AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0086000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0086000 MtrunA17_Chr1g0201941 90.505 653 41 7 1 648 1 637 0.0 1058
Msa0086000 MtrunA17_Chr6g0463941 54.604 619 200 14 1 580 1 577 5.82e-164 484
Msa0086000 MtrunA17_Chr1g0201911 46.309 596 209 13 13 594 4 502 3.76e-145 433
Msa0086000 MtrunA17_Chr2g0290511 37.231 325 169 7 246 568 76 367 7.53e-52 183
Msa0086000 MtrunA17_Chr2g0290511 43.820 89 47 2 59 145 261 348 1.68e-16 82.0
Msa0086000 MtrunA17_Chr1g0190851 34.545 330 171 6 272 576 224 533 3.80e-44 166
Msa0086000 MtrunA17_Chr1g0190851 41.000 100 56 2 49 145 407 506 1.57e-16 83.2
Msa0086000 MtrunA17_Chr7g0273941 32.975 279 134 6 289 553 241 480 2.52e-39 151
Msa0086000 MtrunA17_Chr7g0273941 44.792 96 43 2 60 145 381 476 3.20e-17 85.1
Msa0086000 MtrunA17_Chr7g0265831 61.165 103 38 2 60 161 115 216 1.12e-32 131
Msa0086000 MtrunA17_Chr7g0265831 43.617 94 51 2 460 552 112 204 5.06e-17 84.3
Msa0086000 MtrunA17_Chr7g0265831 43.210 81 46 0 285 365 285 365 7.47e-14 74.3
Msa0086000 MtrunA17_Chr1g0198171 64.773 88 30 1 59 145 113 200 1.13e-31 129
Msa0086000 MtrunA17_Chr1g0198171 36.296 135 79 4 445 576 94 224 4.67e-19 90.9
Msa0086000 MtrunA17_Chr1g0179191 66.667 87 28 1 60 145 131 217 1.37e-31 129
Msa0086000 MtrunA17_Chr1g0179191 39.098 133 67 4 455 585 122 242 9.29e-20 93.2
Msa0086000 MtrunA17_Chr1g0179191 37.607 117 65 2 257 365 254 370 1.30e-14 77.0
Msa0086000 MtrunA17_Chr5g0409071 33.696 92 56 3 464 554 46 133 8.68e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0086000 AT1G76890.2 43.894 606 238 15 57 641 38 562 1.88e-142 427
Msa0086000 AT1G76880.1 54.154 325 100 7 50 367 51 333 2.27e-89 290
Msa0086000 AT5G03680.1 30.620 516 233 14 60 558 119 526 2.54e-58 207
Msa0086000 AT5G28300.1 37.143 280 135 8 289 550 300 556 2.25e-46 174
Msa0086000 AT5G28300.1 40.385 104 51 2 53 145 452 555 6.55e-16 82.0
Msa0086000 AT3G10000.1 34.682 346 160 11 35 374 59 344 2.17e-42 160
Msa0086000 AT3G10000.1 43.434 99 55 1 455 552 80 178 7.30e-21 96.7
Msa0086000 AT1G33240.3 66.972 109 31 2 59 165 61 166 6.95e-40 155
Msa0086000 AT1G33240.1 66.972 109 31 2 59 165 61 166 2.05e-39 154
Msa0086000 AT3G10000.2 33.623 345 155 11 35 374 59 334 9.64e-39 149
Msa0086000 AT3G10000.2 40.816 98 49 1 455 552 80 168 2.98e-18 88.6
Msa0086000 AT5G47660.1 32.143 280 136 5 280 557 168 395 2.25e-31 127
Msa0086000 AT5G47660.1 41.000 100 53 3 60 158 303 397 3.04e-14 75.5
Msa0086000 AT1G33240.2 62.162 74 23 2 94 165 57 127 7.63e-19 91.3
Msa0086000 AT1G33240.2 42.529 87 49 1 60 145 396 482 5.20e-17 85.5
Msa0086000 AT3G25990.1 34.409 93 60 1 464 555 55 147 1.12e-11 67.4

Find 207 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATTGTTGCTTCTGTTAT+TGG 0.191531 1_2:-66504536 None:intergenic
TATCTTAACTCTTCTCTAAT+TGG 0.207615 1_2:-66506249 None:intergenic
TTTCGAGATGCAAGTGTTAA+AGG 0.236888 1_2:+66503266 Msa0086000:CDS
GTAGGATTCATATTCATAAT+TGG 0.244531 1_2:-66504644 None:intergenic
TTTAAGCATACGATCGGATA+TGG 0.256367 1_2:+66503235 Msa0086000:CDS
ACAACAATTGGTGACAAATA+TGG 0.265796 1_2:+66505291 Msa0086000:CDS
AGCAATAGAGACCTTAATTA+AGG 0.274675 1_2:+66506307 Msa0086000:three_prime_UTR
TCCTCCCATAGAGGACCTTT+TGG 0.292057 1_2:-66505445 None:intergenic
TCAGTTGGATGCTTTGTATA+AGG 0.314622 1_2:+66505615 Msa0086000:CDS
ATAAAATACAACCTTAATTA+AGG 0.315567 1_2:-66506318 None:intergenic
ATGTTTATGGTGGTGTAAAT+TGG 0.318061 1_2:+66506355 Msa0086000:three_prime_UTR
GAGAAGGAGCAGCTGCAAAA+AGG 0.318992 1_2:+66505948 Msa0086000:three_prime_UTR
AGCAAAACCACCACAAATTT+CGG 0.324820 1_2:+66504469 Msa0086000:CDS
GGATTTGCAGAAGAGATTCT+TGG 0.330079 1_2:+66504895 Msa0086000:CDS
GCATCCAACTGATGAAAATA+AGG 0.337506 1_2:-66505604 None:intergenic
GATGGTGGTGATGGTGGTTG+TGG 0.340255 1_2:+66506040 Msa0086000:three_prime_UTR
GAAGTAGGGTTTGTTGTTGA+TGG 0.341682 1_2:-66504698 None:intergenic
AGAAGATGATGAAGAAGATA+TGG 0.346341 1_2:+66505834 Msa0086000:CDS
ATGGACCAAAAGGTCCTCTA+TGG 0.346770 1_2:+66505440 Msa0086000:CDS
TCCTTCTTCCATTGTGTCTT+CGG 0.351775 1_2:-66504801 None:intergenic
TTAACTTGTACCACTGATAT+TGG 0.352534 1_2:-66505199 None:intergenic
GCAATGGCGGCCACCTCAGC+AGG 0.356286 1_2:+66505735 Msa0086000:CDS
GGACATGTCTTTGAATCTTC+GGG 0.356338 1_2:-66505583 None:intergenic
AGGACATGTCTTTGAATCTT+CGG 0.357417 1_2:-66505584 None:intergenic
GAAGGATTGGATGGGATTGT+AGG 0.364446 1_2:-66504662 None:intergenic
CCACCTTCCGCCGTCATGTT+AGG 0.366216 1_2:-66503101 None:intergenic
GATGAAAGTGGTGGTGGTGG+TGG 0.369384 1_2:+66505856 Msa0086000:CDS
TGCTGCTGCGGGACTATTGT+CGG 0.372476 1_2:-66505265 None:intergenic
CTCGAAAGAGGAAGCGGAAA+TGG 0.374520 1_2:+66504825 Msa0086000:CDS
AATAGATCTGTAGAAATGTT+AGG 0.398303 1_2:-66504743 None:intergenic
ACGGCGGAAGGTGGTGGTGG+TGG 0.399512 1_2:+66503110 Msa0086000:CDS
GAAGGTGGTGGTGGTGGAGT+TGG 0.401408 1_2:+66503116 Msa0086000:CDS
AATGCTTGAACTTCAACTTT+CGG 0.402868 1_2:-66505376 None:intergenic
CTCTCTTTCTATGTGTCCTA+TGG 0.405414 1_2:-66502825 None:intergenic
TGGTGGTGGTGGTAACTTTG+AGG 0.417578 1_2:+66505870 Msa0086000:CDS
ACAGGAAGAAGAAGAAGATA+TGG 0.424674 1_2:+66505786 Msa0086000:CDS
GATGGTGGTTGTGGTTGTGA+TGG 0.425323 1_2:+66506049 Msa0086000:three_prime_UTR
TGAAGAACCTCGGTTACAAT+AGG 0.426544 1_2:+66505482 Msa0086000:CDS
