AlfalfaGEDB | Msa0708860

M. sativa cultivar zhongmu-4 / Msa0708860

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0708860	XP_013450460.2	82.692	208	28	3	57	256	9	216	1.27e-113	336

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0708860	A0A072U5S6	90.270	185	17	1	73	256	22	206	1.85e-113	334

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0708860	-0.828862	7.098467e-55	-8.615850e-47
Msa0001790	Msa0708860	0.806653	7.410217e-50	-8.615850e-47
Msa0008050	Msa0708860	0.801880	7.306977e-49	-8.615850e-47
Msa0011170	Msa0708860	0.806840	6.764780e-50	-8.615850e-47
Msa0011720	Msa0708860	0.828255	9.953878e-55	-8.615850e-47
Msa0012040	Msa0708860	0.813610	2.345537e-51	-8.615850e-47
Msa0013050	Msa0708860	-0.810739	9.923822e-51	-8.615850e-47
Msa0014710	Msa0708860	0.806407	8.352266e-50	-8.615850e-47
Msa0017510	Msa0708860	0.826480	2.650563e-54	-8.615850e-47
Msa0023470	Msa0708860	0.824795	6.649091e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0708860	MtrunA17_Chr7g0271791	92.222	180	13	1	78	256	3	182	4.31e-117	333
Msa0708860	MtrunA17_Chr7g0271781	81.215	181	34	0	78	258	28	208	5.05e-107	308
Msa0708860	MtrunA17_Chr1g0192771	73.016	126	34	0	79	204	27	152	9.77e-62	193

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0708860	AT1G56423.1	65.385	182	63	0	79	260	25	206	1.07e-82	249
Msa0708860	AT1G56423.2	65.385	182	63	0	79	260	25	206	1.17e-82	248

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Find 135 sgRNAs with CRISPR-Local

Find 470 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGCACCACAATTGAAAA+TGG	0.277979	4_4:-82629926	None:intergenic
AACTTACGGTGTAGGTTTCA+TGG	0.367784	4_4:+82631258	Msa0708860:five_prime_UTR
AACTTATAGTGGAGGCTTCA+TGG	0.360821	4_4:+82636590	Msa0708860:CDS
AACTTTAGCATGTGGGGTCA+AGG	0.516673	4_4:+82636281	Msa0708860:CDS
AAGAATACATCATCCAAAAG+TGG	0.436749	4_4:+82636219	Msa0708860:CDS
AAGAATCCCTCTCACGAGAA+AGG	0.480196	4_4:-82629971	None:intergenic
AAGGGATTTGGATTGTGTGG+CGG	0.699732	4_4:-82629888	None:intergenic
AATATGTTACTTAAATTCTT+AGG	0.228883	4_4:+82636884	Msa0708860:three_prime_UTR
AATCGGACCTATAACGCGGT+TGG	0.607623	4_4:-82636478	None:intergenic
AATTGCTTTGATATGGGCTC+AGG	0.437174	4_4:+82630926	Msa0708860:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGCACCACAATTGAAAA+TGG	-	chr4_4:82629929-82629948	None:intergenic	30.0%
GAATGGAAGAAACAGTTAAA+CGG	-	chr4_4:82630094-82630113	None:intergenic	30.0%
TGAATAAGATAAACCTGATC+AGG	-	chr4_4:82630315-82630334	None:intergenic	30.0%
TATTGTTCCTTACATCAAAG+TGG	+	chr4_4:82630757-82630776	Msa0708860:intron	30.0%
TGGGTTCTCATATTTAACTA+TGG	+	chr4_4:82630792-82630811	Msa0708860:intron	30.0%
TTATCTTGTTGGAAGTCAAT+TGG	+	chr4_4:82631306-82631325	Msa0708860:five_prime_UTR	30.0%
TATCTTGTTGGAAGTCAATT+GGG	+	chr4_4:82631307-82631326	Msa0708860:five_prime_UTR	30.0%
TCAAACACTTCATTAAACCA+TGG	-	chr4_4:82631842-82631861	None:intergenic	30.0%
GAACTGGATTAACAATGATT+TGG	+	chr4_4:82631932-82631951	Msa0708860:intron	30.0%
CTCTTATAAGTTTGGTCATA+TGG	+	chr4_4:82632021-82632040	Msa0708860:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	82629891	82636986	82629891	ID=Msa0708860;Name=Msa0708860
chr4_4	mRNA	82629891	82636986	82629891	ID=Msa0708860-mRNA-1;Parent=Msa0708860;Name=Msa0708860-mRNA-1;_AED=0.05;_eAED=0.09;_QI=964\|0.33\|0.5\|1\|0.33\|0.5\|4\|228\|265
chr4_4	exon	82629891	82630189	82629891	ID=Msa0708860-mRNA-1:exon:27193;Parent=Msa0708860-mRNA-1
chr4_4	exon	82630861	82631661	82630861	ID=Msa0708860-mRNA-1:exon:27194;Parent=Msa0708860-mRNA-1
chr4_4	exon	82634536	82634631	82634536	ID=Msa0708860-mRNA-1:exon:27195;Parent=Msa0708860-mRNA-1
chr4_4	exon	82636193	82636986	82636193	ID=Msa0708860-mRNA-1:exon:27196;Parent=Msa0708860-mRNA-1
chr4_4	five_prime_UTR	82629891	82630189	82629891	ID=Msa0708860-mRNA-1:five_prime_utr;Parent=Msa0708860-mRNA-1
chr4_4	five_prime_UTR	82630861	82631525	82630861	ID=Msa0708860-mRNA-1:five_prime_utr;Parent=Msa0708860-mRNA-1
chr4_4	CDS	82631526	82631661	82631526	ID=Msa0708860-mRNA-1:cds;Parent=Msa0708860-mRNA-1
chr4_4	CDS	82634536	82634631	82634536	ID=Msa0708860-mRNA-1:cds;Parent=Msa0708860-mRNA-1
chr4_4	CDS	82636193	82636758	82636193	ID=Msa0708860-mRNA-1:cds;Parent=Msa0708860-mRNA-1
chr4_4	three_prime_UTR	82636759	82636986	82636759	ID=Msa0708860-mRNA-1:three_prime_utr;Parent=Msa0708860-mRNA-1

