | Msa0511380 | -0.803716 | 3.052732e-49 | -8.615850e-47 |
| Msa0154730 | Msa0511380 | 0.847805 | 9.163861e-60 | -8.615850e-47 |
| Msa0156530 | Msa0511380 | 0.800464 | 1.423924e-48 | -8.615850e-47 |
| Msa0186200 | Msa0511380 | 0.809538 | 1.800525e-50 | -8.615850e-47 |
| Msa0191260 | Msa0511380 | 0.808515 | 2.981974e-50 | -8.615850e-47 |
| Msa0235000 | Msa0511380 | 0.802121 | 6.519890e-49 | -8.615850e-47 |
| Msa0238140 | Msa0511380 | 0.823025 | 1.729279e-53 | -8.615850e-47 |
| Msa0369660 | Msa0511380 | 0.802712 | 4.926433e-49 | -8.615850e-47 |
| Msa0383930 | Msa0511380 | 0.803994 | 2.672843e-49 | -8.615850e-47 |
| Msa0427850 | Msa0511380 | 0.828609 | 8.175568e-55 | -8.615850e-47 |
| Msa0434140 | Msa0511380 | 0.833528 | 5.064960e-56 | -8.615850e-47 |
| Msa0434370 | Msa0511380 | 0.809693 | 1.667758e-50 | -8.615850e-47 |
| Msa0465420 | Msa0511380 | 0.936075 | 3.096348e-97 | -8.615850e-47 |
| Msa0474080 | Msa0511380 | 0.820146 | 8.001551e-53 | -8.615850e-47 |
| Msa0477660 | Msa0511380 | 0.814568 | 1.441800e-51 | -8.615850e-47 |
| Msa0482360 | Msa0511380 | 0.810846 | 9.407472e-51 | -8.615850e-47 |
| Msa0311130 | Msa0511380 | -0.803224 | 3.861215e-49 | -8.615850e-47 |
| Msa0311900 | Msa0511380 | 0.811615 | 6.407110e-51 | -8.615850e-47 |
| Msa0342590 | Msa0511380 | 0.815187 | 1.050988e-51 | -8.615850e-47 |
| Msa0511280 | Msa0511380 | 0.959169 | 3.795817e-117 | -8.615850e-47 |
| Msa0511380 | Msa0521720 | 0.816861 | 4.444741e-52 | -8.615850e-47 |
| Msa0511380 | Msa0548420 | 0.809321 | 2.005061e-50 | -8.615850e-47 |
| Msa0511380 | Msa0742690 | -0.816891 | 4.377245e-52 | -8.615850e-47 |
| Msa0511380 | Msa0777210 | 0.802879 | 4.550377e-49 | -8.615850e-47 |
| Msa0511380 | Msa0814350 | 0.810954 | 8.913456e-51 | -8.615850e-47 |
| Msa0511380 | Msa0827560 | -0.809885 | 1.516852e-50 | -8.615850e-47 |
| Msa0511380 | Msa0829580 | 0.800669 | 1.292919e-48 | -8.615850e-47 |
| Msa0511380 | Msa0862750 | -0.800459 | 1.426771e-48 | -8.615850e-47 |
| Msa0511380 | Msa0878410 | 0.816562 | 5.188195e-52 | -8.615850e-47 |
| Msa0511380 | Msa0882360 | 0.828756 | 7.533316e-55 | -8.615850e-47 |
| Msa0511380 | Msa0947420 | 0.849572 | 2.967176e-60 | -8.615850e-47 |
| Msa0511380 | Msa0947520 | 0.811845 | 5.709309e-51 | -8.615850e-47 |
| Msa0511380 | Msa1026970 | 0.864103 | 1.547294e-64 | -8.615850e-47 |
| Msa0511380 | Msa1111900 | 0.838992 | 2.067679e-57 | -8.615850e-47 |
| Msa0511380 | Msa1133760 | 0.841458 | 4.694172e-58 | -8.615850e-47 |
| Msa0511380 | Msa1154310 | 0.859004 | 5.581293e-63 | -8.615850e-47 |
| Msa0511380 | Msa1157200 | 0.802121 | 6.519198e-49 | -8.615850e-47 |
| Msa0511380 | Msa1171720 | 0.926419 | 4.809730e-91 | -8.615850e-47 |
| Msa0511380 | Msa1187160 | 0.809692 | 1.668799e-50 | -8.615850e-47 |
| Msa0511380 | Msa1197820 | 0.807573 | 4.732398e-50 | -8.615850e-47 |
| Msa0511380 | Msa1204240 | 0.843508 | 1.342535e-58 | -8.615850e-47 |
| Msa0511380 | Msa1213860 | 0.842923 | 1.922009e-58 | -8.615850e-47 |
| Msa0511380 | Msa1251500 | 0.822243 | 2.628582e-53 | -8.615850e-47 |
| Msa0511380 | Msa1258600 | 0.807974 | 3.888785e-50 | -8.615850e-47 |
| Msa0511380 | Msa1292140 | 0.811920 | 5.498521e-51 | -8.615850e-47 |
| Msa0511380 | Msa1295200 | 0.800931 | 1.143112e-48 | -8.615850e-47 |