GTAGGAGCTAGCCATGGAAT+TGG 0.427286 1_2:-66504768 None:intergenic
GTAGCCGGAGGTGGTTGTGC+TGG 0.433992 1_2:-66505232 None:intergenic
ATCAGGAAGCTAGCAGAACT+TGG 0.434480 1_2:+66504263 Msa0086000:intron
GGAAGAGGGTTGGTGGAAGT+AGG 0.435197 1_2:-66504713 None:intergenic
GAGCATGGTGGCACCGTTGA+TGG 0.439289 1_2:+66505699 Msa0086000:CDS
GGTGGTTGTGGTTGTGATGG+AGG 0.441297 1_2:+66506052 Msa0086000:three_prime_UTR
CCACCTCCGGCTACCAAGTT+AGG 0.441500 1_2:+66505241 Msa0086000:CDS
GAAGAGGGTTGGTGGAAGTA+GGG 0.442303 1_2:-66504712 None:intergenic
TAACAATGGTGAGACTTTCA+TGG 0.445045 1_2:+66505330 Msa0086000:CDS
GATTCATATTCATAATTGGT+TGG 0.446330 1_2:-66504640 None:intergenic
TGCTCTCCGGCTGCACCACC+TGG 0.448295 1_2:-66505681 None:intergenic
AACGTAGCTTCGGTGGTAAC+CGG 0.450832 1_2:+66503186 Msa0086000:CDS
TAGGGTTTGTTGTTGATGGT+TGG 0.451052 1_2:-66504694 None:intergenic
GTTACAATAGGAATGCAAAA+AGG 0.452050 1_2:+66505494 Msa0086000:CDS
GATGCTTTGTATAAGGAGAA+AGG 0.452352 1_2:+66505622 Msa0086000:CDS
GACAATAAGTACCAAGAGAA+TGG 0.452972 1_2:+66505421 Msa0086000:CDS
ATTCATATTCATAATTGGTT+GGG 0.453229 1_2:-66504639 None:intergenic
CTTCTTTGTGGTTGTTGTTG+TGG 0.453255 1_2:-66505145 None:intergenic
TCAGAGAGTGATGTTGAAAG+AGG 0.453881 1_2:+66503146 Msa0086000:CDS
ATTGCAGAACAACAAAATCT+AGG 0.455502 1_2:+66505073 Msa0086000:CDS
AAGTTTCTTGTCGCGGCCAC+CGG 0.458447 1_2:-66503205 None:intergenic
GACAATTCTAGTGGCGGAGC+TGG 0.460427 1_2:+66505652 Msa0086000:CDS
CCTAACTTGGTAGCCGGAGG+TGG 0.464525 1_2:-66505241 None:intergenic
ATTGTTGTTGTTGCTGCTGC+GGG 0.465083 1_2:-66505276 None:intergenic
GCAGCAGCAACAACAACAAT+TGG 0.466013 1_2:+66505279 Msa0086000:CDS
AAAAGATGGAAGAGGGTTGG+TGG 0.469141 1_2:-66504720 None:intergenic
GTAGAAATGTTAGGAAAAGA+TGG 0.472744 1_2:-66504734 None:intergenic
GTTGGTGCTACACTTCTTTG+TGG 0.473011 1_2:-66505157 None:intergenic
TTCAAACCAGGTGGTGCAGC+CGG 0.473712 1_2:+66505675 Msa0086000:CDS
GGTGGCCGCCATTGCTGCTC+CGG 0.473929 1_2:-66505727 None:intergenic
CTTCTTCTTCTTCCTGTCCA+CGG 0.478198 1_2:-66505780 None:intergenic
GCCGCCAGCACAACCACCTC+CGG 0.478556 1_2:+66505228 Msa0086000:CDS
AAAATAGTTGAAGGATTGGA+TGG 0.481737 1_2:-66504671 None:intergenic
CTTTGTGGGATGAAGTTTCA+AGG 0.482165 1_2:+66503291 Msa0086000:CDS
TGTTGTGGTTGTTGTGGTGG+TGG 0.485804 1_2:-66505130 None:intergenic
GACTATTGTCGGGCCTAACT+TGG 0.485946 1_2:-66505254 None:intergenic
TGTTGTTGTGGTTGTTGTGG+TGG 0.486444 1_2:-66505133 None:intergenic
ATGACGGCGGAAGGTGGTGG+TGG 0.488218 1_2:+66503107 Msa0086000:CDS
TGCATTTCTTTGAACTTCTG+TGG 0.490979 1_2:-66504289 None:intergenic
TTGGAAAATAGTTGAAGGAT+TGG 0.493708 1_2:-66504675 None:intergenic
AAATTGGACAAGATTATTTG+AGG 0.496020 1_2:+66506371 Msa0086000:three_prime_UTR
TACCAAGAGAATGGACCAAA+AGG 0.499572 1_2:+66505430 Msa0086000:CDS
GGTGGTGCAGCCGGAGAGCA+TGG 0.502722 1_2:+66505684 Msa0086000:CDS
TGCAAAGAATCAATAGAGAG+AGG 0.504131 1_2:+66504981 Msa0086000:CDS
GTCGAGGAGGATGGTGGTGA+TGG 0.505301 1_2:+66506031 Msa0086000:three_prime_UTR
AGAAGCAACAATGTCACAAA+TGG 0.505725 1_2:+66504544 Msa0086000:CDS
GGCACCGTTGATGGTTCAGC+CGG 0.509705 1_2:+66505708 Msa0086000:CDS
GGTTGATGTTGATGAGTTGA+AGG 0.511906 1_2:-66504437 None:intergenic
ATGGATGAAAGTGGTGGTGG+TGG 0.513204 1_2:+66505853 Msa0086000:CDS
CAAGCTGATGCACCCACTGC+AGG 0.513358 1_2:-66505907 None:intergenic
TTGTATAAGGAGAAAGGAAA+GGG 0.521612 1_2:+66505628 Msa0086000:CDS
AACGGTGCCACCATGCTCTC+CGG 0.527103 1_2:-66505694 None:intergenic
TGGTGGTAACTTTGAGGTAG+TGG 0.527717 1_2:+66505876 Msa0086000:CDS
GCTGCTGCGGGACTATTGTC+GGG 0.529088 1_2:-66505264 None:intergenic
GGTTGTGGTTGTGATGGAGG+AGG 0.530198 1_2:+66506055 Msa0086000:three_prime_UTR
TGGTTCAGCCGGAGCAGCAA+TGG 0.533323 1_2:+66505719 Msa0086000:CDS
TGTGGTTGTTGTGGTGGTGG+CGG 0.535549 1_2:-66505127 None:intergenic
AATTGTTGTTGTTGCTGCTG+CGG 0.536612 1_2:-66505277 None:intergenic
CTTTCTATGTGTCCTATGGA+AGG 0.537762 1_2:-66502821 None:intergenic
ATTGGTGCTACCGCCGGTGT+TGG 0.539807 1_2:-66505181 None:intergenic
TGCTCCGGCTGAACCATCAA+CGG 0.540154 1_2:-66505712 None:intergenic
GAGGAGGATGGTGGTGATGG+TGG 0.543422 1_2:+66506034 Msa0086000:three_prime_UTR
GAAGATGGTGAACGTAGCTT+CGG 0.543473 1_2:+66503176 Msa0086000:CDS
GGTTGTTGTTGTGGTTGTTG+TGG 0.544443 1_2:-66505136 None:intergenic
GGTTGGTATGAAAATGATCA+AGG 0.547374 1_2:-66504415 None:intergenic
ATGTTAGGAAAAGATGGAAG+AGG 0.551505 1_2:-66504728 None:intergenic
GCTACCGCCGGTGTTGGTGT+TGG 0.551728 1_2:-66505175 None:intergenic
GTGGCCGCGACAAGAAACTT+TGG 0.552103 1_2:+66503208 Msa0086000:CDS
AAGGATCTCGAAAGAGGAAG+CGG 0.554153 1_2:+66504819 Msa0086000:CDS
GCCGGAGGTGGTTGTGCTGG+CGG 0.554813 1_2:-66505229 None:intergenic
TCCGAAGACACAATGGAAGA+AGG 0.558062 1_2:+66504800 Msa0086000:CDS
AGGAAAAGATGGAAGAGGGT+TGG 0.558092 1_2:-66504723 None:intergenic
TGGAAGAAGGATCTCGAAAG+AGG 0.558557 1_2:+66504813 Msa0086000:CDS
CAAGTGTTAAAGGTCCTTTG+TGG 0.560707 1_2:+66503276 Msa0086000:CDS
CCACCTAACATGACGGCGGA+AGG 0.561648 1_2:+66503098 Msa0086000:CDS
GTCGGGCCTAACTTGGTAGC+CGG 0.561976 1_2:-66505247 None:intergenic
TTCAGCCGGAGCAGCAATGG+CGG 0.565524 1_2:+66505722 Msa0086000:CDS
TGGAAGAATTTGAATATGTA+CGG 0.571673 1_2:+66506091 Msa0086000:three_prime_UTR
GATGGTTGGAAAATAGTTGA+AGG 0.571791 1_2:-66504680 None:intergenic
GATGGTGAACGTAGCTTCGG+TGG 0.573832 1_2:+66503179 Msa0086000:CDS
AAAATAAAAGAAACTATGCT+AGG 0.574714 1_2:+66503014 Msa0086000:exon