Gene Sequence

>Msa0708860

ATGAATATATCTATTAACGGCAAGAAAGCATATAAAGATTCTGTTTATACCAATATTGTTTTTCTTTTCACATTATATGATTGGATGTACATGTGTTCTTATTCTCTGTGTCTGCTCCAGTTTTGTATATGGATGGGTTATGTTATTTTTAACTCTTTTTTACCATGCCATGGATTTCCAGAAGAAGAAGAAGAAGAAAAGAGATTGGTTTCTTCTATTTGTCGCTGCCATCCTAAAAAATGCAGGGAGCTTGTTGGCAAGAATACATCATCCAAAAGTGGGAAGTTTACATTCTTAAATTGCTTTGATATGGGCTCTGGAACTTTAGCATGTGGGGTCAAGGAAAGTGTGAAGCTCTATGCTAACAGTATTAGATCTTCTCATGTTGAAAAAGCAAGAGATGATACAATCCTATCTGCTCTTGTCTATGCTGCTTCAAAGGGTATGTCACCAACTGATTCAGAAAAATATGCTCAGAAAGAAGGCGCGAAAGCGATGAAATTGGCTACTCGTAAGGCCAACCGCGTTATAGGTCCGATTATCTCTTTCGGATGGGACTTTTTTGAAGCTGTTTACCATGGTGGTACCTTTACAGAGGGATTTCTTAGGGGAACTAGTACTTTGTTTGGAACTTATAGTGGAGGCTTCATGGGAGAGCAAAGACTTGGAAGATTTGGTTATCTTGTTGGAAGTCAATTGGGAAGTTGGGTTGGAGGTAGAATAGGACTCATGCTCTATGATGTTGTTAATGGAGTGCATTATATGTTGCAGTTTGTTCAACTACACATTTGGAGGTAG

Protein sequence

>Msa0708860

MNISINGKKAYKDSVYTNIVFLFTLYDWMYMCSYSLCLLQFCIWMGYVIFNSFLPCHGFPEEEEEEKRLVSSICRCHPKKCRELVGKNTSSKSGKFTFLNCFDMGSGTLACGVKESVKLYANSIRSSHVEKARDDTILSALVYAASKGMSPTDSEKYAQKEGAKAMKLATRKANRVIGPIISFGWDFFEAVYHGGTFTEGFLRGTSTLFGTYSGGFMGEQRLGRFGYLVGSQLGSWVGGRIGLMLYDVVNGVHYMLQFVQLHIWR*