| Msa0511380 | Msa1298440 | 0.816807 | 4.572407e-52 | -8.615850e-47 |
| Msa0511380 | Msa1321840 | 0.813817 | 2.111984e-51 | -8.615850e-47 |
| Msa0511380 | Msa1357090 | -0.810929 | 9.025491e-51 | -8.615850e-47 |
| Msa0511380 | Msa1359520 | 0.828058 | 1.109970e-54 | -8.615850e-47 |
| Msa0511380 | Msa1371540 | -0.804457 | 2.140149e-49 | -8.615850e-47 |
| Msa0511380 | Msa1375640 | 0.821462 | 3.987383e-53 | -8.615850e-47 |
| Msa0511380 | Msa1375730 | 0.844049 | 9.615350e-59 | -8.615850e-47 |
| Msa0511380 | Msa1376520 | 0.800641 | 1.310296e-48 | -8.615850e-47 |
| Msa0511380 | Msa1400940 | 0.807619 | 4.627424e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511380 | MtrunA17_Chr3g0117631 | 96.024 | 327 | 10 | 1 | 1 | 324 | 1 | 327 | 0.0 | 645 |
| Msa0511380 | MtrunA17_Chr4g0059061 | 49.363 | 314 | 143 | 5 | 9 | 318 | 11 | 312 | 7.23e-102 | 302 |
| Msa0511380 | MtrunA17_Chr8g0380321 | 35.507 | 276 | 166 | 4 | 39 | 303 | 5 | 279 | 1.77e-53 | 177 |
| Msa0511380 | MtrunA17_Chr1g0210871 | 28.402 | 338 | 193 | 6 | 6 | 299 | 223 | 555 | 7.73e-39 | 144 |
| Msa0511380 | MtrunA17_Chr5g0412301 | 29.969 | 327 | 173 | 8 | 20 | 300 | 233 | 549 | 1.77e-36 | 137 |
| Msa0511380 | MtrunA17_Chr5g0410781 | 32.258 | 186 | 112 | 6 | 58 | 234 | 64 | 244 | 1.69e-27 | 107 |
| Msa0511380 | MtrunA17_Chr7g0217951 | 33.333 | 174 | 103 | 5 | 64 | 228 | 257 | 426 | 2.23e-26 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511380 | AT1G23550.1 | 38.214 | 280 | 160 | 3 | 47 | 314 | 45 | 323 | 9.82e-64 | 204 |
| Msa0511380 | AT3G47720.1 | 36.893 | 309 | 171 | 8 | 10 | 304 | 8 | 306 | 1.63e-56 | 186 |
| Msa0511380 | AT5G62520.1 | 40.672 | 268 | 141 | 8 | 47 | 304 | 42 | 301 | 1.35e-54 | 181 |
| Msa0511380 | AT1G70440.2 | 31.908 | 304 | 185 | 7 | 20 | 307 | 7 | 304 | 1.84e-47 | 162 |
| Msa0511380 | AT1G70440.1 | 31.908 | 304 | 185 | 7 | 20 | 307 | 7 | 304 | 1.84e-47 | 162 |
| Msa0511380 | AT1G32230.6 | 31.561 | 301 | 155 | 7 | 58 | 312 | 276 | 571 | 2.41e-40 | 149 |
| Msa0511380 | AT1G32230.4 | 31.561 | 301 | 155 | 7 | 58 | 312 | 276 | 571 | 2.41e-40 | 149 |
| Msa0511380 | AT1G32230.2 | 31.561 | 301 | 155 | 7 | 58 | 312 | 276 | 571 | 2.41e-40 | 149 |
| Msa0511380 | AT1G32230.5 | 31.561 | 301 | 155 | 7 | 58 | 312 | 276 | 571 | 2.41e-40 | 149 |
| Msa0511380 | AT1G32230.1 | 31.457 | 302 | 155 | 7 | 58 | 312 | 276 | 572 | 2.92e-40 | 149 |
| Msa0511380 | AT1G32230.3 | 31.849 | 292 | 148 | 7 | 58 | 303 | 276 | 562 | 7.58e-40 | 147 |
| Msa0511380 | AT5G62520.2 | 40.104 | 192 | 100 | 7 | 47 | 228 | 42 | 228 | 2.09e-37 | 134 |
| Msa0511380 | AT2G35510.1 | 29.904 | 311 | 151 | 8 | 48 | 303 | 262 | 560 | 1.10e-31 | 124 |
| Msa0511380 | AT2G35510.3 | 29.904 | 311 | 151 | 8 | 48 | 303 | 262 | 560 | 1.10e-31 | 124 |
| Msa0511380 | AT2G35510.2 | 32.642 | 193 | 111 | 4 | 48 | 230 | 262 | 445 | 1.73e-25 | 106 |
Find 69 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATACTGTGCAGGGTTATTT+TGG | 0.115015 | 3_4:+60909030 | Msa0511380:CDS |
| AGTTGTGCGGATTATGATTC+TGG | 0.187777 | 3_4:+60909097 | Msa0511380:CDS |
| CGAATCTCCACCGCGAAGTT+TGG | 0.267880 | 3_4:-60908029 | None:intergenic |
| TTCTCCTAACCTAACTAAAA+AGG | 0.275442 | 3_4:-60907849 | None:intergenic |
| CTTTGTAGAACTTGCAAATC+AGG | 0.284073 | 3_4:-60909431 | None:intergenic |