GAAAGTGACAGAGAAGCAAG+AGG 0.574790 1_2:+66504874 Msa0086000:CDS
CATGGAGCAGAACCGTGGAC+AGG 0.575210 1_2:+66505768 Msa0086000:CDS
TGGCGGAGCTGGTTCAAACC+AGG 0.576707 1_2:+66505663 Msa0086000:CDS
AAAGATATCTCCTCCCATAG+AGG 0.576930 1_2:-66505454 None:intergenic
TTTGAGGAGGGAAATTTGAT+GGG 0.577134 1_2:+66506131 Msa0086000:three_prime_UTR
TTGCATTCCTATTGTAACCG+AGG 0.579636 1_2:-66505489 None:intergenic
TTTGCAGAAGAGATTCTTGG+AGG 0.580580 1_2:+66504898 Msa0086000:CDS
GAAAGAGGAAGAGTTGAAGA+TGG 0.580801 1_2:+66503161 Msa0086000:CDS
TTGAGGAGGGAAATTTGATG+GGG 0.580811 1_2:+66506132 Msa0086000:three_prime_UTR
AGCGCCAAAGTTTCTTGTCG+CGG 0.581032 1_2:-66503212 None:intergenic
GAGGGATGAGTTCGTCAAGA+TGG 0.584449 1_2:+66505353 Msa0086000:CDS
GCAGGAGTTGTCGAGGAGGA+TGG 0.585356 1_2:+66506022 Msa0086000:three_prime_UTR
ATGTTGATGAGTTGAAGGGT+TGG 0.585562 1_2:-66504432 None:intergenic
GGTGGGGTCATAGATAGTGC+AGG 0.587167 1_2:+66506004 Msa0086000:three_prime_UTR
ATAATAAATTCACCTTCCAT+AGG 0.587233 1_2:+66502809 None:intergenic
AACAATGGTGAGACTTTCAT+GGG 0.588661 1_2:+66505331 Msa0086000:CDS
GGTCATTGAGAAACGCGAGC+AGG 0.589179 1_2:+66504919 Msa0086000:CDS
AAAGAGGAAGCGGAAATGGA+AGG 0.590185 1_2:+66504829 Msa0086000:CDS
AGATCTATTATCCAATTCCA+TGG 0.590202 1_2:+66504757 Msa0086000:CDS
GAAGAAGATATGGATGAAAG+TGG 0.590417 1_2:+66505844 Msa0086000:CDS
AAGTGTTAAAGGTCCTTTGT+GGG 0.591969 1_2:+66503277 Msa0086000:CDS
ACTGATATTGGTGCTACCGC+CGG 0.592470 1_2:-66505187 None:intergenic
TATCACAAGAGAACCAAAGA+TGG 0.592914 1_2:+66504338 Msa0086000:CDS
AAATAGTTGAAGGATTGGAT+GGG 0.593793 1_2:-66504670 None:intergenic
TGGACCAAAAGGTCCTCTAT+GGG 0.594236 1_2:+66505441 Msa0086000:CDS
GCAAAGAATCAATAGAGAGA+GGG 0.595028 1_2:+66504982 Msa0086000:CDS
TGTTAGGAAAAGATGGAAGA+GGG 0.595844 1_2:-66504727 None:intergenic
ATGTTATCTTCTCCCTGCTG+AGG 0.596975 1_2:-66505748 None:intergenic
ATGGTGAGACTTTCATGGGA+GGG 0.597885 1_2:+66505335 Msa0086000:CDS
CCTTCCGCCGTCATGTTAGG+TGG 0.598899 1_2:-66503098 None:intergenic
TTTGTATAAGGAGAAAGGAA+AGG 0.599126 1_2:+66505627 Msa0086000:CDS
ATGTACGGTGGAATGACACA+TGG 0.599343 1_2:+66506106 Msa0086000:three_prime_UTR
GAGGAGGAGAGATTCTCTTG+TGG 0.600742 1_2:+66506071 Msa0086000:three_prime_UTR
GGTGTTGGTGCCGAAATTTG+TGG 0.601888 1_2:-66504479 None:intergenic
TATAGTAGTAGCTAGTGAGA+AGG 0.602366 1_2:+66505932 Msa0086000:three_prime_UTR
GACGTCTTCCGAAGACACAA+TGG 0.603403 1_2:+66504793 Msa0086000:CDS
TGTAGCACCAACACCAACAC+CGG 0.603439 1_2:+66505168 Msa0086000:CDS
AGATAGTGCAGGAGTTGTCG+AGG 0.606737 1_2:+66506015 Msa0086000:three_prime_UTR
GATAAATCTGAGGACGAGCA+TGG 0.608244 1_2:+66505399 Msa0086000:CDS
GGCCGAGGTGGAAAATCAGA+TGG 0.609437 1_2:+66504359 Msa0086000:CDS
AGTGGCAAACAAACCTGCAG+TGG 0.609531 1_2:+66505894 Msa0086000:CDS
AGAACCAAAGATGGCCGAGG+TGG 0.611661 1_2:+66504347 Msa0086000:CDS
AACATGACGGCGGAAGGTGG+TGG 0.613643 1_2:+66503104 Msa0086000:CDS
GGGCCTAACTTGGTAGCCGG+AGG 0.614135 1_2:-66505244 None:intergenic
ATGGATGAAGATGATAAAGA+TGG 0.614880 1_2:+66505805 Msa0086000:CDS
AAGAGAACCAAAGATGGCCG+AGG 0.615515 1_2:+66504344 Msa0086000:CDS
AGCTGCACCACCTAACATGA+CGG 0.617434 1_2:+66503091 Msa0086000:CDS
AAGAATTTGAATATGTACGG+TGG 0.618964 1_2:+66506094 Msa0086000:three_prime_UTR
TGAGGAGGGAAATTTGATGG+GGG 0.620174 1_2:+66506133 Msa0086000:three_prime_UTR
CCTAACATGACGGCGGAAGG+TGG 0.623080 1_2:+66503101 Msa0086000:CDS
TTCAAGCATTGATAAATCTG+AGG 0.623494 1_2:+66505389 Msa0086000:CDS
TCAGGAAGCTAGCAGAACTT+GGG 0.624015 1_2:+66504264 Msa0086000:intron
CAATGGCGGCCACCTCAGCA+GGG 0.624870 1_2:+66505736 Msa0086000:CDS
GTTGATGTTGATGAGTTGAA+GGG 0.625077 1_2:-66504436 None:intergenic
GTTGGTATGAAAATGATCAA+GGG 0.626104 1_2:-66504414 None:intergenic
TTATCTTCTCCCTGCTGAGG+TGG 0.627005 1_2:-66505745 None:intergenic
GATATGGATGAAAGTGGTGG+TGG 0.629728 1_2:+66505850 Msa0086000:CDS
GTCTTCGGAAGACGTCGAGT+AGG 0.632078 1_2:-66504786 None:intergenic
TCTTTAGCAATGAAGAACCT+CGG 0.632836 1_2:+66505472 Msa0086000:CDS
AGAGTTAAGATAGAGAGAGT+CGG 0.643314 1_2:+66506260 Msa0086000:three_prime_UTR
GTAGCTTCGGTGGTAACCGG+TGG 0.643526 1_2:+66503189 Msa0086000:CDS
TAGTGCAGGAGTTGTCGAGG+AGG 0.646241 1_2:+66506018 Msa0086000:three_prime_UTR
TGAAGATGATAAAGATGGTG+AGG 0.649200 1_2:+66505810 Msa0086000:CDS
GTAACAACTTGTGACGGTGT+TGG 0.650468 1_2:-66504494 None:intergenic
GTTGGTGCCGAAATTTGTGG+TGG 0.654114 1_2:-66504476 None:intergenic
CGGAGCTGGTTCAAACCAGG+TGG 0.657039 1_2:+66505666 Msa0086000:CDS
TGCATGAGGGATACTTAGAG+TGG 0.657060 1_2:-66504573 None:intergenic
GTGGCAAACAAACCTGCAGT+GGG 0.663059 1_2:+66505895 Msa0086000:CDS
CGTCGAGTAGGAGCTAGCCA+TGG 0.663851 1_2:-66504774 None:intergenic
ACCAAAAGGTCCTCTATGGG+AGG 0.664112 1_2:+66505444 Msa0086000:CDS
TCAGCAGGGAGAAGATAACA+TGG 0.666074 1_2:+66505750 Msa0086000:CDS
TTGATGGAACAGTTGCATGA+GGG 0.669086 1_2:-66504586 None:intergenic
GAGTTGTTAGAGAAGAAGCG+TGG 0.669199 1_2:+66504945 Msa0086000:CDS
GGTGCAGCCGGAGAGCATGG+TGG 0.675557 1_2:+66505687 Msa0086000:CDS
ATTGATGGAACAGTTGCATG+AGG 0.676758 1_2:-66504587 None:intergenic
GGAGTTGTCGAGGAGGATGG+TGG 0.678808 1_2:+66506025 Msa0086000:three_prime_UTR
GCAGTTGTAACAACTTGTGA+CGG 0.679663 1_2:-66504500 None:intergenic
GATAACATGGAGCAGAACCG+TGG 0.681082 1_2:+66505763 Msa0086000:CDS
ATTGTGAAAGTTGATAACAA+TGG 0.690514 1_2:+66505316 Msa0086000:CDS
GTATAAGGAGAAAGGAAAGG+GGG 0.692361 1_2:+66505630 Msa0086000:CDS
AATGGTGAGACTTTCATGGG+AGG 0.694246 1_2:+66505334 Msa0086000:CDS
TGTACGGTGGAATGACACAT+GGG 0.698113 1_2:+66506107 Msa0086000:three_prime_UTR
CTTGAAACTTCATCCCACAA+AGG 0.698850 1_2:-66503290 None:intergenic
GGCGGTAGCACCAATATCAG+TGG 0.699903 1_2:+66505189 Msa0086000:CDS
TGCACCACCTAACATGACGG+CGG 0.703359 1_2:+66503094 Msa0086000:CDS
AGCACCAACACCAACACCGG+CGG 0.703596 1_2:+66505171 Msa0086000:CDS
TGTATAAGGAGAAAGGAAAG+GGG 0.707368 1_2:+66505629 Msa0086000:CDS
GAAGATATGGATGAAAGTGG+TGG 0.720036 1_2:+66505847 Msa0086000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACAAATTTTTTGTTTATT+TGG + chr1_2:66503351-66503370 Msa0086000:intron 10.0%
!! TGAAAAAATAAATTAGAAAA+AGG - chr1_2:66503583-66503602 None:intergenic 10.0%
!!! TCTTTACTTTTTTTTTTTTT+TGG + chr1_2:66504214-66504233 Msa0086000:intron 10.0%
!!! TAAAATTTGTTTATTTTTTG+GGG + chr1_2:66506204-66506223 Msa0086000:three_prime_UTR 10.0%
!! AAAAATAAATTAGAAAAAGG+AGG - chr1_2:66503580-66503599 None:intergenic 15.0%
!!! ATTTATTTTTTCATTGCTTT+TGG + chr1_2:66503590-66503609 Msa0086000:intron 15.0%
!! AACAAAAGAAATAAAAACAT+GGG - chr1_2:66504080-66504099 None:intergenic 15.0%
!! AAACAAAAGAAATAAAAACA+TGG - chr1_2:66504081-66504100 None:intergenic 15.0%
!!! AAAATTTGTTTATTTTTTGG+GGG + chr1_2:66506205-66506224 Msa0086000:three_prime_UTR 15.0%
!! ATAAAATACAACCTTAATTA+AGG - chr1_2:66506321-66506340 None:intergenic 15.0%
!!! TGAATTCTTTGAATTTTGAT+GGG - chr1_2:66502914-66502933 None:intergenic 20.0%
!! AAAATAAAAGAAACTATGCT+AGG + chr1_2:66503014-66503033 Msa0086000:exon 20.0%
!! AAAGTAACTGAAATAGATAA+AGG - chr1_2:66503978-66503997 None:intergenic 20.0%
!! ACAAATGCATGATATAAAAA+AGG - chr1_2:66504143-66504162 None:intergenic 20.0%
!! TCTCACTTTAATTATTAATC+AGG + chr1_2:66504246-66504265 Msa0086000:intron 20.0%
!! ATTCATATTCATAATTGGTT+GGG - chr1_2:66504642-66504661 None:intergenic 20.0%
!! ATAAACAAAAATGAGTTTGT+TGG + chr1_2:66505983-66506002 Msa0086000:three_prime_UTR 20.0%
!!! AAATTTGTTTATTTTTTGGG+GGG + chr1_2:66506206-66506225 Msa0086000:three_prime_UTR 20.0%
!!! TTCATCTTGTTTTATGTTTA+TGG + chr1_2:66506342-66506361 Msa0086000:three_prime_UTR 20.0%
!!! GAATTCTTTGAATTTTGATG+GGG - chr1_2:66502913-66502932 None:intergenic 25.0%
!! GTGAATTCTTTGAATTTTGA+TGG - chr1_2:66502915-66502934 None:intergenic 25.0%
! AACTGAGAGAAAAAAAATAG+AGG - chr1_2:66502940-66502959 None:intergenic 25.0%
! AATACAAAAGACTAAGAAAC+CGG - chr1_2:66503538-66503557 None:intergenic 25.0%
!! TTAGAAAAAGGAGGATTTTA+AGG - chr1_2:66503571-66503590 None:intergenic 25.0%
!!! TATTTTTTCATTGCTTTTGG+TGG + chr1_2:66503593-66503612 Msa0086000:intron 25.0%
! ATGTGAAGTCTATATGATTT+GGG + chr1_2:66503662-66503681 Msa0086000:intron 25.0%
!!! ATTCAAGTTGGTAACTTATT+TGG - chr1_2:66503746-66503765 None:intergenic 25.0%
!! TTTGATAACTCAATTCAAGT+TGG - chr1_2:66503758-66503777 None:intergenic 25.0%
!! CATTTCTTTTCATCAATTCA+TGG + chr1_2:66503889-66503908 Msa0086000:intron 25.0%
! GATTCATATTCATAATTGGT+TGG - chr1_2:66504643-66504662 None:intergenic 25.0%
! GTAGGATTCATATTCATAAT+TGG - chr1_2:66504647-66504666 None:intergenic 25.0%
! AATAGATCTGTAGAAATGTT+AGG - chr1_2:66504746-66504765 None:intergenic 25.0%
!!! ATTGTGAAAGTTGATAACAA+TGG + chr1_2:66505316-66505335 Msa0086000:CDS 25.0%
!! AAAAAGGTGCAAAGAAAAAT+GGG + chr1_2:66505510-66505529 Msa0086000:CDS 25.0%
! TGGAAGAATTTGAATATGTA+CGG + chr1_2:66506091-66506110 Msa0086000:three_prime_UTR 25.0%
! TATCTTAACTCTTCTCTAAT+TGG - chr1_2:66506252-66506271 None:intergenic 25.0%
!!! ATCTTGTTTTATGTTTATGG+TGG + chr1_2:66506345-66506364 Msa0086000:three_prime_UTR 25.0%
! AAATTGGACAAGATTATTTG+AGG + chr1_2:66506371-66506390 Msa0086000:three_prime_UTR 25.0%
TGAGAGAAAAAAAATAGAGG+TGG - chr1_2:66502937-66502956 None:intergenic 30.0%
AAGAAGCAAAAACCAAATGA+TGG - chr1_2:66503512-66503531 None:intergenic 30.0%
!! TTGGTTTTTGCTTCTTTTTC+CGG + chr1_2:66503516-66503535 Msa0086000:intron 30.0%
GATGTGAAGTCTATATGATT+TGG + chr1_2:66503661-66503680 Msa0086000:intron 30.0%
!! AGTTGGTAACCGAAATAAAA+GGG - chr1_2:66503799-66503818 None:intergenic 30.0%
AAAATGCATGAACTGAAGTT+AGG - chr1_2:66503859-66503878 None:intergenic 30.0%
! TTCAGTTCATGCATTTTTCA+TGG + chr1_2:66503862-66503881 Msa0086000:intron 30.0%
! TCAGTTCATGCATTTTTCAT+GGG + chr1_2:66503863-66503882 Msa0086000:intron 30.0%
AAGTAGTGTTAATTGCAACA+TGG - chr1_2:66504016-66504035 None:intergenic 30.0%
GTTGGTATGAAAATGATCAA+GGG - chr1_2:66504417-66504436 None:intergenic 30.0%
!!! TTTTGAGGCATTGAAATTGA+TGG - chr1_2:66504605-66504624 None:intergenic 30.0%
!! GTAGTTGCAATATTGTTTTG+AGG - chr1_2:66504620-66504639 None:intergenic 30.0%
AAATAGTTGAAGGATTGGAT+GGG - chr1_2:66504673-66504692 None:intergenic 30.0%
AAAATAGTTGAAGGATTGGA+TGG - chr1_2:66504674-66504693 None:intergenic 30.0%
TTGGAAAATAGTTGAAGGAT+TGG - chr1_2:66504678-66504697 None:intergenic 30.0%
GTAGAAATGTTAGGAAAAGA+TGG - chr1_2:66504737-66504756 None:intergenic 30.0%
AGATCTATTATCCAATTCCA+TGG + chr1_2:66504757-66504776 Msa0086000:CDS 30.0%
ATTGCAGAACAACAAAATCT+AGG + chr1_2:66505073-66505092 Msa0086000:CDS 30.0%
!! TTAACTTGTACCACTGATAT+TGG - chr1_2:66505202-66505221 None:intergenic 30.0%
! ACAACAATTGGTGACAAATA+TGG + chr1_2:66505291-66505310 Msa0086000:CDS 30.0%