| CTCCAACTAAGTACATGATT+TGG | 0.360085 | 3_4:+60909137 | Msa0511380:CDS |
| CTAAAGACGAGGTTTCTTCA+TGG | 0.400145 | 3_4:+60907893 | Msa0511380:CDS |
| GACGAGGTTTCTTCATGGCT+TGG | 0.402614 | 3_4:+60907898 | Msa0511380:CDS |
| ACGAGGTTTCTTCATGGCTT+GGG | 0.407523 | 3_4:+60907899 | Msa0511380:CDS |
| TTCTTCGCCGGTGGTGGTGG+CGG | 0.412701 | 3_4:-60907798 | None:intergenic |
| CAAGTTCTACAAAGCTAGAA+AGG | 0.426903 | 3_4:+60909440 | Msa0511380:CDS |
| GTAGAATGAATACTCATGTT+TGG | 0.434386 | 3_4:+60909164 | Msa0511380:CDS |
| ACTGGTGAGAATGACGTTAG+AGG | 0.440885 | 3_4:+60908079 | Msa0511380:CDS |
| CATCATGATCCCATTCCTCT+TGG | 0.443393 | 3_4:-60907724 | None:intergenic |
| CTTTGAAGAGGAGAATCATC+TGG | 0.446663 | 3_4:-60908154 | None:intergenic |
| TTCAAGGTTTCTTCTTTGAA+AGG | 0.449498 | 3_4:+60909205 | Msa0511380:CDS |
| GTTGTGCGGATTATGATTCT+GGG | 0.450865 | 3_4:+60909098 | Msa0511380:CDS |
| CTCCAAATCATGTACTTAGT+TGG | 0.452958 | 3_4:-60909139 | None:intergenic |
| TTGTTCTTCGCCGGTGGTGG+TGG | 0.454132 | 3_4:-60907801 | None:intergenic |
| ATCAAGTTGTGGCGAAACCT+TGG | 0.465639 | 3_4:-60909403 | None:intergenic |
| TGAGGCATTTGATACTGTGC+AGG | 0.465779 | 3_4:+60909020 | Msa0511380:CDS |
| GGAGGAGTCTTCACCGATGC+TGG | 0.466913 | 3_4:-60907747 | None:intergenic |
| TTTGCAGCGGTTGAGATTGA+AGG | 0.470522 | 3_4:+60909324 | Msa0511380:intron |
| TATGGAATTCCAAGAGGAAT+GGG | 0.475448 | 3_4:+60907715 | None:intergenic |
| ATAGAAATCAAAGTCGGAAA+AGG | 0.484157 | 3_4:-60909375 | None:intergenic |
| TGCGAGACCAACTTCACCTT+CGG | 0.491538 | 3_4:+60909350 | Msa0511380:CDS |
| ACCGCTTTCGCAGTCGGAAA+CGG | 0.496051 | 3_4:-60907771 | None:intergenic |
| TTTGATTTCTATGCTTTCCA+AGG | 0.497741 | 3_4:+60909386 | Msa0511380:CDS |
| GAATCATAATCCGCACAACT+TGG | 0.501035 | 3_4:-60909094 | None:intergenic |
| TATGCTTGGTATGGAGCTAC+TGG | 0.501397 | 3_4:+60908061 | Msa0511380:CDS |
| TTCGCAGTCGGAAACGGTGG+AGG | 0.502683 | 3_4:-60907765 | None:intergenic |
| TCGAAGCCGCGCCTGTGAAA+CGG | 0.510220 | 3_4:-60907978 | None:intergenic |
| TTGAAGCTTAAAACATATGC+AGG | 0.515889 | 3_4:-60909187 | None:intergenic |
| CAGCAAGCAAGGTCAAAGAA+TGG | 0.519355 | 3_4:+60910637 | Msa0511380:CDS |
| TAAAGAACTAACCTTTGAAG+AGG | 0.520559 | 3_4:-60908166 | None:intergenic |
| TTTGTAGAACTTGCAAATCA+GGG | 0.522828 | 3_4:-60909430 | None:intergenic |
| GTGTTCTGACGCCGTTTCAC+AGG | 0.529220 | 3_4:+60907967 | Msa0511380:CDS |
| AACGGTTTCAGTCATGTCCA+TGG | 0.529234 | 3_4:+60908112 | Msa0511380:CDS |
| GAAGAAACCTCGTCTTTAGT+AGG | 0.529434 | 3_4:-60907889 | None:intergenic |
| TCGTTGTTCTTCGCCGGTGG+TGG | 0.529479 | 3_4:-60907804 | None:intergenic |
| AGTTGTGCTGTTGGCAGAGA+TGG | 0.530261 | 3_4:+60908995 | Msa0511380:CDS |
| CTATGGAATTCCAAGAGGAA+TGG | 0.530385 | 3_4:+60907714 | None:intergenic |
| ACCGTTTCCGACTGCGAAAG+CGG | 0.530594 | 3_4:+60907770 | Msa0511380:CDS |
| GGTGTTTCCGCCACCACCAC+CGG | 0.531519 | 3_4:+60907791 | Msa0511380:CDS |
| GTTAGAGGCATTCTATCAAA+CGG | 0.543708 | 3_4:+60908094 | Msa0511380:CDS |
| ATTCGAATGTGAAATATGCT+TGG | 0.547805 | 3_4:+60908047 | Msa0511380:CDS |
| CAGATGATTCTCCTCTTCAA+AGG | 0.551412 | 3_4:+60908155 | Msa0511380:CDS |
| AATGTGAAATATGCTTGGTA+TGG | 0.558383 | 3_4:+60908052 | Msa0511380:CDS |
| TCGTTGTCGTTGTTCTTCGC+CGG | 0.558549 | 3_4:-60907810 | None:intergenic |