AATGCTTGAACTTCAACTTT+CGG - chr1_2:66505379-66505398 None:intergenic 30.0%
!! TTCAAGCATTGATAAATCTG+AGG + chr1_2:66505389-66505408 Msa0086000:CDS 30.0%
GTTACAATAGGAATGCAAAA+AGG + chr1_2:66505494-66505513 Msa0086000:CDS 30.0%
! CAAAAAGGTGCAAAGAAAAA+TGG + chr1_2:66505509-66505528 Msa0086000:CDS 30.0%
!!! ATGTCCTTATTTTCATCAGT+TGG + chr1_2:66505600-66505619 Msa0086000:CDS 30.0%
TTTGTATAAGGAGAAAGGAA+AGG + chr1_2:66505627-66505646 Msa0086000:CDS 30.0%
TTGTATAAGGAGAAAGGAAA+GGG + chr1_2:66505628-66505647 Msa0086000:CDS 30.0%
ATGGATGAAGATGATAAAGA+TGG + chr1_2:66505805-66505824 Msa0086000:CDS 30.0%
AGAAGATGATGAAGAAGATA+TGG + chr1_2:66505834-66505853 Msa0086000:CDS 30.0%
!! AACAAAAATGAGTTTGTTGG+TGG + chr1_2:66505986-66506005 Msa0086000:three_prime_UTR 30.0%
!! ACAAAAATGAGTTTGTTGGT+GGG + chr1_2:66505987-66506006 Msa0086000:three_prime_UTR 30.0%
AAGAATTTGAATATGTACGG+TGG + chr1_2:66506094-66506113 Msa0086000:three_prime_UTR 30.0%
AGCAATAGAGACCTTAATTA+AGG + chr1_2:66506307-66506326 Msa0086000:three_prime_UTR 30.0%
! ATGTTTATGGTGGTGTAAAT+TGG + chr1_2:66506355-66506374 Msa0086000:three_prime_UTR 30.0%
TTTAAGCATACGATCGGATA+TGG + chr1_2:66503235-66503254 Msa0086000:CDS 35.0%
TTTCGAGATGCAAGTGTTAA+AGG + chr1_2:66503266-66503285 Msa0086000:CDS 35.0%
AAGTGTTAAAGGTCCTTTGT+GGG + chr1_2:66503277-66503296 Msa0086000:CDS 35.0%
ATTCATGTGATGTAGAGATC+TGG + chr1_2:66503465-66503484 Msa0086000:intron 35.0%
TTCATGTGATGTAGAGATCT+GGG + chr1_2:66503466-66503485 Msa0086000:intron 35.0%
!! TTCTTTCCCCCCTTTTATTT+CGG + chr1_2:66503787-66503806 Msa0086000:intron 35.0%
! TTGGTAACCGAAATAAAAGG+GGG - chr1_2:66503797-66503816 None:intergenic 35.0%
!! GTTGGTAACCGAAATAAAAG+GGG - chr1_2:66503798-66503817 None:intergenic 35.0%
!! GAGTTGGTAACCGAAATAAA+AGG - chr1_2:66503800-66503819 None:intergenic 35.0%
AATTGCAACATGGAAATGCA+AGG - chr1_2:66504006-66504025 None:intergenic 35.0%
TGCATTTCTTTGAACTTCTG+TGG - chr1_2:66504292-66504311 None:intergenic 35.0%
TATCACAAGAGAACCAAAGA+TGG + chr1_2:66504338-66504357 Msa0086000:CDS 35.0%
! GGTTGGTATGAAAATGATCA+AGG - chr1_2:66504418-66504437 None:intergenic 35.0%
! GTTGATGTTGATGAGTTGAA+GGG - chr1_2:66504439-66504458 None:intergenic 35.0%
AGCAAAACCACCACAAATTT+CGG + chr1_2:66504469-66504488 Msa0086000:CDS 35.0%
! GACATTGTTGCTTCTGTTAT+TGG - chr1_2:66504539-66504558 None:intergenic 35.0%
AGAAGCAACAATGTCACAAA+TGG + chr1_2:66504544-66504563 Msa0086000:CDS 35.0%
GATGGTTGGAAAATAGTTGA+AGG - chr1_2:66504683-66504702 None:intergenic 35.0%
TGTTAGGAAAAGATGGAAGA+GGG - chr1_2:66504730-66504749 None:intergenic 35.0%
ATGTTAGGAAAAGATGGAAG+AGG - chr1_2:66504731-66504750 None:intergenic 35.0%
TGCAAAGAATCAATAGAGAG+AGG + chr1_2:66504981-66505000 Msa0086000:CDS 35.0%
GCAAAGAATCAATAGAGAGA+GGG + chr1_2:66504982-66505001 Msa0086000:CDS 35.0%
TAACAATGGTGAGACTTTCA+TGG + chr1_2:66505330-66505349 Msa0086000:CDS 35.0%
AACAATGGTGAGACTTTCAT+GGG + chr1_2:66505331-66505350 Msa0086000:CDS 35.0%
GACAATAAGTACCAAGAGAA+TGG + chr1_2:66505421-66505440 Msa0086000:CDS 35.0%
TCTTTAGCAATGAAGAACCT+CGG + chr1_2:66505472-66505491 Msa0086000:CDS 35.0%
AGGACATGTCTTTGAATCTT+CGG - chr1_2:66505587-66505606 None:intergenic 35.0%
GCATCCAACTGATGAAAATA+AGG - chr1_2:66505607-66505626 None:intergenic 35.0%
TCAGTTGGATGCTTTGTATA+AGG + chr1_2:66505615-66505634 Msa0086000:CDS 35.0%
GATGCTTTGTATAAGGAGAA+AGG + chr1_2:66505622-66505641 Msa0086000:CDS 35.0%
TGTATAAGGAGAAAGGAAAG+GGG + chr1_2:66505629-66505648 Msa0086000:CDS 35.0%
ACAGGAAGAAGAAGAAGATA+TGG + chr1_2:66505786-66505805 Msa0086000:CDS 35.0%
TGAAGATGATAAAGATGGTG+AGG + chr1_2:66505810-66505829 Msa0086000:CDS 35.0%
GAAGAAGATATGGATGAAAG+TGG + chr1_2:66505844-66505863 Msa0086000:CDS 35.0%
TATAGTAGTAGCTAGTGAGA+AGG + chr1_2:66505932-66505951 Msa0086000:three_prime_UTR 35.0%
!! CAAAAATGAGTTTGTTGGTG+GGG + chr1_2:66505988-66506007 Msa0086000:three_prime_UTR 35.0%
!! TTTTGAGGAGGGAAATTTGA+TGG + chr1_2:66506130-66506149 Msa0086000:three_prime_UTR 35.0%
TTTGAGGAGGGAAATTTGAT+GGG + chr1_2:66506131-66506150 Msa0086000:three_prime_UTR 35.0%
AGAGTTAAGATAGAGAGAGT+CGG + chr1_2:66506260-66506279 Msa0086000:three_prime_UTR 35.0%
CTTTCTATGTGTCCTATGGA+AGG - chr1_2:66502824-66502843 None:intergenic 40.0%
CTCTCTTTCTATGTGTCCTA+TGG - chr1_2:66502828-66502847 None:intergenic 40.0%
TCAGAGAGTGATGTTGAAAG+AGG + chr1_2:66503146-66503165 Msa0086000:CDS 40.0%
GAAAGAGGAAGAGTTGAAGA+TGG + chr1_2:66503161-66503180 Msa0086000:CDS 40.0%
CAAGTGTTAAAGGTCCTTTG+TGG + chr1_2:66503276-66503295 Msa0086000:CDS 40.0%
CTTGAAACTTCATCCCACAA+AGG - chr1_2:66503293-66503312 None:intergenic 40.0%
CTTTGTGGGATGAAGTTTCA+AGG + chr1_2:66503291-66503310 Msa0086000:CDS 40.0%
CTTGCTTCAACTCCATCATT+TGG + chr1_2:66503497-66503516 Msa0086000:intron 40.0%
TGGTAACCGAAATAAAAGGG+GGG - chr1_2:66503796-66503815 None:intergenic 40.0%
ATTTCGGTTACCAACTCTCA+TGG + chr1_2:66503803-66503822 Msa0086000:intron 40.0%
TTTCGGTTACCAACTCTCAT+GGG + chr1_2:66503804-66503823 Msa0086000:intron 40.0%
CTTCAATTTCCCATGAGAGT+TGG - chr1_2:66503816-66503835 None:intergenic 40.0%
! TACCATCTGATTTTCCACCT+CGG - chr1_2:66504364-66504383 None:intergenic 40.0%
! ATGTTGATGAGTTGAAGGGT+TGG - chr1_2:66504435-66504454 None:intergenic 40.0%
! GGTTGATGTTGATGAGTTGA+AGG - chr1_2:66504440-66504459 None:intergenic 40.0%
!! GGTGGTTTTGCTATGTTTTG+AGG - chr1_2:66504461-66504480 None:intergenic 40.0%
GCAGTTGTAACAACTTGTGA+CGG - chr1_2:66504503-66504522 None:intergenic 40.0%
TTGATGGAACAGTTGCATGA+GGG - chr1_2:66504589-66504608 None:intergenic 40.0%
ATTGATGGAACAGTTGCATG+AGG - chr1_2:66504590-66504609 None:intergenic 40.0%
!! TAGGGTTTGTTGTTGATGGT+TGG - chr1_2:66504697-66504716 None:intergenic 40.0%
!! GAAGTAGGGTTTGTTGTTGA+TGG - chr1_2:66504701-66504720 None:intergenic 40.0%
TCCTTCTTCCATTGTGTCTT+CGG - chr1_2:66504804-66504823 None:intergenic 40.0%
GGATTTGCAGAAGAGATTCT+TGG + chr1_2:66504895-66504914 Msa0086000:CDS 40.0%
TTTGCAGAAGAGATTCTTGG+AGG + chr1_2:66504898-66504917 Msa0086000:CDS 40.0%
! CTTCTTTGTGGTTGTTGTTG+TGG - chr1_2:66505148-66505167 None:intergenic 40.0%
! AATTGTTGTTGTTGCTGCTG+CGG - chr1_2:66505280-66505299 None:intergenic 40.0%
TACCAAGAGAATGGACCAAA+AGG + chr1_2:66505430-66505449 Msa0086000:CDS 40.0%
AAAGATATCTCCTCCCATAG+AGG - chr1_2:66505457-66505476 None:intergenic 40.0%
TGAAGAACCTCGGTTACAAT+AGG + chr1_2:66505482-66505501 Msa0086000:CDS 40.0%
TTGCATTCCTATTGTAACCG+AGG - chr1_2:66505492-66505511 None:intergenic 40.0%
GGACATGTCTTTGAATCTTC+GGG - chr1_2:66505586-66505605 None:intergenic 40.0%
GTATAAGGAGAAAGGAAAGG+GGG + chr1_2:66505630-66505649 Msa0086000:CDS 40.0%
GAAGATATGGATGAAAGTGG+TGG + chr1_2:66505847-66505866 Msa0086000:CDS 40.0%
TTGAGGAGGGAAATTTGATG+GGG + chr1_2:66506132-66506151 Msa0086000:three_prime_UTR 40.0%
!! GGTGACTCAGCTGTTTTAAG+TGG + chr1_2:66503035-66503054 Msa0086000:CDS 45.0%
!! GACTCAGCTGTTTTAAGTGG+TGG + chr1_2:66503038-66503057 Msa0086000:CDS 45.0%
!! TCAGCTGTTTTAAGTGGTGG+CGG + chr1_2:66503041-66503060 Msa0086000:CDS 45.0%
GAAGATGGTGAACGTAGCTT+CGG + chr1_2:66503176-66503195 Msa0086000:CDS 45.0%
! GGCGCTTTTAAGCATACGAT+CGG + chr1_2:66503229-66503248 Msa0086000:CDS 45.0%
ATCAGGAAGCTAGCAGAACT+TGG + chr1_2:66504263-66504282 Msa0086000:intron 45.0%
TCAGGAAGCTAGCAGAACTT+GGG + chr1_2:66504264-66504283 Msa0086000:intron 45.0%
GTAACAACTTGTGACGGTGT+TGG - chr1_2:66504497-66504516 None:intergenic 45.0%
TGCATGAGGGATACTTAGAG+TGG - chr1_2:66504576-66504595 None:intergenic 45.0%
GAAGGATTGGATGGGATTGT+AGG - chr1_2:66504665-66504684 None:intergenic 45.0%
AAAAGATGGAAGAGGGTTGG+TGG - chr1_2:66504723-66504742 None:intergenic 45.0%
AGGAAAAGATGGAAGAGGGT+TGG - chr1_2:66504726-66504745 None:intergenic 45.0%
TCCGAAGACACAATGGAAGA+AGG + chr1_2:66504800-66504819 Msa0086000:CDS 45.0%
TGGAAGAAGGATCTCGAAAG+AGG + chr1_2:66504813-66504832 Msa0086000:CDS 45.0%
AAGGATCTCGAAAGAGGAAG+CGG + chr1_2:66504819-66504838 Msa0086000:CDS 45.0%
AAAGAGGAAGCGGAAATGGA+AGG + chr1_2:66504829-66504848 Msa0086000:CDS 45.0%
GAAAGTGACAGAGAAGCAAG+AGG + chr1_2:66504874-66504893 Msa0086000:CDS 45.0%
GAGTTGTTAGAGAAGAAGCG+TGG + chr1_2:66504945-66504964 Msa0086000:CDS 45.0%
TGTTGTTGTGGTTGTTGTGG+TGG - chr1_2:66505136-66505155 None:intergenic 45.0%
! GGTTGTTGTTGTGGTTGTTG+TGG - chr1_2:66505139-66505158 None:intergenic 45.0%
!! GTTGGTGCTACACTTCTTTG+TGG - chr1_2:66505160-66505179 None:intergenic 45.0%
! ATTGTTGTTGTTGCTGCTGC+GGG - chr1_2:66505279-66505298 None:intergenic 45.0%
GCAGCAGCAACAACAACAAT+TGG + chr1_2:66505279-66505298 Msa0086000:CDS 45.0%
AATGGTGAGACTTTCATGGG+AGG + chr1_2:66505334-66505353 Msa0086000:CDS 45.0%
ATGGTGAGACTTTCATGGGA+GGG + chr1_2:66505335-66505354 Msa0086000:CDS 45.0%
GATAAATCTGAGGACGAGCA+TGG + chr1_2:66505399-66505418 Msa0086000:CDS 45.0%
! GACCTTTTGGTCCATTCTCT+TGG - chr1_2:66505435-66505454 None:intergenic 45.0%
ATGGACCAAAAGGTCCTCTA+TGG + chr1_2:66505440-66505459 Msa0086000:CDS 45.0%
TGGACCAAAAGGTCCTCTAT+GGG + chr1_2:66505441-66505460 Msa0086000:CDS 45.0%
ATGTTATCTTCTCCCTGCTG+AGG - chr1_2:66505751-66505770 None:intergenic 45.0%
TCAGCAGGGAGAAGATAACA+TGG + chr1_2:66505750-66505769 Msa0086000:CDS 45.0%
CTTCTTCTTCTTCCTGTCCA+CGG - chr1_2:66505783-66505802 None:intergenic 45.0%
GATATGGATGAAAGTGGTGG+TGG + chr1_2:66505850-66505869 Msa0086000:CDS 45.0%
!! TGGTGGTAACTTTGAGGTAG+TGG + chr1_2:66505876-66505895 Msa0086000:CDS 45.0%
AGAAGGAGCAGCTGCAAAAA+GGG + chr1_2:66505949-66505968 Msa0086000:three_prime_UTR 45.0%
ATGTACGGTGGAATGACACA+TGG + chr1_2:66506106-66506125 Msa0086000:three_prime_UTR 45.0%
TGTACGGTGGAATGACACAT+GGG + chr1_2:66506107-66506126 Msa0086000:three_prime_UTR 45.0%
! GGAATGACACATGGGTTTTG+AGG + chr1_2:66506115-66506134 Msa0086000:three_prime_UTR 45.0%
!!! ATGACACATGGGTTTTGAGG+AGG + chr1_2:66506118-66506137 Msa0086000:three_prime_UTR 45.0%
!!! TGACACATGGGTTTTGAGGA+GGG + chr1_2:66506119-66506138 Msa0086000:three_prime_UTR 45.0%
TGAGGAGGGAAATTTGATGG+GGG + chr1_2:66506133-66506152 Msa0086000:three_prime_UTR 45.0%
!!! TATAAAATTTGTTTATTTTT+TGG + chr1_2:66506202-66506221 Msa0086000:three_prime_UTR 5.0%
!!! ATAAAATTTGTTTATTTTTT+GGG + chr1_2:66506203-66506222 Msa0086000:three_prime_UTR 5.0%
AGCTGCACCACCTAACATGA+CGG + chr1_2:66503091-66503110 Msa0086000:CDS 50.0%
AACGTAGCTTCGGTGGTAAC+CGG + chr1_2:66503186-66503205 Msa0086000:CDS 50.0%
AGCGCCAAAGTTTCTTGTCG+CGG - chr1_2:66503215-66503234 None:intergenic 50.0%
AAGAGAACCAAAGATGGCCG+AGG + chr1_2:66504344-66504363 Msa0086000:CDS 50.0%
! TTTTCCACCTCGGCCATCTT+TGG - chr1_2:66504354-66504373 None:intergenic 50.0%
!! GTTGGTGCCGAAATTTGTGG+TGG - chr1_2:66504479-66504498 None:intergenic 50.0%