| GGAAACACCGCTTTCGCAGT+CGG | 0.561570 | 3_4:-60907777 | None:intergenic |
| GAAGCTGTTTCCAAACTTCG+CGG | 0.562465 | 3_4:+60908019 | Msa0511380:CDS |
| TTGTCGTTGTTCTTCGCCGG+TGG | 0.567729 | 3_4:-60907807 | None:intergenic |
| AAAGGCACCGAAGGTGAAGT+TGG | 0.570890 | 3_4:-60909357 | None:intergenic |
| CTGACGCCGTTTCACAGGCG+CGG | 0.588804 | 3_4:+60907972 | Msa0511380:CDS |
| ACGGTTTCAGTCATGTCCAT+GGG | 0.601023 | 3_4:+60908113 | Msa0511380:CDS |
| TGGGATCATGATGCCAGCAT+CGG | 0.605132 | 3_4:+60907734 | Msa0511380:CDS |
| AAAGTCGGAAAAGGCACCGA+AGG | 0.610022 | 3_4:-60909366 | None:intergenic |
| GAAAGCATAGAAATCAAAGT+CGG | 0.616257 | 3_4:-60909381 | None:intergenic |
| AGAGACAGATGCTATTCCCA+TGG | 0.619618 | 3_4:-60908129 | None:intergenic |
| GAGGCATTTGATACTGTGCA+GGG | 0.621915 | 3_4:+60909021 | Msa0511380:CDS |
| ATCAGGGCAATATCAAGTTG+TGG | 0.630687 | 3_4:-60909414 | None:intergenic |
| GCTTTCGCAGTCGGAAACGG+TGG | 0.645384 | 3_4:-60907768 | None:intergenic |
| CATTAAGTATTATAGAGCCA+AGG | 0.648089 | 3_4:+60909643 | Msa0511380:CDS |
| ACAATGTTATCCAAGTTGTG+CGG | 0.655418 | 3_4:+60909084 | Msa0511380:CDS |
| TTCACGACCTACTAAAGACG+AGG | 0.669260 | 3_4:+60907882 | Msa0511380:CDS |
| GCTGTTTCCAAACTTCGCGG+TGG | 0.670880 | 3_4:+60908022 | Msa0511380:CDS |
| TTGTGCGGATTATGATTCTG+GGG | 0.671025 | 3_4:+60909099 | Msa0511380:CDS |
| CTGTTGGCAGAGATGGCGTG+AGG | 0.672325 | 3_4:+60909002 | Msa0511380:CDS |
| ATTCACTATGGAATTCCAAG+AGG | 0.710595 | 3_4:+60907709 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTAAAAATAGAAGAATA+AGG | + | chr3_4:60909945-60909964 | Msa0511380:intron | 10.0% |
| !!! | AAGATAAAATGTTTTATGTT+TGG | - | chr3_4:60908766-60908785 | None:intergenic | 15.0% |
| !!! | TATGATCTCTTTTAATTTTA+AGG | + | chr3_4:60909690-60909709 | Msa0511380:intron | 15.0% |
| !!! | AATTACATATTTACTTTTGT+TGG | + | chr3_4:60909879-60909898 | Msa0511380:intron | 15.0% |
| !!! | AATTAAACTAAATCTAGAAT+AGG | - | chr3_4:60910576-60910595 | None:intergenic | 15.0% |
| !!! | ATTCTAGATTTAGTTTAATT+TGG | + | chr3_4:60910576-60910595 | Msa0511380:intron | 15.0% |
| !!! | TCCAATGTTAATTTGAATTT+AGG | + | chr3_4:60908192-60908211 | Msa0511380:intron | 20.0% |
| !! | ACCTAAATTCAAATTAACAT+TGG | - | chr3_4:60908196-60908215 | None:intergenic | 20.0% |
| !! | AATTTATCTAATATAAGCAC+TGG | - | chr3_4:60908875-60908894 | None:intergenic | 20.0% |
| !!! | ATGTTTCTATGTATATTGAT+GGG | + | chr3_4:60908942-60908961 | Msa0511380:intron | 20.0% |
| !!! | TTTTTTATTGTTTTTTGCAG+CGG | + | chr3_4:60909311-60909330 | Msa0511380:intron | 20.0% |
| !!! | TAATTTTAAGGTTGTATTTG+AGG | + | chr3_4:60909702-60909721 | Msa0511380:intron | 20.0% |
| !! | TATGAATACTATTACTATGT+TGG | + | chr3_4:60909784-60909803 | Msa0511380:intron | 20.0% |
| !! | ATTAAGAATTCTAATGTACA+AGG | - | chr3_4:60909847-60909866 | None:intergenic | 20.0% |
| !! | CTTACTTTGACTATATAAAA+AGG | - | chr3_4:60910252-60910271 | None:intergenic | 20.0% |
| !!! | ATTCTGATTCCTTTTTAGTT+AGG | + | chr3_4:60907840-60907859 | Msa0511380:CDS | 25.0% |
| ! | TCATAAGCTATTCCAAAATA+AGG | + | chr3_4:60908304-60908323 | Msa0511380:intron | 25.0% |
| !!! | TAGAATTGATTTTGCCATTT+TGG | + | chr3_4:60908379-60908398 | Msa0511380:intron | 25.0% |