!! GGTGTTGGTGCCGAAATTTG+TGG - chr1_2:66504482-66504501 None:intergenic 50.0%
!! GAAGAGGGTTGGTGGAAGTA+GGG - chr1_2:66504715-66504734 None:intergenic 50.0%
GTAGGAGCTAGCCATGGAAT+TGG - chr1_2:66504771-66504790 None:intergenic 50.0%
GACGTCTTCCGAAGACACAA+TGG + chr1_2:66504793-66504812 Msa0086000:CDS 50.0%
CTCGAAAGAGGAAGCGGAAA+TGG + chr1_2:66504825-66504844 Msa0086000:CDS 50.0%
TGTTGTGGTTGTTGTGGTGG+TGG - chr1_2:66505133-66505152 None:intergenic 50.0%
TGTAGCACCAACACCAACAC+CGG + chr1_2:66505168-66505187 Msa0086000:CDS 50.0%
!! ACTGATATTGGTGCTACCGC+CGG - chr1_2:66505190-66505209 None:intergenic 50.0%
GACTATTGTCGGGCCTAACT+TGG - chr1_2:66505257-66505276 None:intergenic 50.0%
GAGGGATGAGTTCGTCAAGA+TGG + chr1_2:66505353-66505372 Msa0086000:CDS 50.0%
ACCAAAAGGTCCTCTATGGG+AGG + chr1_2:66505444-66505463 Msa0086000:CDS 50.0%
! TCCTCCCATAGAGGACCTTT+TGG - chr1_2:66505448-66505467 None:intergenic 50.0%
GGAAAGGGGGACAATTCTAG+TGG + chr1_2:66505643-66505662 Msa0086000:CDS 50.0%
AAGGGGGACAATTCTAGTGG+CGG + chr1_2:66505646-66505665 Msa0086000:CDS 50.0%
TTATCTTCTCCCTGCTGAGG+TGG - chr1_2:66505748-66505767 None:intergenic 50.0%
GATAACATGGAGCAGAACCG+TGG + chr1_2:66505763-66505782 Msa0086000:CDS 50.0%
!! ATGGATGAAAGTGGTGGTGG+TGG + chr1_2:66505853-66505872 Msa0086000:CDS 50.0%
!! TGGTGGTGGTGGTAACTTTG+AGG + chr1_2:66505870-66505889 Msa0086000:CDS 50.0%
AGTGGCAAACAAACCTGCAG+TGG + chr1_2:66505894-66505913 Msa0086000:CDS 50.0%
GTGGCAAACAAACCTGCAGT+GGG + chr1_2:66505895-66505914 Msa0086000:CDS 50.0%
GAGAAGGAGCAGCTGCAAAA+AGG + chr1_2:66505948-66505967 Msa0086000:three_prime_UTR 50.0%
AGATAGTGCAGGAGTTGTCG+AGG + chr1_2:66506015-66506034 Msa0086000:three_prime_UTR 50.0%
! GATGGTGGTTGTGGTTGTGA+TGG + chr1_2:66506049-66506068 Msa0086000:three_prime_UTR 50.0%
GAGGAGGAGAGATTCTCTTG+TGG + chr1_2:66506071-66506090 Msa0086000:three_prime_UTR 50.0%
GAGGGAAATTTGATGGGGGT+TGG + chr1_2:66506137-66506156 Msa0086000:three_prime_UTR 50.0%
!! TTTGATGGGGGTTGGTTCGT+TGG + chr1_2:66506145-66506164 Msa0086000:three_prime_UTR 50.0%
!!! GCTGTTTTAAGTGGTGGCGG+TGG + chr1_2:66503044-66503063 Msa0086000:CDS 55.0%
TGCACCACCTAACATGACGG+CGG + chr1_2:66503094-66503113 Msa0086000:CDS 55.0%
GATGGTGAACGTAGCTTCGG+TGG + chr1_2:66503179-66503198 Msa0086000:CDS 55.0%
AAGTTTCTTGTCGCGGCCAC+CGG - chr1_2:66503208-66503227 None:intergenic 55.0%
GTGGCCGCGACAAGAAACTT+TGG + chr1_2:66503208-66503227 Msa0086000:CDS 55.0%
AGAACCAAAGATGGCCGAGG+TGG + chr1_2:66504347-66504366 Msa0086000:CDS 55.0%
GGCCGAGGTGGAAAATCAGA+TGG + chr1_2:66504359-66504378 Msa0086000:CDS 55.0%
!! GGAAGAGGGTTGGTGGAAGT+AGG - chr1_2:66504716-66504735 None:intergenic 55.0%
GTCTTCGGAAGACGTCGAGT+AGG - chr1_2:66504789-66504808 None:intergenic 55.0%
GGTCATTGAGAAACGCGAGC+AGG + chr1_2:66504919-66504938 Msa0086000:CDS 55.0%
!! TGTGGTTGTTGTGGTGGTGG+CGG - chr1_2:66505130-66505149 None:intergenic 55.0%
GGCGGTAGCACCAATATCAG+TGG + chr1_2:66505189-66505208 Msa0086000:CDS 55.0%
TGCTGCTGCGGGACTATTGT+CGG - chr1_2:66505268-66505287 None:intergenic 55.0%
! GACAATTCTAGTGGCGGAGC+TGG + chr1_2:66505652-66505671 Msa0086000:CDS 55.0%
TTCAAACCAGGTGGTGCAGC+CGG + chr1_2:66505675-66505694 Msa0086000:CDS 55.0%
TGCTCCGGCTGAACCATCAA+CGG - chr1_2:66505715-66505734 None:intergenic 55.0%
!! GATGAAAGTGGTGGTGGTGG+TGG + chr1_2:66505856-66505875 Msa0086000:CDS 55.0%
GGTGGGGTCATAGATAGTGC+AGG + chr1_2:66506004-66506023 Msa0086000:three_prime_UTR 55.0%
TAGTGCAGGAGTTGTCGAGG+AGG + chr1_2:66506018-66506037 Msa0086000:three_prime_UTR 55.0%
!! GATGGTGGTGATGGTGGTTG+TGG + chr1_2:66506040-66506059 Msa0086000:three_prime_UTR 55.0%
GGTGGTTGTGGTTGTGATGG+AGG + chr1_2:66506052-66506071 Msa0086000:three_prime_UTR 55.0%
! GGTTGTGGTTGTGATGGAGG+AGG + chr1_2:66506055-66506074 Msa0086000:three_prime_UTR 55.0%
CCTTCCGCCGTCATGTTAGG+TGG - chr1_2:66503101-66503120 None:intergenic 60.0%
CCACCTAACATGACGGCGGA+AGG + chr1_2:66503098-66503117 Msa0086000:CDS 60.0%
CCACCTTCCGCCGTCATGTT+AGG - chr1_2:66503104-66503123 None:intergenic 60.0%
CCTAACATGACGGCGGAAGG+TGG + chr1_2:66503101-66503120 Msa0086000:CDS 60.0%
AACATGACGGCGGAAGGTGG+TGG + chr1_2:66503104-66503123 Msa0086000:CDS 60.0%
!! GAAGGTGGTGGTGGTGGAGT+TGG + chr1_2:66503116-66503135 Msa0086000:CDS 60.0%
GTAGCTTCGGTGGTAACCGG+TGG + chr1_2:66503189-66503208 Msa0086000:CDS 60.0%
CGTCGAGTAGGAGCTAGCCA+TGG - chr1_2:66504777-66504796 None:intergenic 60.0%
AGCACCAACACCAACACCGG+CGG + chr1_2:66505171-66505190 Msa0086000:CDS 60.0%
!! ATTGGTGCTACCGCCGGTGT+TGG - chr1_2:66505184-66505203 None:intergenic 60.0%
! CCTAACTTGGTAGCCGGAGG+TGG - chr1_2:66505244-66505263 None:intergenic 60.0%
CCACCTCCGGCTACCAAGTT+AGG + chr1_2:66505241-66505260 Msa0086000:CDS 60.0%
! GTCGGGCCTAACTTGGTAGC+CGG - chr1_2:66505250-66505269 None:intergenic 60.0%
GCTGCTGCGGGACTATTGTC+GGG - chr1_2:66505267-66505286 None:intergenic 60.0%
! TGGCGGAGCTGGTTCAAACC+AGG + chr1_2:66505663-66505682 Msa0086000:CDS 60.0%
! CGGAGCTGGTTCAAACCAGG+TGG + chr1_2:66505666-66505685 Msa0086000:CDS 60.0%
!! AACGGTGCCACCATGCTCTC+CGG - chr1_2:66505697-66505716 None:intergenic 60.0%
GAGCATGGTGGCACCGTTGA+TGG + chr1_2:66505699-66505718 Msa0086000:CDS 60.0%
!! GGCACCGTTGATGGTTCAGC+CGG + chr1_2:66505708-66505727 Msa0086000:CDS 60.0%
TGGTTCAGCCGGAGCAGCAA+TGG + chr1_2:66505719-66505738 Msa0086000:CDS 60.0%
TTCAGCCGGAGCAGCAATGG+CGG + chr1_2:66505722-66505741 Msa0086000:CDS 60.0%
CATGGAGCAGAACCGTGGAC+AGG + chr1_2:66505768-66505787 Msa0086000:CDS 60.0%
!! GAAAGTGGTGGTGGTGGTGG+TGG + chr1_2:66505859-66505878 Msa0086000:CDS 60.0%
CAAGCTGATGCACCCACTGC+AGG - chr1_2:66505910-66505929 None:intergenic 60.0%
GCAGGAGTTGTCGAGGAGGA+TGG + chr1_2:66506022-66506041 Msa0086000:three_prime_UTR 60.0%
GGAGTTGTCGAGGAGGATGG+TGG + chr1_2:66506025-66506044 Msa0086000:three_prime_UTR 60.0%
! GTCGAGGAGGATGGTGGTGA+TGG + chr1_2:66506031-66506050 Msa0086000:three_prime_UTR 60.0%
!! GAGGAGGATGGTGGTGATGG+TGG + chr1_2:66506034-66506053 Msa0086000:three_prime_UTR 60.0%
! ATGACGGCGGAAGGTGGTGG+TGG + chr1_2:66503107-66503126 Msa0086000:CDS 65.0%
!! GCTACCGCCGGTGTTGGTGT+TGG - chr1_2:66505178-66505197 None:intergenic 65.0%
GTAGCCGGAGGTGGTTGTGC+TGG - chr1_2:66505235-66505254 None:intergenic 65.0%
! GGGCCTAACTTGGTAGCCGG+AGG - chr1_2:66505247-66505266 None:intergenic 65.0%
CAATGGCGGCCACCTCAGCA+GGG + chr1_2:66505736-66505755 Msa0086000:CDS 65.0%
GCAGCTGCTGCTGCTGCTGC+TGG - chr1_2:66503077-66503096 None:intergenic 70.0%
!! ACGGCGGAAGGTGGTGGTGG+TGG + chr1_2:66503110-66503129 Msa0086000:CDS 70.0%
GCCGCCAGCACAACCACCTC+CGG + chr1_2:66505228-66505247 Msa0086000:CDS 70.0%
GCCGGAGGTGGTTGTGCTGG+CGG - chr1_2:66505232-66505251 None:intergenic 70.0%
TGCTCTCCGGCTGCACCACC+TGG - chr1_2:66505684-66505703 None:intergenic 70.0%
GGTGGTGCAGCCGGAGAGCA+TGG + chr1_2:66505684-66505703 Msa0086000:CDS 70.0%
! GGTGCAGCCGGAGAGCATGG+TGG + chr1_2:66505687-66505706 Msa0086000:CDS 70.0%
GGTGGCCGCCATTGCTGCTC+CGG - chr1_2:66505730-66505749 None:intergenic 70.0%
GCAATGGCGGCCACCTCAGC+AGG + chr1_2:66505735-66505754 Msa0086000:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 66502817 66506399 66502817 ID=Msa0086000;Name=Msa0086000
chr1_2 mRNA 66502817 66506399 66502817 ID=Msa0086000-mRNA-1;Parent=Msa0086000;Name=Msa0086000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=212|1|1|1|1|1|2|469|648
chr1_2 exon 66502817 66503312 66502817 ID=Msa0086000-mRNA-1:exon:22475;Parent=Msa0086000-mRNA-1
chr1_2 exon 66504268 66506399 66504268 ID=Msa0086000-mRNA-1:exon:22476;Parent=Msa0086000-mRNA-1
chr1_2 five_prime_UTR 66502817 66503028 66502817 ID=Msa0086000-mRNA-1:five_prime_utr;Parent=Msa0086000-mRNA-1
chr1_2 CDS 66503029 66503312 66503029 ID=Msa0086000-mRNA-1:cds;Parent=Msa0086000-mRNA-1
chr1_2 CDS 66504268 66505930 66504268 ID=Msa0086000-mRNA-1:cds;Parent=Msa0086000-mRNA-1
chr1_2 three_prime_UTR 66505931 66506399 66505931 ID=Msa0086000-mRNA-1:three_prime_utr;Parent=Msa0086000-mRNA-1
Gene Sequence

>Msa0086000

ATGCTAGGTGACTCAGCTGTTTTAAGTGGTGGCGGTGGAGATGCACCAGCAGCAGCAGCAGCAGCTGCACCACCTAACATGACGGCGGAAGGTGGTGGTGGTGGAGTTGGATCAAATTCAGAGAGTGATGTTGAAAGAGGAAGAGTTGAAGATGGTGAACGTAGCTTCGGTGGTAACCGGTGGCCGCGACAAGAAACTTTGGCGCTTTTAAGCATACGATCGGATATGGATACAGTGTTTCGAGATGCAAGTGTTAAAGGTCCTTTGTGGGATGAAGTTTCAAGGAAGCTAGCAGAACTTGGGTACCACAGAAGTTCAAAGAAATGCAAAGAGAAGTTTGAGAATGTTTATAAGTATCACAAGAGAACCAAAGATGGCCGAGGTGGAAAATCAGATGGTAAAACTTATCGATTTTTTGATCAATTAGAAGCCCTTGATCATTTTCATACCAACCCTTCAACTCATCAACATCAACCTCAAAACATAGCAAAACCACCACAAATTTCGGCACCAACACCGTCACAAGTTGTTACAACTGCAACAGTTTCACTACCAATAACAGAAGCAACAATGTCACAAATGGTTAACACCACTCTAAGTATCCCTCATGCAACTGTTCCATCAATTTCAATGCCTCAAAACAATATTGCAACTACCCAACCAATTATGAATATGAATCCTACAATCCCATCCAATCCTTCAACTATTTTCCAACCATCAACAACAAACCCTACTTCCACCAACCCTCTTCCATCTTTTCCTAACATTTCTACAGATCTATTATCCAATTCCATGGCTAGCTCCTACTCGACGTCTTCCGAAGACACAATGGAAGAAGGATCTCGAAAGAGGAAGCGGAAATGGAAGGACTTTTTTGAGAGAATAATGAAGAAAGTGACAGAGAAGCAAGAGGATTTGCAGAAGAGATTCTTGGAGGTCATTGAGAAACGCGAGCAGGAACGAGTTGTTAGAGAAGAAGCGTGGAGAGCACAAGAGATGCAAAGAATCAATAGAGAGAGGGAAATGCTTGCACAAGAAAGATCTATAACTGCAGCAAAAGATGCTGCAGTTATGTCTTTCTTGCAAAAAATTGCAGAACAACAAAATCTAGGACAAGCATTGCATAACATCAACATTGCACAACCGCCACCACCACAACAACCACAACAACAACCACAAAGAAGTGTAGCACCAACACCAACACCGGCGGTAGCACCAATATCAGTGGTACAAGTTAACACAACGCCGCCAGCACAACCACCTCCGGCTACCAAGTTAGGCCCGACAATAGTCCCGCAGCAGCAACAACAACAATTGGTGACAAATATGGAAATTGTGAAAGTTGATAACAATGGTGAGACTTTCATGGGAGGGATGAGTTCGTCAAGATGGCCGAAAGTTGAAGTTCAAGCATTGATAAATCTGAGGACGAGCATGGACAATAAGTACCAAGAGAATGGACCAAAAGGTCCTCTATGGGAGGAGATATCTTTAGCAATGAAGAACCTCGGTTACAATAGGAATGCAAAAAGGTGCAAAGAAAAATGGGAGAATATAAACAAGTACTTCAAGAAAGTGAAAGAAAGTAACAAAAAGAGACCCGAAGATTCAAAGACATGTCCTTATTTTCATCAGTTGGATGCTTTGTATAAGGAGAAAGGAAAGGGGGACAATTCTAGTGGCGGAGCTGGTTCAAACCAGGTGGTGCAGCCGGAGAGCATGGTGGCACCGTTGATGGTTCAGCCGGAGCAGCAATGGCGGCCACCTCAGCAGGGAGAAGATAACATGGAGCAGAACCGTGGACAGGAAGAAGAAGAAGATATGGATGAAGATGATAAAGATGGTGAGGAAGAAGATGATGAAGAAGATATGGATGAAAGTGGTGGTGGTGGTGGTGGTAACTTTGAGGTAGTGGCAAACAAACCTGCAGTGGGTGCATCAGCTTGA
Protein sequence

>Msa0086000

MLGDSAVLSGGGGDAPAAAAAAAPPNMTAEGGGGGVGSNSESDVERGRVEDGERSFGGNRWPRQETLALLSIRSDMDTVFRDASVKGPLWDEVSRKLAELGYHRSSKKCKEKFENVYKYHKRTKDGRGGKSDGKTYRFFDQLEALDHFHTNPSTHQHQPQNIAKPPQISAPTPSQVVTTATVSLPITEATMSQMVNTTLSIPHATVPSISMPQNNIATTQPIMNMNPTIPSNPSTIFQPSTTNPTSTNPLPSFPNISTDLLSNSMASSYSTSSEDTMEEGSRKRKRKWKDFFERIMKKVTEKQEDLQKRFLEVIEKREQERVVREEAWRAQEMQRINREREMLAQERSITAAKDAAVMSFLQKIAEQQNLGQALHNINIAQPPPPQQPQQQPQRSVAPTPTPAVAPISVVQVNTTPPAQPPPATKLGPTIVPQQQQQQLVTNMEIVKVDNNGETFMGGMSSSRWPKVEVQALINLRTSMDNKYQENGPKGPLWEEISLAMKNLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYKEKGKGDNSSGGAGSNQVVQPESMVAPLMVQPEQQWRPPQQGEDNMEQNRGQEEEEDMDEDDKDGEEEDDEEDMDESGGGGGGNFEVVANKPAVGASA*