| !!! | TTTTAGTTTCTGACTAAAAG+TGG | - | chr3_4:60908496-60908515 | None:intergenic | 25.0% |
| ! | TCAAGTATAATCAATTCTTG+AGG | - | chr3_4:60908669-60908688 | None:intergenic | 25.0% |
| ! | TTGAACAATAAGTGTATGTA+TGG | - | chr3_4:60908844-60908863 | None:intergenic | 25.0% |
| !! | CATGTTTCTATGTATATTGA+TGG | + | chr3_4:60908941-60908960 | Msa0511380:intron | 25.0% |
| ! | ACTAAATTCATGAAACAACA+AGG | - | chr3_4:60909279-60909298 | None:intergenic | 25.0% |
| !!! | CTTGATATTGTTGTTTTGTT+TGG | + | chr3_4:60909506-60909525 | Msa0511380:intron | 25.0% |
| !! | TTTTTCTATCAATTCATGTC+GGG | - | chr3_4:60909585-60909604 | None:intergenic | 25.0% |
| !! | CTTTTTCTATCAATTCATGT+CGG | - | chr3_4:60909586-60909605 | None:intergenic | 25.0% |
| ! | ATAGAAGAATAAGGAACTAT+TGG | + | chr3_4:60909954-60909973 | Msa0511380:intron | 25.0% |
| !! | ATTCAAAACACTAGTCTATT+AGG | + | chr3_4:60910192-60910211 | Msa0511380:intron | 25.0% |
| ! | CTATATAAAAATGCTCAATG+TGG | - | chr3_4:60910242-60910261 | None:intergenic | 25.0% |
| ! | CTATATAAAAATGCTCAATG+TGG | - | chr3_4:60910242-60910261 | None:intergenic | 25.0% |
| !!! | GATTCCTTTTTAGTTAGGTT+AGG | + | chr3_4:60907845-60907864 | Msa0511380:CDS | 30.0% |
| TTCTCCTAACCTAACTAAAA+AGG | - | chr3_4:60907852-60907871 | None:intergenic | 30.0% | |
| !!! | TTTTTAGTTAGGTTAGGAGA+AGG | + | chr3_4:60907851-60907870 | Msa0511380:CDS | 30.0% |
| AGCTTCTGCATAAAAAAGAA+AGG | - | chr3_4:60908005-60908024 | None:intergenic | 30.0% | |
| ATTCGAATGTGAAATATGCT+TGG | + | chr3_4:60908047-60908066 | Msa0511380:CDS | 30.0% | |
| AATGTGAAATATGCTTGGTA+TGG | + | chr3_4:60908052-60908071 | Msa0511380:CDS | 30.0% | |
| ! | TAAAGAACTAACCTTTGAAG+AGG | - | chr3_4:60908169-60908188 | None:intergenic | 30.0% |
| CAAAATGTCTAGTGTATGTT+TGG | + | chr3_4:60908347-60908366 | Msa0511380:intron | 30.0% | |
| ATACTCAATAGCAACCAAAA+TGG | - | chr3_4:60908396-60908415 | None:intergenic | 30.0% | |
| ! | AATTGATTCTACTTGAAGCT+AGG | + | chr3_4:60908416-60908435 | Msa0511380:intron | 30.0% |
| !! | ACTGATTTTCACATGTTTGA+TGG | + | chr3_4:60908621-60908640 | Msa0511380:intron | 30.0% |
| GTAGAATGAATACTCATGTT+TGG | + | chr3_4:60909164-60909183 | Msa0511380:CDS | 30.0% | |
| TTGAAGCTTAAAACATATGC+AGG | - | chr3_4:60909190-60909209 | None:intergenic | 30.0% | |
| !! | TGCATATGTTTTAAGCTTCA+AGG | + | chr3_4:60909189-60909208 | Msa0511380:CDS | 30.0% |
| TTCAAGGTTTCTTCTTTGAA+AGG | + | chr3_4:60909205-60909224 | Msa0511380:CDS | 30.0% | |
| ATAGAAATCAAAGTCGGAAA+AGG | - | chr3_4:60909378-60909397 | None:intergenic | 30.0% | |
| ! | GAAAGCATAGAAATCAAAGT+CGG | - | chr3_4:60909384-60909403 | None:intergenic | 30.0% |
| ! | TTTGATTTCTATGCTTTCCA+AGG | + | chr3_4:60909386-60909405 | Msa0511380:CDS | 30.0% |
| TTTGTAGAACTTGCAAATCA+GGG | - | chr3_4:60909433-60909452 | None:intergenic | 30.0% | |
| TCTTAAACCAATATGCAAGT+AGG | - | chr3_4:60909484-60909503 | None:intergenic | 30.0% | |
| CATTAAGTATTATAGAGCCA+AGG | + | chr3_4:60909643-60909662 | Msa0511380:CDS | 30.0% | |
| GGTAGTGATGCTTAAAAAAT+TGG | + | chr3_4:60909723-60909742 | Msa0511380:intron | 30.0% | |
| TGATCAGTATTCTTATGCAT+TGG | + | chr3_4:60909821-60909840 | Msa0511380:intron | 30.0% | |
| CACATACATCTTCTTATATC+TGG | - | chr3_4:60909996-60910015 | None:intergenic | 30.0% | |
| CAGATATAAGAAGATGTATG+TGG | + | chr3_4:60909994-60910013 | Msa0511380:intron | 30.0% | |
| ! | TTCATCCTATGTCTTTTTAG+GGG | - | chr3_4:60910123-60910142 | None:intergenic | 30.0% |
| ! | CTTCATCCTATGTCTTTTTA+GGG | - | chr3_4:60910124-60910143 | None:intergenic | 30.0% |
| ! | TCTTCATCCTATGTCTTTTT+AGG | - | chr3_4:60910125-60910144 | None:intergenic | 30.0% |
| CTATATAAAAAGGCTCAATG+TGG | - | chr3_4:60910291-60910310 | None:intergenic | 30.0% | |
| ! | AAGTAGAGTGATTTTTCCAA+CGG | - | chr3_4:60910405-60910424 | None:intergenic | 30.0% |
| ACTCTACTTAGTAAGTCAAA+AGG | + | chr3_4:60910416-60910435 | Msa0511380:intron | 30.0% | |
| CTCGAAGGAAAAAAAGAAAA+GGG | - | chr3_4:60910520-60910539 | None:intergenic | 30.0% | |
| !! | GTTAGAGGCATTCTATCAAA+CGG | + | chr3_4:60908094-60908113 | Msa0511380:CDS | 35.0% |
| !!! | TATGGAATGTCGCCTTATTT+TGG | - | chr3_4:60908319-60908338 | None:intergenic | 35.0% |
| AAATAAGGCGACATTCCATA+AGG | + | chr3_4:60908319-60908338 | Msa0511380:intron | 35.0% | |
| !! | AGACATTTTGAGAGACCTTA+TGG | - | chr3_4:60908337-60908356 | None:intergenic | 35.0% |
| ! | GGCAAAATCAATTCTAAGAG+TGG | - | chr3_4:60908375-60908394 | None:intergenic | 35.0% |
| GACTAAAAGTGGTATGTGTT+TGG | - | chr3_4:60908485-60908504 | None:intergenic | 35.0% | |
| ACACATGCTTAGTGTATGTT+TGG | + | chr3_4:60908555-60908574 | Msa0511380:intron | 35.0% | |
| ! | ATGTTTGGTTTCACTTCTAG+AGG | + | chr3_4:60908570-60908589 | Msa0511380:intron | 35.0% |
| ! | TGTTTGGTTTCACTTCTAGA+GGG | + | chr3_4:60908571-60908590 | Msa0511380:intron | 35.0% |
| ! | ACTTCTAGAGGGATCAAAAT+TGG | + | chr3_4:60908582-60908601 | Msa0511380:intron | 35.0% |
| AGTGTAAAAAGTTGTGCTGT+TGG | + | chr3_4:60908986-60909005 | Msa0511380:intron | 35.0% | |
| !! | ATACTGTGCAGGGTTATTTT+GGG | + | chr3_4:60909031-60909050 | Msa0511380:CDS | 35.0% |
| ACAATGTTATCCAAGTTGTG+CGG | + | chr3_4:60909084-60909103 | Msa0511380:CDS | 35.0% | |
| CTCCAACTAAGTACATGATT+TGG | + | chr3_4:60909137-60909156 | Msa0511380:CDS | 35.0% | |
| CTCCAAATCATGTACTTAGT+TGG | - | chr3_4:60909142-60909161 | None:intergenic | 35.0% | |
| CTTTGTAGAACTTGCAAATC+AGG | - | chr3_4:60909434-60909453 | None:intergenic | 35.0% | |
| CAAGTTCTACAAAGCTAGAA+AGG | + | chr3_4:60909440-60909459 | Msa0511380:CDS | 35.0% | |
| TTCTACAAAGCTAGAAAGGT+AGG | + | chr3_4:60909444-60909463 | Msa0511380:intron | 35.0% | |
| TTTGCTTCCTACTTGCATAT+TGG | + | chr3_4:60909474-60909493 | Msa0511380:intron | 35.0% | |
| ! | TCATTTGCTCTATTTCTTGC+AGG | + | chr3_4:60909547-60909566 | Msa0511380:intron | 35.0% |
| GAAAAAGTGAGACAAATTGC+AGG | + | chr3_4:60909599-60909618 | Msa0511380:CDS | 35.0% | |
| GAATGAAACTAGTTGTACCT+TGG | - | chr3_4:60909663-60909682 | None:intergenic | 35.0% | |
| AGAAACTAGATGCACTTCTA+GGG | - | chr3_4:60910064-60910083 | None:intergenic | 35.0% | |
| !! | GTTTTGAATTGAACTCGTTG+TGG | - | chr3_4:60910181-60910200 | None:intergenic | 35.0% |
| GCTCGAAGGAAAAAAAGAAA+AGG | - | chr3_4:60910521-60910540 | None:intergenic | 35.0% | |
| GAAGAAACCTCGTCTTTAGT+AGG | - | chr3_4:60907892-60907911 | None:intergenic | 40.0% | |
| CTAAAGACGAGGTTTCTTCA+TGG | + | chr3_4:60907893-60907912 | Msa0511380:CDS | 40.0% | |
| ! | CTTTGAAGAGGAGAATCATC+TGG | - | chr3_4:60908157-60908176 | None:intergenic | 40.0% |
| CAGATGATTCTCCTCTTCAA+AGG | + | chr3_4:60908155-60908174 | Msa0511380:CDS | 40.0% | |
| ! | GATACTGTGCAGGGTTATTT+TGG | + | chr3_4:60909030-60909049 | Msa0511380:CDS | 40.0% |
| GAATCATAATCCGCACAACT+TGG | - | chr3_4:60909097-60909116 | None:intergenic | 40.0% | |
| ! | AGTTGTGCGGATTATGATTC+TGG | + | chr3_4:60909097-60909116 | Msa0511380:CDS | 40.0% |
| ! | GTTGTGCGGATTATGATTCT+GGG | + | chr3_4:60909098-60909117 | Msa0511380:CDS | 40.0% |
| ! | TTGTGCGGATTATGATTCTG+GGG | + | chr3_4:60909099-60909118 | Msa0511380:CDS | 40.0% |
| ! | ATCAGGGCAATATCAAGTTG+TGG | - | chr3_4:60909417-60909436 | None:intergenic | 40.0% |
| AAAGCTAGAAAGGTAGGTGT+TGG | + | chr3_4:60909450-60909469 | Msa0511380:intron | 40.0% | |
| TGCTATGCTGTTCATACTTG+AGG | + | chr3_4:60910024-60910043 | Msa0511380:intron | 40.0% | |
| GCTATGCTGTTCATACTTGA+GGG | + | chr3_4:60910025-60910044 | Msa0511380:intron | 40.0% | |
| TTCATACTTGAGGGTTGTTC+TGG | + | chr3_4:60910034-60910053 | Msa0511380:intron | 40.0% | |
| GAAACTAGATGCACTTCTAG+GGG | - | chr3_4:60910063-60910082 | None:intergenic | 40.0% | |
| GAGAAACTAGATGCACTTCT+AGG | - | chr3_4:60910065-60910084 | None:intergenic | 40.0% | |
| !! | TGTCTTTTTAGGGGACTTCT+AGG | - | chr3_4:60910114-60910133 | None:intergenic | 40.0% |
| GAAGTCCCCTAAAAAGACAT+AGG | + | chr3_4:60910115-60910134 | Msa0511380:intron | 40.0% | |
| AGTCAAAAGGACACAGCTAT+TGG | + | chr3_4:60910429-60910448 | Msa0511380:intron | 40.0% | |
| ! | CTACAAGTTTTCAGCAAGCA+AGG | + | chr3_4:60910626-60910645 | Msa0511380:CDS | 40.0% |
| CATCATGATCCCATTCCTCT+TGG | - | chr3_4:60907727-60907746 | None:intergenic | 45.0% | |
| TTCACGACCTACTAAAGACG+AGG | + | chr3_4:60907882-60907901 | Msa0511380:CDS | 45.0% | |
| ACGAGGTTTCTTCATGGCTT+GGG | + | chr3_4:60907899-60907918 | Msa0511380:CDS | 45.0% | |
| ! | GAAGCTGTTTCCAAACTTCG+CGG | + | chr3_4:60908019-60908038 | Msa0511380:CDS | 45.0% |
| TATGCTTGGTATGGAGCTAC+TGG | + | chr3_4:60908061-60908080 | Msa0511380:CDS | 45.0% | |
| ACTGGTGAGAATGACGTTAG+AGG | + | chr3_4:60908079-60908098 | Msa0511380:CDS | 45.0% | |
| AACGGTTTCAGTCATGTCCA+TGG | + | chr3_4:60908112-60908131 | Msa0511380:CDS | 45.0% | |
| ACGGTTTCAGTCATGTCCAT+GGG | + | chr3_4:60908113-60908132 | Msa0511380:CDS | 45.0% | |
| AGAGACAGATGCTATTCCCA+TGG | - | chr3_4:60908132-60908151 | None:intergenic | 45.0% | |
| ! | TGAGGCATTTGATACTGTGC+AGG | + | chr3_4:60909020-60909039 | Msa0511380:CDS | 45.0% |
| ! | GAGGCATTTGATACTGTGCA+GGG | + | chr3_4:60909021-60909040 | Msa0511380:CDS | 45.0% |
| TTTGCAGCGGTTGAGATTGA+AGG | + | chr3_4:60909324-60909343 | Msa0511380:intron | 45.0% | |
| ! | ATCAAGTTGTGGCGAAACCT+TGG | - | chr3_4:60909406-60909425 | None:intergenic | 45.0% |
| AGCTAGTGTGTCATATCCGT+TGG | + | chr3_4:60910386-60910405 | Msa0511380:intron | 45.0% | |
| ACAATAGCAGACATGCTCGA+AGG | - | chr3_4:60910535-60910554 | None:intergenic | 45.0% | |
| CAGCAAGCAAGGTCAAAGAA+TGG | + | chr3_4:60910637-60910656 | Msa0511380:CDS | 45.0% | |
| TGGGATCATGATGCCAGCAT+CGG | + | chr3_4:60907734-60907753 | Msa0511380:CDS | 50.0% | |
| TCGTTGTCGTTGTTCTTCGC+CGG | - | chr3_4:60907813-60907832 | None:intergenic | 50.0% | |
| GACGAGGTTTCTTCATGGCT+TGG | + | chr3_4:60907898-60907917 | Msa0511380:CDS | 50.0% | |
| ! | AGTTGTGCTGTTGGCAGAGA+TGG | + | chr3_4:60908995-60909014 | Msa0511380:CDS | 50.0% |
| TGCGAGACCAACTTCACCTT+CGG | + | chr3_4:60909350-60909369 | Msa0511380:CDS | 50.0% | |
| !! | AAAGGCACCGAAGGTGAAGT+TGG | - | chr3_4:60909360-60909379 | None:intergenic | 50.0% |
| !! | AAAGTCGGAAAAGGCACCGA+AGG | - | chr3_4:60909369-60909388 | None:intergenic | 50.0% |
| ACCGTTTCCGACTGCGAAAG+CGG | + | chr3_4:60907770-60907789 | Msa0511380:CDS | 55.0% | |
| ACCGCTTTCGCAGTCGGAAA+CGG | - | chr3_4:60907774-60907793 | None:intergenic | 55.0% | |
| GGAAACACCGCTTTCGCAGT+CGG | - | chr3_4:60907780-60907799 | None:intergenic | 55.0% | |
| TTGTCGTTGTTCTTCGCCGG+TGG | - | chr3_4:60907810-60907829 | None:intergenic | 55.0% | |
| GTGTTCTGACGCCGTTTCAC+AGG | + | chr3_4:60907967-60907986 | Msa0511380:CDS | 55.0% | |
| ! | GCTGTTTCCAAACTTCGCGG+TGG | + | chr3_4:60908022-60908041 | Msa0511380:CDS | 55.0% |
| CGAATCTCCACCGCGAAGTT+TGG | - | chr3_4:60908032-60908051 | None:intergenic | 55.0% | |
| GGAGGAGTCTTCACCGATGC+TGG | - | chr3_4:60907750-60907769 | None:intergenic | 60.0% | |
| TTCGCAGTCGGAAACGGTGG+AGG | - | chr3_4:60907768-60907787 | None:intergenic | 60.0% | |
| GCTTTCGCAGTCGGAAACGG+TGG | - | chr3_4:60907771-60907790 | None:intergenic | 60.0% | |
| ! | TTGTTCTTCGCCGGTGGTGG+TGG | - | chr3_4:60907804-60907823 | None:intergenic | 60.0% |
| TCGTTGTTCTTCGCCGGTGG+TGG | - | chr3_4:60907807-60907826 | None:intergenic | 60.0% | |
| TCGAAGCCGCGCCTGTGAAA+CGG | - | chr3_4:60907981-60908000 | None:intergenic | 60.0% | |
| CTGTTGGCAGAGATGGCGTG+AGG | + | chr3_4:60909002-60909021 | Msa0511380:CDS | 60.0% | |
| GGTGTTTCCGCCACCACCAC+CGG | + | chr3_4:60907791-60907810 | Msa0511380:CDS | 65.0% | |
| !! | TTCTTCGCCGGTGGTGGTGG+CGG | - | chr3_4:60907801-60907820 | None:intergenic | 65.0% |
| CTGACGCCGTTTCACAGGCG+CGG | + | chr3_4:60907972-60907991 | Msa0511380:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 60907716 | 60910666 | 60907716 | ID=Msa0511380;Name=Msa0511380 |
| chr3_4 | mRNA | 60907716 | 60910666 | 60907716 | ID=Msa0511380-mRNA-1;Parent=Msa0511380;Name=Msa0511380-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.75|0.4|1|1|1|5|0|324 |
| chr3_4 | exon | 60907716 | 60908176 | 60907716 | ID=Msa0511380-mRNA-1:exon:14746;Parent=Msa0511380-mRNA-1 |
| chr3_4 | exon | 60908988 | 60909226 | 60908988 | ID=Msa0511380-mRNA-1:exon:14747;Parent=Msa0511380-mRNA-1 |
| chr3_4 | exon | 60909331 | 60909461 | 60909331 | ID=Msa0511380-mRNA-1:exon:14748;Parent=Msa0511380-mRNA-1 |
| chr3_4 | exon | 60909569 | 60909664 | 60909569 | ID=Msa0511380-mRNA-1:exon:14749;Parent=Msa0511380-mRNA-1 |
| chr3_4 | exon | 60910619 | 60910666 | 60910619 | ID=Msa0511380-mRNA-1:exon:14750;Parent=Msa0511380-mRNA-1 |
| chr3_4 | CDS | 60907716 | 60908176 | 60907716 | ID=Msa0511380-mRNA-1:cds;Parent=Msa0511380-mRNA-1 |
| chr3_4 | CDS | 60908988 | 60909226 | 60908988 | ID=Msa0511380-mRNA-1:cds;Parent=Msa0511380-mRNA-1 |
| chr3_4 | CDS | 60909331 | 60909461 | 60909331 | ID=Msa0511380-mRNA-1:cds;Parent=Msa0511380-mRNA-1 |
| chr3_4 | CDS | 60909569 | 60909664 | 60909569 | ID=Msa0511380-mRNA-1:cds;Parent=Msa0511380-mRNA-1 |
| chr3_4 | CDS | 60910619 | 60910666 | 60910619 | ID=Msa0511380-mRNA-1:cds;Parent=Msa0511380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
